BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4227
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 51/59 (86%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
K+ CKV++PYEAQN+DELT+KE DIV LI++D D GWW+GEL+GR G+FPDNFV +LP
Sbjct: 9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 67
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 51/59 (86%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
K+ CKV++PYEAQN+DELT+KE DIV LI++D D GWW+GEL+GR G+FPDNFV +LP
Sbjct: 3 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 61
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 50/58 (86%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
+ CKV++PYEAQN+DELT+KE DIV LI++D D GWW+GEL+GR G+FPDNFV +LP
Sbjct: 3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 49/57 (85%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ CKV++PYEAQN+DELT+KE DIV LI++D D GWW+GEL+GR G+FPDNFV +L
Sbjct: 8 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
KE C+ L+PY NEDELT +E +I+ LIS++ + GWWKGEL+G+ G+FPDNF +
Sbjct: 6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
P+ +CK LY Y+AQ+ DEL+ DI+ +I D GWW G L G+ GLFP+N+VT
Sbjct: 2 PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDP--SGWWTGRLRGKQGLFPNNYVT 58
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 24 PVLKERCKV--LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
P C+V +Y Y A NEDEL+ + ++ ++++D PD WW+GE++G GLFP N+V
Sbjct: 29 PAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPD--WWQGEINGVTGLFPSNYV 86
Query: 82 TVLPTTDETSIKS 94
+ TTD + S
Sbjct: 87 KM--TTDSSGPSS 97
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT-TD 88
CK LY ++A+ +DEL L++ DIV++ + ++GWW G L+G+ G FP +V LP+
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVII--HEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAG 67
Query: 89 ETSIKSEKPSPA 100
T+ K+ PS
Sbjct: 68 NTATKASGPSSG 79
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3
Domain From Human Cd2ap (Cms) In Complex With A
Proline-Rich Peptide From Human Rin3
Length = 65
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
K +CKVL+ Y QNEDEL LK DI+ + + ++GWW G L+ ++GLFP NFV L
Sbjct: 7 KRQCKVLFEYIPQNEDELELKVGDIIDI--NEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64
Query: 87 T 87
T
Sbjct: 65 T 65
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 6/61 (9%)
Query: 30 CKV--LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
C+V +Y Y AQN+DEL + I+ +++++ PD WWKGE+ G+VGLFP N+V + TT
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPD--WWKGEVSGQVGLFPSNYVKL--TT 58
Query: 88 D 88
D
Sbjct: 59 D 59
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 22 RQPVLKERCKV--LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDN 79
R+ + + C+V +Y Y A NEDEL+ + ++ ++++D PD WW+GE++G GLFP N
Sbjct: 11 RENLYFQGCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPD--WWQGEINGVTGLFPSN 68
Query: 80 FVTVLPTTD 88
+V + +D
Sbjct: 69 YVKMTTDSD 77
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1
Length = 68
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
RC+V + Y QN+DEL LK DI+ ++ ++GWW+G L+G+ G+FP NF+ L
Sbjct: 9 RCQVAFSYLPQNDDELELKVGDIIEVVGE--VEEGWWEGVLNGKTGMFPSNFIKEL 62
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ + LY +EA ++ELT K +I++++ D D WWKGE H +GLFP NFVT
Sbjct: 19 KVRALYDFEAVEDNELTFKHGEIIIVL--DDSDANWWKGENHRGIGLFPSNFVT 70
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+CKVL+ Y QNEDEL LK DI+ + + ++GWW G L+ ++GLFP NFV
Sbjct: 3 QCKVLFEYIPQNEDELELKVGDIIDI--NEEVEEGWWSGTLNNKLGLFPSNFV 53
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT-TD 88
C+V + Y QN+DEL LK DI+ ++ ++GWW+G L+G+ G+FP NF+ L +D
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGE--VEEGWWEGVLNGKTGMFPSNFIKELSGESD 78
Query: 89 ETSIKSEK 96
E I ++
Sbjct: 79 ELGISQDE 86
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
C+ LY +E +NE EL KE DI+ L ++ D+ W++G LHG G FP N+V +L
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQI--DENWYEGMLHGHSGFFPINYVEIL 62
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
C+ LY +E +NE EL KE DI+ L ++ D+ W++G LHG+ G FP N+V +L
Sbjct: 14 CRALYDFEPENEGELGFKEGDIITLTNQ--IDENWYEGMLHGQSGFFPINYVEIL 66
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
Y + A++ EL+L+E D+V + SR D+GWWKGE +GR+G FP +V
Sbjct: 14 YNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+CKVL+ Y QNEDEL L D++ +I + ++GWW G L+ ++GLFP NFV
Sbjct: 6 QCKVLFDYSPQNEDELELIVGDVIDVI--EEVEEGWWSGTLNNKLGLFPSNFV 56
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
V + Y+AQ++DELT+ +I+ I ++ D GWW+G+++GR GLFPDNFV
Sbjct: 6 VEFDYQAQHDDELTISVGEIITNIRKE--DGGWWEGQINGRRGLFPDNFV 53
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 20 RFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDN 79
F P+ + CK LY +E +N+ EL +E D++ L ++ D+ W++G LHG+ G FP +
Sbjct: 6 EFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQI--DENWYEGXLHGQSGFFPLS 63
Query: 80 FVTVL 84
+V VL
Sbjct: 64 YVQVL 68
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
K Y + A++ EL+LKE DI+ ++++ +GWW+GE++GR+G FP N+V
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQ-QGWWRGEIYGRIGWFPSNYV 58
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
+ + +Y +EA ++ELT K +I+ ++ D D WWKGE H +GLFP NFVT
Sbjct: 19 KVRAIYDFEAAEDNELTFKAGEIITVL--DDSDPNWWKGETHQGIGLFPSNFVTA 71
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ K LY Y+AQ DELT KE D +++ +D GWW+GEL+G+ G P N+V
Sbjct: 6 QVKALYDYDAQTGDELTFKEGDTIIVHQKDP--AGWWEGELNGKRGWVPANYV 56
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ K LY Y+AQ DELT KE D +++ +D GWW+GEL+G+ G P N+V
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDP--AGWWEGELNGKRGWVPANYV 55
