Query psy4226
Match_columns 183
No_of_seqs 224 out of 1644
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 20:04:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.8 1.7E-19 5.8E-24 117.8 4.0 70 104-175 6-75 (75)
2 2l0b_A E3 ubiquitin-protein li 99.8 3.4E-19 1.1E-23 120.7 5.0 75 97-172 15-89 (91)
3 2kiz_A E3 ubiquitin-protein li 99.7 2.6E-18 8.7E-23 110.3 5.0 57 120-176 11-67 (69)
4 2ect_A Ring finger protein 126 99.7 6E-18 2.1E-22 111.0 5.4 56 120-175 12-67 (78)
5 1iym_A EL5; ring-H2 finger, ub 99.7 3.3E-18 1.1E-22 104.9 3.7 50 122-171 4-54 (55)
6 2ep4_A Ring finger protein 24; 99.7 6.2E-18 2.1E-22 109.9 4.6 56 122-177 14-69 (74)
7 2ecl_A Ring-box protein 2; RNF 99.7 2.2E-17 7.5E-22 109.4 3.7 51 123-173 15-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 7E-17 2.4E-21 98.8 3.5 50 122-171 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.6 1.1E-16 3.9E-21 112.3 4.8 57 123-179 25-101 (114)
10 3ng2_A RNF4, snurf, ring finge 99.6 6.3E-17 2.2E-21 104.1 2.5 56 122-177 9-68 (71)
11 2xeu_A Ring finger protein 4; 99.6 1.2E-16 4E-21 100.6 1.5 54 123-176 3-60 (64)
12 2ea6_A Ring finger protein 4; 99.6 1.8E-16 6.2E-21 101.2 2.3 52 121-172 13-68 (69)
13 2d8t_A Dactylidin, ring finger 99.6 3E-16 1E-20 101.2 3.2 53 120-175 12-64 (71)
14 3dpl_R Ring-box protein 1; ubi 99.6 5.2E-16 1.8E-20 107.7 4.3 50 122-171 36-100 (106)
15 2d8s_A Cellular modulator of i 99.6 9E-16 3.1E-20 101.3 3.9 58 120-178 12-76 (80)
16 2yur_A Retinoblastoma-binding 99.6 1.6E-15 5.6E-20 98.5 4.8 56 121-179 13-71 (74)
17 2djb_A Polycomb group ring fin 99.6 1.7E-15 5.7E-20 97.9 4.6 53 121-176 13-66 (72)
18 2ecn_A Ring finger protein 141 99.6 9.4E-16 3.2E-20 98.4 3.2 51 122-176 14-64 (70)
19 1chc_A Equine herpes virus-1 r 99.6 1.5E-15 5.3E-20 96.8 4.0 50 122-173 4-53 (68)
20 2csy_A Zinc finger protein 183 99.5 3E-15 1E-19 98.8 3.4 48 121-171 13-60 (81)
21 2ecy_A TNF receptor-associated 99.5 3.9E-15 1.3E-19 94.5 3.6 51 121-174 13-64 (66)
22 2ysl_A Tripartite motif-contai 99.5 5.8E-15 2E-19 95.3 4.0 50 121-173 18-70 (73)
23 2ct2_A Tripartite motif protei 99.5 8E-15 2.8E-19 97.9 4.8 53 121-173 13-69 (88)
24 4a0k_B E3 ubiquitin-protein li 99.5 1.4E-15 4.9E-20 107.1 0.4 50 122-171 47-111 (117)
25 4ayc_A E3 ubiquitin-protein li 99.5 6E-15 2.1E-19 107.0 2.7 48 123-173 53-100 (138)
26 2egp_A Tripartite motif-contai 99.5 5.8E-15 2E-19 96.7 2.4 50 122-174 11-67 (79)
27 2ecw_A Tripartite motif-contai 99.5 2.2E-14 7.5E-19 94.9 5.2 51 121-174 17-73 (85)
28 2ecv_A Tripartite motif-contai 99.5 2.5E-14 8.6E-19 94.6 5.3 51 121-174 17-73 (85)
29 4ap4_A E3 ubiquitin ligase RNF 99.5 7.6E-15 2.6E-19 105.0 2.5 56 122-177 6-65 (133)
30 1t1h_A Gspef-atpub14, armadill 99.5 2.3E-14 7.9E-19 93.7 3.5 49 122-173 7-56 (78)
31 3ztg_A E3 ubiquitin-protein li 99.5 2.7E-14 9.2E-19 96.3 4.0 53 121-176 11-66 (92)
32 3lrq_A E3 ubiquitin-protein li 99.5 1.1E-14 3.7E-19 100.0 1.8 48 123-173 22-71 (100)
33 2ysj_A Tripartite motif-contai 99.4 6.2E-14 2.1E-18 88.0 4.4 43 121-166 18-63 (63)
34 1g25_A CDK-activating kinase a 99.4 3.5E-14 1.2E-18 89.8 3.1 59 123-182 3-64 (65)
35 3fl2_A E3 ubiquitin-protein li 99.4 3.3E-14 1.1E-18 101.1 2.8 52 123-177 52-104 (124)
36 2ckl_A Polycomb group ring fin 99.4 3.2E-14 1.1E-18 98.9 2.5 49 123-174 15-64 (108)
37 2ecj_A Tripartite motif-contai 99.4 6E-14 2.1E-18 86.4 3.4 43 121-166 13-58 (58)
38 2y43_A E3 ubiquitin-protein li 99.4 3.5E-14 1.2E-18 97.1 2.5 48 123-173 22-70 (99)
39 2ct0_A Non-SMC element 1 homol 99.4 1.7E-13 5.9E-18 88.7 3.8 53 121-175 13-67 (74)
40 4ap4_A E3 ubiquitin ligase RNF 99.4 7.3E-14 2.5E-18 99.8 2.3 57 121-177 70-130 (133)
41 1e4u_A Transcriptional repress 99.4 5.2E-13 1.8E-17 87.6 4.9 59 121-180 9-70 (78)
42 1z6u_A NP95-like ring finger p 99.4 2.2E-13 7.4E-18 100.2 3.3 53 123-178 78-131 (150)
43 2ckl_B Ubiquitin ligase protei 99.4 1.7E-13 5.8E-18 102.1 2.6 51 123-176 54-106 (165)
44 1rmd_A RAG1; V(D)J recombinati 99.4 1.4E-13 4.7E-18 96.8 1.9 51 122-175 22-73 (116)
45 1jm7_A BRCA1, breast cancer ty 99.4 2.3E-13 7.9E-18 94.8 2.8 49 123-174 21-72 (112)
46 3l11_A E3 ubiquitin-protein li 99.3 1.1E-13 3.7E-18 97.2 0.8 48 122-172 14-62 (115)
47 3hct_A TNF receptor-associated 99.3 3E-13 1E-17 95.4 2.9 51 121-174 16-67 (118)
48 1bor_A Transcription factor PM 99.3 2.4E-13 8.1E-18 83.5 1.7 49 122-176 5-53 (56)
49 2vje_A E3 ubiquitin-protein li 99.3 4E-13 1.4E-17 84.8 1.8 48 122-172 7-57 (64)
50 2vje_B MDM4 protein; proto-onc 99.3 5.6E-13 1.9E-17 83.9 1.9 49 122-173 6-57 (63)
51 2kr4_A Ubiquitin conjugation f 99.3 1.4E-12 4.9E-17 86.8 3.6 49 122-173 13-61 (85)
52 2kre_A Ubiquitin conjugation f 99.3 2E-12 6.9E-17 88.7 3.9 49 121-172 27-75 (100)
53 2y1n_A E3 ubiquitin-protein li 99.3 1.6E-12 5.3E-17 108.4 3.4 50 123-175 332-382 (389)
54 1wgm_A Ubiquitin conjugation f 99.2 6.4E-12 2.2E-16 85.9 4.8 49 122-173 21-70 (98)
55 3knv_A TNF receptor-associated 99.2 2.2E-12 7.7E-17 93.8 2.2 48 121-171 29-77 (141)
56 1jm7_B BARD1, BRCA1-associated 99.2 2.4E-12 8.2E-17 90.6 1.5 45 123-172 22-67 (117)
57 4ic3_A E3 ubiquitin-protein li 99.2 2.1E-12 7.2E-17 83.7 0.8 45 123-174 24-69 (74)
58 3hcs_A TNF receptor-associated 99.1 1.5E-11 5.2E-16 91.8 1.9 52 121-175 16-68 (170)
59 2c2l_A CHIP, carboxy terminus 99.1 7.2E-11 2.5E-15 94.1 5.9 49 122-173 207-256 (281)
60 2ea5_A Cell growth regulator w 99.1 5.6E-11 1.9E-15 75.7 3.8 47 122-175 14-61 (68)
61 2yu4_A E3 SUMO-protein ligase 99.1 2.3E-11 8E-16 82.4 1.6 45 122-169 6-59 (94)
62 2ecg_A Baculoviral IAP repeat- 99.0 3.1E-11 1.1E-15 78.3 1.0 44 123-173 25-69 (75)
63 1vyx_A ORF K3, K3RING; zinc-bi 99.0 1.7E-10 5.9E-15 71.6 2.4 47 122-171 5-58 (60)
64 3k1l_B Fancl; UBC, ring, RWD, 99.0 9.7E-11 3.3E-15 95.6 1.6 52 122-173 307-374 (381)
65 2yho_A E3 ubiquitin-protein li 99.0 6.7E-11 2.3E-15 77.6 0.5 46 123-175 18-64 (79)
66 1wim_A KIAA0161 protein; ring 99.0 1.1E-10 3.8E-15 78.9 1.3 50 123-172 5-66 (94)
67 2f42_A STIP1 homology and U-bo 99.0 2.6E-10 8.9E-15 85.8 3.1 50 121-173 104-154 (179)
68 3t6p_A Baculoviral IAP repeat- 98.8 7.2E-10 2.4E-14 91.5 2.0 45 123-174 295-340 (345)
69 2bay_A PRE-mRNA splicing facto 98.8 1E-09 3.5E-14 68.4 1.3 48 124-174 4-52 (61)
70 3htk_C E3 SUMO-protein ligase 98.8 2.9E-09 1E-13 84.1 3.0 49 123-173 181-233 (267)
71 3vk6_A E3 ubiquitin-protein li 98.5 5E-08 1.7E-12 65.7 2.9 49 125-175 3-52 (101)
72 3nw0_A Non-structural maintena 98.0 2.3E-06 7.8E-11 67.1 2.8 50 123-174 180-231 (238)
73 2lri_C Autoimmune regulator; Z 96.6 0.0012 4E-08 41.2 2.5 48 121-171 10-61 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0019 6.4E-08 43.3 1.8 35 123-157 3-38 (101)
75 1mm2_A MI2-beta; PHD, zinc fin 95.6 0.004 1.4E-07 38.1 1.3 50 121-173 7-60 (61)
76 2yql_A PHD finger protein 21A; 95.0 0.0065 2.2E-07 36.4 0.8 46 120-168 6-55 (56)
77 2ko5_A Ring finger protein Z; 94.5 0.023 7.8E-07 37.6 2.5 49 124-177 29-78 (99)
78 1wil_A KIAA1045 protein; ring 94.4 0.026 9E-07 36.5 2.6 34 119-156 11-47 (89)
79 2puy_A PHD finger protein 21A; 94.1 0.0085 2.9E-07 36.4 -0.1 50 122-174 4-57 (60)
80 1fp0_A KAP-1 corepressor; PHD 93.7 0.054 1.8E-06 35.5 3.1 47 120-169 22-72 (88)
81 2l5u_A Chromodomain-helicase-D 93.6 0.03 1E-06 34.0 1.8 45 122-169 10-58 (61)
82 1we9_A PHD finger family prote 93.3 0.036 1.2E-06 33.9 1.8 51 122-172 5-61 (64)
83 3o36_A Transcription intermedi 93.3 0.023 7.8E-07 42.3 1.0 47 122-171 3-53 (184)
84 3u5n_A E3 ubiquitin-protein li 93.1 0.018 6.1E-07 43.7 0.2 47 122-171 6-56 (207)
85 2k16_A Transcription initiatio 93.1 0.025 8.5E-07 35.8 0.8 54 121-174 16-73 (75)
86 1xwh_A Autoimmune regulator; P 92.4 0.037 1.3E-06 34.2 0.9 48 122-172 7-58 (66)
87 3lqh_A Histone-lysine N-methyl 91.7 0.062 2.1E-06 40.1 1.5 49 123-171 2-65 (183)
88 1f62_A Transcription factor WS 91.1 0.071 2.4E-06 30.9 1.1 44 125-168 2-49 (51)
89 2ysm_A Myeloid/lymphoid or mix 90.9 0.097 3.3E-06 35.5 1.8 37 122-158 6-42 (111)
90 2e6r_A Jumonji/ARID domain-con 90.0 0.057 2E-06 35.7 -0.0 48 122-169 15-66 (92)
91 2yt5_A Metal-response element- 90.0 0.095 3.3E-06 32.1 1.0 50 121-170 4-62 (66)
92 3m62_A Ubiquitin conjugation f 89.5 0.24 8.3E-06 45.6 3.6 50 121-173 889-939 (968)
93 2lbm_A Transcriptional regulat 89.4 0.28 9.6E-06 35.0 3.2 45 122-169 62-117 (142)
94 1wev_A Riken cDNA 1110020M19; 88.1 0.11 3.6E-06 34.0 0.3 55 122-176 15-79 (88)
95 1wen_A Inhibitor of growth fam 88.1 0.37 1.3E-05 30.1 2.8 49 122-174 15-70 (71)
96 2lv9_A Histone-lysine N-methyl 88.0 0.24 8.1E-06 33.0 2.0 45 123-168 28-75 (98)
97 1weu_A Inhibitor of growth fam 87.8 0.41 1.4E-05 31.5 3.0 48 123-174 36-90 (91)
98 2l43_A N-teminal domain from h 86.9 0.13 4.3E-06 33.7 0.0 50 121-171 23-77 (88)
99 3v43_A Histone acetyltransfera 85.7 0.3 1E-05 33.2 1.5 44 125-168 63-111 (112)
100 2ku3_A Bromodomain-containing 85.6 0.2 6.9E-06 31.3 0.5 48 122-169 15-66 (71)
101 2e6s_A E3 ubiquitin-protein li 85.4 0.16 5.5E-06 32.3 -0.0 45 125-169 28-77 (77)
102 1wem_A Death associated transc 83.8 0.45 1.5E-05 29.9 1.6 49 123-172 16-73 (76)
103 3ql9_A Transcriptional regulat 82.6 0.78 2.7E-05 32.1 2.5 47 122-171 56-113 (129)
104 3asl_A E3 ubiquitin-protein li 82.0 0.19 6.5E-06 31.3 -0.7 45 125-169 20-69 (70)
105 3shb_A E3 ubiquitin-protein li 81.7 0.23 7.7E-06 31.6 -0.5 42 125-169 28-77 (77)
106 2cu8_A Cysteine-rich protein 2 81.3 1.3 4.3E-05 27.4 3.0 40 123-172 9-48 (76)
107 4gne_A Histone-lysine N-methyl 80.8 1.3 4.4E-05 29.9 3.0 47 122-173 14-66 (107)
108 1zbd_B Rabphilin-3A; G protein 80.7 0.44 1.5E-05 33.6 0.7 48 122-169 54-107 (134)
109 1wfk_A Zinc finger, FYVE domai 79.9 1.6 5.5E-05 28.3 3.2 54 121-174 7-68 (88)
110 2dj7_A Actin-binding LIM prote 79.4 1.7 5.9E-05 27.2 3.2 39 123-171 15-53 (80)
111 3t7l_A Zinc finger FYVE domain 79.3 0.15 5.3E-06 33.4 -1.9 56 123-178 20-82 (90)
112 2kwj_A Zinc finger protein DPF 79.3 0.28 9.4E-06 33.5 -0.7 48 125-172 60-111 (114)
113 3ask_A E3 ubiquitin-protein li 78.8 0.78 2.7E-05 35.2 1.6 45 125-169 176-225 (226)
114 3v43_A Histone acetyltransfera 78.7 1.9 6.5E-05 29.1 3.4 32 123-154 5-42 (112)
115 2rsd_A E3 SUMO-protein ligase 77.0 0.44 1.5E-05 29.3 -0.2 44 124-168 11-64 (68)
