RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4226
(183 letters)
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 102 bits (257), Expect = 2e-29
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 99 AAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 158
+ + ++P+ + + C +C+ ++ ++R+LPC HE+H C+D WL
Sbjct: 1 GSSGSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 58
Query: 159 EHRTCPMCKMDILKHYG 175
+RTCP+C+ D G
Sbjct: 59 ANRTCPICRADSGPSSG 75
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 100 bits (250), Expect = 3e-28
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 99 AAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 158
A+K+++ +P + + G CC IC Y D+ LPC H +HK C+ WL
Sbjct: 17 ASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 159 EHRTCPMCK 167
+ TCP+C+
Sbjct: 76 KSGTCPVCR 84
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 98.6 bits (246), Expect = 6e-28
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 113 KGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
GE+ E C IC+ + + VR LPC H +H+ C+D WL+ ++ CP+C++DI
Sbjct: 4 DGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 97.5 bits (243), Expect = 2e-27
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 115 EDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172
+ E CA+C+E +KP D + I PCKH +H+ C+ WL + CP+C M +L+
Sbjct: 7 GKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 93.3 bits (232), Expect = 9e-26
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 116 DKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
+E G G C +C E Y + VR LPC H +H +CI PWL +H +CP+C+ +
Sbjct: 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 83.2 bits (206), Expect = 6e-22
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 115 EDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172
+ D E C IC++ ILPC H + + CID W HR CP+C++ +
Sbjct: 7 GRVKQLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 76.5 bits (189), Expect = 2e-19
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 120 SGDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 171
DG CA+C+ + + R LP C H +H C+D WL H TCP+C++ ++
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 74.6 bits (184), Expect = 1e-18
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 120 SGDGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
SG C IC+E S + +LPC H H+ C + L E CP+C
Sbjct: 3 SGSSGC-PICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 70.9 bits (174), Expect = 4e-17
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 119 ISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
++ E C IC+E PS+ LPC H + CI W+ ++ TCP+CK+ +
Sbjct: 1 MATVAERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 59.5 bits (144), Expect = 1e-12
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 124 ECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDI 170
+ C C K D V + C H +H C+ W+ ++ CP+C+ D
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 58.0 bits (140), Expect = 4e-12
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 126 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
C IC++ Y ++ C H + C+ L TCP C+ I
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 53.3 bits (128), Expect = 3e-10
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 126 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173
C IC++ Y ++ C H + C+ L TCP C+ I
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 52.1 bits (125), Expect = 6e-10
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 126 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173
C IC++ Y ++ C H + C+ L TCP C+ I
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 50.5 bits (121), Expect = 2e-09
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 172
C+IC + D I C H + K+CI CP C + + +
Sbjct: 18 CSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 49.8 bits (119), Expect = 5e-09
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 114 GEDKEISGDGECCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
+ S CAIC++ P LPCKH + C+ + C +C+ +I
Sbjct: 6 SGNTAPSLTVPECAICLQTCVHPV----SLPCKHVFCYLCVKGASWLGKRCALCRQEI 59
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 50.2 bits (120), Expect = 8e-09
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFVSYLTN 182
C +C ++ D I+ C H + K CI +L + CP+C + + K ++ ++
Sbjct: 17 MCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSD 72
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 50.9 bits (121), Expect = 4e-08
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 102 KALSKIPTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDP 155