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 26 LKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ R + LY +EA ++ELT K +++ ++ D D WW+GE H GLFP NFVT
Sbjct: 4 MARRVRALYDFEAVEDNELTFKHGELITVL--DDSDANWWQGENHRGTGLFPSNFVT 58
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
+ LYP+EA+N DE++ DI+ + + + GW G G G FP N+V +P+++
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE 66
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
+ ++AQ+ ELTL++ DIV + DK W +GE HGR+G+FP N+V VLP
Sbjct: 8 FDFQAQSPKELTLQKGDIVYI--HKEVDKNWLEGEHHGRLGIFPANYVEVLP 57
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAP---DKGWWKGEL-HGRVGLFPDNFV 81
++ YEA ++ELTL+ D V ++S+D D+GWW G+L GRVG+FP N+V
Sbjct: 35 VFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
C+ LY +E +N+ EL KE DI+ L ++ D+ W++G +HG G FP N+V V+
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQ--IDENWYEGMIHGESGFFPINYVEVI 58
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
++ + ++AQ+ ELTL++ DIV + DK W +GE HGR+G+FP N+V VL
Sbjct: 10 ARLKFDFQAQSPKELTLQKGDIVYI--HKEVDKNWLEGEHHGRLGIFPANYVEVL 62
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 31 KVLYPYEAQNEDELTLKEEDIV-VLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
K LY YE Q +DEL+ E I+ +L + D G+W+GE +GR+G+FP V L +
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
LY Y+A +DE++ +DI+ I + D GWW+G GR GLFP N+V
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNI--EMIDDGWWRGVCKGRYGLFPANYV 69
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ + Q EL K D++ LI++D P+ WW+G+L+ R G+FP N+V
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPN--WWEGQLNNRRGIFPSNYVA 57
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ + Q EL K D++ LI++D P+ WW+G+L+ R G+FP N+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPN--WWEGQLNNRRGIFPSNYVC 55
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
LY Y+A +DE++ +DI+ I + D GWW+G GR GLFP N+V
Sbjct: 15 LYDYQAAGDDEISFDPDDIITNI--EMIDDGWWRGVCKGRYGLFPANYV 61
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
LY Y+A +DE++ +DI+ I + D GWW+G GR GLFP N+V
Sbjct: 16 LYDYQAAGDDEISFDPDDIITNI--EMIDDGWWRGVCKGRYGLFPANYV 62
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ LY +EA EDEL + ++V ++ D+ + WW G LH ++GLFP N+V
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVL--DSSNPSWWTGRLHNKLGLFPANYVA 56
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ + Q EL K D++ LI++D P+ WW+G+L+ R G+FP N+V
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPN--WWEGQLNNRRGIFPSNYVC 55
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ LY +EA EDEL + ++V ++ D+ + WW G LH ++GLFP N+V
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVL--DSSNPSWWTGRLHNKLGLFPANYVA 58
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVL 84
R + LY YE Q DEL+ K D + + D ++GW KG L +G+VGL+P N+V +
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDELTKM-EDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
QP+ LY +E Q +L + D + +IS+ WW+G+L G+ G+FP N+VT
Sbjct: 16 QPI---EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72
Query: 83 V 83
+
Sbjct: 73 M 73
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ LY +EA EDEL + ++V ++ D+ + WW G LH ++GLFP N+V
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVL--DSSNPSWWTGRLHNKLGLFPANYVA 54
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ LY +EA EDEL + ++V ++ D+ + WW G LH ++GLFP N+V
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVL--DSSNPSWWTGRLHNKLGLFPANYVA 55
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
V Y Y+A ++DELT++ +I+ + + ++GW +GEL+GR G+FPDNFV
Sbjct: 6 VEYDYDAVHDDELTIRVGEIIRNVKK-LQEEGWLEGELNGRRGMFPDNFV 54
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ LY +E + DEL +E DI+ + D D WWKG GR GL P N+V
Sbjct: 11 RALYTFEPRTPDELYFEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ LY +E + DEL ++E DI+ + D D WWKG GR GL P N+V
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYIT--DXSDTNWWKGTSKGRTGLIPSNYVA 67
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGL-FPDNFV 81
P K K L+ Y+AQ EDELT + I+ + + D GWW+G+ G+ L FP N+V
Sbjct: 3 PTFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQ--DGGWWRGDYGGKKQLWFPSNYV 59
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
E+ +Y Y EDEL+ +E I+ +I ++ D GW++G ++G GLFP N+V
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKN--DDGWYEGVMNGVTGLFPGNYV 69
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
V Y Y+A ++DELT++ +I+ + + ++GW +GEL+GR G+FPDNFV
Sbjct: 5 VEYDYDAVHDDELTIRVGEIIRNVKK-LQEEGWLEGELNGRRGMFPDNFV 53
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ LY +E + DEL +E DI+ + D D WWKG GR GL P N+V
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ L+ ++ Q + EL + D + ++ D D WWKG HG+ G+FP N+VT +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVM--DNSDPNWWKGACHGQTGMFPRNYVTAV 57
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And
Tbc1 Domain Containing 3
Length = 78
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT-T 87
R K L +E ++DEL ++ DI+ +IS+ D+ W GEL+G G FP FV VL +
Sbjct: 9 RAKALLDFERHDDDELGFRKNDIITIISQ--KDEHCWVGELNGLRGWFPAKFVEVLDERS 66
Query: 88 DETSIKS 94
E SI S
Sbjct: 67 KEYSIAS 73
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ ++ Q + EL + D + ++ D D WWKG HG+ G+FP N+VT
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVM--DNSDPNWWKGACHGQTGMFPRNYVT 211
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
Y ++A +DEL+ K DI+ +++ + D+ W+K EL+G+ G P N++ + P
Sbjct: 7 YDFKATADDELSFKRGDILKVLNEEC-DQNWYKAELNGKDGFIPKNYIEMKP 57
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ ++ Q + EL + D + ++ D D WWKG HG+ G+FP N+VT
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVM--DNSDPNWWKGACHGQTGMFPRNYVT 55