116 1wep_A PHF8; structural genomi 76.5 1.2 4.1E-05 28.1 1.8 47 123-170 12-64 (79)
117 1wew_A DNA-binding family prot 76.3 0.95 3.3E-05 28.6 1.2 50 123-173 16-76 (78)
118 2co8_A NEDD9 interacting prote 75.7 2.2 7.5E-05 26.8 2.9 40 123-172 15-54 (82)
119 1g47_A Pinch protein; LIM doma 75.4 2.7 9.3E-05 25.7 3.2 42 123-173 11-52 (77)
120 2ysm_A Myeloid/lymphoid or mix 75.0 0.64 2.2E-05 31.4 0.1 45 125-169 56-104 (111)
121 1iml_A CRIP, cysteine rich int 75.0 0.96 3.3E-05 27.9 1.0 11 125-135 29-39 (76)
122 2kwj_A Zinc finger protein DPF 74.3 2 6.9E-05 29.1 2.6 33 124-156 2-41 (114)
123 1weo_A Cellulose synthase, cat 74.1 3.7 0.00013 26.7 3.6 56 122-177 15-75 (93)
124 1y02_A CARP2, FYVE-ring finger 73.8 0.65 2.2E-05 32.1 -0.0 47 123-169 19-66 (120)
125 1wee_A PHD finger family prote 73.5 1 3.4E-05 28.0 0.8 47 123-170 16-67 (72)
126 3i2d_A E3 SUMO-protein ligase 73.4 1.7 5.9E-05 35.7 2.4 47 124-173 250-301 (371)
127 3o70_A PHD finger protein 13; 73.3 1.1 3.6E-05 27.7 0.8 46 122-168 18-66 (68)
128 4fo9_A E3 SUMO-protein ligase 72.9 1.8 6.2E-05 35.5 2.4 47 124-173 216-267 (360)
129 2d8z_A Four and A half LIM dom 72.7 3.2 0.00011 24.9 3.0 38 123-171 5-42 (70)
130 3c6w_A P28ING5, inhibitor of g 72.5 1.1 3.9E-05 26.7 0.8 42 123-168 9-57 (59)
131 2ri7_A Nucleosome-remodeling f 72.3 1.8 6.2E-05 31.4 2.1 47 122-169 7-59 (174)
132 2vpb_A Hpygo1, pygopus homolog 71.8 2.3 7.7E-05 25.9 2.1 33 122-154 7-41 (65)
133 2d8x_A Protein pinch; LIM doma 71.5 2.4 8.2E-05 25.5 2.2 40 123-173 5-44 (70)
134 1z2q_A LM5-1; membrane protein 71.3 3.3 0.00011 26.4 2.9 51 122-172 20-79 (84)
135 2cor_A Pinch protein; LIM doma 70.8 3.3 0.00011 25.7 2.8 40 123-173 15-54 (79)
136 1x61_A Thyroid receptor intera 70.7 3.7 0.00013 24.8 3.0 40 123-171 5-44 (72)
137 2yw8_A RUN and FYVE domain-con 70.6 3.3 0.00011 26.2 2.8 51 123-173 19-76 (82)
138 2dar_A PDZ and LIM domain prot 70.6 3.1 0.00011 26.5 2.7 40 122-172 24-63 (90)
139 2a20_A Regulating synaptic mem 70.2 0.8 2.7E-05 27.4 -0.2 50 119-168 5-59 (62)
140 1x4l_A Skeletal muscle LIM-pro 69.6 3.7 0.00013 24.8 2.8 40 123-171 5-46 (72)
141 1a7i_A QCRP2 (LIM1); LIM domai 69.5 2.1 7E-05 26.7 1.6 41 123-173 7-47 (81)
142 2gmg_A Hypothetical protein PF 69.4 0.84 2.9E-05 30.7 -0.3 28 141-173 70-97 (105)
143 1wig_A KIAA1808 protein; LIM d 69.4 3.3 0.00011 25.3 2.5 38 123-171 5-42 (73)
144 2cur_A Skeletal muscle LIM-pro 69.1 3 0.0001 25.0 2.3 38 123-171 5-42 (69)
145 1joc_A EEA1, early endosomal a 69.1 3 0.0001 28.8 2.5 34 123-156 69-103 (125)
146 3mjh_B Early endosome antigen 69.0 0.58 2E-05 24.9 -0.9 15 122-136 4-18 (34)
147 1nyp_A Pinch protein; LIM doma 68.3 3.4 0.00012 24.5 2.4 39 123-172 5-43 (66)
148 1x62_A C-terminal LIM domain p 68.3 4.2 0.00014 25.1 2.9 39 123-172 15-53 (79)
149 1vfy_A Phosphatidylinositol-3- 68.2 3.7 0.00013 25.4 2.6 32 124-155 12-44 (73)
150 1z60_A TFIIH basal transcripti 67.5 1.6 5.4E-05 26.2 0.7 42 124-166 16-58 (59)
151 1x6a_A LIMK-2, LIM domain kina 67.2 2.8 9.7E-05 26.0 1.9 42 123-175 15-56 (81)
152 1x64_A Alpha-actinin-2 associa 67.2 7.6 0.00026 24.5 4.1 40 122-172 24-63 (89)
153 2kgg_A Histone demethylase jar 67.2 2.3 7.9E-05 24.5 1.4 42 126-167 5-52 (52)
154 2vnf_A ING 4, P29ING4, inhibit 66.5 1.7 5.9E-05 25.9 0.7 42 123-168 10-58 (60)
155 1wyh_A SLIM 2, skeletal muscle 65.9 5.4 0.00018 23.9 3.0 41 123-172 5-45 (72)
156 1x4k_A Skeletal muscle LIM-pro 65.6 5 0.00017 24.1 2.8 42 123-173 5-46 (72)
157 1x4u_A Zinc finger, FYVE domai 65.3 4.4 0.00015 25.8 2.6 33 123-155 14-47 (84)
158 1x63_A Skeletal muscle LIM-pro 65.1 4.3 0.00015 25.1 2.5 42 123-173 15-56 (82)
159 1zfo_A LAsp-1; LIM domain, zin 64.5 2.1 7.3E-05 21.9 0.8 28 124-153 4-31 (31)
160 2d8v_A Zinc finger FYVE domain 64.4 5 0.00017 24.5 2.5 30 123-156 8-38 (67)
161 1dvp_A HRS, hepatocyte growth 63.9 3.9 0.00013 30.9 2.4 35 122-156 160-195 (220)
162 1wd2_A Ariadne-1 protein homol 63.4 2.2 7.4E-05 25.6 0.8 20 156-175 1-21 (60)
163 3f6q_B LIM and senescent cell 63.1 5.5 0.00019 23.7 2.7 42 123-173 11-52 (72)
164 2d8y_A Eplin protein; LIM doma 63.0 6.4 0.00022 25.0 3.1 41 123-173 15-55 (91)
165 1v6g_A Actin binding LIM prote 62.7 3.3 0.00011 25.7 1.5 39 123-172 15-53 (81)
166 3zyq_A Hepatocyte growth facto 62.2 6.4 0.00022 29.9 3.4 51 122-172 163-222 (226)
167 2zet_C Melanophilin; complex, 61.4 4.3 0.00015 29.1 2.1 47 122-169 67-117 (153)
168 2l3k_A Rhombotin-2, linker, LI 60.4 3.2 0.00011 28.2 1.3 27 125-152 10-36 (123)
169 2jvx_A NF-kappa-B essential mo 60.1 1.7 5.8E-05 22.0 -0.1 14 161-174 4-17 (28)
170 2cs3_A Protein C14ORF4, MY039 59.0 7.1 0.00024 24.9 2.6 36 123-159 15-52 (93)
171 2o35_A Hypothetical protein DU 59.0 2.6 8.8E-05 28.0 0.5 12 148-159 43-54 (105)
172 3fyb_A Protein of unknown func 59.0 2.6 8.8E-05 27.9 0.5 12 148-159 42-53 (104)
173 1x68_A FHL5 protein; four-and- 58.7 6.8 0.00023 23.9 2.5 40 123-171 5-46 (76)
174 3mpx_A FYVE, rhogef and PH dom 58.1 2.1 7.2E-05 35.4 0.0 49 123-171 375-431 (434)
175 2cuq_A Four and A half LIM dom 56.5 6.6 0.00023 24.1 2.2 38 123-171 15-52 (80)
176 2xb1_A Pygopus homolog 2, B-ce 54.5 7.2 0.00025 25.9 2.2 47 124-170 4-62 (105)
177 3a1b_A DNA (cytosine-5)-methyl 54.5 6.3 0.00021 28.5 2.0 33 123-159 79-114 (159)
178 2dlo_A Thyroid receptor-intera 54.3 6.4 0.00022 24.3 1.9 38 123-171 15-52 (81)
179 1x3h_A Leupaxin; paxillin fami 53.9 6.3 0.00022 24.2 1.8 40 123-173 15-54 (80)
180 2jne_A Hypothetical protein YF 53.3 0.82 2.8E-05 30.3 -2.6 41 124-172 33-73 (101)
181 2pv0_B DNA (cytosine-5)-methyl 53.3 8.3 0.00028 31.9 2.8 44 123-169 93-148 (386)
182 2g6q_A Inhibitor of growth pro 52.6 4.5 0.00015 24.3 0.9 42 123-168 11-59 (62)
183 3o7a_A PHD finger protein 13 v 52.3 3.4 0.00012 23.7 0.3 41 128-168 8-51 (52)
184 2cup_A Skeletal muscle LIM-pro 51.8 11 0.00036 24.2 2.7 45 125-173 35-79 (101)
185 2l4z_A DNA endonuclease RBBP8, 50.4 19 0.00064 24.4 3.9 39 123-171 61-99 (123)
186 2jmo_A Parkin; IBR, E3 ligase, 49.2 1.8 6.3E-05 27.4 -1.4 20 143-164 55-74 (80)
187 2jny_A Uncharacterized BCR; st 48.8 3.7 0.00013 25.2 0.0 19 163-181 31-49 (67)
188 1b8t_A Protein (CRP1); LIM dom 48.3 9.3 0.00032 27.9 2.2 40 123-172 115-154 (192)
189 1loi_A Cyclic 3',5'-AMP specif 47.8 1.3 4.6E-05 21.1 -1.6 13 147-159 6-18 (26)
190 2pk7_A Uncharacterized protein 47.8 3.8 0.00013 25.3 -0.0 18 163-180 29-46 (69)
191 2egq_A FHL1 protein; LIM domai 47.6 10 0.00034 23.0 2.0 41 123-172 15-58 (77)
192 2rgt_A Fusion of LIM/homeobox 41.8 15 0.0005 26.2 2.4 39 125-172 67-105 (169)
193 2iyb_E Testin, TESS, TES; LIM 41.5 13 0.00046 21.8 1.8 39 124-171 3-43 (65)
194 1rut_X Flinc4, fusion protein 41.5 13 0.00045 27.0 2.1 39 125-172 71-109 (188)
195 3kqi_A GRC5, PHD finger protei 41.4 6.2 0.00021 24.4 0.2 46 123-169 10-61 (75)
196 2jmi_A Protein YNG1, ING1 homo 41.1 7.1 0.00024 25.4 0.5 42 123-168 26-75 (90)
197 2ct7_A Ring finger protein 31; 39.2 3.5 0.00012 26.4 -1.3 28 140-167 44-74 (86)
198 2xjy_A Rhombotin-2; oncoprotei 38.8 21 0.00073 24.0 2.7 38 125-171 68-105 (131)
199 2xqn_T Testin, TESS; metal-bin 38.7 21 0.00071 23.9 2.6 46 124-173 31-76 (126)
200 2ehe_A Four and A half LIM dom 38.6 16 0.00055 22.4 1.9 40 123-171 15-54 (82)
201 2hf1_A Tetraacyldisaccharide-1 37.8 4.4 0.00015 24.9 -0.9 22 161-182 27-48 (68)
202 2lcq_A Putative toxin VAPC6; P 37.2 15 0.0005 26.2 1.7 26 140-171 134-159 (165)
203 2js4_A UPF0434 protein BB2007; 37.1 4.2 0.00014 25.2 -1.1 20 162-181 28-47 (70)
204 1j2o_A FLIN2, fusion of rhombo 34.1 28 0.00095 22.9 2.6 38 124-171 4-41 (114)
205 3vhs_A ATPase wrnip1; zinc fin 33.5 12 0.00041 18.3 0.5 10 162-171 8-17 (29)
206 2vrw_B P95VAV, VAV1, proto-onc 33.5 62 0.0021 26.2 5.2 33 123-155 357-391 (406)
207 2jrp_A Putative cytoplasmic pr 32.9 3.4 0.00012 26.4 -2.0 11 125-135 4-14 (81)
208 1m3v_A FLIN4, fusion of the LI 31.7 23 0.0008 23.6 2.0 48 125-172 34-81 (122)
209 4bbq_A Lysine-specific demethy 31.1 6.7 0.00023 26.3 -1.0 43 126-168 62-113 (117)
210 2jtn_A LIM domain-binding prot 30.2 38 0.0013 24.2 3.1 29 123-153 60-88 (182)
211 2fiy_A Protein FDHE homolog; F 28.2 7.6 0.00026 31.1 -1.2 47 122-169 181-231 (309)
212 1l8d_A DNA double-strand break 28.0 14 0.00047 24.5 0.2 10 123-132 47-56 (112)
213 3pwf_A Rubrerythrin; non heme 26.8 32 0.0011 24.8 2.0 9 161-169 154-162 (170)
214 2kpi_A Uncharacterized protein 26.3 12 0.00043 21.8 -0.2 22 162-183 28-51 (56)
215 2ffw_A Midline-1; B-BOX, ring 26.0 76 0.0026 19.5 3.5 33 123-155 30-62 (78)
216 2kdx_A HYPA, hydrogenase/ureas 25.7 30 0.001 23.2 1.6 25 140-170 75-100 (119)
217 3c5k_A HD6, histone deacetylas 25.6 54 0.0018 21.8 2.9 24 123-149 24-47 (109)
218 3iib_A Peptidase M28; YP_92679 24.8 48 0.0017 27.5 3.1 26 1-26 196-221 (444)
219 1lko_A Rubrerythrin all-iron(I 22.7 35 0.0012 24.9 1.6 8 162-169 173-180 (191)
220 1lv3_A Hypothetical protein YA 22.5 32 0.0011 21.0 1.1 10 162-171 11-20 (68)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=117.78 Aligned_cols=70 Identities=30% Similarity=0.851 Sum_probs=58.2
Q ss_pred hhcCCCccccCCCcccCCCccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccC
Q psy4226 104 LSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYG 175 (183)
Q Consensus 104 i~~l~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 175 (183)
++++|...+.... ...+...|+||+++|..++.++.+||||.||..|+.+|+..+.+||+||+++.+..|
T Consensus 6 i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 6 SGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSSG 75 (75)
T ss_dssp CSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCCC
T ss_pred HhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCCC
Confidence 4566766665432 233466799999999999999999999999999999999999999999999987654
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-19 Score=120.72 Aligned_cols=75 Identities=31% Similarity=0.750 Sum_probs=63.2
Q ss_pred HHHHHHHhhcCCCccccCCCcccCCCccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 97 CSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 97 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
.+..++.++.+|...+..... ...+...|+||+++|..++.++.+||||.||..||.+|+..+.+||+||..+..