P HIK + E+ + C IC E K V+I PC H +C+
Sbjct: 305 GLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTS 361
Query: 156 WLL-EHRTCPMCKMDILKH 173
W E + CP C+ +I
Sbjct: 362 WQESEGQGCPFCRCEIKGT 380
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 47.6 bits (113), Expect = 7e-08
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKH 173
C IC+E + D C +CI WL E R CP C+ +
Sbjct: 25 CFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 46.4 bits (110), Expect = 1e-07
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 126 CAICIEFYK-PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
C IC + ++ P + C+H + ++C C +C
Sbjct: 18 CFICRQAFQNPV----VTKCRHYFCESCALEHFRATPRCYICDQPT 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 46.7 bits (110), Expect = 2e-07
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 124 ECCAIC---------------IEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMC 166
+ CAIC V C H +H +CI WL + CP+
Sbjct: 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 45.6 bits (107), Expect = 5e-07
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 124 ECCAIC---------------IEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMC 166
+ CAIC V C H +H +CI WL + CP+
Sbjct: 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 44.8 bits (105), Expect = 1e-06
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 124 ECCAICIE---------------FYKPSDIVRILPCKHEYHKNCIDPWLLE-----HRTC 163
E C IC+E P + R+ C H +H C+ C
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQC 85
Query: 164 PMCK 167
P CK
Sbjct: 86 PSCK 89
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 44.0 bits (104), Expect = 2e-06
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
C IC E++ + I C H Y CI +L CP C + +
Sbjct: 24 RCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 45.0 bits (106), Expect = 2e-06
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 117 KEISGDGECCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
++ + C IC E F + L C H + CI+ W+ CP+C+ DI
Sbjct: 58 NDVLENELQCIICSEYFIEAV----TLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 41.8 bits (98), Expect = 5e-06
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 4/44 (9%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPMCK 167
C IC C H C+ + + CP C
Sbjct: 18 CNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 42.9 bits (100), Expect = 2e-05
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 17/72 (23%)
Query: 115 EDKEISGDGECCAICIEFYKPSDIVRI-----LPCKHEYHKNCIDPWL-----------L 158
D+E + + C IC + V + C + H C++ W +
Sbjct: 301 LDEEDNEELRCN-ICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEV 359
Query: 159 EHRTCPMCKMDI 170
CP CK +
Sbjct: 360 SFGQCPFCKAKL 371
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 39.0 bits (91), Expect = 5e-05
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE--HRTCPMCK 167
C IC + D V I C + Y CI LLE TCP C
Sbjct: 17 LCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 40.2 bits (93), Expect = 7e-05
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 126 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 174
C IC++ Y ++ C H + C+ L TCP C+ I
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62
Score = 36.7 bits (84), Expect = 0.001
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 104 LSKIPTKHIKGEDKEISGDGECCAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLE 159
+ H + I C IC++ Y ++ C H + C+ L
Sbjct: 53 TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112
Query: 160 HRTCPMCK 167
TCP C+
Sbjct: 113 ANTCPTCR 120
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 38.6 bits (90), Expect = 9e-05
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPMCK 167
C IC + D V I C + Y CI LLE TCP C
Sbjct: 15 LCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 39.6 bits (92), Expect = 1e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 125 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDILKHY 174
C C E Y+P C H K+C+ + +CP C+ D+ ++Y
Sbjct: 80 MCVCCQELVYQPV----TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 36.3 bits (84), Expect = 4e-04
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 125 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILK 172
C C P + C H + ++C+ L C C+ I+K
Sbjct: 17 KCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 36.8 bits (85), Expect = 7e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 125 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDI 170
C IC+E +P LPC H K C + + CP C+ +
Sbjct: 17 QCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 36.4 bits (84), Expect = 0.001
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 167
C+ C + + V + C+H + NC+ + CP+C
