Query psy4227
Match_columns 157
No_of_seqs 181 out of 1594
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:05:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 99.6 9.2E-16 2E-20 91.4 5.9 49 32-82 1-49 (49)
2 PF07653 SH3_2: Variant SH3 do 99.5 2.5E-14 5.5E-19 87.1 6.4 54 29-84 1-55 (55)
3 KOG2070|consensus 99.4 2.6E-13 5.6E-18 112.8 4.2 58 29-88 19-76 (661)
4 KOG2199|consensus 99.4 1.4E-13 3E-18 111.8 1.6 59 25-85 213-271 (462)
5 PF00018 SH3_1: SH3 domain; I 99.4 1.4E-12 3.1E-17 77.1 5.6 46 31-78 1-48 (48)
6 KOG1029|consensus 99.3 5.9E-13 1.3E-17 115.3 4.1 61 27-89 1053-1113(1118)
7 KOG1118|consensus 99.3 6.2E-13 1.3E-17 104.9 2.9 59 27-87 306-364 (366)
8 smart00326 SH3 Src homology 3 99.3 1.2E-11 2.6E-16 74.6 6.8 55 28-84 3-58 (58)
9 cd00174 SH3 Src homology 3 dom 99.3 2.4E-11 5.2E-16 72.3 6.4 51 30-82 2-53 (54)
10 KOG4225|consensus 99.3 1.6E-11 3.6E-16 100.8 7.4 59 28-88 231-289 (489)
11 KOG4226|consensus 99.2 1.2E-11 2.6E-16 96.6 5.2 58 29-88 109-166 (379)
12 KOG0162|consensus 99.2 1.1E-11 2.4E-16 107.2 4.1 55 28-84 1052-1106(1106)
13 KOG4348|consensus 99.2 2.7E-11 5.7E-16 99.7 6.1 61 27-87 261-321 (627)
14 KOG2996|consensus 99.2 3.5E-11 7.5E-16 102.0 5.0 63 23-85 801-863 (865)
15 KOG4348|consensus 99.1 8.9E-12 1.9E-16 102.5 1.1 61 27-89 100-160 (627)
16 KOG1029|consensus 99.1 5.9E-11 1.3E-15 103.1 5.3 62 28-89 694-755 (1118)
17 KOG1264|consensus 99.1 4.6E-11 1E-15 104.4 3.6 83 8-92 751-838 (1267)
18 KOG4226|consensus 99.1 1.3E-10 2.8E-15 90.8 4.6 63 27-89 191-254 (379)
19 KOG2856|consensus 99.1 2.8E-11 6.2E-16 97.6 0.7 56 28-84 415-471 (472)
20 KOG4225|consensus 99.0 3.3E-10 7.2E-15 93.2 3.7 53 29-83 434-488 (489)
21 KOG4792|consensus 98.8 3.2E-09 6.9E-14 81.1 3.3 59 28-88 125-184 (293)
22 KOG2546|consensus 98.8 2.9E-09 6.2E-14 87.5 2.9 56 29-86 425-480 (483)
23 KOG0515|consensus 98.8 2.3E-09 4.9E-14 90.4 2.1 62 25-86 681-743 (752)
24 KOG3655|consensus 98.7 3.5E-09 7.5E-14 88.0 1.4 57 26-84 426-483 (484)
25 KOG3601|consensus 98.7 1.7E-08 3.7E-13 76.3 3.2 63 20-84 156-218 (222)
26 KOG1843|consensus 98.5 6.5E-08 1.4E-12 79.3 3.1 57 27-83 416-472 (473)
27 KOG3875|consensus 98.5 1.7E-08 3.6E-13 80.2 -0.5 61 27-87 268-333 (362)
28 KOG1702|consensus 98.5 1.6E-07 3.4E-12 70.9 3.9 57 26-84 206-264 (264)
29 KOG3523|consensus 98.2 1.1E-07 2.4E-12 81.3 -1.9 60 28-89 609-670 (695)
30 KOG4278|consensus 98.2 2E-06 4.3E-11 74.9 4.5 59 29-88 92-150 (1157)
31 KOG3557|consensus 98.1 2E-06 4.2E-11 74.2 2.5 64 25-91 498-562 (721)
32 KOG2528|consensus 98.1 2.3E-06 5.1E-11 71.0 2.6 61 28-89 3-64 (490)
33 KOG4773|consensus 98.1 5E-07 1.1E-11 72.9 -1.4 64 24-89 172-235 (386)
34 KOG3632|consensus 98.0 5E-06 1.1E-10 74.7 4.3 62 26-88 1137-1206(1335)
35 KOG2222|consensus 97.9 1.4E-06 3E-11 73.4 -1.3 58 28-87 549-606 (848)
36 KOG4575|consensus 97.8 3.1E-05 6.8E-10 67.0 4.5 60 27-89 8-70 (874)
37 KOG3771|consensus 97.5 5.9E-05 1.3E-09 63.2 2.7 56 26-82 399-454 (460)
38 KOG1451|consensus 97.5 0.00013 2.8E-09 62.8 4.3 56 28-84 757-812 (812)
39 KOG4429|consensus 97.4 5.7E-05 1.2E-09 60.1 1.3 55 28-84 364-418 (421)
40 KOG3775|consensus 97.4 0.00012 2.5E-09 60.1 2.5 61 28-90 263-325 (482)
41 KOG4792|consensus 97.3 0.00052 1.1E-08 52.9 5.1 58 28-87 228-287 (293)
42 KOG3725|consensus 97.3 5.5E-05 1.2E-09 59.3 -0.2 57 28-84 318-374 (375)
43 KOG0609|consensus 97.2 0.00015 3.3E-09 61.7 1.4 55 27-83 214-280 (542)
44 KOG0197|consensus 97.0 0.00032 7E-09 59.4 1.5 56 27-84 11-69 (468)
45 KOG3632|consensus 96.9 0.0035 7.6E-08 57.1 7.2 62 27-89 447-515 (1335)
46 KOG3601|consensus 96.8 0.00016 3.5E-09 55.0 -1.7 53 30-83 3-55 (222)
47 KOG3565|consensus 96.3 0.001 2.2E-08 58.7 -0.1 60 25-85 576-637 (640)
48 PF14603 hSH3: Helically-exten 95.3 0.035 7.6E-07 36.6 4.0 44 40-85 29-73 (89)
49 KOG0199|consensus 95.0 0.026 5.6E-07 50.5 3.6 52 31-83 378-431 (1039)
50 PF08239 SH3_3: Bacterial SH3 94.6 0.089 1.9E-06 31.0 4.4 36 45-82 18-55 (55)
51 KOG3812|consensus 93.8 0.025 5.5E-07 46.2 1.0 47 30-78 61-117 (475)
52 smart00287 SH3b Bacterial SH3 93.3 0.21 4.5E-06 30.2 4.3 36 44-81 25-61 (63)
53 PRK10884 SH3 domain-containing 93.0 0.16 3.4E-06 39.0 4.1 41 44-85 48-89 (206)
54 PF06347 SH3_4: Bacterial SH3 92.3 0.41 8.8E-06 28.3 4.5 35 44-81 19-53 (55)
55 KOG2996|consensus 91.2 0.16 3.5E-06 44.4 2.5 47 41-88 624-672 (865)
56 KOG0040|consensus 90.5 0.0031 6.7E-08 59.6 -8.8 59 27-87 968-1026(2399)
57 KOG3705|consensus 88.0 0.52 1.1E-05 39.7 3.0 54 28-83 510-565 (580)
58 KOG4384|consensus 81.7 0.86 1.9E-05 37.5 1.6 59 29-89 138-198 (361)
59 PRK13914 invasion associated s 80.7 2.8 6E-05 36.1 4.4 38 44-83 103-141 (481)
60 COG3103 SH3 domain protein [Si 78.8 4.2 9.1E-05 31.2 4.4 41 44-85 48-89 (205)
61 PF12913 SH3_6: SH3 domain of 76.0 8.6 0.00019 23.0 4.3 33 45-78 22-54 (54)
62 smart00743 Agenet Tudor-like d 75.5 5.5 0.00012 23.8 3.5 23 45-69 2-24 (61)
63 PF11302 DUF3104: Protein of u 71.7 6 0.00013 25.4 3.1 27 43-69 3-33 (75)
64 KOG2422|consensus 60.4 4.9 0.00011 35.5 1.4 27 130-156 75-101 (665)
65 KOG1314|consensus 58.2 25 0.00054 29.3 5.0 47 40-89 330-388 (414)
66 KOG3580|consensus 53.3 26 0.00056 31.5 4.6 50 29-78 506-562 (1027)
67 PF05641 Agenet: Agenet domain 38.6 51 0.0011 20.2 3.2 24 46-69 1-25 (68)
68 PF03894 XFP: D-xylulose 5-pho 34.1 2 4.2E-05 32.2 -4.4 37 41-78 52-89 (179)
69 PF06375 BLVR: Bovine leukaemi 32.0 15 0.00033 26.8 0.0 8 61-68 20-27 (154)
70 KOG2422|consensus 30.4 16 0.00034 32.4 -0.2 6 148-153 96-101 (665)
71 PRK13545 tagH teichoic acids e 29.2 70 0.0015 28.3 3.5 41 49-89 375-419 (549)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.63 E-value=9.2e-16 Score=91.43 Aligned_cols=49 Identities=49% Similarity=1.072 Sum_probs=44.3
Q ss_pred EecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCee
Q psy4227 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82 (157)
Q Consensus 32 al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~ 82 (157)
|+|+|.+..++||+|.+||+|.|+.+ .++|||.|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEK--SDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEE--SSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEe--CCCCEEEEEECCEEEEECHHhCC