T Consensus 15 ~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 15 PPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 355678889999887765443 234566799999999999999999999999999999999999999999999875
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=110.25 Aligned_cols=57 Identities=35% Similarity=0.915 Sum_probs=50.5
Q ss_pred CCCccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccCC
Q psy4226 120 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGF 176 (183)
Q Consensus 120 ~~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 176 (183)
..+...|+||++.+..++.++.+||||.||..|+.+|+..+.+||+||..+......
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 344567999999999888899999999999999999999999999999999876543
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=6e-18 Score=111.05 Aligned_cols=56 Identities=39% Similarity=0.952 Sum_probs=50.4
Q ss_pred CCCccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccC
Q psy4226 120 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYG 175 (183)
Q Consensus 120 ~~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 175 (183)
..+...|+||++.|..++.++.++|||.||..||.+|+..+.+||+||..+...+-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34567899999999998888999999999999999999999999999999987654
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.71 E-value=3.3e-18 Score=104.86 Aligned_cols=50 Identities=40% Similarity=1.081 Sum_probs=45.7
Q ss_pred CccccccccccccCCCceEEec-CCCccccccHHHHhcCCCcccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
++..|+||++++..++....++ |||.||.+|+.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567999999999988889998 9999999999999999999999999864
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=109.90 Aligned_cols=56 Identities=39% Similarity=0.952 Sum_probs=50.5
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccCCC
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 177 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 177 (183)
+...|+||++++..++.++.+||||.||..|+.+|+..+.+||+||.++.+...+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 45679999999999999999999999999999999999999999999998766543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=109.41 Aligned_cols=51 Identities=29% Similarity=0.793 Sum_probs=42.6
Q ss_pred ccccccccccccC-----------CCceEEec-CCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKP-----------SDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~-----------~~~v~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
++.|+||+++|.+ ++.++.++ |||.||.+||++|+..+.+||+||+++..+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 5568888888854 45566776 999999999999999999999999998654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.64 E-value=7e-17 Score=98.81 Aligned_cols=50 Identities=32% Similarity=0.720 Sum_probs=43.7
Q ss_pred CccccccccccccCC-CceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 122 DGECCAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~-~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
+...|+||++++.++ +..+.++|||.||.+|+.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356799999999764 45788899999999999999999999999999874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.64 E-value=1.1e-16 Score=112.26 Aligned_cols=57 Identities=26% Similarity=0.525 Sum_probs=47.1
Q ss_pred ccccccccccccCCC---------------ceEEecCCCccccccHHHHh-----cCCCcccccccccccccCCCCC
Q psy4226 123 GECCAICIEFYKPSD---------------IVRILPCKHEYHKNCIDPWL-----LEHRTCPMCKMDILKHYGFVSY 179 (183)
Q Consensus 123 ~~~C~ICle~~~~~~---------------~v~~lpC~H~Fh~~Ci~~Wl-----~~~~~CP~CR~~i~~~~~~~~~ 179 (183)
++.|+||+++|..++ .++.++|||.||..||.+|+ ..+.+||+||+.+.+..|..+-
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 457999999997653 34578899999999999999 4567899999999888776543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.63 E-value=6.3e-17 Score=104.08 Aligned_cols=56 Identities=23% Similarity=0.538 Sum_probs=47.8
Q ss_pred CccccccccccccCC----CceEEecCCCccccccHHHHhcCCCcccccccccccccCCC
Q psy4226 122 DGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 177 (183)
Q Consensus 122 ~~~~C~ICle~~~~~----~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 177 (183)
+...|+||++.+.++ +..+.++|||.||..|+.+|+..+.+||+||..+...+-.+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 456799999998763 56688899999999999999999999999999998765443
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.60 E-value=1.2e-16 Score=100.61 Aligned_cols=54 Identities=24% Similarity=0.554 Sum_probs=46.5
Q ss_pred ccccccccccccCC----CceEEecCCCccccccHHHHhcCCCcccccccccccccCC
Q psy4226 123 GECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGF 176 (183)
Q Consensus 123 ~~~C~ICle~~~~~----~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 176 (183)
...|+||++.+.++ +....++|||.||.+|+.+|+..+.+||+||..+.+.+-.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 55799999998753 4567889999999999999999999999999998876543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-16 Score=101.22 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=44.8
Q ss_pred CCccccccccccccCC----CceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 121 GDGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~----~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
.+...|+||++.+.++ +.+..++|||.||..|+.+|+..+.+||+||..+.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3466799999998864 445788999999999999999999999999998764
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3e-16 Score=101.16 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=46.0
Q ss_pred CCCccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccC
Q psy4226 120 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYG 175 (183)
Q Consensus 120 ~~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 175 (183)
..+...|+||++.+.++ ..++|||.||..|+..|+..+.+||+||..+.+..-
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 34466899999998776 788999999999999999999999999999886543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.60 E-value=5.2e-16 Score=107.75 Aligned_cols=50 Identities=28% Similarity=0.567 Sum_probs=43.2
Q ss_pred CccccccccccccCCC---------------ceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 122 DGECCAICIEFYKPSD---------------IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~---------------~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
+++.|+||++.|..+- .++.++|||.||..||++||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4677999999998541 3677899999999999999999999999999853
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9e-16 Score=101.29 Aligned_cols=58 Identities=24% Similarity=0.643 Sum_probs=48.2
Q ss_pred CCCccccccccccccCCCceEEecCC-----CccccccHHHHhcCC--CcccccccccccccCCCC
Q psy4226 120 SGDGECCAICIEFYKPSDIVRILPCK-----HEYHKNCIDPWLLEH--RTCPMCKMDILKHYGFVS 178 (183)
Q Consensus 120 ~~~~~~C~ICle~~~~~~~v~~lpC~-----H~Fh~~Ci~~Wl~~~--~~CP~CR~~i~~~~~~~~ 178 (183)
..+++.|+||++++.+++.+ ++||+ |.||.+||++|+..+ .+||+||..+.-.....+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 34567899999999877765 69996 999999999999875 489999999987666554
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=98.51 Aligned_cols=56 Identities=29% Similarity=0.643 Sum_probs=47.2
Q ss_pred CCccccccccccccCCCceEEec-CCCccccccHHHHhcCC--CcccccccccccccCCCCC
Q psy4226 121 GDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH--RTCPMCKMDILKHYGFVSY 179 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~i~~~~~~~~~ 179 (183)
.+...|+||++.|.++ +.++ |||.||..||..|+..+ .+||+||..+...+.+..+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 3466899999999877 7899 99999999999999865 6899999987776665544
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=97.89 Aligned_cols=53 Identities=21% Similarity=0.530 Sum_probs=45.2
Q ss_pred CCccccccccccccCCCceEEe-cCCCccccccHHHHhcCCCcccccccccccccCC
Q psy4226 121 GDGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGF 176 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 176 (183)
.+...|+||++.+.++ ..+ +|||.||..||..|+..+.+||+||..+...+-.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 3466899999998875 555 8999999999999999889999999998775543
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.4e-16 Score=98.40 Aligned_cols=51 Identities=37% Similarity=0.908 Sum_probs=45.0
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccCC
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGF 176 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 176 (183)
+...|+||++.+.+ ..+||||.||..|+.+|+..+.+||+||..+...+..
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 45679999999875 7899999999999999999999999999999876543
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.56 E-value=1.5e-15 Score=96.79 Aligned_cols=50 Identities=34% Similarity=0.776 Sum_probs=43.4
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
++..|+||++.+.+ ....+||||.||..|+.+|+..+.+||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 35679999999864 347889999999999999999999999999998754
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3e-15 Score=98.83 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=42.8
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
.+...|+||++.+.++ ..++|||.||..|+.+|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456799999999775 67999999999999999999999999999985
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-15 Score=94.47 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=43.2
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhc-CCCccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL-EHRTCPMCKMDILKHY 174 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~i~~~~ 174 (183)
.+...|+||++.+.++ ..++|||.||..|+.+|+. .+.+||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3466799999999877 5589999999999999994 5668999999987653
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.8e-15 Score=95.33 Aligned_cols=50 Identities=24% Similarity=0.643 Sum_probs=42.6
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhc---CCCcccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMCKMDILKH 173 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~CR~~i~~~ 173 (183)
.+...|+||++.+.++ ..++|||.||..|+..|+. .+.+||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3456899999998865 7789999999999999997 355899999998764
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8e-15 Score=97.90 Aligned_cols=53 Identities=23% Similarity=0.594 Sum_probs=45.2
Q ss_pred CCccccccccccccCCCc-eEEecCCCccccccHHHHhcCC---Ccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDI-VRILPCKHEYHKNCIDPWLLEH---RTCPMCKMDILKH 173 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~-v~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~i~~~ 173 (183)
.+...|+||++.|...+. .+.++|||.||..|+..|+..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 346679999999998553 5788999999999999999876 7899999987654
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.51 E-value=1.4e-15 Score=107.07 Aligned_cols=50 Identities=28% Similarity=0.606 Sum_probs=1.0
Q ss_pred CccccccccccccCC-------------C--ceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 122 DGECCAICIEFYKPS-------------D--IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~-------------~--~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
+++.|+||+++|..+ + .+..++|+|.||..||++|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 357899999999752 2 2334589999999999999999999999999853
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.50 E-value=6e-15 Score=107.00 Aligned_cols=48 Identities=31% Similarity=0.856 Sum_probs=43.0
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+||++.|.++ +.+||||.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34699999999876 7899999999999999999999999999998643
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.49 E-value=5.8e-15 Score=96.71 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=43.3
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcC-------CCccccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-------HRTCPMCKMDILKHY 174 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~i~~~~ 174 (183)
+...|+||++.+.++ +.++|||.||..|+..|+.. ..+||+||..+...+
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 456799999999876 67899999999999999987 568999999987643
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=2.2e-14 Score=94.92 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=44.2
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcC------CCccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE------HRTCPMCKMDILKHY 174 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~i~~~~ 174 (183)
.+...|+||++.+..+ ..++|||.||..|+..|+.. ...||+||..+...+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 3456799999999877 68999999999999999987 668999999987653
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=94.64 Aligned_cols=51 Identities=22% Similarity=0.649 Sum_probs=44.2
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcC------CCccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE------HRTCPMCKMDILKHY 174 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~i~~~~ 174 (183)
.+...|+||++.+.++ ..++|||.||..|+..|+.. ...||+||..+...+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3456799999999876 67899999999999999987 778999999988754
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.48 E-value=7.6e-15 Score=104.97 Aligned_cols=56 Identities=23% Similarity=0.538 Sum_probs=47.9
Q ss_pred CccccccccccccCC----CceEEecCCCccccccHHHHhcCCCcccccccccccccCCC
Q psy4226 122 DGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 177 (183)
Q Consensus 122 ~~~~C~ICle~~~~~----~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 177 (183)
+...|+||++.|.++ +..+.++|||.||.+||.+|++.+.+||+||..+....-..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 456799999998764 55688999999999999999999999999999998765533
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.47 E-value=2.3e-14 Score=93.75 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=43.4
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcC-CCcccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~~~ 173 (183)
+...|+||++.|.++ ..++|||.||..||.+|+.. +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 456799999999877 77899999999999999987 77899999998754
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.47 E-value=2.7e-14 Score=96.31 Aligned_cols=53 Identities=30% Similarity=0.702 Sum_probs=44.0
Q ss_pred CCccccccccccccCCCceEEec-CCCccccccHHHHhcCC--CcccccccccccccCC
Q psy4226 121 GDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH--RTCPMCKMDILKHYGF 176 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~i~~~~~~ 176 (183)
.+...|+||++.|.++ +.+| |||.||..||..|+..+ .+||+||..+.....+
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 66 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 66 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCcccc
Confidence 3466899999999987 7899 99999999999999754 5899999997544443
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=100.02 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=42.1
Q ss_pred ccccccccccccCCCceEE-ecCCCccccccHHHHhcCC-Ccccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~-lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~i~~~ 173 (183)
...|+||++.+..+ +. ++|||.||..||.+|+..+ .+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45699999999865 56 8999999999999999987 6999999998654
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.2e-14 Score=88.00 Aligned_cols=43 Identities=23% Similarity=0.682 Sum_probs=37.5
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhc---CCCccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMC 166 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 166 (183)
.+...|+||++.+.++ +.++|||.||..||.+|+. .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3466899999999877 7889999999999999998 45689998
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=3.5e-14 Score=89.76 Aligned_cols=59 Identities=22% Similarity=0.537 Sum_probs=45.0
Q ss_pred ccccccccc-cccCCCce-EEecCCCccccccHHHHhcC-CCcccccccccccccCCCCCCCC
Q psy4226 123 GECCAICIE-FYKPSDIV-RILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYGFVSYLTN 182 (183)
Q Consensus 123 ~~~C~ICle-~~~~~~~v-~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~~~~~~~~~~~~ 182 (183)
...|+||++ .+.++... ..++|||.||..|+++|+.. +.+||+||..+.+. ++.+.+.+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~~ 64 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS-NFRVQLFE 64 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC-CCEEECCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc-cceeeccc
Confidence 456999999 77776433 45789999999999999765 45799999998754 44444444
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.43 E-value=3.3e-14 Score=101.14 Aligned_cols=52 Identities=25% Similarity=0.584 Sum_probs=44.0
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCC-cccccccccccccCCC
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKHYGFV 177 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~~~~~~~ 177 (183)
...|+||++.+..+ ..+||||.||..|+..|+..+. +||+||..+.....+.
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 104 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQ 104 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCC
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCC
Confidence 45799999999876 7889999999999999998654 8999999997744433
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.43 E-value=3.2e-14 Score=98.87 Aligned_cols=49 Identities=24% Similarity=0.711 Sum_probs=43.2
Q ss_pred ccccccccccccCCCceEEe-cCCCccccccHHHHhcCCCccccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 174 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~ 174 (183)
...|+||++.+.++ ..+ +|||.||..|+..|+..+.+||+||..+....