Sbjct: 24 RCSRCTNILR--EPVCLGGCEHIFCSNCVSDCI--GTGCPVCY 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 37.8 bits (87), Expect = 0.001
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCK 167
C IC C H C+ + + CP C
Sbjct: 182 ICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 224
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 36.5 bits (84), Expect = 0.001
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 125 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCK 167
C C E ++P C+H K+C+D +CP C+
Sbjct: 54 QCICCQELVFRPI----TTVCQHNVCKDCLDRSFRAQVFSCPACR 94
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 36.0 bits (83), Expect = 0.001
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--------RTCPMCK 167
C +C+ Y + I C+ + C+ ++ +CP
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 35.5 bits (81), Expect = 0.001
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 122 DGECCAICIEFYKPSDI-VRILPCKHEYHKNCIDPWLLEHRT-CPMCK 167
D C +C+E + DI C ++ + C + CP C+
Sbjct: 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 36.9 bits (85), Expect = 0.001
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDILK 172
C IC++ K + + C H + +CI L ++ CP C+ ++
Sbjct: 56 MCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 34.3 bits (79), Expect = 0.002
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 125 CCAICIEFYK-PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 167
C C K P ++LPC H C++ ++ CP+C+
Sbjct: 8 RCQQCQAEAKCP----KLLPCLHTLCSGCLEASGMQ---CPICQ 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.002
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 43/160 (26%)
Query: 58 ISIGDLPR-AVSLTLFQTELI------------FYQQYSSDNIFEIME--LRRLCSAAKK 102
DLPR ++ + +I ++ + D + I+E L L A +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 103 AL----------SKIPTK-------HIKGEDKEISGDGECCAIC-IEFYKPSDIVRILPC 144
+ + IPT + D + + + +E + I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSI 431
Query: 145 KHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV-SYLTND 183
E + + L HR+ I+ HY ++ ++D
Sbjct: 432 YLELKVKLENEYAL-HRS-------IVDHYNIPKTFDSDD 463
Score = 28.3 bits (62), Expect = 1.9
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 55 LIPISIGDLPRAVSLTLFQTELIFYQQYSSDN--IFEIMELRRLCSAAKKALSKIPTKHI 112
+ S L Q +L FY+ Y DN +E RL +A L KI I
Sbjct: 507 IRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYE-----RLVNAILDFLPKIEENLI 560
Query: 113 KGEDKEI 119
+ ++
Sbjct: 561 CSKYTDL 567
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 34.7 bits (80), Expect = 0.003
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 126 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWLLEHR---TCPMCK 167
C IC+E + + ++L C H + C++ L CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 33.5 bits (77), Expect = 0.003
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 167
CAI + P V + + K+ ++ ++ + P+
Sbjct: 5 LCAISGKV--PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITN 45
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 35.9 bits (82), Expect = 0.006
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 65 RAVSLTLF-QTELIFYQQYSSDNIFEIMELRRLCSAAKKALSKIPTKHIKGEDKEISGDG 123
R+ + LF + I ++ + I +L + A++ + ++ D D
Sbjct: 835 RSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVP---DE 891
Query: 124 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 168
+ K D V + K ++ I LL T P +M
Sbjct: 892 FLDPLMYTIMK--DPVILPASKMNIDRSTIKAHLLSDSTDPFNRM 934
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain,
transmembrane,protein turnover conjugation pathway; HET:
NAG; 2.10A {Homo sapiens}
Length = 194
Score = 34.8 bits (79), Expect = 0.008
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 1 MSAVFTYKWKGEELARLLDNGTRIIAKITIASHCNRPYTN 40
+ A+ KG ++ + + G ++ I + + P+ N
Sbjct: 156 IVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKK-HGPWVN 194
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 34.5 bits (78), Expect = 0.010
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 8/130 (6%)
Query: 42 NRSQSPSLVTATDLIPISIGDLPRAVSLTLFQTELIFYQQYSSDNIFEIMELRRLCSAAK 101
S + + + G+L L+ +N + L+ L
Sbjct: 96 QSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPEPATMVNNTDTLKILKVLPYIWN 155
Query: 102 KALSKIPTKHIKGEDKEISGDGE----CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL 157
IP ++ ++ +G C I + Y+ + C H + ++ I +L
Sbjct: 156 DPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYL 213
Query: 158 LEH--RTCPM 165
+ R CP
Sbjct: 214 QGYTTRDCPQ 223
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 33.3 bits (75), Expect = 0.011