Confidence 78999999999999999999999976 68899999999999999999985
No 2
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.53 E-value=2.5e-14 Score=87.09 Aligned_cols=54 Identities=35% Similarity=0.874 Sum_probs=47.5
Q ss_pred eEEEecCCCCCCCCCCccCCCCEEEEE-EecCCCCCeEEEEeCCeEEEEcCCCeeec
Q psy4227 29 RCKVLYPYEAQNEDELTLKEEDIVVLI-SRDAPDKGWWKGELHGRVGLFPDNFVTVL 84 (157)
Q Consensus 29 ~~~al~df~~~~~~eLs~~~Gd~i~vl-~~~~~~~gWw~g~~~g~~G~fP~~yv~~~ 84 (157)
+++|++||.+..+++|+|.+||+|.|+ .. ..++||.|+..|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~--~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEK--DDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEE--CSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEee--cCCCEEEEEECCcEEEEcHHHEEEC
Confidence 589999999999999999999999999 55 4679999999999999999999864
No 3
>KOG2070|consensus
Probab=99.39 E-value=2.6e-13 Score=112.78 Aligned_cols=58 Identities=29% Similarity=0.789 Sum_probs=53.5
Q ss_pred eEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCC
Q psy4227 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88 (157)
Q Consensus 29 ~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~ 88 (157)
.++|-|.|.+.+.|||+|.+||+|.|... .+.|||.|.++|+.||||++||..+....
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~--eeGGWWEGTlng~TGWFPsnYV~eik~e~ 76 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQV--EEGGWWEGTLNGRTGWFPSNYVREIKSEK 76 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEe--ccCcceeccccCccCccchHHHHHHhhcC
Confidence 68999999999999999999999999976 58899999999999999999999987443
No 4
>KOG2199|consensus
Probab=99.37 E-value=1.4e-13 Score=111.77 Aligned_cols=59 Identities=41% Similarity=0.852 Sum_probs=53.7
Q ss_pred CCcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecC
Q psy4227 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85 (157)
Q Consensus 25 ~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~ 85 (157)
.+.+.|+|||||++.+.+||+|..||+|.|++. .+..||+|.+.+..|+||++||...-
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~--s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDD--SDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEccc--CCcchhccccCCcccccchhhhhhhh
Confidence 445689999999999999999999999999954 78899999999999999999998765
No 5
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.37 E-value=1.4e-12 Score=77.11 Aligned_cols=46 Identities=37% Similarity=0.894 Sum_probs=40.9
Q ss_pred EEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe--CCeEEEEcC
Q psy4227 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPD 78 (157)
Q Consensus 31 ~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~fP~ 78 (157)
+|+|+|.+...+||+|.+||.|.|+.. .+.+||.|+. +++.||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEK--SDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEE--SSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEe--cCCCEEEEEECCCCcEEEeeC
Confidence 689999999999999999999999986 5779999996 479999995
No 6
>KOG1029|consensus
Probab=99.35 E-value=5.9e-13 Score=115.30 Aligned_cols=61 Identities=39% Similarity=0.828 Sum_probs=54.5
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~ 89 (157)
...++++|||.++.+|||+|.+||+|.|+.+ .+..||.|..+|..|+||+|||..+....+
T Consensus 1053 v~qviamYdY~AqndDELsF~kgdiI~Vlnk--depeWW~Ge~ng~sGLFPSNYV~k~ttd~d 1113 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELSFKKGDIINVLNK--DEPEWWSGERNGKSGLFPSNYVQKQTTDGD 1113 (1118)
T ss_pred cceeEEeeccccCCcccccccCCCEEEecCC--CChhhhcccccCccccCccccccccccCCC
Confidence 3568999999999999999999999999977 688999999999999999999977665543
No 7
>KOG1118|consensus
Probab=99.33 E-value=6.2e-13 Score=104.92 Aligned_cols=59 Identities=42% Similarity=0.878 Sum_probs=54.3
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~ 87 (157)
..+|+|+|||++.+..||.|..||+|.|+.. .+.+||.|+..|..|+||.+||+++.+.
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~Q--IdenWyeG~~~g~sG~FPvnYv~vlvpl 364 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQ--IDENWYEGEKHGESGMFPVNYVEVLVPL 364 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhh--cCcchhhheecCccCccccceeEEeccC
Confidence 3589999999999999999999999999965 7899999999999999999999988654
No 8
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.30 E-value=1.2e-11 Score=74.56 Aligned_cols=55 Identities=45% Similarity=1.015 Sum_probs=49.3
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeC-CeEEEEcCCCeeec
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH-GRVGLFPDNFVTVL 84 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~-g~~G~fP~~yv~~~ 84 (157)
..++|+|+|.+...++|+|.+||.|.++.. ...+||.++.. ++.||||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~--~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEK--SDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEc--CCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 468999999999999999999999999965 47899999975 99999999999753
No 9
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.25 E-value=2.4e-11 Score=72.31 Aligned_cols=51 Identities=45% Similarity=1.064 Sum_probs=46.2
Q ss_pred EEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCC-eEEEEcCCCee
Q psy4227 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG-RVGLFPDNFVT 82 (157)
Q Consensus 30 ~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g-~~G~fP~~yv~ 82 (157)
++++|+|.+...++|+|.+||.|.++.. ...|||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~--~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEK--SDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEc--CCCCeEEEEECCCCEEEEccccCc
Confidence 6899999999999999999999999965 578999999755 99999999986
No 10
>KOG4225|consensus
Probab=99.25 E-value=1.6e-11 Score=100.76 Aligned_cols=59 Identities=37% Similarity=0.858 Sum_probs=54.4
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCC
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~ 88 (157)
..++|+|+|.++...||.|.+||+|.|+.+ .+..|+.|+.+|+.|+||++||++++...