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ ++ Q + EL + D + ++ D D WWKG HG+ G+FP N+VT
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVM--DNSDPNWWKGACHGQTGMFPRNYVT 55
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDK-GWWKGELHGRVGLFPDNFVTVLP 85
L+ Y A+ DEL+ +E + V ++ RD P++ WW LHG+ G P N+ + P
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP 213
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 22 RQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
Q ++K R + ++ NEDEL++ + DI+ + + GWW+G L+GR G FP N+V
Sbjct: 9 HQLIVKAR----FNFKQTNEDELSVCKGDIIYVTR--VEEGGWWEGTLNGRTGWFPSNYV 62
Query: 82 TVLPTTDETS 91
+ +++ +
Sbjct: 63 REIKSSERSG 72
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ ++ Q + EL + D + ++ D D WWKG HG+ G+FP N+VT
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVM--DNSDPNWWKGACHGQTGMFPRNYVT 53
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG---RVGLFPDNFVTVLP 85
R K +Y +A N+DELT E +++++ + D+ WW G + G R G+FP +FV +L
Sbjct: 12 RVKTIYDCQADNDDELTFIEGEVIIVTGEE--DQEWWIGHIEGQPERKGVFPVSFVHILS 69
Query: 86 TTDETS 91
+ +S
Sbjct: 70 DSGPSS 75
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ ++ NEDEL+ + D V+ ++R + GWW+G L+GR G FP N+V
Sbjct: 15 FNFQQTNEDELSFSKGD-VIHVTR-VEEGGWWEGTLNGRTGWFPSNYV 60
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
V + Y A+ EDEL+L + V+++ + + GWW+G +G+VG FP N+VT
Sbjct: 9 VKFNYMAEREDELSLIKGTKVIVMEKCS--DGWWRGSYNGQVGWFPSNYVT 57
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase
C Gamma-1
Length = 61
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 26 LKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGL-FPDNFV 81
K K L+ Y+AQ EDELT + I+ + + D GWW+G+ G+ L FP N+V
Sbjct: 2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEK--QDGGWWRGDYGGKKQLWFPSNYV 56
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
V + Y A+ EDEL+L + V+++ + + GWW+G +G+VG FP N+VT
Sbjct: 22 VKFNYMAEREDELSLIKGTKVIVMEKCS--DGWWRGSYNGQVGWFPSNYVT 70
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG---RVGLFPDNFVTVL 84
R K +Y +A N+DELT E +++++ + D+ WW G + G R G+FP +FV +L
Sbjct: 3 RVKTIYDCQADNDDELTFIEGEVIIVTGEE--DQEWWIGHIEGQPERKGVFPVSFVHIL 59
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ ++AQ EL L++ DIV + + D+ W++GE HGRVG+FP ++ +L
Sbjct: 14 FDFKAQTLKELPLQKGDIVYIYKQI--DQNWYEGEHHGRVGIFPRTYIELL 62
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3
Domain
Length = 58
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
E + LY ++ Q + +L LK D V L+ + +P+ W+KG +GR G+FP N+V
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPE--WYKGSCNGRTGIFPANYV 54
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 14 KFVRGRRFRQPVL-KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDK-GWWKGELHG 71
+F+ G + + ++ K L+ YE QN+DEL +KE D + +I R+ D+ WW L+
Sbjct: 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLND 215
Query: 72 RVGLFPDNFVTVLP 85
+ G P N + + P
Sbjct: 216 KEGYVPRNLLGLYP 229
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 14 KFVRGRRFRQPVL-KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDK-GWWKGELHG 71
+F+ G + + ++ K L+ YE QN+DEL +KE D + +I R+ D+ WW L+
Sbjct: 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLND 215
Query: 72 RVGLFPDNFVTVLP 85
+ G P N + + P
Sbjct: 216 KEGYVPRNLLGLYP 229
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGL-FPDNFV 81
P K K L+ Y+AQ EDELT + I+ + + + GWW+G+ G+ L FP N+V
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQ--EGGWWRGDYGGKKQLWFPSNYV 59
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
LY + Q ++L ++ DI+ L+ D WWKG++ R+G FP NFV L
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNED--WWKGKIQDRIGFFPANFVQRL 62
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
+ + L + A+ ++ L + DI+ ++ + + WW GE+HG G FP ++V ++P ++
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQQ---ENWWFGEVHGGRGWFPKSYVKIIPGSE 68
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ +Y YEAQ +DE+++ DI+ +I D GW GE G GLFP ++
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGD-DGSGWTYGECDGLKGLFPTSYC 53
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPD-KGWWKGELHGRVGLFPDNFVTVL 84
+ LY DEL DI+ ++ + P+ +GWWK LHGR GL P N + +L
Sbjct: 11 RALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQIL 65
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ ++ NEDEL+ + D V+ ++R + GWW+G +GR G FP N+V
Sbjct: 13 FNFQQTNEDELSFSKGD-VIHVTR-VEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPD-KGWWKGELHGRVGLFPDNFVTVL 84
K LY A++ DEL+ ++ DI+ ++ +D GWW LHGR G+ P N + +L
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE VLY Y+ ++ ELT+K+ DI+ L+ ++ +K WWK E++GR G P ++
Sbjct: 6 KELVLVLYDYQEKSPRELTVKKGDILTLL--NSTNKDWWKIEVNGRQGFVPAAYL 58
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++GR G P +V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKTEVNGRQGFVPAAYV 58
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
Y ++A +DEL+ K DI+ +++ + D+ W+K EL+G+ G P N++ + P
Sbjct: 16 YDFKATADDELSFKRGDILKVLNEEC-DQNWYKAELNGKDGFIPKNYIEMKP 66
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 26 LKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
L + + ++ NEDEL+ + D V+ ++R + GWW+G +GR G FP N+V
Sbjct: 3 LGSVVRAKFNFQQTNEDELSFSKGD-VIHVTR-VEEGGWWEGTHNGRTGWFPSNYV 56
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ ++ NEDEL+ + D V+ ++R + GWW+G +GR G FP N+V
Sbjct: 13 FNFQQTNEDELSFSKGD-VIHVTR-VEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ LY + + +L ++ D++ ++ + WW G ++GR G+FP N+V ++
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVL 84
R + LY Y+ Q +DEL+ K D + + + ++GW +G L G++GL+P N+V +
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEE-DEQGWCRGRLDSGQLGLYPANYVEAI 60