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 125 CCAIC---IEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILK 172
C C I+ Y R++PCKH + +C + + CP C + +
Sbjct: 3 FCDKCGLPIKVY-----GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 32.2 bits (73), Expect = 0.014
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 122 DGECCAIC--IEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILK 172
D + C C ++ PS + + C H ++C+D + CP C + K
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 32.0 bits (73), Expect = 0.015
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT---CPMCK 167
C IC++ + V + C H + CI CP+CK
Sbjct: 22 ICPICLDILQ--KPV-TIDCGHNFCLKCITQIGETSCGFFKCPLCK 64
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 32.8 bits (75), Expect = 0.018
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCK 167
C IC+E K + V C H + K C+ L + + CP+CK
Sbjct: 23 ECPICLELIK--EPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 31.9 bits (73), Expect = 0.020
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT-------CPMCK 167
C IC+E + + L C H + CI E T CP+C
Sbjct: 14 TCPICLELLT--EPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 31.5 bits (72), Expect = 0.022
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT---CPMC 166
C++C+E+ K + V I+ C H + K CI W + CP+C
Sbjct: 17 SCSVCLEYLK--EPV-IIECGHNFCKACITRWWEDLERDFPCPVC 58
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 32.6 bits (74), Expect = 0.022
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCK 167
C IC D V CKH + + CI L CP C+
Sbjct: 25 SCQICEHILA--DPVET-SCKHLFCRICILRCLKVMGSYCPSCR 65
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 32.0 bits (73), Expect = 0.024
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT------CPMCK 167
C IC+E K + V C H + + CI +R CP+C+
Sbjct: 21 TCPICLELLK--EPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 31.5 bits (72), Expect = 0.031
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 141 ILPCKHEYHKNCIDPWLLEHRTCPMCKM 168
LP ++ I LL T P +
Sbjct: 29 RLPSGTVMDRSIILRHLLNSPTDPFNRQ 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 31.2 bits (71), Expect = 0.057
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 168
+ D V LP ++ I LL T P +
Sbjct: 31 RDPLMDTLMT--DPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQ 71
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 32.0 bits (72), Expect = 0.060
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 110 KHIKGEDKEISGDGE---CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPM 165
+ I+G D E E C IC+ + + V+ PC H + K CI + + CP+
Sbjct: 2 EEIQGYDVEFDPPLESKYECPICLMALR--EAVQ-TPCGHRFCKACIIKSIRDAGHKCPV 58
Query: 166 CK 167
Sbjct: 59 DN 60
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 30.0 bits (68), Expect = 0.069
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT---CPMC 166
C IC++ + V + C H + CI CP+C
Sbjct: 22 ICPICLDILQ--KPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 30.9 bits (70), Expect = 0.076
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 125 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCK 167
C IC+ + PC H + K CI + + CP+
Sbjct: 20 ECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDN 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 29.3 bits (66), Expect = 0.12
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 122 DGECCAICIEFYKPSDIVRILPCK-----HEYHKNCIDPWLLEHR--TCPMCK 167
D C IC E R C H++C+ WL R C +C
Sbjct: 5 DVPVCWICNE---ELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 29.9 bits (68), Expect = 0.13
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCI------DPWLLEHRTCPMCK 167
C IC+E + L C H + + C+ +CP+C+
Sbjct: 21 TCPICLELLT--QPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 30.5 bits (68), Expect = 0.15
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 125 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDI 170
C+ C +P C H Y C+ L + C C +
Sbjct: 33 LCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 28.6 bits (64), Expect = 0.23
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 115 EDKEISGDGECCAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCKMDI 170
+ + + C +C + V +LPC+H C+ + CPMC+ +
Sbjct: 7 GVEPSEENSKDCVVCQN--GTVNWV-LLPCRHTCLCDGCVK----YFQQCPMCRQFV 56
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 29.0 bits (65), Expect = 0.27
Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 109 TKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCK 167
T+ ++ + +++ + C +C E + + PC H ++C + ++CP+C+
Sbjct: 5 TRVLQEKLRKLK-EAMLCMVCCE--EEINST-FCPCGHTVCCESCAA----QLQSCPVCR 56
Query: 168 MDI 170
+
Sbjct: 57 SRV 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.32
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 24/122 (19%)
