RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4227
(157 letters)
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 106 bits (266), Expect = 3e-31
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ CKV++PYEAQN+DELT+KE DIV LI++D D GWW+GEL+GR G+FPDNFV +LP
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 61
Query: 87 TDE 89
+
Sbjct: 62 LEH 64
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 105 bits (264), Expect = 1e-30
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ LYP+EA+N DE++ DI+ + + + GW G G G FP N+V +P+
Sbjct: 5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS 64
Query: 87 TDETSIKSEKPSPAKSTTN 105
++ S K + T +
Sbjct: 65 SENEKAVSPKKALLPPTVS 83
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 104 bits (261), Expect = 2e-30
Identities = 38/62 (61%), Positives = 49/62 (79%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ CKV++PYEAQN+DELT+KE DIV LI++D D GWW+GEL+GR G+FPDNFV +L
Sbjct: 7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSG 66
Query: 87 TD 88
Sbjct: 67 PS 68
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 101 bits (255), Expect = 1e-29
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
KE C+ L+PY NEDELT +E +I+ LIS++ + GWWKGEL+G+ G+FPDNF +
Sbjct: 6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI 63
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 101 bits (253), Expect = 3e-29
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
K+ CKV++PYEAQN+DELT+KE DIV LI++D D GWW+GEL+GR G+FPDNFV +LP
Sbjct: 9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP 68
Query: 87 TDE 89
E
Sbjct: 69 DFE 71
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 100 bits (251), Expect = 5e-29
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
Y + A++ EL+L+E D+V + SR D+GWWKGE +GR+G FP +V
Sbjct: 8 GTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQ 67
Query: 88 DETS 91
S
Sbjct: 68 SGPS 71
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 99.2 bits (248), Expect = 1e-28
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
+ ++ + ++AQ+ ELTL++ DIV + DK W +GE HGR+G+FP N+V VLP
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEV--DKNWLEGEHHGRLGIFPANYVEVLPLE 59
Query: 88 DE 89
Sbjct: 60 HH 61
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 99.0 bits (247), Expect = 2e-28
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ +VLY Y+A N EL+L ++++ + S D W GE + G P ++ +L +
Sbjct: 17 NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNS 76
Query: 87 T 87
Sbjct: 77 G 77
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 98.2 bits (245), Expect = 5e-28
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
CK LY ++A+ +DEL L++ DIV++ + ++GWW G L+G+ G FP +V LP+
Sbjct: 7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKK--EEGWWFGSLNGKKGHFPAAYVEELPS 64
Query: 87 TD-ETSIKSEKPS 98
T+ K+ PS
Sbjct: 65 NAGNTATKASGPS 77
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 97.7 bits (244), Expect = 5e-28
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
+CKVL+ Y QNEDEL LK DI+ + ++GWW G L+ ++GLFP NFV L
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEV--EEGWWSGTLNNKLGLFPSNFVKELELE 59
Query: 88 DETS 91
Sbjct: 60 HHHH 63
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 98.3 bits (245), Expect = 5e-28
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
L Y N L+ D++ L+ + GW G GR GLFP + V
Sbjct: 9 GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAP 68
Query: 88 DETSIKSEKPSPAKST 103
D + K ++ S+
Sbjct: 69 DFSFSKEQRSGSGPSS 84
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 98.3 bits (245), Expect = 6e-28
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ + LY +EA ++ELT K +I++++ D WWKGE H +GLFP NFVT
Sbjct: 17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDS--DANWWKGENHRGIGLFPSNFVTTNLN 74
Query: 87 TDETSIKSEKPSPA 100
+ + PS
Sbjct: 75 IETEAAAVSGPSSG 88
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 98.2 bits (245), Expect = 6e-28
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
R K L +E ++DEL ++ DI+ +IS+ D+ W GEL+G G FP FV VL
Sbjct: 7 GRRAKALLDFERHDDDELGFRKNDIITIISQK--DEHCWVGELNGLRGWFPAKFVEVLDE 64
Query: 87 TDETSIKSEKPS 98
+ + PS
Sbjct: 65 RSKEYSIASGPS 76
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 98.3 bits (245), Expect = 8e-28
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 18 GRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFP 77
G R + RC+V + Y QN+DEL LK DI+ ++ ++GWW+G L+G+ G+FP
Sbjct: 9 GTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEV--EEGWWEGVLNGKTGMFP 66
Query: 78 DNFVTVL-PTTDETSIKSEKPS 98
NF+ L +DE I ++
Sbjct: 67 SNFIKELSGESDELGISQDEHH 88
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 97.1 bits (242), Expect = 2e-27
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 22 RQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
R L V + Y A+ EDEL+L + V+++ + GWW+G +G+VG FP N+V