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
Length = 70
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 23 QPVLKE----RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPD 78
QP + + + + LYP+ A+ ++ L + D++ ++ + WW GE+ G+ G FP
Sbjct: 4 QPAMAQGALLQAQALYPWRAKKDNHLNFNKNDVITVLEQQ---DMWWFGEVQGQKGWFPK 60
Query: 79 NFVTVLPTT 87
++V ++
Sbjct: 61 SYVKLISAA 69
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++GR G P +V
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNGRQGFVPAAYV 53
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
V + Y A+ EDEL+L + V ++ + + GWW+G +G++G FP N+V
Sbjct: 5 VKFAYVAEREDELSLVKGSRVTVMEKCS--DGWWRGSYNGQIGWFPSNYV 52
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ + L+ YEA ++L +E DI++++S+ ++ W +GE G+VG+FP FV
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSK--VNEEWLEGESKGKVGIFPKVFV 57
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ DE+T+K+ DI+ L++ + +K WWK E++ R G P +V
Sbjct: 6 KELVLALYDYQEKSPDEVTMKKGDILTLLN--STNKDWWKVEVNDRQGFVPAAYV 58
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ DE+T+K+ DI+ L++ + +K WWK E++ R G P +V
Sbjct: 1 KELVLALYDYQEKSPDEVTMKKGDILTLLN--STNKDWWKVEVNDRQGFVPAAYV 53
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
LY + + +L K+ D++ ++ + WW G +G+ G+FP N+V V
Sbjct: 8 ALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 29 RCKVLYPYEAQNEDE-LTLKEEDIVVLISRDAPDKGWWKGELH-GRVGLFPDNFVTVL 84
RC+ LYP+ + + L +++ L+ PD GWW+GE G G FP ++V +L
Sbjct: 5 RCRTLYPFSGERHGQGLRFAAGELITLL--QVPDGGWWEGEKEDGLRGWFPASYVQLL 60
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
R + L+ + ++ EL K D++ L+SR +K W +G + G G+FP +FV +L
Sbjct: 20 RAEALFDFTGNSKLELNFKAGDVIFLLSR--INKDWLEGTVRGATGIFPLSFVKIL 73
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
V + Y A+ EDEL+L V + + GWW+G +G++G FP N+V
Sbjct: 6 VXFAYVAEREDELSLVXGSRVTV--XEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVL 84
+ LYP+ + E+EL ++ + + +I + D WWK + G+VGL P N+V VL
Sbjct: 21 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 75
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
R + L+ + ++ EL K D++ L+SR +K W +G + G G+FP +FV +L
Sbjct: 6 RAEALFDFTGNSKLELNFKAGDVIFLLSR--INKDWLEGTVRGATGIFPLSFVKIL 59
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVL 84
+ LYP+ + E+EL ++ + + +I + D WWK + G+VGL P N+V VL
Sbjct: 6 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 60
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
R + L+ + ++ EL K D++ L+SR +K W +G + G G+FP +FV +L
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSR--INKDWLEGTVRGATGIFPLSFVKIL 229
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVL 84
+ LYP+ + E+EL ++ + + +I + D WWK + G+VGL P N+V VL
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 64
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l
Mutant
Length = 62
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE VLY Y+ ++ ELT+K+ DI+ L+ ++ +K WWK E++ R G P ++
Sbjct: 6 KELVLVLYDYQEKSPRELTIKKGDILTLL--NSTNKDWWKVEVNDRQGFIPAAYL 58
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVL--ISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
E +V+YPY QN+DEL L D + + + + + +GW G G GL P+N++T
Sbjct: 16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT 75
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ + + E+T+K+ DI+ L++ + +K WWK E++ R G P +V
Sbjct: 1 KELVLALYDYQEKGDSEVTMKKGDILTLLN--STNKDWWKVEVNDRQGFVPAAYV 53
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFV 81
+ +Y Y AQ+EDE++ ++ D +V + D GW G + GR G+ P N++
Sbjct: 10 RAMYDYSAQDEDEVSFRDGDYIVNVQ--PIDDGWMYGTVQRTGRTGMLPANYI 60
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
R K L Y +N +L + D+++L R D+ W++GE++G G+FP + V V+
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILL--RRQLDENWYQGEINGVSGIFPASSVEVI 62
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
E LYPY + +LT E + +++ +D WW G + R G+FP N+V
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE---WWTGSIGDRSGIFPSNYV 59
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETS 91
+ Y + EL+ + D++ L R + D WW+GE +G GL P ++T LP E
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLRLHERASSD--WWRGEHNGMRGLIPHKYIT-LPAGTEKQ 71
Query: 92 I 92
+
Sbjct: 72 V 72
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVL 84
+ +Y Y A + DE++ K+ D +I+ A D+GW G + GR G+ P N+V +
Sbjct: 7 RAMYDYMAADADEVSFKDGD--AIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE VLY Y+ ++ ELT+K+ DI+ L+ ++ +K WWK E++ R G P ++
Sbjct: 6 KELVLVLYDYQEKSPRELTVKKGDILTLL--NSTNKDWWKIEVNDRQGFVPAAYL 58
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P ++V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPASYV 58
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V L
Sbjct: 5 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYVKKL 60
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAGYV 58
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFV 81
K+R V Y + A+++DELT+K D V ++ D K WW +L G+ GL P F+
Sbjct: 6 KKRGIVQYDFMAESQDELTIKSGDKVYILD-DKKSKDWWMCQLVDSGKSGLVPAQFI 61
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V L
Sbjct: 17 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYVKKLAA 74
Query: 87 T 87
Sbjct: 75 A 75
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTV 83
Y Y+A ++ELT E D ++ I + D WW GEL G GLFP N+V++
Sbjct: 11 YDYDAAEDNELTFVENDKIINI--EFVDDDWWLGELEKDGSKGLFPSNYVSL 60
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 6 KELVLALYDYQEKSPGEVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 6 KELVLALYDYQEKSPAEVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTV 83
Y Y+A ++ELT E D ++ I + D WW GEL G GLFP N+V++
