RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4226
(183 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 67.6 bits (165), Expect = 2e-16
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 122 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 171
DG CA+C+ + + R LP C H +H C+D WL H TCP+C++ ++
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 59.2 bits (143), Expect = 4e-13
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 119 ISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
++ E C IC+E + LPC H + CI W+ ++ TCP+CK+ +
Sbjct: 1 MATVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 53.5 bits (128), Expect = 9e-11
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 117 KEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDI 170
E+ + C IC E K V+I PC H +C+ W + CP C+ +I
Sbjct: 17 CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 53.2 bits (127), Expect = 1e-10
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
C A V C H +H +CI WL + CP+ +
Sbjct: 38 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 83
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 45.3 bits (107), Expect = 7e-08
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
C C K ++LPC H C++ CP+C+
Sbjct: 9 CQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 46.2 bits (108), Expect = 1e-07
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 20/67 (29%)
Query: 124 ECCAICIEFY---------------KPSDIVRILPCKHEYHKNCIDPWL-----LEHRTC 163
E C IC+E P + R+ C H +H C+ C
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQC 85
Query: 164 PMCKMDI 170
P CK
Sbjct: 86 PSCKTIY 92
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 44.8 bits (105), Expect = 1e-07
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 122 DGECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLLE-HRTCPMCKMDILK 172
D + C C + ++++ C H ++C+D + CP C + K
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 42.0 bits (98), Expect = 1e-06
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 126 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 170
C +C+E + DI C ++ + C E+ CP C+
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 42.4 bits (99), Expect = 2e-06
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 120 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR--------TCPMCK 167
S C +C+ Y + I C+ + C+ ++ +CP
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 39.8 bits (92), Expect = 7e-06
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 122 DGECCAICIEFYKPSDIV--RILPCKHEYHKNCIDPWLLEH--RTCPMCK 167
D C IC E H++C+ WL C +C
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 40.4 bits (94), Expect = 9e-06
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKMDI 170
C IC+E K C H + K C+ L + + CP+CK DI
Sbjct: 24 CPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 36.0 bits (83), Expect = 3e-04
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 170
C IC CKH + + CI L + CP C+
Sbjct: 25 SCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 35.5 bits (81), Expect = 6e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
C+ C + V + C+H + NC+ + CP+C
Sbjct: 24 RCSRCTNILRE--PVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPA 65
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 32.4 bits (73), Expect = 0.003
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 170
CAI + + V + + K+ ++ ++ + P+ +
Sbjct: 2 LCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 28.9 bits (64), Expect = 0.096
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 125 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 173
C I +E K D V I+ Y ++ I WL + L H
Sbjct: 10 RCPISLELMK--DPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 26.1 bits (57), Expect = 0.63
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 121 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT----CPMCKMDILK 172
G C +++ C YH +C++P L E CP C LK
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 25.3 bits (55), Expect = 1.1
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT----CPMCK 167
C +C + + ++ C +H C+ P L E CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 25.0 bits (54), Expect = 1.9
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 120 SGDGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRT-----CPMCK 167
SG C C E Y + + C+ +H C+ CP C
Sbjct: 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein
RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 25.5 bits (56), Expect = 2.3
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 18/88 (20%)
Query: 25 IAKITIASHCNRPYTNINRSQSPSLVTATDLIPISIGDLPRAVSLTLFQTELIFYQQYSS 84
+A+IT + Y + L + G+ R L S
Sbjct: 50 VAEITGVVETAKVYQLGGTRTNKGLQ-------LRHGNDQRVFRLEFV-----------S 91
Query: 85 DNIFEIMELRRLCSAAKKALSKIPTKHI 112
+ F E + A A ++PT
Sbjct: 92 NQEFTESEFMKWKEAMFSAGMQLPTLDE 119
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 24.6 bits (53), Expect = 2.4
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 126 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT----CPMCK 167
IC KP D+V C+ +H +C P L + C +C
Sbjct: 7 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCH 52
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 398
Score = 25.8 bits (56), Expect = 4.0
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 17 LLDNGTRIIAKITIASHCNRPYTNINRSQS 46
L+ G AK+ + SH RP + S
Sbjct: 46 ALEQG----AKVILLSHLGRPKGEPSPEFS 71
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 25.8 bits (56), Expect = 4.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 17 LLDNGTRIIAKITIASHCNRPYTNINRSQS 46
L+++G AK+ +ASH RP +
Sbjct: 47 LIEHG----AKVILASHLGRPKGKVVEELR 72
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 59
Score = 23.4 bits (51), Expect = 5.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 153 IDPWLLEHRTCPMCK 167
+DP LLE CP K
Sbjct: 3 LDPQLLEVLACPKDK 17
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 93
Score = 23.5 bits (51), Expect = 8.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 41 INRSQSPSLVTATDLIPISIGDLPRA 66
+ + + P VT D ++ DLP A
Sbjct: 4 LRKVEGPRSVTLPDGSIMTRADLPPA 29
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 390
Score = 24.7 bits (53), Expect = 8.3
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 17 LLDNGTRIIAKITIASHCNRP 37
LL G A + + SH RP
Sbjct: 45 LLAGG----ASLVLLSHLGRP 61
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 24.4 bits (52), Expect = 9.9
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 17 LLDNGTRIIAKITIASHCNRP 37
+L G + SH RP
Sbjct: 46 VLTEG----GSCVLMSHLGRP 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.429
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 720,171
Number of extensions: 32947
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 37
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)