T Consensus 231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rk--vD~nWyeGEhhGr~GifP~sYvE~~~~~e 289 (489)
T KOG4225|consen 231 RAARALFDFEAQTPKELPFNKGDIVYILRK--VDQNWYEGEHHGRVGIFPASYVEILTPRE 289 (489)
T ss_pred chhhheeccccCCccccccCCCCEEEEEee--ccCceeeeeecceecceechheeecCccc
Confidence 358999999999999999999999999976 78899999999999999999999997743
No 11
>KOG4226|consensus
Probab=99.23 E-value=1.2e-11 Score=96.58 Aligned_cols=58 Identities=36% Similarity=0.764 Sum_probs=53.0
Q ss_pred eEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCC
Q psy4227 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88 (157)
Q Consensus 29 ~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~ 88 (157)
.+.+.|.|.++.++||+|.+|..|.|+++ ..+|||+|..+|.+||||+|||.+..+..
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEK--ssDGWWrG~~ng~VGWFPSNYv~E~~ds~ 166 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEK--SSDGWWRGSYNGQVGWFPSNYVTEEVDSA 166 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEe--ccCcceecccCCeeccccccceehhcccc
Confidence 47888999999999999999999999987 78999999999999999999998876553
No 12
>KOG0162|consensus
Probab=99.20 E-value=1.1e-11 Score=107.20 Aligned_cols=55 Identities=44% Similarity=0.952 Sum_probs=50.9
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeec
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~ 84 (157)
+.|.|+|+|.+++.+||+|.+||+|.|+.. ...|||.|+.+|+.||||.+||..+
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~e--dpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMRE--DPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEecc--CCCcchhhccCCccccccccccccC
Confidence 589999999999999999999999999965 5789999999999999999999753
No 13
>KOG4348|consensus
Probab=99.20 E-value=2.7e-11 Score=99.74 Aligned_cols=61 Identities=56% Similarity=1.120 Sum_probs=56.1
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~ 87 (157)
+.+|+++|.|++++++||.|+.||+|.++.++..+-|||.|+++|+.|+||-|||+.+..+
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~~~ 321 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQVP 321 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcCCc
Confidence 4699999999999999999999999999988767889999999999999999999988644
No 14
>KOG2996|consensus
Probab=99.16 E-value=3.5e-11 Score=102.04 Aligned_cols=63 Identities=38% Similarity=0.749 Sum_probs=54.6
Q ss_pred CCCCcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecC
Q psy4227 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85 (157)
Q Consensus 23 ~p~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~ 85 (157)
.|..-..++|-|||-+..-.||+|..||+|.|+.+...+.|||+|..+|++||||++||++..
T Consensus 801 s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 801 SPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred CcceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 444556788899999999999999999999999875456899999999999999999998653
No 15
>KOG4348|consensus
Probab=99.15 E-value=8.9e-12 Score=102.49 Aligned_cols=61 Identities=52% Similarity=1.037 Sum_probs=56.0
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~ 89 (157)
.+.|.++|.|.++.++||.|..||+|.|+.. ...|||.|.++|..|+||+|||..+...++
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~e--VEeGWw~G~Lngk~GmFPsNFVkel~~~sd 160 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELISE--VEEGWWKGKLNGKVGMFPSNFVKELPTPSD 160 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhhH--hhhhhhhceecCcccccchhhceecCCCCc
Confidence 4689999999999999999999999999954 788999999999999999999999877665
No 16
>KOG1029|consensus
Probab=99.13 E-value=5.9e-11 Score=103.11 Aligned_cols=62 Identities=35% Similarity=0.889 Sum_probs=56.1
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCCC
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~ 89 (157)
-.|+|||.|++.+.+|++|..||+|.|.......+||.-|.+.|..||||++||+.|+..+.
T Consensus 694 vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~ 755 (1118)
T KOG1029|consen 694 VKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVET 755 (1118)
T ss_pred EEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCC
Confidence 36899999999999999999999999987666789999999999999999999999876553
No 17
>KOG1264|consensus
Probab=99.11 E-value=4.6e-11 Score=104.40 Aligned_cols=83 Identities=29% Similarity=0.573 Sum_probs=64.8
Q ss_pred hhhhhhhhcCCCc----ccCCCCcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCC-eEEEEcCCCee
Q psy4227 8 EKNLLKKFVRGRR----FRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG-RVGLFPDNFVT 82 (157)
Q Consensus 8 ~~~~~~~~~~~~~----~~~p~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g-~~G~fP~~yv~ 82 (157)
+.+++++..+... +.+.++...|+|||+|.+..++||+|.+|-+|.++.+ ...|||.|.++| ..+|||++||+
T Consensus 751 d~~a~~d~~r~pg~yme~n~~~~~vt~kAL~~Yka~r~DELSFpk~aiItnv~k--eeg~wWrGdYGg~iq~wfPsnyVe 828 (1267)
T KOG1264|consen 751 DINALYDVSRMPGDYMEINPSMPQVTVKALYDYKAKRSDELSFPKGAIITNVSK--EEGGWWRGDYGGRIQQWFPSNYVE 828 (1267)
T ss_pred ccccccccccCCCCccccCccccchhhhhhhccccCCcccccccccceeEeeec--cCCceeecccccceeeeccHHHhh
Confidence 3455555544333 3344566789999999999999999999999999987 467799999976 57999999999
Q ss_pred ecCCCCCCCC
Q psy4227 83 VLPTTDETSI 92 (157)
Q Consensus 83 ~~~~~~~~~~ 92 (157)
.|..+...++
T Consensus 829 ei~~~~~~~~ 838 (1267)
T KOG1264|consen 829 EISTADFEEL 838 (1267)
T ss_pred hhccccccch
Confidence 9977654433
No 18
>KOG4226|consensus
Probab=99.07 E-value=1.3e-10 Score=90.84 Aligned_cols=63 Identities=29% Similarity=0.664 Sum_probs=56.5
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecCCCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~~~~~ 89 (157)
...+.|||+|.+....||+|.+|+.+.|+++...+++||+++. .|.+|++|.|||..+.+...
T Consensus 191 l~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ 254 (379)
T KOG4226|consen 191 LHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPS 254 (379)
T ss_pred EEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCcc
Confidence 4578899999999999999999999999987666889999995 99999999999999876654
No 19
>KOG2856|consensus
Probab=99.07 E-value=2.8e-11 Score=97.63 Aligned_cols=56 Identities=41% Similarity=0.832 Sum_probs=50.1
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeC-CeEEEEcCCCeeec
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH-GRVGLFPDNFVTVL 84 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~-g~~G~fP~~yv~~~ 84 (157)
..++|||||.++..+||+|+.||.|..+.. ....||+.|++. |++|+||+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~e-eDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEE-EDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCC-ccccccccccccCCcccccchhhhhcc
Confidence 468999999999999999999999998874 356799999985 99999999999875
No 20
>KOG4225|consensus
Probab=98.98 E-value=3.3e-10 Score=93.18 Aligned_cols=53 Identities=43% Similarity=0.897 Sum_probs=49.6
Q ss_pred eEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEE--EeCCeEEEEcCCCeee
Q psy4227 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKG--ELHGRVGLFPDNFVTV 83 (157)
Q Consensus 29 ~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g--~~~g~~G~fP~~yv~~ 83 (157)
.++|||.|.++.++||.|..||+|.|+++ +++||+.| +..|..|.||-|||+.