Sbjct: 8 YDYDAAEDNELTFVENDKIINI--EFVDDDWWLGELEKDGSKGLFPSNYVSL 57
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ + LY Y AQN DEL L DI+ +I + GWW E +G+ G P +++ L
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEG--EDGWWTVERNGQRGFVPGSYLEKL 63
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTV 83
Y Y+A ++ELT E D ++ I + D WW GEL G GLFP N+V++
Sbjct: 7 YDYDAAEDNELTFVENDKIINI--EFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 5 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 57
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRV-GLFPDNFV 81
K LY Y+A+ DELT ++ +S++ GWWKG+ R+ FP N+V
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEP--GGWWKGDYGTRIQQYFPSNYV 60
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3
Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured
At Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE VLY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P ++
Sbjct: 6 KELVLVLYDYQEKSPREVTIKKGDILTLL--NSTNKDWWKIEVNDRQGFVPAAYL 58
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 36 YEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
++A +DEL+ K DI+ +++ ++ D+ W+K EL+G+ G P N++ +
Sbjct: 9 FKATADDELSFKRGDILKVLNEES-DQNWYKAELNGKDGFIPKNYIEM 55
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVNDRQGYVPAAYV 58
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l
Mutant
Length = 62
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE VLY Y+ ++ E+T+K+ DI+ L++ + +K WWK E+ R G P ++
Sbjct: 6 KELVLVLYDYQEKSPREVTVKKGDILTLLN--STNKDWWKVEVDDRQGFIPAAYL 58
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L++ + +K WWK E+ R G P +V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLLN--STNKDWWKVEVADRQGFVPAAYV 58
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH-GRVGLFPDNFVT 82
LY Y A DELT+ DI+ + +D D WW G + G+ G FP N V
Sbjct: 12 LYDYTANRSDELTIHRGDIIRVFFKDNED--WWYGSIGKGQEGYFPANHVA 60
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
P++ + + + YE + E+ L D+V ++ + + GWW ++ + G P +F+
Sbjct: 8 PIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLEP 65
Query: 84 LPTTDETSIKSEKPSP 99
L + DET E P P
Sbjct: 66 LDSPDET----EDPEP 77
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFV 81
ER V Y + A+++DELT+K D V ++ D K WW +L G+ GL P F+
Sbjct: 3 ERGIVQYDFMAESQDELTIKSGDKVYILD-DKKSKDWWMCQLVDSGKSGLVPAQFI 57
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRV-----GLFPDNFVT 82
E +V Y A ++L+L +++++ ++ GWW+GEL R G FP + V
Sbjct: 8 EIAQVTSAYVASGSEQLSLAPGQLILILKKN--TSGWWQGELQARGKKRQKGWFPASHVK 65
Query: 83 VLPTTDE 89
+L + E
Sbjct: 66 LLGPSSE 72
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKG--ELHGRVGLFPDNFVTVL 84
R + +Y Y A +EDE++ ++ D +V + + D GW G E G G+ P N+V +
Sbjct: 5 RYRAVYDYSAADEDEVSFQDGDTIVNVQQ--IDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
KE LY Y+ ++ E+T+K+ DI+ L++ + +K WWK E+ R G P +V
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLLN--STNKDWWKVEVGDRQGFVPAAYV 58
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKG--ELHGRVGLFPDNFVT 82
+ +Y Y QNEDEL L+E D V ++ + D GW+ G + G FP N+V
Sbjct: 11 RAMYQYRPQNEDELELREGDRVDVMQQ--CDDGWFVGVSRRTQKFGTFPGNYVA 62
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 18 GRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFP 77
G P++ + + + YE + E+ L D+V ++ + + GWW ++ + G P
Sbjct: 1 GSDITGPIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIP 58
Query: 78 DNFVTVLPTTDETSIKSEKPSP 99
+F+ L + DET E P P
Sbjct: 59 ASFLEPLDSPDET----EDPEP 76
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ K LY +A+++ EL+ + + + + GW +G L+G+ GL P+N+V L
Sbjct: 12 KAKALYACKAEHDSELSFTAGTVFDNV-HPSQEPGWLEGTLNGKTGLIPENYVEFL 66
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFV 81
+ LY Y QN+DEL L++ DIV ++ + D GW+ G + G FP N+V
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ +VLY Y+A N EL+L ++++ + S D W GE + G P ++ +L
Sbjct: 19 KARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Rim- Binding Protein 2
Length = 97
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 41 EDELTLKEEDIV-VLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETSIKSEKPS 98
E+EL KE I+ V +DA G+++GE R+GL P N V+ + DE + PS
Sbjct: 39 EEELPFKEGQIIKVYGDKDA--DGFYRGETCARLGLIPCNMVSEIQADDEEMMDQSGPS 95
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFV 81
+ LY Y QN+DEL L++ DIV ++ + D GW+ G + G FP N+V
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEK--CDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWW--KGELHGRVGLFPDNFVT 82
++ +R LY +E +N++EL L E DIV + + +GW + E + GL P+ FV+
Sbjct: 3 IVNQRAVALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAENESGSKTGLVPEEFVS 60
Query: 83 VL 84
+
Sbjct: 61 YI 62
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH-GRVGLFPDNFVTVLPTT 87
CKV+Y Y+A DELT++E +++ +I D + W K G+VG P+ ++ PT+
Sbjct: 16 CKVVYSYKASQPDELTIEEHEVLEVI-EDGDMEDWVKARNKVGQVGYVPEKYLQ-FPTS 72
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK--GELHGRVGLFPDNFVTV 83
KVLY Y +++DE+T+ D + L++RD GW K + G GL P ++ +
Sbjct: 5 KVLYAYVQKDDDEITITPGDKISLVARDTG-SGWTKINNDTTGETGLVPTTYIRI 58
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
Length = 72
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
LY ++A +EL + D + +++ + GW +G L GR G+FP FV + P
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILA--TLEDGWLEGSLKGRTGIFPYRFVKLCPAA 71
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
++ + + + YE + E+ L D+V ++ + + GWW ++ + G P +F+ L
Sbjct: 9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLEPL 66
Query: 85 PTTDETSIKSEKPSP 99
+ DET E P P
Sbjct: 67 DSPDET----EDPEP 77
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 18 GRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP---DKGWWKG------E 68