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64 (108)
T ss_dssp GTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSC
T ss_pred cCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccC
Confidence 55799999999865 555 99999999999999999999999999988753
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6e-14 Score=86.41 Aligned_cols=43 Identities=33% Similarity=0.935 Sum_probs=36.8
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhc---CCCccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMC 166 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 166 (183)
.+...|+||++.+.++ +.++|||.||..|+.+|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456799999999887 6789999999999999954 46789998
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.43 E-value=3.5e-14 Score=97.13 Aligned_cols=48 Identities=29% Similarity=0.748 Sum_probs=42.4
Q ss_pred ccccccccccccCCCceEEe-cCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+||++.+.++ ..+ +|||.||..|+..|+..+.+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 45799999999875 556 8999999999999999999999999998763
No 39
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=88.73 Aligned_cols=53 Identities=17% Similarity=0.440 Sum_probs=43.7
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCC--CcccccccccccccC
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPMCKMDILKHYG 175 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~i~~~~~ 175 (183)
...+.|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||.++.-+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 34578999999999775333 799999999999999987 789999998765433
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.39 E-value=7.3e-14 Score=99.77 Aligned_cols=57 Identities=23% Similarity=0.531 Sum_probs=48.1
Q ss_pred CCccccccccccccCC----CceEEecCCCccccccHHHHhcCCCcccccccccccccCCC
Q psy4226 121 GDGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 177 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~----~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 177 (183)
.+...|+||++.+..+ +....++|||.||..|+++|++.+.+||+||.++.+++-.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhccee
Confidence 3466799999998753 44578899999999999999999999999999998876443
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.37 E-value=5.2e-13 Score=87.56 Aligned_cols=59 Identities=22% Similarity=0.475 Sum_probs=44.2
Q ss_pred CCccccccccccccCCCceEEec--CCCccccccHHHHhcC-CCcccccccccccccCCCCCC
Q psy4226 121 GDGECCAICIEFYKPSDIVRILP--CKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYGFVSYL 180 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lp--C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~~~~~~~~~~ 180 (183)
++...|+||++++...+. ..+| |||.||..|+..++.. ...||.||+.+.+..-...++
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~ 70 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL 70 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSC
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccC
Confidence 345679999999865443 3444 9999999999998754 568999999998765443333
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=100.19 Aligned_cols=53 Identities=23% Similarity=0.561 Sum_probs=45.2
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCC-cccccccccccccCCCC
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKHYGFVS 178 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~~~~~~~~ 178 (183)
...|+||++.+.++ ..+||||.||..||..|+.... +||+||..+.....+..
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~ 131 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIP 131 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCB
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCC
Confidence 45799999999876 7799999999999999998765 89999999987754443
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.36 E-value=1.7e-13 Score=102.09 Aligned_cols=51 Identities=24% Similarity=0.671 Sum_probs=42.9
Q ss_pred ccccccccccccCCCceEEe-cCCCccccccHHHHhcC-CCcccccccccccccCC
Q psy4226 123 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYGF 176 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~l-pC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~~~~~~ 176 (183)
...|+||++.+.++ ..+ +|||.||..|+..|+.. +.+||+||..+.....+
T Consensus 54 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l 106 (165)
T 2ckl_B 54 ELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106 (165)
T ss_dssp HHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGE
T ss_pred CCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccC
Confidence 45899999998864 555 99999999999999987 77899999998655443
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.36 E-value=1.4e-13 Score=96.78 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=44.1
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcC-CCcccccccccccccC
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYG 175 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~~~~~ 175 (183)
+...|+||++.+.++ ..++|||.||..|+.+|+.. +.+||+||..+...+-
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 355799999998876 67899999999999999987 6789999999887543
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.35 E-value=2.3e-13 Score=94.78 Aligned_cols=49 Identities=35% Similarity=0.678 Sum_probs=41.9
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCC---ccccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKMDILKHY 174 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~---~CP~CR~~i~~~~ 174 (183)
...|+||++.+.++ ..++|||.||..|+..|+..+. +||+||..+....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 34599999999876 6689999999999999998754 8999999987643
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=97.16 Aligned_cols=48 Identities=27% Similarity=0.673 Sum_probs=42.7
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcC-CCccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~~ 172 (183)
++..|+||++.+..+ +.++|||.||..|+..|+.. +.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456899999999877 78899999999999999977 6689999999875
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.34 E-value=3e-13 Score=95.42 Aligned_cols=51 Identities=24% Similarity=0.506 Sum_probs=44.3
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCCC-ccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKHY 174 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~~~~ 174 (183)
.+...|+||++.+.++ +.++|||.||..|+.+|+..+. +||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 3456899999999876 7789999999999999998765 8999999988754
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=2.4e-13 Score=83.54 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=41.4
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccCC
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGF 176 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~ 176 (183)
+...|+||++.|.++ +.+||||.||..|+..| ..+||+||..+....+-
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSSC
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCcC
Confidence 356799999999987 78999999999999874 56799999998866554
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.31 E-value=4e-13 Score=84.82 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=40.6
Q ss_pred CccccccccccccCCCceEEe--cCCCc-cccccHHHHhcCCCccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRIL--PCKHE-YHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
++..|+||++...+. ..+ ||||. ||.+|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 355799999986554 555 99999 8999999999988899999999864
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.30 E-value=5.6e-13 Score=83.85 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=41.0
Q ss_pred CccccccccccccCCCceEEe--cCCCc-cccccHHHHhcCCCcccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRIL--PCKHE-YHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
....|+||++...+. ..+ ||||. ||.+|+..|...+.+||+||+++.+.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 356799999986554 455 99998 99999999998888999999998653
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=1.4e-12 Score=86.80 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=44.6
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
+...|+||++-|.++ ++++|||.|++.||..|+..+.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 466899999999988 8899999999999999999889999999988654
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.28 E-value=2e-12 Score=88.68 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=44.7
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
.+...|+||++-|.++ ++++|||.|++.||..|+..+.+||+||..+..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3466899999999988 899999999999999999988999999999875
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.26 E-value=1.6e-12 Score=108.42 Aligned_cols=50 Identities=32% Similarity=0.697 Sum_probs=43.9
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhc-CCCcccccccccccccC
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL-EHRTCPMCKMDILKHYG 175 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~i~~~~~ 175 (183)
...|+||++.+.++ +.+||||.||..|+..|+. .+.+||+||..+....-
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 45799999998665 8899999999999999998 67899999999887654
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.24 E-value=6.4e-12 Score=85.86 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=44.5
Q ss_pred CccccccccccccCCCceEEecCC-CccccccHHHHhcCCCcccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCK-HEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
+...|+||++-|.++ ++++|| |.|++.||.+|+..+.+||+||..+...
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 466899999999988 889999 9999999999999988999999988753
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.23 E-value=2.2e-12 Score=93.79 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCCC-cccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDIL 171 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~ 171 (183)
.+...|+||++.+.++ ..++|||.||..||.+|+.... +||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3456899999999887 7789999999999999998765 8999999864
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=2.4e-12 Score=90.59 Aligned_cols=45 Identities=22% Similarity=0.555 Sum_probs=39.7
Q ss_pred ccccccccccccCCCceEEe-cCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+||++.|.++ ..+ +|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 45699999999877 677 8999999999999987 789999999854
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=2.1e-12 Score=83.75 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=38.9
Q ss_pred ccccccccccccCCCceEEecCCCc-cccccHHHHhcCCCccccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKHY 174 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~ 174 (183)
...|+||++.+.+. ..+||||. ||..|+..| .+||+||..+.+..
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ 69 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence 45699999997765 78899999 999999998 78999999987653
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=91.80 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=44.3
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCCC-cccccccccccccC
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKHYG 175 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~~~~~ 175 (183)
.+...|+||++.+.++ +.++|||.||..|+.+|+.... +||+||..+...+-
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 3456899999999877 7789999999999999997754 89999999887543
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=7.2e-11 Score=94.07 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCC-Ccccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~i~~~ 173 (183)
+...|+||++-|.++ +++||||.||+.||..|+..+ .+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 466899999999988 889999999999999999874 4599999998654
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.6e-11 Score=75.73 Aligned_cols=47 Identities=23% Similarity=0.699 Sum_probs=38.8
Q ss_pred CccccccccccccCCCceEEecCCCc-cccccHHHHhcCCCcccccccccccccC
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKHYG 175 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 175 (183)
+...|.||++...+. ..+||||. ||..|+.. ...||+||.++.....
T Consensus 14 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 456799999986554 88999999 99999974 4689999999877544
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.3e-11 Score=82.37 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=39.1
Q ss_pred CccccccccccccCCCceEEec-CCCccccccHHHHhcCC------Ccccc--cccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH------RTCPM--CKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lp-C~H~Fh~~Ci~~Wl~~~------~~CP~--CR~~ 169 (183)
+...|+||++.|.++ ++++ |||.|++.||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356799999999987 7886 99999999999999764 48999 9876
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.1e-11 Score=78.31 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=37.0
Q ss_pred ccccccccccccCCCceEEecCCCc-cccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+||++.+.+. ..+||||. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 44699999997765 77899999 99999965 37899999998764
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.98 E-value=1.7e-10 Score=71.64 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=37.0
Q ss_pred CccccccccccccCCCceEEecCC--C---ccccccHHHHhcC--CCcccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCK--H---EYHKNCIDPWLLE--HRTCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~--H---~Fh~~Ci~~Wl~~--~~~CP~CR~~i~ 171 (183)
+.+.|.||+++.. +.+ ++||. | .||.+|+.+|+.. +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4667999999843 333 68964 4 8999999999975 578999998764
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.98 E-value=9.7e-11 Score=95.58 Aligned_cols=52 Identities=23% Similarity=0.621 Sum_probs=40.4
Q ss_pred CccccccccccccCCCce-----EEecCCCccccccHHHHhcCC-----------Ccccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIV-----RILPCKHEYHKNCIDPWLLEH-----------RTCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v-----~~lpC~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~i~~~ 173 (183)
...+|+||++.+.++..+ .-.+|||.||..|+.+|+.+. .+||.||.++.-.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456799999998873222 234699999999999999752 4699999998754
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.97 E-value=6.7e-11 Score=77.59 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=38.2
Q ss_pred ccccccccccccCCCceEEecCCCc-cccccHHHHhcCCCcccccccccccccC
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKHYG 175 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 175 (183)
...|+||++.+.+. ..+||||. ||..|+..| ..||+||..+.....
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEE
Confidence 34699999986654 88999999 999999876 389999999887543
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.1e-10 Score=78.88 Aligned_cols=50 Identities=18% Similarity=0.571 Sum_probs=40.5
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcC--------CCcccc--cccc--ccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE--------HRTCPM--CKMD--ILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~--------~~~CP~--CR~~--i~~ 172 (183)
..+|+||++++..++.+..++|||.||.+|+..++.. ..+||. ||.. +..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 4569999999987766555689999999999999864 237999 9988 544
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.96 E-value=2.6e-10 Score=85.77 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=43.4
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCC-Ccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKH 173 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~i~~~ 173 (183)
.+...|+||++-|.++ +++||||.|+..||..|+..+ .+||+||.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3467899999999988 888999999999999999874 4799999988654
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.84 E-value=7.2e-10 Score=91.52 Aligned_cols=45 Identities=24% Similarity=0.645 Sum_probs=39.0
Q ss_pred ccccccccccccCCCceEEecCCCc-cccccHHHHhcCCCccccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKHY 174 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~ 174 (183)
...|+||++.+.++ ..+||||. ||..|+..| ..||+||..+....
T Consensus 295 ~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 45799999998765 78899999 999999988 68999999987643
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.80 E-value=1e-09 Score=68.35 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=42.6
Q ss_pred cccccccccccCCCceEEe-cCCCccccccHHHHhcCCCccccccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 174 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~ 174 (183)
..|+||++.+.++ .++ +|||.|.+.||.+|+..+.+||+.+.++...+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 4699999999976 777 89999999999999998889999999886654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.9e-09 Score=84.08 Aligned_cols=49 Identities=22% Similarity=0.511 Sum_probs=40.3
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCC--Ccccc--cccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPM--CKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~--CR~~i~~~ 173 (183)
...|+||++.|.++ ++.+.|||.|++.||..|+..+ .+||+ ||..+...
T Consensus 181 el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 45899999999866 4445899999999999999864 46999 99987653
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.50 E-value=5e-08 Score=65.69 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=39.2
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcC-CCcccccccccccccC
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYG 175 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~~~~~ 175 (183)
.|++|--++. ...|.+||+|.||.+|+..|.++ .++||+||.++..-+.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 3777766655 34599999999999999999855 6789999999876544
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.01 E-value=2.3e-06 Score=67.09 Aligned_cols=50 Identities=18% Similarity=0.459 Sum_probs=40.1
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCC--ccccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCKMDILKHY 174 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~--~CP~CR~~i~~~~ 174 (183)
...|.||.+-...+..+ -.|+|.||..|+..|++.+. +||.|+...+-+.
T Consensus 180 i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 56799999998877322 23999999999999998755 8999999866543
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=41.25 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=34.4
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDIL 171 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~ 171 (183)
..+..|.||.+. ++.+.--.|...||..|+++.+.... .||.|+.+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999864 44333334888999999998887643 5999986543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.16 E-value=0.0019 Score=43.31 Aligned_cols=35 Identities=14% Similarity=0.401 Sum_probs=26.3
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHH-Hh
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDP-WL 157 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~-Wl 157 (183)
+..|.||.+++..+....-++|+|.||..|+.. |-
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 356999998754433334489999999999998 53
No 75
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=95.58 E-value=0.004 Score=38.09 Aligned_cols=50 Identities=30% Similarity=0.640 Sum_probs=33.5
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDILKH 173 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~~~ 173 (183)
.+++.|.+|.+. ++.+.--.|...||..|+.+-+.... .||.|+....+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k~ 60 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhcC
Confidence 346679999864 43322223777899999986554422 499998876654
No 76
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.95 E-value=0.0065 Score=36.38 Aligned_cols=46 Identities=30% Similarity=0.754 Sum_probs=31.5
Q ss_pred CCCccccccccccccCCCceEEecCCCccccccHHHHhcCCC----ccccccc
Q psy4226 120 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKM 168 (183)
Q Consensus 120 ~~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 168 (183)
+.+++.|.+|.+. ++.+.--.|...||..|+.+-+.... .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3446679999875 44333334788899999987554432 4999964
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.47 E-value=0.023 Score=37.57 Aligned_cols=49 Identities=27% Similarity=0.541 Sum_probs=39.8
Q ss_pred cccccccccccCCCceEEecC-CCccccccHHHHhcCCCcccccccccccccCCC
Q psy4226 124 ECCAICIEFYKPSDIVRILPC-KHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 177 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC-~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~~~ 177 (183)
..|--|+-..+ -...| .|.+|..|+...|.....||+|+.+++....+.