T Consensus 434 ~yrAly~Y~pqnedeLEl~egDii~VmeK--cddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 434 KYRALYSYRPQNEDELELREGDIIDVMEK--CDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccccCCCCchhheeccCCEEeeeec--ccCcceeccceecccccccCcccccc
Confidence 47999999999999999999999999987 89999999 5799999999999975
No 21
>KOG4792|consensus
Probab=98.81 E-value=3.2e-09 Score=81.09 Aligned_cols=59 Identities=22% Similarity=0.665 Sum_probs=52.2
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecCCCC
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPTTD 88 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~~~~ 88 (157)
.+++++|||.+...+.|.|++|+++.|+.+ .+..||..+. .|+.|++|.+||+.+....
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K--~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDK--PEEQWWNARNSEGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecC--cHHHhhhhhccCCcccceechHHHhhhhhh
Confidence 467889999999999999999999999976 6778999995 8999999999999865443
No 22
>KOG2546|consensus
Probab=98.79 E-value=2.9e-09 Score=87.49 Aligned_cols=56 Identities=36% Similarity=0.796 Sum_probs=52.0
Q ss_pred eEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCC
Q psy4227 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86 (157)
Q Consensus 29 ~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~ 86 (157)
.++++|||.+...+||+|..|-+|.|+.+ .++|||+|...|..||||.|||+.+-.
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kk--nddgw~EgV~~~VTglFpgnyve~~~~ 480 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKK--NDDGWYEGVQDGVTGLFPGNYVEPLKA 480 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEe--cCCcchhheecCcceeccCcccccccc
Confidence 57889999999999999999999999988 689999999999999999999998743
No 23
>KOG0515|consensus
Probab=98.79 E-value=2.3e-09 Score=90.39 Aligned_cols=62 Identities=37% Similarity=0.691 Sum_probs=54.2
Q ss_pred CCcceEEEecCCCCCCCCCCccCCCCEEEEEEe-cCCCCCeEEEEeCCeEEEEcCCCeeecCC
Q psy4227 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISR-DAPDKGWWKGELHGRVGLFPDNFVTVLPT 86 (157)
Q Consensus 25 ~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~-~~~~~gWw~g~~~g~~G~fP~~yv~~~~~ 86 (157)
+....+.|+|||+++..+||+|..||.+.||.+ +..+..||.++++|+.|+||.+|+-.+..
T Consensus 681 mN~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr 743 (752)
T KOG0515|consen 681 MNKGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR 743 (752)
T ss_pred cccceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence 345578999999999999999999999999987 34466899999999999999999977643
No 24
>KOG3655|consensus
Probab=98.72 E-value=3.5e-09 Score=88.03 Aligned_cols=57 Identities=37% Similarity=0.883 Sum_probs=51.8
Q ss_pred CcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeec
Q psy4227 26 LKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVL 84 (157)
Q Consensus 26 ~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~ 84 (157)
..++++|+|||.+..+.|++|..++.|.+|.. .+.|||.|.. .|..|+||+|||+.+
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~--vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITLIDQ--VDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred cCCCccccccccccCCcccccCCccccccccc--cCCccccccCCCCCcCcccccccccC
Confidence 45689999999999999999999999999954 7899999996 899999999999876
No 25
>KOG3601|consensus
Probab=98.66 E-value=1.7e-08 Score=76.27 Aligned_cols=63 Identities=21% Similarity=0.488 Sum_probs=55.0
Q ss_pred cccCCCCcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeec
Q psy4227 20 RFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84 (157)
Q Consensus 20 ~~~~p~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~ 84 (157)
.++++....++.++|||.++.+.+|.|+.|+++.|+.. .+..||.|+..|+.|+||++||..+
T Consensus 156 ~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~--ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 156 PLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDS--SSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred cCCCCccchhhhhcCCCCCCCchhhccccCCcceeecC--CCcchhhccccCceeeecCcccccc
Confidence 34444555688999999999999999999999999965 6889999999999999999998764
No 26
>KOG1843|consensus
Probab=98.51 E-value=6.5e-08 Score=79.33 Aligned_cols=57 Identities=25% Similarity=0.739 Sum_probs=51.4
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeee
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~ 83 (157)
+..+.++|+|.++....|.|++||+|.++.+......||.|+.++..|+||.+||..
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 347899999999999999999999999998755567899999999999999999974
No 27
>KOG3875|consensus
Probab=98.51 E-value=1.7e-08 Score=80.21 Aligned_cols=61 Identities=30% Similarity=0.496 Sum_probs=51.1
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecC---CCCCeEEEE-e-CCeEEEEcCCCeeecCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDA---PDKGWWKGE-L-HGRVGLFPDNFVTVLPTT 87 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~---~~~gWw~g~-~-~g~~G~fP~~yv~~~~~~ 87 (157)
+..|+|+|||.+.++.||+|++||.+.|+.+++ .++.||..+ . .+..||||.+||+++...
T Consensus 268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq 333 (362)
T KOG3875|consen 268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQ 333 (362)
T ss_pred HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcC
Confidence 467999999999999999999999999987632 234588887 4 678999999999998763
No 28
>KOG1702|consensus
Probab=98.47 E-value=1.6e-07 Score=70.86 Aligned_cols=57 Identities=30% Similarity=0.697 Sum_probs=49.8
Q ss_pred CcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe--CCeEEEEcCCCeeec
Q psy4227 26 LKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVL 84 (157)
Q Consensus 26 ~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~ 84 (157)
.+..++|+|||.++..+|++|.-||.|..++. .++||..|.+ +|..|..|+||++.+
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~--iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQS--IDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEe--ccCCceeeEEEeccccCCCchhheeeC
Confidence 34578999999999999999999999988865 7899988874 899999999999853
No 29
>KOG3523|consensus
Probab=98.23 E-value=1.1e-07 Score=81.31 Aligned_cols=60 Identities=30% Similarity=0.645 Sum_probs=53.0
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe--CCeEEEEcCCCeeecCCCCC
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~~~~ 89 (157)
+.+.+...|.+..++||+|..+|++.|+.+ ..+||+.|.. .|..||||..|++.|.....
T Consensus 609 pQv~~~~sy~a~q~Del~Le~~Dvv~v~~k--~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~~ 670 (695)
T KOG3523|consen 609 PQVQCVHSYKAKQPDELTLELADVVNVLQK--TPDGWLEGERLRDGERGWFPSSYVEEITNPHT 670 (695)
T ss_pred ChhheeeccccCCCceeeeehhhhhhhhhc--CCCccccccccccCccCcchHHHHHHhcCHHH
Confidence 357788999999999999999999999976 7889999983 89999999999999876543
No 30
>KOG4278|consensus
Probab=98.17 E-value=2e-06 Score=74.90 Aligned_cols=59 Identities=15% Similarity=0.424 Sum_probs=49.3
Q ss_pred eEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCC
Q psy4227 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88 (157)
Q Consensus 29 ~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~ 88 (157)
..+|||||.+.++..|++.+|+.+.|+.-. .+..|++.+.....||||+||+.++...+
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN-~NgEWcEartKNGqGWVPSNyItPvNSLe 150 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYN-KNGEWCEARTKNGQGWVPSNYITPVNSLE 150 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeec-CCCcceeecccCCCccccccccccccchh
Confidence 789999999999999999999999999763 35579999863334999999999875443
No 31
>KOG3557|consensus
Probab=98.07 E-value=2e-06 Score=74.22 Aligned_cols=64 Identities=30% Similarity=0.618 Sum_probs=55.2
Q ss_pred CCcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecCCCCCCC
Q psy4227 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPTTDETS 91 (157)
Q Consensus 25 ~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~~~~~~~ 91 (157)
..+.++.++|||.+.+..||++.+||++.|+.. ..+||.++. .|+.|++|++.+..+.......