GR P + + + Y A + DEL LK D+V++I P D+GW G
Sbjct: 133 GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWN 192
Query: 69 LHGRV----GLFPDNFVTVLP 85
H ++ G+FP+NF +P
Sbjct: 193 QHKKLEKCRGVFPENFTERVP 213
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 18 GRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP---DKGWWKG------- 67
GR P + + + Y A + DEL LK D+V++I P D+GW G
Sbjct: 35 GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWN 94
Query: 68 ---ELHGRVGLFPDNF 80
EL G+FP+NF
Sbjct: 95 QHKELEKCRGVFPENF 110
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
+ + A +DEL+ ++ I+ +++ + D W++ EL G+ GL P N++ +
Sbjct: 7 HDFSATADDELSFRKTQILKILNME-DDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
P + + L Y + L K DI+ + +D +K W+ G+L+G+ G FP + V +
Sbjct: 7 PEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENK-WFMGQLNGKEGSFPVDHVEI 65
Query: 84 L 84
L
Sbjct: 66 L 66
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWW--KGELHGRVGLFPDNFVTVL 84
+R LY +E +N++EL L E DIV + + +GW + E + GL P+ FV+ +
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAENESGSKTGLVPEEFVSYI 58
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
+ + A +DEL+ ++ I+ +++ + D W++ EL G+ GL P N++ +
Sbjct: 7 HDFSATADDELSFRKGQILKILNME-DDSNWYRAELDGKEGLIPSNYIEM 55
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 11 LLKKFVRGRRFRQPVLK----ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK 66
L++ R R+ +L+ E + L+ + +E++L K+ DI+ + RD P++ WW
Sbjct: 116 LIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWN 173
Query: 67 GE-LHGRVGLFPDNFV 81
E G+ G+ P +V
Sbjct: 174 AEDSEGKRGMIPVPYV 189
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK--------GELHGRVGLFPD 78
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK G+ + R G P
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVKATANGKTYERQGFVPA 63
Query: 79 NFV 81
+V
Sbjct: 64 AYV 66
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 18 GRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP---DKGWWKG------- 67
GR P + + + Y A + DEL LK D+V++I P D+GW G
Sbjct: 1 GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWN 60
Query: 68 ---ELHGRVGLFPDNFVTVLP 85
+L G+FP+NF +P
Sbjct: 61 QHKKLEKCRGVFPENFTERVP 81
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 11 LLKKFVRGRRFRQPVLK----ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK 66
L++ R R+ +L+ E + L+ + +E++L K+ DI+ + RD P++ WW
Sbjct: 114 LIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWN 171
Query: 67 GE-LHGRVGLFPDNFV 81
E G+ G+ P +V
Sbjct: 172 AEDSEGKRGMIPVPYV 187
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 11 LLKKFVRGRRFRQPVLK----ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK 66
L++ R R+ +L+ E + L+ + +E++L K+ DI+ + RD P++ WW
Sbjct: 114 LIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWN 171
Query: 67 GE-LHGRVGLFPDNFV 81
E G+ G+ P +V
Sbjct: 172 AEDSEGKRGMIPVPYV 187
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDE 89
+ L+ + ++ EL K D++ ++ DA ++ WW G + G FP +FV + DE
Sbjct: 34 EALWDHVTMDDQELGFKAGDVIEVM--DATNREWWWGRVADGEGWFPASFVRLRVNQDE 90
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
E + L+ + ++++L K+ DI+ + RD P++ WW E + G+ G+ P +V
Sbjct: 2 EYVRALFDFNGNDDEDLPFKKGDILKI--RDKPEEQWWNAEDMDGKRGMIPVPYV 54
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
L PY A E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 6 LPPYSAGGR-EVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 51
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK--------GELHGRVGLFPD 78
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK G+ + R G P
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVKITVNGKTYERQGFVPA 63
Query: 79 NFV 81
+V
Sbjct: 64 AYV 66
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK--------GELHGRVGLFPD 78
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK G+ + R G P
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVKITVNGKTYERQGFVPA 58
Query: 79 NFV 81
+V
Sbjct: 59 AYV 61
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
++ + + + YE + E+ L D+V ++ + + GWW ++ + G P +F+ L
Sbjct: 9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLEPL 66
Query: 85 PTTDETSIKSEKPSP 99
+ DET E P P
Sbjct: 67 DSPDET----EDPEP 77
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 29 RCKVLYPYEAQN-------EDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
R LY Y+ + E ELT DI+ + D G++ GEL+G+ GL P NF+
Sbjct: 9 RMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDED-GFYYGELNGQKGLVPSNFL 67
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 35 PYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
PY+ D L LK+ DI+ +IS+ P G W G L+ +VG F +V VL
Sbjct: 22 PYDT---DSLKLKKGDIIDIISK--PPMGTWMGLLNNKVGTFKFIYVDVL 66
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--------HGRVGLFPD 78
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E+ + R G P
Sbjct: 6 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVKATANDKTYERQGFVPA 63
Query: 79 NFV 81
+V
Sbjct: 64 AYV 66
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
E + L+ + +E++L K+ DI+ + RD P++ WW E G+ G+ P +V
Sbjct: 15 EYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWNAEDSEGKRGMIPVPYV 67
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 43 ELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETSIKSEKPSPA 100
EL K D++ ++ DA +K WW G++ G FP +FV + ++ + PS
Sbjct: 26 ELAFKAGDVIKVL--DASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVEEGSGPSSG 81
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETS 91
+ Y + EL+ K+ ++L R + D WW+G +G GL P ++ V T+ +S
Sbjct: 16 FDYVGRTARELSFKKGASLLLYQRASDD--WWEGRHNGIDGLIPHQYIVVQDTSGPSS 71