Query: 9 WKGEELARLLDNGTRIIAKITIASHCNRPYTNINRSQSPSLVTATDLIP---ISIGDLPR 65
W E + ++ I + + P T++ S + + +P +SI +L +
Sbjct: 289 W--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 66 AV---SLTLFQTELIFYQQYS-----SDNIFEI-----------MELRRLCSAAKKALSK 106
+ + L +Q + + LR+ + + S+
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 107 IP 108
IP
Sbjct: 407 IP 408
Score = 29.2 bits (65), Expect = 0.89
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 32/86 (37%)
Query: 46 SPSLVTATDLIPISIGDLPR------AVSL--TLFQTE----LIFYQQYSSDNIFEIMEL 93
S LV A+DLI DL + A + ++ T L + S +I
Sbjct: 429 SHLLVPASDLI---NKDLVKNNVSFNAKDIQIPVYDTFDGSDL----RVLSGSI-----S 476
Query: 94 RRLCSAA-------KKALSKIPTKHI 112
R+ + T HI
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKAT-HI 501
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 28.4 bits (63), Expect = 0.58
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR------TCPM--CKMDILKH 173
C I E K V+ C H Y ++ I + + CP C ++
Sbjct: 10 CPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR
{Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Length = 175
Score = 28.9 bits (64), Expect = 0.63
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 159 EHRTCPMCKMDILKHYGFV 177
C+M++L+H G
Sbjct: 17 PETLGHYCQMNLLEHPGPK 35
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 27.1 bits (60), Expect = 0.91
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCKMDI 170
C++C + + +I+ H +C +CP+CK +I
Sbjct: 10 CSLCEKRPRDGNII-HGRTGHLVTCFHCARRLKKAGASCPICKKEI 54
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 27.6 bits (61), Expect = 1.00
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE----HRTCPMCK 167
+ + C C + + S ++ C YH C+ P + C C+
Sbjct: 53 ECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCR 102
Score = 24.9 bits (54), Expect = 9.7
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 122 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL 157
G CA+C D C YH C+D +
Sbjct: 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 27.0 bits (60), Expect = 1.1
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 122 DGECCAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCKMDI 170
+ + C IC++ + IV +PC H K C + CPMC I
Sbjct: 24 EEKLCKICMD--RNIAIV-FVPCGHLVTCKQCAE----AVDKCPMCYTVI 66
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
nucleus, phosphorylation, chromatin regulator, UBL
conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
sapiens}
Length = 159
Score = 28.3 bits (63), Expect = 1.1
Identities = 3/27 (11%), Positives = 6/27 (22%), Gaps = 7/27 (25%)
Query: 142 LPCKHEYHKNCIDPWLLEHRTCPMCKM 168
+ H +H + P
Sbjct: 1 MGSSHHHHHHS-------SGLVPRGST 20
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.2
Length = 98
Score = 27.0 bits (60), Expect = 1.3
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 168
I D V + + ++ I LL +T P +
Sbjct: 24 LDPIMSTLMC--DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRS 65
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all
beta, structural genomics, protein structure initiative;
NMR {Streptomyces coelicolor}
Length = 56
Score = 25.9 bits (58), Expect = 1.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 153 IDPWLLEHRTCPMCK 167
++ LLE CP C
Sbjct: 3 LEAGLLEILACPACH 17
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 26.2 bits (57), Expect = 2.5
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 113 KGEDKEISGDGECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLLEHRT-------- 162
G D G C +C + S + C + YH++C P + +
Sbjct: 6 SGADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWY 65
Query: 163 CPMCK 167
C C
Sbjct: 66 CARCT 70
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes
structural genomics, PSI-2, protein structure
initiative; 1.90A {Chromobacterium violaceum} SCOP:
b.171.1.1
Length = 68
Score = 25.6 bits (57), Expect = 2.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 153 IDPWLLEHRTCPMCK 167
+D LE CP+CK
Sbjct: 1 MDAKFLEILVCPLCK 15
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics,
PSI-2, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: b.171.1.1
Length = 67
Score = 25.6 bits (57), Expect = 2.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 153 IDPWLLEHRTCPMCK 167
+DP LLE CP K
Sbjct: 3 LDPQLLEVLACPKDK 17
>2po1_B Probable exosome complex exonuclease 2; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Length = 277
Score = 27.0 bits (60), Expect = 3.2
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 19 DNGTR---IIAKITIASHCNRPYTNINRSQSPSLVTATDLIPISIGDLPRAVSLTLFQTE 75
D IA I + P N ++ + T + P+ + +P V+
Sbjct: 149 DGNLMDAIGIAAIAALLNARVPKVRYN-EETGEVETLDETEPLPVEKIPVPVTFAKIGNI 207