T Consensus 498 ~~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d---~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~~ 562 (721)
T KOG3557|consen 498 QGKKWVLVLYDFQARNSSELSVKKGEVLEVLDD---GRKWWKVKNGHGRAGYVPSNILAPLQPEHTGE 562 (721)
T ss_pred ccceeeeeehhhhcccchhhhhhhhhhhhhhhc---cccceeccCccCCCCCcchhhhccCCCccccc
Confidence 345589999999999999999999999999953 568999996 8999999999999987765544
No 32
>KOG2528|consensus
Probab=98.06 E-value=2.3e-06 Score=71.00 Aligned_cols=61 Identities=26% Similarity=0.615 Sum_probs=52.9
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecCCCCC
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~~~~~ 89 (157)
..++++|||......|+++..|+++.+...+ ...|||.|.. .|..|+||+.||+++.....
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~-~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~ 64 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSED-VIEGWLEGSNSRGERGLFPASYVEVTRLAVA 64 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCcc-cccccccCCCccCccCCCcccceeeeccccc
Confidence 3578999999999999999999999998754 5679999995 99999999999999874443
No 33
>KOG4773|consensus
Probab=98.05 E-value=5e-07 Score=72.85 Aligned_cols=64 Identities=30% Similarity=0.559 Sum_probs=56.2
Q ss_pred CCCcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCCC
Q psy4227 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 24 p~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~ 89 (157)
++..+.+.+++||.+....||.|..|+++.++.+ .+.+||.|...|.+||||.+|+..+...++
T Consensus 172 ~~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r--~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 172 GMAAQRAEASFDFPGNSKLELNLVAGDVEFLLSR--DEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred hhhhHHHHhhccCCCCccceeeeehhhHHHHHhh--cccceeeeeeccccccccHHhhhhhccCcc
Confidence 3444677889999999999999999999999976 588999999999999999999999865555
No 34
>KOG3632|consensus
Probab=98.03 E-value=5e-06 Score=74.66 Aligned_cols=62 Identities=31% Similarity=0.598 Sum_probs=51.9
Q ss_pred CcceEEEecCCCCC--------CCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCC
Q psy4227 26 LKERCKVLYPYEAQ--------NEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88 (157)
Q Consensus 26 ~~~~~~al~df~~~--------~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~ 88 (157)
+....+|+|||++. ...||.|+.|++|.|+.. ...+|++.|+++|+.|+||+|+|.++.-..
T Consensus 1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GD-kDadgFY~GE~ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGD-KDADGFYMGELNGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred cceeeEeeeccCccccCCCCChhhhccccccCcEEEEecc-ccccceeecccccccccccccccccccCCc
Confidence 34578999999853 466899999999999974 356799999999999999999999886554
No 35
>KOG2222|consensus
Probab=97.91 E-value=1.4e-06 Score=73.37 Aligned_cols=58 Identities=38% Similarity=0.749 Sum_probs=51.5
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCC
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~ 87 (157)
..++|+.||....++||.|++.|+|.|+.. .+.-.|.|+++|-+||||+-||+.+..-
T Consensus 549 krakal~df~r~dddelgfrkndiitiise--kdehcwvgelnglrgwfpakfvellder 606 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISE--KDEHCWVGELNGLRGWFPAKFVELLDER 606 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeec--CCcceeeeccccccccchHHHHHHHHhc
Confidence 357899999999999999999999999965 5778999999999999999999986543
No 36
>KOG4575|consensus
Probab=97.76 E-value=3.1e-05 Score=66.96 Aligned_cols=60 Identities=27% Similarity=0.453 Sum_probs=48.7
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEE-e--CCeEEEEcCCCeeecCCCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-L--HGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~-~--~g~~G~fP~~yv~~~~~~~~ 89 (157)
+..++|+|.+.++.+..|.|-.||+|.++.- .+|||.+. + ....|+||+|||..++....
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI---~dgkwwi~lhrNk~~~g~fpsNFvhcLd~r~~ 70 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRI---EDGKWWILLHRNKDEDGLFPSNFVHCLDKRVR 70 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEee---ccceeeeeeeecccccccCcccceeecccccc
Confidence 4478999999999999999999999999854 45666665 3 56789999999988765543
No 37
>KOG3771|consensus
Probab=97.52 E-value=5.9e-05 Score=63.20 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=45.8
Q ss_pred CcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCee
Q psy4227 26 LKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82 (157)
Q Consensus 26 ~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~ 82 (157)
+...+.++|+|.+...++|+|..|++|.|+.- .....||.|++.|..+-++.+|+.
T Consensus 399 ~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s-~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 399 FLYKVKALHDYAAQDTDELSFEAGDVILVIPS-DNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred CccceeccccccccccccccccCCCEEEEecC-CCccchhhHHHhhhccccccccee
Confidence 34578999999999999999999999999974 356689999987777666666654
No 38
>KOG1451|consensus
Probab=97.48 E-value=0.00013 Score=62.84 Aligned_cols=56 Identities=34% Similarity=0.690 Sum_probs=47.4
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeec
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~ 84 (157)
..+.++|.-.+....+++|..|.++.-+.. ...+||..|+++|..|++|+|||+.+
T Consensus 757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~-S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 757 RRVKTLYACTADHHSELSFEPGTIFTNVYE-SNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred ccccceeccCCCCcccccccCcceeeeecc-cCCCCceeeecCCCcccCcccccCcC
Confidence 456778888888899999999999876652 25789999999999999999999864
No 39
>KOG4429|consensus
Probab=97.42 E-value=5.7e-05 Score=60.11 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=48.7
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeec
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~ 84 (157)
..|.++|.|.+...+||....|+++.+-++ ...|||.|++.|..|-||+.||+.+
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ek--keeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEK--KEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCc--ccCCCceeeeccccCCCcHHHHHHh
Confidence 367899999999999999999999877654 6789999999999999999998865
No 40
>KOG3775|consensus
Probab=97.36 E-value=0.00012 Score=60.07 Aligned_cols=61 Identities=23% Similarity=0.504 Sum_probs=51.9
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe--CCeEEEEcCCCeeecCCCCCC
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVLPTTDET 90 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~~~~~ 90 (157)
+.-++++-|.+..++||.|..||.|.|-.. .++-|+.|.. +|+.|+||+.|+..+......
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~e--adD~W~~G~NlRTG~~GIFPA~ya~evd~~eed 325 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAE--ADDFWFEGFNLRTGERGIFPAFYAHEVDGPEED 325 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeec--ccchhhccccccccccccccceeEEecCCchhh
Confidence 355789999999999999999999988643 5778999984 899999999999998776654
No 41
>KOG4792|consensus
Probab=97.29 E-value=0.00052 Score=52.92 Aligned_cols=58 Identities=28% Similarity=0.488 Sum_probs=48.1
Q ss_pred ceEEEecCCCC--CCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCC
Q psy4227 28 ERCKVLYPYEA--QNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87 (157)
Q Consensus 28 ~~~~al~df~~--~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~ 87 (157)
.+++++++-.+ -....|.+.+||+|.|..+ ...|-|+|+++|+.|.||..||......