T Consensus 29 ~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 29 QFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred ccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 46999998744 25556 699999999998888889999999998876543
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.35 E-value=0.026 Score=36.49 Aligned_cols=34 Identities=21% Similarity=0.692 Sum_probs=24.3
Q ss_pred cCCCccccccccccccCCCceEEec---CCCccccccHHHH
Q psy4226 119 ISGDGECCAICIEFYKPSDIVRILP---CKHEYHKNCIDPW 156 (183)
Q Consensus 119 ~~~~~~~C~ICle~~~~~~~v~~lp---C~H~Fh~~Ci~~W 156 (183)
....++.|.||-. +..+ ..+| |+-+||..|+.+-
T Consensus 11 ~~~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 3446778999953 3334 3566 6889999999985
No 79
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=94.09 E-value=0.0085 Score=36.37 Aligned_cols=50 Identities=28% Similarity=0.691 Sum_probs=34.3
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCC----ccccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDILKHY 174 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~~~~ 174 (183)
+++.|.+|.+. ++.+.--.|...||..|+.+-+...+ .||.|+....+..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~ 57 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKE 57 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTT
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchh
Confidence 35679999875 44333334788899999986554422 4999987766543
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.66 E-value=0.054 Score=35.54 Aligned_cols=47 Identities=23% Similarity=0.603 Sum_probs=31.9
Q ss_pred CCCccccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccc
Q psy4226 120 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 169 (183)
Q Consensus 120 ~~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 169 (183)
..+++.|.+|.+. ++.+.--.|.-.||..|+.+=+...+ .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999975 44332223667899999987665432 59999754
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.60 E-value=0.03 Score=34.03 Aligned_cols=45 Identities=27% Similarity=0.750 Sum_probs=30.6
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 169 (183)
.++.|.+|.+. ++.+.--.|...||..|+.+-+.... .||.|+..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45679999874 43333334777899999987554422 59999753
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.34 E-value=0.036 Score=33.87 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=33.6
Q ss_pred CccccccccccccCC-CceEEecCCCccccccHHHHhc-----CCCccccccccccc
Q psy4226 122 DGECCAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLL-----EHRTCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~-~~v~~lpC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~i~~ 172 (183)
+...|++|...+.++ ..+.--.|..-||..|+.---. ..-.||.|+..-.+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 456799999988643 3344345788899999863221 23469999875443
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.28 E-value=0.023 Score=42.30 Aligned_cols=47 Identities=21% Similarity=0.532 Sum_probs=32.3
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~ 171 (183)
+++.|.+|.+. ++.+.-=.|...||..|+.+-+.... .||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 35669999865 54322223777899999987665532 4999987543
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=93.14 E-value=0.018 Score=43.74 Aligned_cols=47 Identities=26% Similarity=0.558 Sum_probs=31.2
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~ 171 (183)
.++.|.+|.+. ++.+.-=.|...||..|+.+-+...+ .||.|+..-.
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45679999865 43111112677899999987665532 5999986543
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.05 E-value=0.025 Score=35.77 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=35.5
Q ss_pred CCccccccccccccCCCceEEecCCCccccccHHHHhcC----CCccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE----HRTCPMCKMDILKHY 174 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~----~~~CP~CR~~i~~~~ 174 (183)
.+...|.+|.........+.-=.|.--||..|+..-... .-.||.|+..+.+.+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~k 73 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKDK 73 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSCC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhcc
Confidence 345679999887543223322347888999998754432 235999988876654
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=92.39 E-value=0.037 Score=34.17 Aligned_cols=48 Identities=23% Similarity=0.596 Sum_probs=32.3
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCC----ccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~~ 172 (183)
+++.|.||.+. ++.+.--.|...||..|+.+-+.... .||.|+..-.+
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 35679999875 44333334778899999986554422 49999765443
No 87
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.69 E-value=0.062 Score=40.10 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=33.8
Q ss_pred ccccccccccccCCC----ceEEecCCCccccccHHH------Hhc-----CCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSD----IVRILPCKHEYHKNCIDP------WLL-----EHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~----~v~~lpC~H~Fh~~Ci~~------Wl~-----~~~~CP~CR~~i~ 171 (183)
+..|+||...|.+++ .+.--.|..-||..|..- -+. ..-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 456999999999876 333334788899999742 111 1457999987644
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.07 E-value=0.071 Score=30.93 Aligned_cols=44 Identities=25% Similarity=0.645 Sum_probs=28.6
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCC----ccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKM 168 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 168 (183)
.|.||...-..++.+.--.|...||..|+++=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4889987643333333334788999999976454422 4999965
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.86 E-value=0.097 Score=35.54 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=26.4
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 158 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~ 158 (183)
+++.|.||.+.-+..+.+.--.|+..||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 4677999988733222244455899999999988764
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.01 E-value=0.057 Score=35.65 Aligned_cols=48 Identities=27% Similarity=0.559 Sum_probs=31.4
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 169 (183)
+...|.||...-..++.+.-=.|...||..|+.+=+...+ .||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4557999998743322222223788999999985454422 49999764
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.99 E-value=0.095 Score=32.09 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=32.0
Q ss_pred CCccccccccccccC--CCceEEecCCCccccccHHHHhcC-------CCccccccccc
Q psy4226 121 GDGECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLE-------HRTCPMCKMDI 170 (183)
Q Consensus 121 ~~~~~C~ICle~~~~--~~~v~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~i 170 (183)
.++..|.||...... ++.+.--.|.-.||..|+.+-+.. .=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 346679999987543 222222237889999999864422 22599997653
No 92
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.47 E-value=0.24 Score=45.62 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCccccccccccccCCCceEEecCC-CccccccHHHHhcCCCcccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRILPCK-HEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
.+...|+|-++-|.++ +++|-| +.+-+.+|.+|+..+.+||+=|.++...
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 3466799999999988 899997 5899999999999999999999888654
No 93
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.36 E-value=0.28 Score=34.98 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=31.7
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhc---------C--CCcccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---------E--HRTCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~---------~--~~~CP~CR~~ 169 (183)
.++.|.+|-+. ++-+---.|-..||..|+.+=+. . .=.||+|+..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 46779999986 65333334778999999997653 1 2259999854
No 94
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.12 E-value=0.11 Score=34.02 Aligned_cols=55 Identities=20% Similarity=0.469 Sum_probs=35.3
Q ss_pred CccccccccccccCCCceEEe--cCCCccccccHHHHhcC--------CCcccccccccccccCC
Q psy4226 122 DGECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLLE--------HRTCPMCKMDILKHYGF 176 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~l--pC~H~Fh~~Ci~~Wl~~--------~~~CP~CR~~i~~~~~~ 176 (183)
....|.||...-..++...++ .|...||..|+.+=+.. .=.||.|+....+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 345799999864332222222 37889999999876542 22599998766655443
No 95
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=88.11 E-value=0.37 Score=30.10 Aligned_cols=49 Identities=18% Similarity=0.509 Sum_probs=29.6
Q ss_pred CccccccccccccCCCceEEec--CC-CccccccHHHHhcCC----Cccccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLEH----RTCPMCKMDILKHY 174 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lp--C~-H~Fh~~Ci~~Wl~~~----~~CP~CR~~i~~~~ 174 (183)
+...| ||-.... ++.+.-=. |. .-||..|+. |... -.||.|+..-.+..
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k~~ 70 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPSS 70 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSSCC
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccccccC
Confidence 34457 8987643 43222223 55 589999986 4332 25999987655543
No 96
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.04 E-value=0.24 Score=32.97 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=29.4
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcC---CCccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE---HRTCPMCKM 168 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~---~~~CP~CR~ 168 (183)
...| ||-.....+..+.--.|.--||..|+..=... .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 88877665544433347888999998653222 236999974
No 97
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.85 E-value=0.41 Score=31.46 Aligned_cols=48 Identities=19% Similarity=0.501 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceEEec--CC-CccccccHHHHhcC----CCccccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLE----HRTCPMCKMDILKHY 174 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lp--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~i~~~~ 174 (183)
...| ||..... ++.+.-=. |. .-||..|+. +.. +-.||.|+..-.+..
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k~~ 90 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPSS 90 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSSSC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCcCC
Confidence 3457 9988643 43332223 54 579999986 333 225999987655544
No 98
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.88 E-value=0.13 Score=33.69 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=30.5
Q ss_pred CCccccccccccccCCCceEEe---cCCCccccccHHHHhcC--CCcccccccccc
Q psy4226 121 GDGECCAICIEFYKPSDIVRIL---PCKHEYHKNCIDPWLLE--HRTCPMCKMDIL 171 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~~v~~l---pC~H~Fh~~Ci~~Wl~~--~~~CP~CR~~i~ 171 (183)
.+++.|.||.+.-...+. ..+ .|.-.||..|+.+-..- .=.||.|+....
T Consensus 23 ~~~~~C~vC~~~~s~~~~-~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEE-EEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCC-CEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 345689999976321111 233 36778999999753322 124999976543
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.70 E-value=0.3 Score=33.21 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEE-ecCCCccccccHHHHhcCCC----ccccccc
Q psy4226 125 CCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLEHR----TCPMCKM 168 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~-lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 168 (183)
.|.+|.+.-.+++.+.. -.|...||..|+++-+.... .||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 58888875222222222 23788999999987555422 5999975
No 100
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.63 E-value=0.2 Score=31.33 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=29.4
Q ss_pred Cccccccccccc--cCCCceEEecCCCccccccHHHHhcCC--Ccccccccc
Q psy4226 122 DGECCAICIEFY--KPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~--~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~ 169 (183)
+.+.|.||.+.- ..++.+.-=.|.-.||..|+..-..-. =.||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 466799998763 222222222378899999987532211 259999754
No 101
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.39 E-value=0.16 Score=32.34 Aligned_cols=45 Identities=31% Similarity=0.634 Sum_probs=28.3
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCC-----Ccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-----RTCPMCKMD 169 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~ 169 (183)
.|.||...-..++.+.-=.|...||..|+++=|... =.||.|+.+
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 688998653333322222378899999998644431 259999753
No 102
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.77 E-value=0.45 Score=29.88 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=31.8
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHH---------hcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPW---------LLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~W---------l~~~~~CP~CR~~i~~ 172 (183)
...| ||...+..+..+.--.|..-||..|+.-- ....-.||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3457 89888764444444458888999997421 1235579999865433
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=82.61 E-value=0.78 Score=32.10 Aligned_cols=47 Identities=26% Similarity=0.483 Sum_probs=30.2
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHh------c-----CCCcccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL------L-----EHRTCPMCKMDIL 171 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl------~-----~~~~CP~CR~~i~ 171 (183)
.++.|.+|-+. ++-+--=.|-..||.+|+.+=+ + ..=.|++|+..-+
T Consensus 56 ~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 35669999876 5322112367899999999742 1 1226999976544
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=82.05 E-value=0.19 Score=31.32 Aligned_cols=45 Identities=29% Similarity=0.647 Sum_probs=26.4
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCC-----Ccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-----RTCPMCKMD 169 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~ 169 (183)
.|.+|...-..++.+.-=.|...||..|+++=+... =.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 467887542222211111377889999998645431 259999753
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=81.66 E-value=0.23 Score=31.64 Aligned_cols=42 Identities=33% Similarity=0.766 Sum_probs=26.0
Q ss_pred ccccccccccCCCceEEec---CCCccccccHHHHhcCC-----Ccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILP---CKHEYHKNCIDPWLLEH-----RTCPMCKMD 169 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lp---C~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~ 169 (183)
.|.+|...-..+ ..|- |...||..|+.+-|... =.||.|+.+
T Consensus 28 ~C~vC~~~~d~~---~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCc---ceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 467776653222 2333 67889999998755442 259999764
No 106
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.31 E-value=1.3 Score=27.36 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=30.7
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+.|-+.+..++.+ ..-+..||.+|. +|..|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCC
Confidence 45699999998866643 345889999995 68889888764
No 107
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=80.77 E-value=1.3 Score=29.95 Aligned_cols=47 Identities=23% Similarity=0.513 Sum_probs=29.0
Q ss_pred CccccccccccccCCCceEEe--cCCCccccccHHHHhcCCC----cccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLLEHR----TCPMCKMDILKH 173 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~l--pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~~~ 173 (183)
+++.|.+|.+. ++.+.-= .|-..||..|+. |.... .||-|+..+-..
T Consensus 14 ~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 14 HEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 45679999843 4322221 366789999997 54422 488887655443
No 108
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=80.70 E-value=0.44 Score=33.61 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=30.4
Q ss_pred CccccccccccccC--CCceEEecCCCccccccHHHHhcCC--C--cccccccc
Q psy4226 122 DGECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEH--R--TCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~--~~~v~~lpC~H~Fh~~Ci~~Wl~~~--~--~CP~CR~~ 169 (183)
+...|++|..+|.- +....-..|+|.+|..|-..--... . .|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 35679999999943 2233444599999999964211111 1 38888643
No 109
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=79.91 E-value=1.6 Score=28.26 Aligned_cols=54 Identities=13% Similarity=0.298 Sum_probs=35.7
Q ss_pred CCccccccccccccCCC-ceEEecCCCccccccHHHHh-------cCCCccccccccccccc
Q psy4226 121 GDGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWL-------LEHRTCPMCKMDILKHY 174 (183)
Q Consensus 121 ~~~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl-------~~~~~CP~CR~~i~~~~ 174 (183)
.+...|.+|...|..-. .----.||++||..|....+ +..+.|-.|-..+....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence 34567999999987542 11223489999999976532 12346888877666544
No 110
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.36 E-value=1.7 Score=27.25 Aligned_cols=39 Identities=23% Similarity=0.516 Sum_probs=30.0
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-+.+..++.+.. =+..||.+|. +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 4569999999876664443 4788999995 6889988775
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=79.35 E-value=0.15 Score=33.35 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=36.1
Q ss_pred ccccccccccccCCC-ceEEecCCCccccccHHHHhc------CCCcccccccccccccCCCC
Q psy4226 123 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLL------EHRTCPMCKMDILKHYGFVS 178 (183)
Q Consensus 123 ~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl~------~~~~CP~CR~~i~~~~~~~~ 178 (183)
...|.+|...|..-. .----.||++||..|...+.. ..+.|-.|-..+.+...+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~~~~~~ 82 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISKAQAFER 82 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHHHC----
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHHHhhhcc
Confidence 457999999987542 222235899999999876542 13468888777766665543
No 112
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=79.30 E-value=0.28 Score=33.53 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=31.3
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCC----ccccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDILK 172 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~i~~ 172 (183)
.|.||...-..++.+.--.|...||..|+.+=+...+ .||.|+....+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 4888887644443333334788999999986454422 49999776544
No 113
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=78.76 E-value=0.78 Score=35.23 Aligned_cols=45 Identities=29% Similarity=0.647 Sum_probs=24.8
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCC-----Ccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-----RTCPMCKMD 169 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~ 169 (183)
.|.+|...=..++.+.-=.|...||..|+++=+... =.||.|+.+
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 588887643233222222377889999999655431 249999754
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.73 E-value=1.9 Score=29.09 Aligned_cols=32 Identities=22% Similarity=0.646 Sum_probs=22.0
Q ss_pred ccccccccccc------cCCCceEEecCCCccccccHH
Q psy4226 123 GECCAICIEFY------KPSDIVRILPCKHEYHKNCID 154 (183)
Q Consensus 123 ~~~C~ICle~~------~~~~~v~~lpC~H~Fh~~Ci~ 154 (183)
...|.+|+..- ..++.+.-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45699998752 122344444589999999995
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=76.99 E-value=0.44 Score=29.33 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=26.0
Q ss_pred cccccccccccCCCceEEe--cCCCccccccHHHH---hc-----CCCccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPW---LL-----EHRTCPMCKM 168 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~l--pC~H~Fh~~Ci~~W---l~-----~~~~CP~CR~ 168 (183)
..| ||-.....+..+.-= .|..-||..|+.-- .. .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 347 797665555433332 27777999997310 00 1245999975
No 116
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.46 E-value=1.2 Score=28.11 Aligned_cols=47 Identities=19% Similarity=0.515 Sum_probs=29.8
Q ss_pred cccccccccccc-CCCceEEecCCCccccccHHHH---h--cCCCccccccccc
Q psy4226 123 GECCAICIEFYK-PSDIVRILPCKHEYHKNCIDPW---L--LEHRTCPMCKMDI 170 (183)
Q Consensus 123 ~~~C~ICle~~~-~~~~v~~lpC~H~Fh~~Ci~~W---l--~~~~~CP~CR~~i 170 (183)
...| ||...+. .+..+.--.|..-||..|+.-- . ...-.||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4457 9998875 3334444457888999998521 1 1234699998653
No 117
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.32 E-value=0.95 Score=28.57 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=31.7
Q ss_pred ccccccccccccCCCceEEe--cCCCccccccHHHH---------hcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPW---------LLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~l--pC~H~Fh~~Ci~~W---------l~~~~~CP~CR~~i~~~ 173 (183)
...| ||-.....+..+.-= .|..-||..|+.-- ...+-.||.|+..-.+.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 3457 788875555444444 68889999998521 11234699998765443
No 118
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.72 E-value=2.2 Score=26.82 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=29.7
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+-|-+.+...+.+. .=+..||.+|. +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 467999999987665443 45788999995 58888777654
No 119
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.39 E-value=2.7 Score=25.72 Aligned_cols=42 Identities=19% Similarity=0.558 Sum_probs=30.5
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+-|-+.+...+.+ +..-|..||.+|. +|-.|+..+...