Query: 76 LI 77
L+
Sbjct: 208 LV 209
>2pk7_A Uncharacterized protein; NESG, PLR1, putative
tetraacyldisaccharide-1-P 4-kinase, Q4K structural
genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP:
b.171.1.1
Length = 69
Score = 25.4 bits (56), Expect = 3.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 153 IDPWLLEHRTCPMCK 167
+D LL+ CP+CK
Sbjct: 1 MDTKLLDILACPICK 15
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI,
structure initiative, northeast structural genomics
consort NESG; NMR {Neisseria meningitidis}
Length = 68
Score = 25.2 bits (56), Expect = 3.4
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 153 IDPWLLEHRTCPMCK 167
++ L+ CP+ K
Sbjct: 1 MEKKFLDILVCPVTK 15
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis,
dimer, X-RAY diffraction, structural genomics, NPPSFA;
HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A
2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A*
1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A*
2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Length = 235
Score = 26.7 bits (60), Expect = 3.9
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 51 TATDLIPISIGDLPRAVSLTLFQTEL-IFYQQYSSDNIFEIMELRRLCSAAKKALSKIPT 109
AT + ++P T L Y + + +I+ L R + +
Sbjct: 139 GATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLKNP-MDILNLVRDNMILGVRVKILGD 197
Query: 110 KHIKGEDKEISGDGE 124
+G ++I G
Sbjct: 198 GSFEGIAEDIDDFGR 212
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics
consortium, beta, PSI-2, protein structure initiative;
NMR {Bordetella bronchiseptica RB50}
Length = 70
Score = 25.3 bits (56), Expect = 4.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 153 IDPWLLEHRTCPMCK 167
++ LL+ CP+CK
Sbjct: 1 MESRLLDILVCPVCK 15
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription,
elongation, PAF1 complex, histone H3 methylation, H2B
ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens}
SCOP: b.34.21.1
Length = 153
Score = 26.5 bits (58), Expect = 4.3
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 18/87 (20%)
Query: 25 IAKITIASHCNRPYTNINRSQSPSLVTATDLIPISIGDLPRAVSLTLFQTELIFYQQYSS 84
+A+IT + Y + L + G+ R L S
Sbjct: 71 VAEITGVVETAKVYQLGGTRTNKGLQ-------LRHGNDQRVFRLEFV-----------S 112
Query: 85 DNIFEIMELRRLCSAAKKALSKIPTKH 111
+ F E + A A ++PT
Sbjct: 113 NQEFTESEFMKWKEAMFSAGMQLPTLD 139
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 26.5 bits (58), Expect = 5.7
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 24 IIAKITIASHCNRPYTNINRSQSPSLVTA-TDLIPISIGDLPRAVSLTLFQ 73
IA I H RP ++ + D +P+SI +P VS FQ
Sbjct: 167 SIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQ 217
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3,
transcription elongation, structural genomics, struc
genomics consortium, SGC; 1.80A {Homo sapiens} PDB:
2db9_A
Length = 137
Score = 26.0 bits (57), Expect = 5.8
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 18/87 (20%)
Query: 25 IAKITIASHCNRPYTNINRSQSPSLVTATDLIPISIGDLPRAVSLTLFQTELIFYQQYSS 84
+A+IT + Y + L + G+ R L S
Sbjct: 57 VAEITGVVETAKVYQLGGTRTNKGLQ-------LRHGNDQRVFRLEFV-----------S 98
Query: 85 DNIFEIMELRRLCSAAKKALSKIPTKH 111
+ F E + A A ++PT
Sbjct: 99 NQEFTESEFMKWKEAMFSAGMQLPTLD 125
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 24.8 bits (54), Expect = 6.4
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 114 GEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL-----EHRTCPMCKM 168
G D E C +C ++P+ + C YH C++P L E+ CP CK
Sbjct: 17 GGDPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76
Query: 169 D 169
D
Sbjct: 77 D 77
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 26.5 bits (56), Expect = 6.5
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 115 EDKEISGDGECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDI 170
E + C +C++ K +V +PC H + C R CP+C+ I
Sbjct: 287 EQLRRLQEERTCKVCMD--KEVSVV-FIPCGHLVVCQECAP----SLRKCPICRGII 336
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 24.8 bits (54), Expect = 8.2
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT-----CPMCKMD 169
C +C P + C +H C+DP L + CP C+ D
Sbjct: 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 24.0 bits (52), Expect = 9.3
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 122 DGECCAICIEFYKPSDIVRI-LPCKHEYH-KNCIDPWLLEHRTCPMCKMDI 170
E C IC +P + + H C ++ CP+C+ I
Sbjct: 7 AIEPCVICQG--RPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.429
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,846,244
Number of extensions: 159432
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 117
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)