T Consensus 228 a~Arv~q~RVPnAYDkTaL~levGdiVkVTk~--ninGqwegElnGk~G~fPfThvrf~d~~ 287 (293)
T KOG4792|consen 228 AYARVIQKRVPNAYDKTALALEVGDIVKVTKK--NINGQWEGELNGKIGHFPFTHVRFTDVQ 287 (293)
T ss_pred hheeeehhcCCCccChhhhhhhcCcEEEEEee--ccCceeeeeecCccccccceeEEeeccC
Confidence 36778877654 3566799999999999976 5789999999999999999999987544
No 42
>KOG3725|consensus
Probab=97.28 E-value=5.5e-05 Score=59.27 Aligned_cols=57 Identities=30% Similarity=0.588 Sum_probs=49.8
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeec
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~ 84 (157)
..++++|||++....||++-.+++|.|+.-..-+.+|..|+.+++.|-+|..|++.+
T Consensus 318 rkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 318 RKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred cceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 468999999999999999999999999865333668999999999999999998764
No 43
>KOG0609|consensus
Probab=97.18 E-value=0.00015 Score=61.71 Aligned_cols=55 Identities=25% Similarity=0.615 Sum_probs=44.1
Q ss_pred cceEEEecCCCCCCCC-------CCccCCCCEEEEEEecCCCCCeEEEEeC-----CeEEEEcCCCeee
Q psy4227 27 KERCKVLYPYEAQNED-------ELTLKEEDIVVLISRDAPDKGWWKGELH-----GRVGLFPDNFVTV 83 (157)
Q Consensus 27 ~~~~~al~df~~~~~~-------eLs~~~Gd~i~vl~~~~~~~gWw~g~~~-----g~~G~fP~~yv~~ 83 (157)
..+++|+|||++..++ .|.|++||++.|+.+ .+..||.++.. +..|++|+...+.
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~q--dD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQ--DDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccC--CCcchhhhhcccCccccccccccCHHHHH
Confidence 3688999999987654 499999999999976 68899999853 4568888866654
No 44
>KOG0197|consensus
Probab=96.97 E-value=0.00032 Score=59.42 Aligned_cols=56 Identities=23% Similarity=0.674 Sum_probs=47.9
Q ss_pred cceEEEecCCCCCCCCCCccCCCCE-EEEEEecCCCCCeEEEEe--CCeEEEEcCCCeeec
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDI-VVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVL 84 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~-i~vl~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~ 84 (157)
...++|+|+|.+....+|+|..|+. ..++.. .+..||..+. .+..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~--~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLET--TNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeecc--CChhHHHHHHhhcCCCCcCcCceeecc
Confidence 4578999999999999999999999 566633 5678999883 789999999999875
No 45
>KOG3632|consensus
Probab=96.89 E-value=0.0035 Score=57.08 Aligned_cols=62 Identities=35% Similarity=0.649 Sum_probs=51.4
Q ss_pred cceEEEecCCCC------CCCCCCccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecCCCCC
Q psy4227 27 KERCKVLYPYEA------QNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 27 ~~~~~al~df~~------~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~~~~~ 89 (157)
.+.+.+.|.|++ .-+.||.+..|+.|+|.. +...+|++.|.+ .|+.|++|+|||+.+.+..+
T Consensus 447 ~q~~~arySynPFegpNenpeaelpltAg~yiYiyG-dmdEdgfyegeL~dgrrglvPsnFVe~v~d~~~ 515 (1335)
T KOG3632|consen 447 AQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYG-DMDEDGFYEGELRDGRRGLVPSNFVEVVTDTKE 515 (1335)
T ss_pred cceEEEEEeccCCcCCCCCCccccccccceEEEEec-CCCccccceeeeecccccCCCchheEEeccchh
Confidence 356788999886 234579999999999987 446789999996 99999999999999977764
No 46
>KOG3601|consensus
Probab=96.78 E-value=0.00016 Score=54.96 Aligned_cols=53 Identities=26% Similarity=0.500 Sum_probs=45.5
Q ss_pred EEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeee
Q psy4227 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83 (157)
Q Consensus 30 ~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~ 83 (157)
+.++++|.+...+||+|.+|+.|.++... .+-.|......|..|++|.||...
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~-d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNME-DDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchH-HhhhhhhHhhcCccccCccccccc
Confidence 56789999999999999999999998652 344699999999999999999854
No 47
>KOG3565|consensus
Probab=96.28 E-value=0.001 Score=58.72 Aligned_cols=60 Identities=27% Similarity=0.585 Sum_probs=51.9
Q ss_pred CCcceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEE--eCCeEEEEcCCCeeecC
Q psy4227 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLP 85 (157)
Q Consensus 25 ~~~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~--~~g~~G~fP~~yv~~~~ 85 (157)
.+.+.+.++|.|.++++.++++..|+++.++..+ ..+||=+++ ..+..|+||.+|+....
T Consensus 576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~-~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEED-KGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CCccceecccCcCCCCCCccccCcchhHHHHhhc-ccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 3456789999999999999999999999998754 577999998 68899999999998654
No 48
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=95.28 E-value=0.035 Score=36.57 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCCCCccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecC
Q psy4227 40 NEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLP 85 (157)
Q Consensus 40 ~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~ 85 (157)
+.-.|.+.+|+++.|++. .+.+-|.|+. .|+.|++|.+++-...
T Consensus 29 G~kDLpi~~GE~LeVI~~--t~~~kvlCRN~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQF--TDDNKVLCRNSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp -TTB----TT-B-EEEEE--SSSSEEEEEETTTEEEEEEGGGS----
T ss_pred CcccCCcCCCCEEEEEEe--CCCCeEEEeCCCCceeEEEHHHccCCC
Confidence 456799999999999976 6778899996 9999999999986543
No 49
>KOG0199|consensus
Probab=95.00 E-value=0.026 Score=50.54 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=40.8
Q ss_pred EEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe--CCeEEEEcCCCeee
Q psy4227 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTV 83 (157)
Q Consensus 31 ~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~fP~~yv~~ 83 (157)
+|.-+|....++.|-|.+||.|.|++.. ....||+|.. +++.|.||.+-|..
T Consensus 378 ~a~~~~d~~ep~aLh~~kgD~IvVIegs-~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 378 VARETYDSIEPGALHLTKGDEIVVIEGS-GAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred eeeeeccccCCCceeeccCCeEEEEecC-CccceeeccccccceecccCcceeee
Confidence 3444555678889999999999999742 3457999973 88999999988873
No 50
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=94.62 E-value=0.089 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.606 Sum_probs=28.0
Q ss_pred ccCCCCEEEEEEecCCCCC-eEEEE-eCCeEEEEcCCCee
Q psy4227 45 TLKEEDIVVLISRDAPDKG-WWKGE-LHGRVGLFPDNFVT 82 (157)
Q Consensus 45 s~~~Gd~i~vl~~~~~~~g-Ww~g~-~~g~~G~fP~~yv~ 82 (157)
.+..|+.|.|+... ..+ |+..+ ..|..||+...|+.