T Consensus 11 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTC-EEETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceE-EEeCccEeccccC--------eECCCCCCCCCC
Confidence 56799999998755443 2335788999985 588888877654
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.99 E-value=0.64 Score=31.36 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=27.7
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCC----cccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 169 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 169 (183)
.|.+|...-.+...+.--.|...||..|+++=+.... .||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 4777776633322222223788999999986554422 49998653
No 121
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=74.96 E-value=0.96 Score=27.93 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=5.0
Q ss_pred ccccccccccC
Q psy4226 125 CCAICIEFYKP 135 (183)
Q Consensus 125 ~C~ICle~~~~ 135 (183)
.|..|-..+..
T Consensus 29 ~C~~C~~~L~~ 39 (76)
T 1iml_A 29 KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTCCBCCT
T ss_pred CccccCccCCC
Confidence 44444444443
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.29 E-value=2 Score=29.09 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=22.4
Q ss_pred cccccccccccC-------CCceEEecCCCccccccHHHH
Q psy4226 124 ECCAICIEFYKP-------SDIVRILPCKHEYHKNCIDPW 156 (183)
Q Consensus 124 ~~C~ICle~~~~-------~~~v~~lpC~H~Fh~~Ci~~W 156 (183)
+.|.+|+..-.. ++.+.-..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 459999876421 233444458999999999754
No 123
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.11 E-value=3.7 Score=26.67 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=38.0
Q ss_pred CccccccccccccCCCc--eEE--ecCCCccccccHHHHhc-CCCcccccccccccccCCC
Q psy4226 122 DGECCAICIEFYKPSDI--VRI--LPCKHEYHKNCIDPWLL-EHRTCPMCKMDILKHYGFV 177 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~--v~~--lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~i~~~~~~~ 177 (183)
....|.||-++...... +.+ --|+--.|+.|.+-=.+ .++.||.|+...-..+|-+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCC
Confidence 35679999998654321 222 23677789999875443 3678999999887666654
No 124
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=73.81 E-value=0.65 Score=32.08 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=30.4
Q ss_pred ccccccccccccCCC-ceEEecCCCccccccHHHHhcCCCcccccccc
Q psy4226 123 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMD 169 (183)
Q Consensus 123 ~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~ 169 (183)
...|..|-..|..-. +----.||.+||..|........+.|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 456999999987532 12223589999999987665556778888544
No 125
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.54 E-value=1 Score=27.96 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=29.9
Q ss_pred ccccccccccccCCC-ceEEecCCCccccccHHHHh----cCCCccccccccc
Q psy4226 123 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWL----LEHRTCPMCKMDI 170 (183)
Q Consensus 123 ~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl----~~~~~CP~CR~~i 170 (183)
...| ||-.....++ .+.--.|..-||..|+.--- ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3468 7988765553 44444577789999975321 1234699997643
No 126
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=73.43 E-value=1.7 Score=35.73 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=30.8
Q ss_pred cccccccccccCCCceEEecCCCccccccHHHHhcC---C--Ccccccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE---H--RTCPMCKMDILKH 173 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~---~--~~CP~CR~~i~~~ 173 (183)
-.|++=...+.. +++-..|.|.-|.+- ..|+.. . -.||+|.+.+...
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc--cCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHH
Confidence 479988877664 467778999744443 344432 2 3599998887543
No 127
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=73.32 E-value=1.1 Score=27.67 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=29.3
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHh---cCCCccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL---LEHRTCPMCKM 168 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl---~~~~~CP~CR~ 168 (183)
+...| ||-..+..+..+.--.|..-||..|+.--- ...-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 998876643344444588889999985321 12346999975
No 128
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=72.90 E-value=1.8 Score=35.49 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=30.6
Q ss_pred cccccccccccCCCceEEecCCCccccccHHHHhcC---C--Ccccccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE---H--RTCPMCKMDILKH 173 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~---~--~~CP~CR~~i~~~ 173 (183)
-.|++=...++. ++|-..|.|.-|.+ +..|+.. . -.||+|.+.+...
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc--CCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHH
Confidence 369988777664 46777899974433 2344432 2 3599999887543
No 129
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.70 E-value=3.2 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.565 Sum_probs=28.3
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-+.+... .+..-+..||.+|. +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG---GVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS---EEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeeccc---eEEECccccCCCCC--------ccCCCCCcCC
Confidence 45699999988743 34456889999985 6888888774
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=72.53 E-value=1.1 Score=26.71 Aligned_cols=42 Identities=24% Similarity=0.638 Sum_probs=25.7
Q ss_pred ccccccccccccCCCceEEec--CC-CccccccHHHHhcCC----Cccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLEH----RTCPMCKM 168 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lp--C~-H~Fh~~Ci~~Wl~~~----~~CP~CR~ 168 (183)
...| +|-+... ++.+.-=. |. .-||..|+. +... -.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4456 8988643 43222223 55 589999997 3332 25999965
No 131
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.26 E-value=1.8 Score=31.37 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=30.0
Q ss_pred CccccccccccccCCC-ceEEecCCCccccccHHHHh-----cCCCcccccccc
Q psy4226 122 DGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWL-----LEHRTCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl-----~~~~~CP~CR~~ 169 (183)
+...| +|...+.++. .+.--.|..-||..|+.--- ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 35568 9998875432 33333478889999985211 123469999764
No 132
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.82 E-value=2.3 Score=25.91 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=22.9
Q ss_pred CccccccccccccCCCc-eEEe-cCCCccccccHH
Q psy4226 122 DGECCAICIEFYKPSDI-VRIL-PCKHEYHKNCID 154 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~-v~~l-pC~H~Fh~~Ci~ 154 (183)
....|.+|..++.+++. +.-- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35579999999876543 3333 578889999974
No 133
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.54 E-value=2.4 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=28.8
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+-|-+.+.. +. +..-+..||.+|. +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV--IKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CC--EEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eE--EEECcccccccCC--------EeCCCCCcCCCC
Confidence 4569999988773 32 3345788999995 688888877654
No 134
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.26 E-value=3.3 Score=26.39 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=32.8
Q ss_pred CccccccccccccCCC-ceEEecCCCccccccHHHHh--------cCCCccccccccccc
Q psy4226 122 DGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWL--------LEHRTCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl--------~~~~~CP~CR~~i~~ 172 (183)
+...|.+|...|..-. .----.||++||..|..... +..+.|-.|-..+.+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 3567999999987643 11223489999999976542 112457777655443
No 135
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.76 E-value=3.3 Score=25.73 Aligned_cols=40 Identities=15% Similarity=0.426 Sum_probs=29.5
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+-|-+.+. ++. +..-+..||.+|. +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC--------EeCCCCCccCCC
Confidence 557999999887 332 3346888999984 688898887643
No 136
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.67 E-value=3.7 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.485 Sum_probs=27.8
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+.|-+.+...+. .+..=+..||.+|. +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGA-GVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSC-CEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCce-EEEECCCeEcccCC--------cccccCCcCC
Confidence 4569999888775432 23345788998884 6888888874
No 137
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=70.62 E-value=3.3 Score=26.24 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=32.7
Q ss_pred ccccccccccccCCC-ceEEecCCCccccccHHHHhc------CCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLL------EHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl~------~~~~CP~CR~~i~~~ 173 (183)
...|.+|...|..-. .----.||.+||..|....+. ..+.|-.|-..+.+.
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~ 76 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQR 76 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC-
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHHh
Confidence 456999999988542 112224899999999765431 123587776666543
No 138
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.55 E-value=3.1 Score=26.47 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=30.1
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
....|+-|-+.+. ++ .+..-+..||.+|. +|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GP--FLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SC--EEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ce--EEEECCccccccCC--------ccCCCCCCCCC
Confidence 3557999999885 33 34456889999995 68899888764
No 139
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=70.20 E-value=0.8 Score=27.45 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=27.5
Q ss_pred cCCCcccccccccc-ccCCCceEEecCCCccccccHHHHhcCCC----ccccccc
Q psy4226 119 ISGDGECCAICIEF-YKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKM 168 (183)
Q Consensus 119 ~~~~~~~C~ICle~-~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 168 (183)
...+...|.||+.. |-++---.-.-|.-.||..|-..|-...+ .|-+||+
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34457789999974 44431111122455577777665543322 2777764
No 140
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.64 E-value=3.7 Score=24.78 Aligned_cols=40 Identities=20% Similarity=0.534 Sum_probs=29.1
Q ss_pred ccccccccccccC--CCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~--~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-+.+.. .+. .+..-+..||.+|. +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCC
Confidence 4569999998875 222 33446889999995 6888988775
No 141
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=69.45 E-value=2.1 Score=26.71 Aligned_cols=41 Identities=17% Similarity=0.491 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+.|-+.+..++. +..-+..||.+|. +|-.|+..+...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCC
Confidence 4569999999876663 3446888999985 588888777543
No 142
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=69.42 E-value=0.84 Score=30.72 Aligned_cols=28 Identities=18% Similarity=0.492 Sum_probs=18.0
Q ss_pred EecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 141 ILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 141 ~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
-..||+.|. +. +.....||.|++.-.+.
T Consensus 70 C~~CG~~F~----~~-~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 70 CRKCGFVFK----AE-INIPSRCPKCKSEWIEE 97 (105)
T ss_dssp BTTTCCBCC----CC-SSCCSSCSSSCCCCBCC
T ss_pred hhhCcCeec----cc-CCCCCCCcCCCCCccCC
Confidence 345899991 11 34456799998875543
No 143
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.36 E-value=3.3 Score=25.33 Aligned_cols=38 Identities=18% Similarity=0.499 Sum_probs=25.0
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-..+.. + .+..-+..||.+|. +|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~-~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-R--VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-C--CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecC-e--eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3458888887764 2 23345778888884 5777776665
No 144
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.07 E-value=3 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.486 Sum_probs=27.9
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-+.+.. +. +..=+..||.+|. +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCC
Confidence 4569999988764 33 3345788999985 6888988875
No 145
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.06 E-value=3 Score=28.82 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=23.9
Q ss_pred ccccccccccccCCC-ceEEecCCCccccccHHHH
Q psy4226 123 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPW 156 (183)
Q Consensus 123 ~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~W 156 (183)
...|.+|...|..-. .----.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 456999999987542 1222348999999997543
No 146
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=68.99 E-value=0.58 Score=24.89 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=9.9
Q ss_pred CccccccccccccCC
Q psy4226 122 DGECCAICIEFYKPS 136 (183)
Q Consensus 122 ~~~~C~ICle~~~~~ 136 (183)
++..|++|+.++...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 356677777776654
No 147
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=68.28 E-value=3.4 Score=24.46 Aligned_cols=39 Identities=15% Similarity=0.387 Sum_probs=29.3
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+-|-+.+. ++ .+..=+..||.+|. +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 456999999887 43 34456889999995 68899888764
No 148
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.26 E-value=4.2 Score=25.13 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=29.2
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+-|-+.+.. + .+..-+..||.+|. +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 4579999998775 3 34456889999995 68888887753
No 149
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.17 E-value=3.7 Score=25.39 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=22.6
Q ss_pred cccccccccccCCC-ceEEecCCCccccccHHH
Q psy4226 124 ECCAICIEFYKPSD-IVRILPCKHEYHKNCIDP 155 (183)
Q Consensus 124 ~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~ 155 (183)
..|.+|...|..-. .----.||++||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 46999999987542 112224899999999753
No 150
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=67.54 E-value=1.6 Score=26.23 Aligned_cols=42 Identities=19% Similarity=0.475 Sum_probs=26.9
Q ss_pred cccccccccccCCCceEEecCCCccccccHHHHh-cCCCccccc
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMC 166 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl-~~~~~CP~C 166 (183)
..|--|...+.+....+-..|++.||.+|= ..+ +.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 349999999864321223348999999993 222 223469988
No 151
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.19 E-value=2.8 Score=25.98 Aligned_cols=42 Identities=26% Similarity=0.566 Sum_probs=29.9
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccccC
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYG 175 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~~~ 175 (183)
...|+.|-+.+. ++ .+..-+..||.+|. +|-.|+..|.....
T Consensus 15 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~g~~ 56 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GP--FMVAGEFKYHPECF--------ACMSCKVIIEDGDA 56 (81)
T ss_dssp SCBCTTTCCBCC-SC--CBCCTTCCBCTTSC--------BCTTTCCBCCTTSC
T ss_pred CCcCccCCCCcC-ce--EEEECCceeccccC--------CccCCCCccCCCCc
Confidence 346999999887 32 23345888999985 68899888865333
No 152
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.18 E-value=7.6 Score=24.50 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=29.8
Q ss_pred CccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
....|+-|-+.+.. + .+..-+..||.+|. +|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-A--VVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-C--CEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-c--EEEECCceECccCC--------EecCCCCCCCC
Confidence 34579999998875 2 34446789999995 58888887754
No 153
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=67.15 E-value=2.3 Score=24.49 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=26.2
Q ss_pred cccccccccCCC-ceEEe-cCCCccccccHHHHh----cCCCcccccc
Q psy4226 126 CAICIEFYKPSD-IVRIL-PCKHEYHKNCIDPWL----LEHRTCPMCK 167 (183)
Q Consensus 126 C~ICle~~~~~~-~v~~l-pC~H~Fh~~Ci~~Wl----~~~~~CP~CR 167 (183)
|.+|..++.+++ .+.-- .|.--||..|+.--- ..+-.||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 778988886443 33333 477779999975211 2345699885
No 154
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=66.50 E-value=1.7 Score=25.92 Aligned_cols=42 Identities=21% Similarity=0.621 Sum_probs=24.9
Q ss_pred ccccccccccccCCCceEEec--CC-CccccccHHHHhcCC----Cccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLEH----RTCPMCKM 168 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lp--C~-H~Fh~~Ci~~Wl~~~----~~CP~CR~ 168 (183)
...| ||..... ++.+.-=. |. .-||..|+. +... -.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8988643 42222112 44 579999997 4332 25999965
No 155
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.86 E-value=5.4 Score=23.92 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+-|-+.+..++. .+..-+..||.+|. +|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCC
Confidence 4569999998886433 34446888999985 68888887754
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.64 E-value=5 Score=24.08 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+.|-+.+...+.+ +..=+..||.+|. +|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccCCC
Confidence 34699999988865432 3335788999885 588888776543
No 157
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.32 E-value=4.4 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=23.2
Q ss_pred ccccccccccccCCC-ceEEecCCCccccccHHH
Q psy4226 123 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDP 155 (183)
Q Consensus 123 ~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~ 155 (183)
...|.+|...|..-. .----.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 457999999986532 112234899999999754
No 158
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.07 E-value=4.3 Score=25.11 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=30.6
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+.|-+.+..++.+ +..=+..||.+|. +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 35699999998865543 3345788999995 688888777653
No 159
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=64.47 E-value=2.1 Score=21.86 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=19.7
Q ss_pred cccccccccccCCCceEEecCCCccccccH
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCI 153 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci 153 (183)
+.|+.|-......|. +..=|..||+.|.