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 32.7 bits (73), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
E + L+ + +E++L K+ DI+ + RD P++ WW E G+ G+ P +V
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
E + L+ + +E++L K+ DI+ + RD P++ WW E G+ G+ P +V
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
E + L+ + +E++L K+ DI+ + RD P++ WW E G+ G+ P +V
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
E + L+ + +E++L K+ DI+ + RD P++ WW E G+ G+ P +V
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At S19-P20
Length = 63
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 43 ELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 5 EVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 41
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho
Guanine Exchange Factor (Gef) 16
Length = 79
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVL 84
+ ++ + A+ DE+TL++ D+V+++ + + GW GE G G FP++F +
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVLQQ---EDGWLYGERLRDGETGWFPEDFARFI 73
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDE 89
+ L+ + ++ EL K D++ ++ DA ++ WW G + G FP +FV + DE
Sbjct: 39 AEALWDHVTMDDQELGFKAGDVIEVM--DATNREWWWGRVADGEGWFPASFVRLRVNQDE 96
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
Length = 68
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTL-KEEDIVVLISRDAPDKGWWKGELH---GRV--GLF 76
+P + + +PY++ ED+L K+++I+V DA W+ GE G V G+F
Sbjct: 3 EPEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAE---WYFGEYQDSNGDVIEGIF 59
Query: 77 PDNFVTV 83
P +FV V
Sbjct: 60 PKSFVAV 66
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH 70
KE LY Y+ ++ E+T+K+ DI+ L+ ++ +K WWK E++
Sbjct: 21 KELVLALYDYQEKSPREVTMKKGDILTLL--NSTNKDWWKVEVN 62
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTL-KEEDIVVLISRDAPDKGWWKGELH---GRV--GLF 76
+P + + +PY++ ED+L K+++I+V DA W+ GE G V G+F
Sbjct: 4 EPEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAE---WYFGEYQDSNGDVIEGIF 60
Query: 77 PDNFVTV 83
P +FV V
Sbjct: 61 PKSFVAV 67
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 43 ELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
E+T+K+ DI+ L+ ++ +K WWK E++ R G P +V
Sbjct: 7 EVTMKKGDILTLL--NSTNKDWWKVEVNDRQGFVPAAYV 43
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDET 90
+ L+ + ++ EL K D++ + DA ++ WW G + G FP +FV + DE
Sbjct: 71 EALWDHVTXDDQELGFKAGDVIEV--XDATNREWWWGRVADGEGWFPASFVRLRVNQDEP 128
Query: 91 S 91
+
Sbjct: 129 A 129
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 38 AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
A ++ L L+ DIV + + G W+GE++GR GLFP V +
Sbjct: 250 AYDKTALALEVGDIVKVTRMNI--NGQWEGEVNGRKGLFPFTHVKIF 294
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 38 AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
A ++ L L+ DIV + + G W+GE++GR GLFP V +
Sbjct: 250 AYDKTALALEVGDIVKVTRMNI--NGQWEGEVNGRKGLFPFTHVKIF 294
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLPTTDE 89
L+ Y A +EL L++ + + ++ + GW KG L GR G+FP ++ V+P +
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKY--QDGWLKGLSLLTGRTGIFPSDY--VIPVSGP 67
Query: 90 TS 91
+S
Sbjct: 68 SS 69
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 38 AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
A ++ L L+ DIV + + G W+GE++GR GLFP V +
Sbjct: 29 AYDKTALALEVGDIVKVTRMNI--NGQWEGEVNGRKGLFPFTHVKIF 73
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 36 YEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETSIKSE 95
Y N L+ D++ L+ + GW G GR GLFP + V D + K +
Sbjct: 17 YITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQ 76
Query: 96 KPSPAKST 103
+ S+
Sbjct: 77 RSGSGPSS 84
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
+ L+ + +E++L K+ DI+ + RD P++ WW E G+ G+ P +V
Sbjct: 3 VRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWNAEDSEGKRGMIPVPYV 53
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
+ L+ + +E++L K+ DI+ + RD P++ WW E G+ G+ P +V
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRI--RDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 32 VLYPYEAQNEDELTLK-EEDIVVLISRDA-PDKGWWKGELHGRVGLFPDNFV 81
+Y ++A+N +EL++ + + +L +D + WW E++G+ G P N++
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 57
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 58
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 38 AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
A ++ L L+ DIV + + G W+GE++GR GLFP V +
Sbjct: 14 AYDKTALALEVGDIVKVTRMNI--NGQWEGEVNGRKGLFPFTHVKIF 58
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YE++ E +L+ K+ + + +++ D WW GR G P N+V
Sbjct: 5 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLTTGRTGYIPSNYV 54
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
+ Y ++ EL+ K+ ++L R + D WW+G +G GL P ++ V
Sbjct: 13 FDYVGRSARELSFKKGASLLLYHRASED--WWEGRHNGIDGLVPHQYIVV 60
>pdb|2EGE|A Chain A, Solution Structure Of The Third Sh3 Domain From Human
Kiaa1666 Protein
Length = 75
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 38 AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
Q + L L+ D VV++ D+G++ GEL G GL P + +
Sbjct: 25 GQGKGRLALRAGD-VVMVYGPMDDQGFYYGELGGHRGLVPAHLL 67
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 59
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 57
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 59
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 58
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With
A Herpesviral Ligand
Length = 65
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLPT 86
LYPY+ + D+L+ K+ + + ++ WWK + L + G P N+V L T
Sbjct: 12 ALYPYDGIHPDDLSFKKGEKMKVLEEHGE---WWKAKSLLTKKEGFIPSNYVAKLNT 65