T Consensus 18 ~l~~g~~v~v~~~~--~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGES--GDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEE--TT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEc--CCcEEEEEECcCCcEEEEEccccC
Confidence 46789999999763 322 99995 69999999999874
No 51
>KOG3812|consensus
Probab=93.83 E-value=0.025 Score=46.23 Aligned_cols=47 Identities=17% Similarity=0.626 Sum_probs=36.2
Q ss_pred EEEecCCCCCCCCC-------CccCCCCEEEEEEecCCCCCeEEEEe---CCeEEEEcC
Q psy4227 30 CKVLYPYEAQNEDE-------LTLKEEDIVVLISRDAPDKGWWKGEL---HGRVGLFPD 78 (157)
Q Consensus 30 ~~al~df~~~~~~e-------Ls~~~Gd~i~vl~~~~~~~gWw~g~~---~g~~G~fP~ 78 (157)
+++..+|.+.-+++ ++|...|.|.|-++ -+.+||-|++ ++..||+|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeK--ynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEK--YNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhh--cccchhHHHHhhcCCccccccc
Confidence 44567787765544 78888999988765 6889999994 667899997
No 52
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=93.29 E-value=0.21 Score=30.15 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=27.8
Q ss_pred CccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCe
Q psy4227 44 LTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFV 81 (157)
Q Consensus 44 Ls~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv 81 (157)
-.+..|+.+.++.. ...+|+..+. .|..||++..++
T Consensus 25 ~~l~~g~~v~i~~~--~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 25 GTLKKGDKVKVLGV--DGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EEecCCCEEEEEEc--cCCceEEEEcCCCCEEEEEeeee
Confidence 34778999999864 3338999997 499999977655
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.01 E-value=0.16 Score=38.95 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=32.3
Q ss_pred CccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecC
Q psy4227 44 LTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLP 85 (157)
Q Consensus 44 Ls~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~ 85 (157)
-.+..|+.|.|+... .+.+|...+. .|+.||++..|+...+
T Consensus 48 ~~l~~G~~v~vl~~~-~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 48 GTLNAGEEVTLLQVN-ANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEEcCCCEEEEEEEc-CCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 457789999999752 2358999985 8999999999987543
No 54
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=92.25 E-value=0.41 Score=28.33 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=28.4
Q ss_pred CccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCe
Q psy4227 44 LTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81 (157)
Q Consensus 44 Ls~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv 81 (157)
..+..|..+.|+. ...+|...+..|..||++...+
T Consensus 19 ~~l~~g~~v~v~~---~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE---CRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE---ccCCeEEEEECCeEEeEEeeec
Confidence 4567888888884 3678999999999999987664
No 55
>KOG2996|consensus
Probab=91.16 E-value=0.16 Score=44.42 Aligned_cols=47 Identities=30% Similarity=0.644 Sum_probs=36.2
Q ss_pred CCCCccCCCCEEEEEEecCCCCCeEEEEe--CCeEEEEcCCCeeecCCCC
Q psy4227 41 EDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVLPTTD 88 (157)
Q Consensus 41 ~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~fP~~yv~~~~~~~ 88 (157)
..-|.++.|+++.++.-+ ....||.|+. .+..||||++-|.+++..+
T Consensus 624 gP~l~~~~gdvlel~~~d-~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 624 GPRLVLQEGDVLELLKGD-AESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred CCceEecCCceeehhcCC-CCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 345889999999887532 4567999995 5678999999998765544
No 56
>KOG0040|consensus
Probab=90.55 E-value=0.0031 Score=59.64 Aligned_cols=59 Identities=34% Similarity=0.689 Sum_probs=51.5
Q ss_pred cceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCC
Q psy4227 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87 (157)
Q Consensus 27 ~~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~ 87 (157)
..++.++|+|...++-+.+.++||++.++.. ....||.+++..+.|++|..||..+.+.
T Consensus 968 ~~~v~alyd~q~kSprev~mKkgDvltll~s--~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 968 KECVLALYDYQEKSPREVTMKKGDVLTLLNS--INKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHHhcCHHHHHHhhhhHHHHHhh--cccccccchhhhhcCcchHHHHHHhccC
Confidence 3467899999999999999999999887743 5778999999999999999999988655
No 57
>KOG3705|consensus
Probab=87.99 E-value=0.52 Score=39.67 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=41.5
Q ss_pred ceEEEecCCCCCCCCCCccCCCCEEEEEEecCCCCCeEEEEe--CCeEEEEcCCCeee
Q psy4227 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTV 83 (157)
Q Consensus 28 ~~~~al~df~~~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~--~g~~G~fP~~yv~~ 83 (157)
...+++++..+...+|+.++.||.|.|..- .=+|.-+|.. .++.|+||+.-|.+
T Consensus 510 Hn~ivi~aH~prt~~ei~l~vGD~vgvAGN--HWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 510 HNVIVIEAHIPRTNKEIDLKVGDKVGVAGN--HWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred cceEEEEecCCCcccccCcccCCeeeeccc--ccccccccccccccccCCCccceeee
Confidence 357889999999999999999999988632 2234555553 67899999876654
No 58
>KOG4384|consensus
Probab=81.72 E-value=0.86 Score=37.46 Aligned_cols=59 Identities=31% Similarity=0.585 Sum_probs=47.9
Q ss_pred eEEEecCCCC--CCCCCCccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcCCCeeecCCCCC
Q psy4227 29 RCKVLYPYEA--QNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 29 ~~~al~df~~--~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~ 89 (157)
.+++.-+|.+ ...++|.+..|++|.++.+ ...|-|.|-+.++.|.|+..||..+.....
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~--~~~~~~~g~~~~kv~~f~~~~v~~~s~e~~ 198 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEK--PPMGTWLGLLNNKVGSFKFIYVDVISEEEP 198 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhcccc--CccccccccccCcccccccceecccccccc
Confidence 3455556654 5678899999999999976 678899999999999999999998866554
No 59
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=80.72 E-value=2.8 Score=36.13 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=31.6
Q ss_pred CccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeee
Q psy4227 44 LTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTV 83 (157)
Q Consensus 44 Ls~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~ 83 (157)
-++..|+.|.|+.. ...||+..+. .|+.||+-..|+..
T Consensus 103 gsl~~G~~V~Vl~~--~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETT--ESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeec--ccCCeEEEEcCCCCEEEEecccccC
Confidence 56789999999842 3678999998 59999999999875
No 60
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=78.78 E-value=4.2 Score=31.15 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=32.4
Q ss_pred CccCCCCEEEEEEecCCCCCeEEEEe-CCeEEEEcCCCeeecC
Q psy4227 44 LTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLP 85 (157)
Q Consensus 44 Ls~~~Gd~i~vl~~~~~~~gWw~g~~-~g~~G~fP~~yv~~~~ 85 (157)
=+++.|+.+.|+..+ ...||...+. .|+.|||+..++..-+
T Consensus 48 ~~i~~Ge~vtvl~~~-~~~~~~qI~~~~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 48 GSIKAGEKVTVLGTD-GNTGYYQIRDSSGRTGWILSKNLTSEP 89 (205)
T ss_pred eEecCCcEEEEEEEc-CcccEEEEEecCCceEEEechhhcccc
Confidence 467899999999753 3457999996 8999999998876543
No 61
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=76.01 E-value=8.6 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=22.7
Q ss_pred ccCCCCEEEEEEecCCCCCeEEEEeCCeEEEEcC
Q psy4227 45 TLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPD 78 (157)
Q Consensus 45 s~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~fP~ 78 (157)
.+..|+-|.|++.. .+..|..+....-.||+++
T Consensus 22 ~l~~gtPv~i~H~S-~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 22 ALHPGTPVYILHTS-RDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EE-TT-EEEEEEE--TTSSEEEEE-SS-EEEEEG
T ss_pred ccCCCCCEEEEEEC-CCCCEEEEecCCeeEeeeC
Confidence 46778999999863 5667999998889999874
No 62
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=75.46 E-value=5.5 Score=23.80 Aligned_cols=23 Identities=26% Similarity=0.728 Sum_probs=18.8
Q ss_pred ccCCCCEEEEEEecCCCCCeEEEEe
Q psy4227 45 TLKEEDIVVLISRDAPDKGWWKGEL 69 (157)
Q Consensus 45 s~~~Gd~i~vl~~~~~~~gWw~g~~ 69 (157)
.|..|+.|.+... .+++||.|..