T Consensus 4 ~~C~~C~k~Vy~~Ek--~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK--VNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGC--CCSSSSCCCGGGC
T ss_pred CcCCccCCEEeccee--EEECCeEecccCC
Confidence 459999888776653 3345788999883
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=64.35 E-value=5 Score=24.52 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=23.9
Q ss_pred ccccccccccccCCCceEEecC-CCccccccHHHH
Q psy4226 123 GECCAICIEFYKPSDIVRILPC-KHEYHKNCIDPW 156 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC-~H~Fh~~Ci~~W 156 (183)
..-|.||.++ ..++-+.| |-+||..|..+-
T Consensus 8 ~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 4569999997 45677888 789999998764
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.94 E-value=3.9 Score=30.88 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=24.5
Q ss_pred CccccccccccccCCC-ceEEecCCCccccccHHHH
Q psy4226 122 DGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPW 156 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~W 156 (183)
++..|.+|...|..-. .----.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3568999999987542 1222348999999997643
No 162
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.42 E-value=2.2 Score=25.56 Aligned_cols=20 Identities=35% Similarity=0.948 Sum_probs=15.0
Q ss_pred HhcC-CCcccccccccccccC
Q psy4226 156 WLLE-HRTCPMCKMDILKHYG 175 (183)
Q Consensus 156 Wl~~-~~~CP~CR~~i~~~~~ 175 (183)
|+.. .+.||.|+..|.+..|
T Consensus 1 wi~~~~k~CP~C~~~Iek~~G 21 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGG 21 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCS
T ss_pred CccccceECcCCCCeeEeCCC
Confidence 4433 4569999999998776
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=63.10 E-value=5.5 Score=23.70 Aligned_cols=42 Identities=19% Similarity=0.518 Sum_probs=31.0
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+-|-+.+..++.+. ..=+..||.+|. +|-.|+..+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE-EETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEE-EeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 456999999988766432 245778999995 688888887654
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.97 E-value=6.4 Score=25.00 Aligned_cols=41 Identities=22% Similarity=0.575 Sum_probs=30.3
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+-|-+.+...+. +..-+..||.+|. +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 4579999999886653 3456888999985 577777776553
No 165
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.67 E-value=3.3 Score=25.74 Aligned_cols=39 Identities=23% Similarity=0.767 Sum_probs=26.3
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+-|-+.+. ++. +..-+..||.+|. +|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEV--VSALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC-SCC--EEETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEec-cce--EEECCceeCccCC--------ccccCCCCCCC
Confidence 346999999877 332 3345788998884 46666666553
No 166
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.16 E-value=6.4 Score=29.88 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=33.1
Q ss_pred CccccccccccccCCC-ceEEecCCCccccccHHHHhc--------CCCccccccccccc
Q psy4226 122 DGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLL--------EHRTCPMCKMDILK 172 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl~--------~~~~CP~CR~~i~~ 172 (183)
+++.|.+|...|..-. .----.||++||..|...... ..+.|-.|-..+..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 4568999999988542 122234899999999765431 12457777655543
No 167
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.37 E-value=4.3 Score=29.11 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=31.5
Q ss_pred CccccccccccccC--CCceEEecCCCccccccHHHHhcCCC--cccccccc
Q psy4226 122 DGECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~--~~~v~~lpC~H~Fh~~Ci~~Wl~~~~--~CP~CR~~ 169 (183)
+...|++|..+|.. +....-..|+|.+|..|- .|..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 36679999998753 333444569999999997 2443322 38888543
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=60.36 E-value=3.2 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=12.1
Q ss_pred ccccccccccCCCceEEecCCCcccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNC 152 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~C 152 (183)
.|+-|-..+...+.+ +..-+..||.+|
T Consensus 10 ~C~~C~~~I~~~e~~-~~a~~~~~H~~C 36 (123)
T 2l3k_A 10 LCASCDKRIRAYEMT-MRVKDKVYHLEC 36 (123)
T ss_dssp CCSSSSCCCCTTCCC-CCCSSCCCCTTT
T ss_pred cccCCCCeecCCceE-EEECCccccccc
Confidence 355665555543222 112245555555
No 169
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=60.14 E-value=1.7 Score=21.98 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=10.1
Q ss_pred Cccccccccccccc
Q psy4226 161 RTCPMCKMDILKHY 174 (183)
Q Consensus 161 ~~CP~CR~~i~~~~ 174 (183)
.+||+|+...+..+
T Consensus 4 ~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 4 FCCPKCQYQAPDMD 17 (28)
T ss_dssp EECTTSSCEESSHH
T ss_pred ccCccccccCcChH
Confidence 46999988776544
No 170
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=59.05 E-value=7.1 Score=24.89 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=26.8
Q ss_pred ccccccccccccCCCceEEec--CCCccccccHHHHhcC
Q psy4226 123 GECCAICIEFYKPSDIVRILP--CKHEYHKNCIDPWLLE 159 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lp--C~H~Fh~~Ci~~Wl~~ 159 (183)
...|.+|.|.+++.- .+.-| =+|-||..|-+..++.
T Consensus 15 ~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 457999999988753 23333 2799999999988865
No 171
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=59.00 E-value=2.6 Score=27.99 Aligned_cols=12 Identities=33% Similarity=1.104 Sum_probs=10.6
Q ss_pred cccccHHHHhcC
Q psy4226 148 YHKNCIDPWLLE 159 (183)
Q Consensus 148 Fh~~Ci~~Wl~~ 159 (183)
||+.|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
No 172
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=58.99 E-value=2.6 Score=27.94 Aligned_cols=12 Identities=42% Similarity=1.340 Sum_probs=10.6
Q ss_pred cccccHHHHhcC
Q psy4226 148 YHKNCIDPWLLE 159 (183)
Q Consensus 148 Fh~~Ci~~Wl~~ 159 (183)
||+.|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 173
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.66 E-value=6.8 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=28.3
Q ss_pred ccccccccccccC--CCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~--~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+.|-+.+.. .+. .+..-+..||.+|. +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 3469999998875 222 34446788999995 6888887765
No 174
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=58.08 E-value=2.1 Score=35.42 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred ccccccccccccCCC-ceEEecCCCccccccHHHHhc-------CCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLL-------EHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~-~v~~lpC~H~Fh~~Ci~~Wl~-------~~~~CP~CR~~i~ 171 (183)
...|.+|...|..-. ...--.||++||..|....+. ..+.|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 567999999887432 122235899999999876541 1345888866554
No 175
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.47 E-value=6.6 Score=24.10 Aligned_cols=38 Identities=18% Similarity=0.565 Sum_probs=28.4
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-+.+... .+..=+..||.+|. +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCC
Confidence 35699999887653 34456889999985 6888888875
No 176
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=54.50 E-value=7.2 Score=25.95 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=30.1
Q ss_pred cccccccccccCCCceEEe--cCCCccccccHHHHh---c-------CCCccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWL---L-------EHRTCPMCKMDI 170 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~l--pC~H~Fh~~Ci~~Wl---~-------~~~~CP~CR~~i 170 (183)
..|.+|...+.+.+.-+.= .|.--||.+|+.-=- + .+-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4599999998664332222 377789999974110 0 233599997654
No 177
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=54.50 E-value=6.3 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=23.1
Q ss_pred ccccccccccccCCCceEEe---cCCCccccccHHHHhcC
Q psy4226 123 GECCAICIEFYKPSDIVRIL---PCKHEYHKNCIDPWLLE 159 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~l---pC~H~Fh~~Ci~~Wl~~ 159 (183)
+..|.||-+. + .+..- .|...||.+||+..+..
T Consensus 79 ~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 4569999875 4 22222 36778999999998754
No 178
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.29 E-value=6.4 Score=24.30 Aligned_cols=38 Identities=26% Similarity=0.525 Sum_probs=28.5
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-+.+.. + .+..-+..||.+|. +|..|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-R--ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-C--CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-e--eEEECCccccHHhc--------CcccCCCccC
Confidence 4569999998873 2 33446788999985 6999988875
No 179
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.88 E-value=6.3 Score=24.19 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=29.1
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
...|+-|-+.+.. +. +..-+..||.+|. +|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~-~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NY--LSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SC--EEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc-ee--EEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 3469999998875 32 3445788999985 688898887653
No 180
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=53.29 E-value=0.82 Score=30.27 Aligned_cols=41 Identities=17% Similarity=0.431 Sum_probs=26.6
Q ss_pred cccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
..|+.|..++.... ++.+|..|-.. +.....||-|..++.+
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHHH
Confidence 56999988765421 33446667544 4455679999887654
No 181
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=53.28 E-value=8.3 Score=31.88 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=29.9
Q ss_pred ccccccccccccCCCceEEe--cCCCccccccHHHHhcC----------CCcccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLLE----------HRTCPMCKMD 169 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~l--pC~H~Fh~~Ci~~Wl~~----------~~~CP~CR~~ 169 (183)
+..|.+|-+. ++-+.-- .|...||.+||+..+.. .=.|=+|.-.
T Consensus 93 ~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4568888875 4433333 58899999999998833 2258788543
No 182
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=52.62 E-value=4.5 Score=24.26 Aligned_cols=42 Identities=21% Similarity=0.608 Sum_probs=25.2
Q ss_pred ccccccccccccCCCceEEec--CC-CccccccHHHHhcC----CCccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLE----HRTCPMCKM 168 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lp--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~ 168 (183)
...| +|-.... ++.+.-=. |. .-||..|+. +.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 8988632 43222223 44 789999986 322 225999965
No 183
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=52.26 E-value=3.4 Score=23.69 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=25.4
Q ss_pred cccccccCCCceEEecCCCccccccHHHHh---cCCCccccccc
Q psy4226 128 ICIEFYKPSDIVRILPCKHEYHKNCIDPWL---LEHRTCPMCKM 168 (183)
Q Consensus 128 ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl---~~~~~CP~CR~ 168 (183)
||......+..+.--.|+--||..|+.--- ..+-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 677765533444434477789999985311 22346999975
No 184
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=51.82 E-value=11 Score=24.24 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=23.1
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
.|..|...+... .. ...=|..||..|..+ .....|..|...|...
T Consensus 35 ~C~~C~~~L~~~-~~-~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 35 RCAKCLHPLANE-TF-VAKDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp CCSSSCCCTTSS-CC-EEETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred cccccCCCCCcC-ee-ECcCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 456665555322 11 122345566666432 2245688887777643
No 185
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=50.40 E-value=19 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=29.8
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+-|-+.+.... ++..-+..||.+|. +|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc--------CcCcCCCccc
Confidence 357999999877542 33446889999994 6999998886
No 186
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=49.21 E-value=1.8 Score=27.37 Aligned_cols=20 Identities=15% Similarity=0.645 Sum_probs=15.6
Q ss_pred cCCCccccccHHHHhcCCCccc
Q psy4226 143 PCKHEYHKNCIDPWLLEHRTCP 164 (183)
Q Consensus 143 pC~H~Fh~~Ci~~Wl~~~~~CP 164 (183)
.|||.||..|-.+|=. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5899999999998844 4563
No 187
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=48.81 E-value=3.7 Score=25.21 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=10.1
Q ss_pred ccccccccccccCCCCCCC
Q psy4226 163 CPMCKMDILKHYGFVSYLT 181 (183)
Q Consensus 163 CP~CR~~i~~~~~~~~~~~ 181 (183)
||-|+...+-.+|++..+.
T Consensus 31 C~~c~~~YPI~dGIPvmL~ 49 (67)
T 2jny_A 31 NERLNLAYRIDDGIPVLLI 49 (67)
T ss_dssp ETTTTEEEEEETTEECCCS
T ss_pred cCCCCccccCCCCEeeeCh
Confidence 5555555555555555444
No 188
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=48.26 E-value=9.3 Score=27.91 Aligned_cols=40 Identities=20% Similarity=0.516 Sum_probs=29.1
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+.|-+.+..++.+. .=+..||.+|. +|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSCF--------RCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTTC--------BCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhcC--------CccccCCCCCC
Confidence 456999999887665543 34778998884 68888777754
No 189
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=47.82 E-value=1.3 Score=21.09 Aligned_cols=13 Identities=31% Similarity=0.989 Sum_probs=10.0
Q ss_pred ccccccHHHHhcC
Q psy4226 147 EYHKNCIDPWLLE 159 (183)
Q Consensus 147 ~Fh~~Ci~~Wl~~ 159 (183)
.||+.|-.+|+..
T Consensus 6 ffcetcskpwlvg 18 (26)
T 1loi_A 6 FFCETCSKPWLVG 18 (26)
T ss_dssp HHHHTSSCTTGGG
T ss_pred HHHHhcCCchhhh
Confidence 4888898888743
No 190
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.82 E-value=3.8 Score=25.28 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=8.9
Q ss_pred ccccccccccccCCCCCC
Q psy4226 163 CPMCKMDILKHYGFVSYL 180 (183)
Q Consensus 163 CP~CR~~i~~~~~~~~~~ 180 (183)
||-|+...+-.+|++..+
T Consensus 29 C~~cg~~YPI~dGIPvmL 46 (69)
T 2pk7_A 29 SKGAGLAYPIRDGIPVML 46 (69)
T ss_dssp ETTTTEEEEEETTEECCC
T ss_pred cCCCCcEecCcCCeeeeC
Confidence 555555555555544443
No 191
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=47.56 E-value=10 Score=23.02 Aligned_cols=41 Identities=17% Similarity=0.444 Sum_probs=29.4
Q ss_pred ccccccccccccC---CCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 123 GECCAICIEFYKP---SDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 123 ~~~C~ICle~~~~---~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
...|+-|-+.+.. .+. .+..=+..||.+|. +|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCC
Confidence 3569999998874 222 33445788999994 69999888763
No 192
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=41.77 E-value=15 Score=26.19 Aligned_cols=39 Identities=28% Similarity=0.614 Sum_probs=22.2
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
.|+.|-+.+...+.+ ...-++.||.+|. .|-.|+..+..