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 20 ALYDYEAWTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 69
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 5 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 54
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 36 YEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
Y A +E +L+ + ++++ + D WW GE G G P N V
Sbjct: 16 YAATDETQLSFLRGEKILILRQTTAD--WWWGERAGCCGYIPANHV 59
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 7 LYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 55
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 6 ALYDYEARTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 55
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 69
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK-GELHGRVGLFPDNFVTVLP 85
K+ K Y + A+N EL++ ++D++ ++ + WWK G G P+N + ++
Sbjct: 1 KKYAKSKYDFVARNSSELSVMKDDVLEILD---DRRQWWKVRNASGDSGFVPNNILDIMR 57
Query: 86 T 86
T
Sbjct: 58 T 58
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ++L+ K+ + +I+ D WW+ G+ G P N+V
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQIINNTEGD--WWEARSIATGKSGYIPSNYV 81
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 27 KERCKV-LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRV-GLFPDNFVT 82
KER V +Y ++ +L+L+ D VV I D W++G L H + G+FP +F+
Sbjct: 16 KERHGVAIYNFQGSGAPQLSLQIGD-VVRIQETCGD--WYRGYLIKHKXLQGIFPKSFIH 72
Query: 83 VLPTTDETSIKSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKE 132
+ T E +E PA+ + +T ++ K L + +KKE
Sbjct: 73 IKEVTVEKRRNTENIIPAEIP---LAQEVTTTLWEWGSIWKQLYVASKKE 119
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLTTGQTGYIPSNYV 61
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 90 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLSTGQTGYIPSNYVA 140
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 12 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLTTGQTGYIPSNYV 61
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 8 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLTTGQTGYIPSNYVA 58
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLSTGQTGYIPSNYV 56
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA+ ++L+ K+ + +I+ D WW+ G+ G P N+V
Sbjct: 10 ALYDYEARTTEDLSFKKGERFQIINNTEGD--WWEARSIATGKNGYIPSNYV 59
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Hypothetical Protein Flj21522
Length = 68
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWW--KGELHGRVGLFPDNFVTVL 84
+ +VLY +EA+N ELT+ + + + ++ K WW K E GR G P N + L
Sbjct: 9 KMQVLYEFEARNPRELTVVQGEKLEVLDH---SKRWWLVKNE-AGRSGYIPSNILEPL 62
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YEA ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 7 LYDYEAWTEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYV 55
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVT 82
LY YEA + ++L+ ++ D +V++ WWK + G P N+V
Sbjct: 14 ALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVA 63
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLSTGQTGYIPSNYV 56
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For
Irtks-Sh3 And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 27 KERCKVLYPYEA-QNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTV 83
K++ K ++P+ A N+ L+ + D++ L+ + D GW GE + G FP ++ +
Sbjct: 6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD-GWLYGEHDVSKARGWFPSSYTKL 64
Query: 84 L 84
L
Sbjct: 65 L 65
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLSTGQTGYIPSNYVA 57
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVT 82
LY YEA + ++L+ ++ D +V++ WWK + G P N+V
Sbjct: 13 ALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVA 62
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFV 81
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V
Sbjct: 7 ALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLSTGQTGYIPSNYV 56
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVT 82
LY YEA + ++L+ ++ D +V++ WWK + G P N+V
Sbjct: 7 ALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVA 56
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL---HGRVGLFPDNFV 81
Y Y+A+ DEL+L+ D V ++ +GW++G + G+FP +++
Sbjct: 17 FYNYDARGADELSLQIGDTVHILE---TYEGWYRGYTLRKKSKKGIFPASYI 65
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
LY YEA ED+L+ + + +++ D WW+ G G P N+V
Sbjct: 5 ALYDYEAITEDDLSFHKGEKFQILNSSEGD--WWEARSLTTGETGYIPSNYVA 55
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVT 82
LY YEA + ++L+ ++ D +V++ WWK + G P N+V
Sbjct: 30 ALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVA 79
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVT 82
LY YEA + ++L+ ++ D +V++ WWK + G P N+V
Sbjct: 15 LYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVA 63
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVT 82
LY YEA + ++L+ ++ D +V++ WWK + G P N+V
Sbjct: 6 LYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVA 54
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 31 KVLYPYEAQNEDELT-LKEEDIVVLISRDAPDKGWWK-GELHGRVGLFPDNFV 81
K+LY + A+N +EL+ LK+E + VL + WWK G+ G P N +
Sbjct: 11 KILYDFTARNANELSVLKDEVLEVL----EDGRQWWKLRSRSGQAGYVPCNIL 59
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKG-ELHGRVGLFPDNFVTVLPTT 87
+ K LYPY+A ++D + E +L D + WWK +G G+ P N+V ++
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQVSDIEGR-WWKARRANGETGIIPSNYVQLIDGP 65
Query: 88 DET 90
+E
Sbjct: 66 EEM 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,042,698
Number of Sequences: 62578
Number of extensions: 161331
Number of successful extensions: 580
Number of sequences better than 100.0: 234
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 237
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)