T Consensus 2 ~~~~G~~Ve~~~~--~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSK--EEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEEC--CCCEEEEEEE
Confidence 4789999999864 3778999984
No 63
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=71.67 E-value=6 Score=25.35 Aligned_cols=27 Identities=33% Similarity=0.767 Sum_probs=18.8
Q ss_pred CCccCCCCEEEEEEec----CCCCCeEEEEe
Q psy4227 43 ELTLKEEDIVVLISRD----APDKGWWKGEL 69 (157)
Q Consensus 43 eLs~~~Gd~i~vl~~~----~~~~gWw~g~~ 69 (157)
-|.++.||.+.|-... ..+..||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 3778999998765421 23468999983
No 64
>KOG2422|consensus
Probab=60.36 E-value=4.9 Score=35.46 Aligned_cols=27 Identities=48% Similarity=0.599 Sum_probs=12.4
Q ss_pred cCCCccccccchhHHHHHHHHHhhhhc
Q psy4227 130 KKEGESLDLTNKKKKKKKKKKKKKKKK 156 (157)
Q Consensus 130 ~~~~~~~~l~~k~~~~~~~~~~~~~~~ 156 (157)
++.+-...+.+|.-|+|+|||+++++|
T Consensus 75 ~~~es~~~~~~~~sk~k~KKK~krkkK 101 (665)
T KOG2422|consen 75 VGQESRITLASKSSKNKKKKKKKRKKK 101 (665)
T ss_pred cCCcccccccchhhccccchhhhhccc
Confidence 444444455555544444444444433
No 65
>KOG1314|consensus
Probab=58.23 E-value=25 Score=29.31 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCCCccCCCCEEEEEEecCCCCCeEEEE-------eCC----eEEEEcCCC-eeecCCCCC
Q psy4227 40 NEDELTLKEEDIVVLISRDAPDKGWWKGE-------LHG----RVGLFPDNF-VTVLPTTDE 89 (157)
Q Consensus 40 ~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~-------~~g----~~G~fP~~y-v~~~~~~~~ 89 (157)
++.-|+|.+||.|.+.. .-..|..|. ..+ ..||||.++ ++..+...+
T Consensus 330 ddprisL~p~d~i~~tr---~~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e~~~~ 388 (414)
T KOG1314|consen 330 DDPRISLPPGDGIKATR---GFNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKCEKDYE 388 (414)
T ss_pred CCcccccCCCcceeeee---eeecccchhhhhhHHHhhcchhhhccccccccccccccccCC
Confidence 45559999999998763 356888883 111 469999998 665554443
No 66
>KOG3580|consensus
Probab=53.32 E-value=26 Score=31.46 Aligned_cols=50 Identities=12% Similarity=0.349 Sum_probs=35.6
Q ss_pred eEEEecCCCCCCCCCCccCCCCEEEEEEec-CCCCC-eEEEEeCC-----eEEEEcC
Q psy4227 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRD-APDKG-WWKGELHG-----RVGLFPD 78 (157)
Q Consensus 29 ~~~al~df~~~~~~eLs~~~Gd~i~vl~~~-~~~~g-Ww~g~~~g-----~~G~fP~ 78 (157)
+.+..|.++...+..|.|.+|+++.|+.-- ....| |+-.+.+. ..|++|-
T Consensus 506 yIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPN 562 (1027)
T KOG3580|consen 506 YIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPN 562 (1027)
T ss_pred EEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCC
Confidence 567788899999999999999999988530 12233 55555432 4688885
No 67
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=38.58 E-value=51 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=12.5
Q ss_pred cCCCCEEEEEEecCC-CCCeEEEEe
Q psy4227 46 LKEEDIVVLISRDAP-DKGWWKGEL 69 (157)
Q Consensus 46 ~~~Gd~i~vl~~~~~-~~gWw~g~~ 69 (157)
|++|+.|.|...+.. ...|+.+..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 678999999875322 223777763
No 68
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=34.12 E-value=2 Score=32.18 Aligned_cols=37 Identities=32% Similarity=0.613 Sum_probs=24.6
Q ss_pred CCCCccCCCCEEEEEEecCCCCCeEEEE-eCCeEEEEcC
Q psy4227 41 EDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPD 78 (157)
Q Consensus 41 ~~eLs~~~Gd~i~vl~~~~~~~gWw~g~-~~g~~G~fP~ 78 (157)
.+...-.-|.++.++.. +...||..|- +.|+.|+|++
T Consensus 52 ~~~~~~~~G~V~e~LSE-h~c~G~leGY~LtGrhglf~s 89 (179)
T PF03894_consen 52 DDEHLAPGGRVMEVLSE-HQCQGWLEGYLLTGRHGLFAS 89 (179)
T ss_dssp T-TTEESS-SEEE-S-H-HHHHHHHHHHHHTT-EEEEEE
T ss_pred chhhcccCCeeeeecCH-HHHHHHHHHHHhcCCcccccc
Confidence 44556667999999874 3567999987 5999999985
No 69
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=31.97 E-value=15 Score=26.82 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=0.0
Q ss_pred CCCeEEEE
Q psy4227 61 DKGWWKGE 68 (157)
Q Consensus 61 ~~gWw~g~ 68 (157)
++.++.+.
T Consensus 20 NP~YLK~~ 27 (154)
T PF06375_consen 20 NPHYLKGS 27 (154)
T ss_dssp --------
T ss_pred CCceecCC
Confidence 34445554
No 70
>KOG2422|consensus
Probab=30.42 E-value=16 Score=32.43 Aligned_cols=6 Identities=83% Similarity=1.038 Sum_probs=2.2
Q ss_pred HHHHhh
Q psy4227 148 KKKKKK 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
|||++|
T Consensus 96 ~krkkK 101 (665)
T KOG2422|consen 96 KKRKKK 101 (665)
T ss_pred hhhccc
Confidence 333333
No 71
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=29.20 E-value=70 Score=28.29 Aligned_cols=41 Identities=20% Similarity=0.490 Sum_probs=30.1
Q ss_pred CCEEEEEEec---CCCCCeEEEEe-CCeEEEEcCCCeeecCCCCC
Q psy4227 49 EDIVVLISRD---APDKGWWKGEL-HGRVGLFPDNFVTVLPTTDE 89 (157)
Q Consensus 49 Gd~i~vl~~~---~~~~gWw~g~~-~g~~G~fP~~yv~~~~~~~~ 89 (157)
|+++.|.... ..+-+|....+ +|..||+-..||+++.....
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (549)
T PRK13545 375 GDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKSNNN 419 (549)
T ss_pred CceEEEcccccccccCcceEEEEecCCccceeeeeeeeecccCCc
Confidence 6777776531 12447998885 99999999999998765543
Done!