T Consensus 67 ~C~~C~~~I~~~~~v-~~a~~~~~H~~CF--------~C~~C~~~L~~ 105 (169)
T 2rgt_A 67 KCAACQLGIPPTQVV-RRAQDFVYHLHCF--------ACVVCKRQLAT 105 (169)
T ss_dssp BCTTTCCBCCTTSEE-EEETTEEEEGGGC--------BCTTTCCBCCT
T ss_pred cccccccccCCCcEE-EEcCCceEeeCCC--------cCCCCCCCCCC
Confidence 466666665544322 2234666777774 57777666653
No 193
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=41.54 E-value=13 Score=21.76 Aligned_cols=39 Identities=21% Similarity=0.548 Sum_probs=28.4
Q ss_pred cccccccccccCCCceEEecCCCccc--cccHHHHhcCCCcccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYH--KNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh--~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
..|+-|-+.+..++. .+..-+..|| .+|. +|-.|+.++.
T Consensus 3 ~~C~~C~~~I~~~~~-~v~a~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQ-RVTYNNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSC-EEEETTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCce-EEEECCCccCCCCCCE--------ECCCCCCcCC
Confidence 359999998886432 3344588999 9994 6888888875
No 194
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=41.48 E-value=13 Score=26.99 Aligned_cols=39 Identities=26% Similarity=0.677 Sum_probs=25.9
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
.|+.|-+.+...+.+ +..-++.||.+|. +|-.|+..+..
T Consensus 71 ~C~~C~~~I~~~e~~-i~a~~~~~H~~CF--------~C~~C~~~L~~ 109 (188)
T 1rut_X 71 ACSACGQSIPASELV-MRAQGNVYHLKCF--------TCSTCRNRLVP 109 (188)
T ss_dssp ECTTTCCEECTTSEE-EEETTEEECGGGC--------BCTTTCCBCCT
T ss_pred ccccCCCccccCcEE-EEcCCCEEeCCCC--------eECCCCCCCCC
Confidence 488888887754422 2335788888883 57777766643
No 195
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=41.43 E-value=6.2 Score=24.44 Aligned_cols=46 Identities=22% Similarity=0.502 Sum_probs=28.3
Q ss_pred ccccccccccccCC-CceEEecCCCccccccHHHHhc-----CCCcccccccc
Q psy4226 123 GECCAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLL-----EHRTCPMCKMD 169 (183)
Q Consensus 123 ~~~C~ICle~~~~~-~~v~~lpC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~ 169 (183)
...| ||-..+..+ ..+.--.|.--||..|+.---. ..-.||.|+..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3345 898876533 3333334787899999853211 23469999765
No 196
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=41.10 E-value=7.1 Score=25.35 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=24.3
Q ss_pred ccccccccccccCCCceEEecCC---CccccccHHHHhcC----CCcccc-ccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCK---HEYHKNCIDPWLLE----HRTCPM-CKM 168 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~---H~Fh~~Ci~~Wl~~----~~~CP~-CR~ 168 (183)
...| ||-.... ++.+.-=.|. --||..|+. |.. +-.||. |+.
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 4457 8987533 3322222233 579999985 322 235999 974
No 197
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=39.20 E-value=3.5 Score=26.37 Aligned_cols=28 Identities=25% Similarity=0.721 Sum_probs=19.1
Q ss_pred EEec-CCCccccccHHHHhcCC--Ccccccc
Q psy4226 140 RILP-CKHEYHKNCIDPWLLEH--RTCPMCK 167 (183)
Q Consensus 140 ~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR 167 (183)
+.=| |+|.||..|-.+|=+.| .+|..=+
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~ 74 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQ 74 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHHH
Confidence 3445 99999999999983333 3576543
No 198
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.83 E-value=21 Score=23.96 Aligned_cols=38 Identities=21% Similarity=0.567 Sum_probs=17.4
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
.|+.|-+.+...+.+ +..=++.||.+|. +|-.|+..+.
T Consensus 68 ~C~~C~~~I~~~e~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 105 (131)
T 2xjy_A 68 LCASCDKRIRAYEMT-MRVKDKVYHLECF--------KCAACQKHFC 105 (131)
T ss_dssp ECTTTCCEECTTSEE-EEETTEEEEGGGC--------BCTTTCCBCC
T ss_pred ChhhcCCccCcccee-EeeCCceECccCc--------ccCCCCCCCC
Confidence 355555554433211 1223555555552 4555555553
No 199
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=38.74 E-value=21 Score=23.87 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=31.1
Q ss_pred cccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~~ 173 (183)
..|..|-..+... . ....=|..+|..|..+- ....|+.|...|...
T Consensus 31 F~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 31 FCCFDCDSILAGE-I-YVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp SBCTTTCCBCTTS-E-EEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCcCCCCCCCCcC-E-EEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 4688887776642 1 23345677888887653 356799999998864
No 200
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.64 E-value=16 Score=22.37 Aligned_cols=40 Identities=18% Similarity=0.538 Sum_probs=27.2
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
...|+.|-+.+..++.+ +..=+..||.+|. +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRE-LFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCB-CCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CCcCccCCCccccCcEE-EEeCCccccccCC--------eecCCCCccC
Confidence 34699999988743322 2224788999884 5888887775
No 201
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=37.79 E-value=4.4 Score=24.90 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=17.8
Q ss_pred CcccccccccccccCCCCCCCC
Q psy4226 161 RTCPMCKMDILKHYGFVSYLTN 182 (183)
Q Consensus 161 ~~CP~CR~~i~~~~~~~~~~~~ 182 (183)
-.||-|+...+-.+|++..+.+
T Consensus 27 LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 27 LICKGDRLAFPIKDGIPMMLES 48 (68)
T ss_dssp EEETTTTEEEEEETTEECCCGG
T ss_pred EEcCCCCcEecCCCCeeeeChh
Confidence 3699999999999998877654
No 202
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=37.15 E-value=15 Score=26.19 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=15.6
Q ss_pred EEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 140 RILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 140 ~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
+-..|||.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 334477776533 22347999987753
No 203
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=37.13 E-value=4.2 Score=25.15 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=11.2
Q ss_pred cccccccccccccCCCCCCC
Q psy4226 162 TCPMCKMDILKHYGFVSYLT 181 (183)
Q Consensus 162 ~CP~CR~~i~~~~~~~~~~~ 181 (183)
.||-|+...+-.+|++..+.
T Consensus 28 iC~~cg~~YPI~dGIPvmL~ 47 (70)
T 2js4_A 28 VCNADRLAFPVRDGVPIMLE 47 (70)
T ss_dssp EETTTTEEEEEETTEECCCG
T ss_pred EcCCCCceecCCCCeeeeCh
Confidence 36666666665666555443
No 204
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.12 E-value=28 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.467 Sum_probs=21.6
Q ss_pred cccccccccccCCCceEEecCCCccccccHHHHhcCCCcccccccccc
Q psy4226 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 171 (183)
Q Consensus 124 ~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 171 (183)
..|+-|-+.+...+ .+..-+..||.+|. +|-.|+..|.
T Consensus 4 ~~C~~C~~~I~~~~--~~~a~~~~wH~~CF--------~C~~C~~~L~ 41 (114)
T 1j2o_A 4 LTCGGCQQNIGDRY--FLKAIDQYWHEDCL--------SCDLCGCRLG 41 (114)
T ss_dssp BCBSSSCSCBCSSE--EEECSSSEECTTTC--------CCSSSCSCCC
T ss_pred CCCcCCCCeeCCcE--EEEECchhHHHhcC--------cccccCCchh
Confidence 34777777665431 12224666777763 5666666664
No 205
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=33.51 E-value=12 Score=18.30 Aligned_cols=10 Identities=30% Similarity=0.996 Sum_probs=5.8
Q ss_pred cccccccccc
Q psy4226 162 TCPMCKMDIL 171 (183)
Q Consensus 162 ~CP~CR~~i~ 171 (183)
.||+|...++
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4777765443
No 206
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=33.47 E-value=62 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=23.6
Q ss_pred cccccccccccc--CCCceEEecCCCccccccHHH
Q psy4226 123 GECCAICIEFYK--PSDIVRILPCKHEYHKNCIDP 155 (183)
Q Consensus 123 ~~~C~ICle~~~--~~~~v~~lpC~H~Fh~~Ci~~ 155 (183)
...|..|-..+. ......--.||..+|..|...
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 467999998875 123334445999999999754
No 207
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.89 E-value=3.4 Score=26.38 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=6.1
Q ss_pred ccccccccccC
Q psy4226 125 CCAICIEFYKP 135 (183)
Q Consensus 125 ~C~ICle~~~~ 135 (183)
.|+.|..++..
T Consensus 4 ~CP~C~~~l~~ 14 (81)
T 2jrp_A 4 TCPVCHHALER 14 (81)
T ss_dssp CCSSSCSCCEE
T ss_pred CCCCCCCcccc
Confidence 36666655543
No 208
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.68 E-value=23 Score=23.64 Aligned_cols=48 Identities=6% Similarity=-0.165 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEEecCCCccccccHHHHhcCCCccccccccccc
Q psy4226 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172 (183)
Q Consensus 125 ~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~~ 172 (183)
.|..|-..+.+........=|..||..|..+-+..+..|-.|...|..
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 577776666421011222345677788877755444478888887775
No 209
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=31.07 E-value=6.7 Score=26.29 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=23.7
Q ss_pred cccccccccCCCceEEe-cCCCccccccHHHHhc----C----CCccccccc
Q psy4226 126 CAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLL----E----HRTCPMCKM 168 (183)
Q Consensus 126 C~ICle~~~~~~~v~~l-pC~H~Fh~~Ci~~Wl~----~----~~~CP~CR~ 168 (183)
|..|.++.+.++....- -|...||..|...-.. . .-.||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 44444443333333333 3899999999764211 1 134999975
No 210
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=30.25 E-value=38 Score=24.24 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=16.3
Q ss_pred ccccccccccccCCCceEEecCCCccccccH
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCI 153 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci 153 (183)
...|+-|-+.+...+. +..-|..||.+|.
T Consensus 60 ~~~C~~C~~~I~~~~~--~~a~~~~wH~~CF 88 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFI--LKALDRHWHSKCL 88 (182)
T ss_dssp CCBCBTSSSBCCCSEE--EEETTEEECSSTT
T ss_pred CCcCccCCCCccCcee--EEecCCeEccccC
Confidence 4568888887765321 2223555666553
No 211
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.24 E-value=7.6 Score=31.08 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=30.1
Q ss_pred CccccccccccccCCCceEE--ecCC--CccccccHHHHhcCCCcccccccc
Q psy4226 122 DGECCAICIEFYKPSDIVRI--LPCK--HEYHKNCIDPWLLEHRTCPMCKMD 169 (183)
Q Consensus 122 ~~~~C~ICle~~~~~~~v~~--lpC~--H~Fh~~Ci~~Wl~~~~~CP~CR~~ 169 (183)
....|++|-..-..+ .++. ..=| |.+|.-|-..|--....||.|-.+
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 355699998763322 1110 0123 467788888998778889999775
No 212
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.96 E-value=14 Score=24.47 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy4226 123 GECCAICIEF 132 (183)
Q Consensus 123 ~~~C~ICle~ 132 (183)
++.||+|-.+
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 3446666443
No 213
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.75 E-value=32 Score=24.80 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=6.6
Q ss_pred Ccccccccc
Q psy4226 161 RTCPMCKMD 169 (183)
Q Consensus 161 ~~CP~CR~~ 169 (183)
..||+|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 379999753
No 214
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=26.31 E-value=12 Score=21.84 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=16.1
Q ss_pred ccc--ccccccccccCCCCCCCCC
Q psy4226 162 TCP--MCKMDILKHYGFVSYLTND 183 (183)
Q Consensus 162 ~CP--~CR~~i~~~~~~~~~~~~~ 183 (183)
.|+ -|+...+-.+|++..+.++
T Consensus 28 ~C~~~~c~~~YPI~dGIPvlL~~e 51 (56)
T 2kpi_A 28 ICTGQDCGLAYPVRDGIPVLLVDE 51 (56)
T ss_dssp EECSSSCCCEEEEETTEECCCTTT
T ss_pred EcCCcCCCcEEeeECCEeeeCHHH
Confidence 577 7888888888887766553
No 215
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=26.01 E-value=76 Score=19.46 Aligned_cols=33 Identities=15% Similarity=0.456 Sum_probs=23.4
Q ss_pred ccccccccccccCCCceEEecCCCccccccHHH
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDP 155 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh~~Ci~~ 155 (183)
+-.|-.|.+.-.....-.-+.|.-.||..|+..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 456999986421233446677999999999986
No 216
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.74 E-value=30 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=16.3
Q ss_pred EEecCCCccccccHHHHhcCCC-ccccccccc
Q psy4226 140 RILPCKHEYHKNCIDPWLLEHR-TCPMCKMDI 170 (183)
Q Consensus 140 ~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i 170 (183)
+-..|||.|-.+ .... .||.|...-
T Consensus 75 ~C~~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeCC------CCCCCcCccccCCC
Confidence 444588887752 2345 799997763
No 217
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.64 E-value=54 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.9
Q ss_pred ccccccccccccCCCceEEecCCCccc
Q psy4226 123 GECCAICIEFYKPSDIVRILPCKHEYH 149 (183)
Q Consensus 123 ~~~C~ICle~~~~~~~v~~lpC~H~Fh 149 (183)
...|..|... ++.=.-|.|||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETTTCCEEE
T ss_pred CCcCccccCC---CCeeeeeecCcccc
Confidence 4459999876 44456788999986
No 218
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=24.77 E-value=48 Score=27.47 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=21.6
Q ss_pred CceEEeeccchHHHHHHHhCCceEEE
Q psy4226 1 MSAVFTYKWKGEELARLLDNGTRIIA 26 (183)
Q Consensus 1 ~~av~~~~~~g~~l~~~~~~~~~v~~ 26 (183)
|+++.|++..|+.|++++++|.++.+
T Consensus 196 IP~~~Is~~da~~L~~~l~~g~~~~v 221 (444)
T 3iib_A 196 IPAAAISNPDADLINAMLKRDKEVVI 221 (444)
T ss_dssp CCEEEECHHHHHHHHHHHTTTCCCEE
T ss_pred CCeEEecHHHHHHHHHHHhCCCCeEE
Confidence 68999999999999999987744433
No 219
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.74 E-value=35 Score=24.95 Aligned_cols=8 Identities=38% Similarity=1.090 Sum_probs=6.6
Q ss_pred cccccccc
Q psy4226 162 TCPMCKMD 169 (183)
Q Consensus 162 ~CP~CR~~ 169 (183)
.||+|..+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 79999764
No 220
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=22.47 E-value=32 Score=21.04 Aligned_cols=10 Identities=30% Similarity=1.095 Sum_probs=6.3
Q ss_pred cccccccccc
Q psy4226 162 TCPMCKMDIL 171 (183)
Q Consensus 162 ~CP~CR~~i~ 171 (183)
.||+|.+++.
T Consensus 11 ~CP~Cgkp~~ 20 (68)
T 1lv3_A 11 NCPTCGKTVV 20 (68)
T ss_dssp ECTTTCCEEE
T ss_pred cCCCCCCccc
Confidence 4777766654
Done!