Sbjct: 12 RLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKC--SDGWWRGSYNGQVGWFPSNYV 69
Query: 82 TVLPTTDETSIKSEKPS 98
T + PS
Sbjct: 70 TEEGDSPLGDHVGSGPS 86
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 96.1 bits (240), Expect = 2e-27
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
P+ +CK LY Y+AQ+ DEL+ DI+ +I D GWW G L G+ GLFP+N+VT
Sbjct: 2 PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKED--PSGWWTGRLRGKQGLFPNNYVTK 59
Query: 84 L 84
+
Sbjct: 60 I 60
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 96.1 bits (240), Expect = 2e-27
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
RC+V + Y QN+DEL LK DI+ ++ ++GWW+G L+G+ G+FP NF+ L
Sbjct: 7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEV--EEGWWEGVLNGKTGMFPSNFIKELSG 64
Query: 87 TD 88
Sbjct: 65 PS 66
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 96.2 bits (240), Expect = 2e-27
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP-DKGWWKGELHGRVGLFPDNFVTVLPT 86
K LY YE Q +DEL+ E I+ +++++ D G+W+GE +GR+G+FP V L +
Sbjct: 9 CFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 96.2 bits (240), Expect = 3e-27
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
K +CKVL+ Y QNEDEL LK DI+ + ++GWW G L+ ++GLFP NFV L
Sbjct: 7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEV--EEGWWSGTLNNKLGLFPSNFVKELEV 64
Query: 87 T 87
T
Sbjct: 65 T 65
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 95.8 bits (239), Expect = 4e-27
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP-DKGWWKGELHGRVGLFPDNFVTVLP 85
+ LY DEL DI+ ++ + P +GWWK LHGR GL P N + +L
Sbjct: 7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS 66
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 95.8 bits (239), Expect = 4e-27
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 20 RFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDN 79
F P+ + CK LY +E +N+ EL +E D++ L ++ D+ W++G LHG+ G FP +
Sbjct: 6 EFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQI--DENWYEGMLHGQSGFFPLS 63
Query: 80 FVTVLP 85
+V VL
Sbjct: 64 YVQVLV 69
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 95.8 bits (239), Expect = 5e-27
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ K + ++ NEDEL++ + DI+ + + + GWW+G L+GR G FP N+V + +
Sbjct: 10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVE--EGGWWEGTLNGRTGWFPSNYVREIKS 67
Query: 87 TDETSIKS 94
++ + S
Sbjct: 68 SERSGPSS 75
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 95.0 bits (237), Expect = 6e-27
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ + + ++ NEDEL+ + D++ + + + GWW+G +GR G FP N+V +
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYVREIKP 63
Query: 87 T 87
+
Sbjct: 64 S 64
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 94.9 bits (237), Expect = 6e-27
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ LY + + +L ++ D++ ++ + WW G ++GR G+FP N+V ++
Sbjct: 3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 94.9 bits (237), Expect = 7e-27
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
E +VL+ + + ++EL + +IV ++ + + W +G+ GL P N++ +
Sbjct: 8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKG--NDNWATVMFNGQKGLVPCNYLEPVS 63
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 94.8 bits (236), Expect = 1e-26
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL-- 84
KE LY Y+ ++ E+T+K+ DI+ L++ +K WWK E++ R G P +V L
Sbjct: 2 KELVLALYDYQEKSPREVTMKKGDILTLLNST--NKDWWKVEVNDRQGFVPAAYVKKLDP 59
Query: 85 -PTTDETSIKSEKPSPAKST 103
+ ++ P P S
Sbjct: 60 AQSASRENLGGPPPVPPYSA 79
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 94.7 bits (236), Expect = 1e-26
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
LY Y+A +DE++ +DI+ I D GWW+G GR GLFP N+V + +
Sbjct: 19 TAVALYDYQAAGDDEISFDPDDIITNIEMI--DDGWWRGVCKGRYGLFPANYVELRQSGP 76
Query: 89 ET 90
+
Sbjct: 77 SS 78
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 94.4 bits (235), Expect = 2e-26
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ ++ + EL K D++ ++ +K WW G++ G FP +FV +
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDAS--NKDWWWGQIDDEEGWFPASFVRLWVN 67
Query: 87 TDETSIKSEKPSPA 100
++ + PS
Sbjct: 68 QEDEVEEGSGPSSG 81
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 93.4 bits (233), Expect = 2e-26
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ + ++ NEDEL+ + D++ + + + GWW+G +GR G FP N+V +
Sbjct: 5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYVREI 59
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 93.4 bits (233), Expect = 2e-26
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
V + Y+AQ++DELT+ +I+ I ++ D GWW+G+++GR GLFPDNFV +
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKE--DGGWWEGQINGRRGLFPDNFVREI 56
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 93.9 bits (234), Expect = 2e-26
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
+ K LY +A+++ EL+ + + + GW +G L+G+ GL P+N+V
Sbjct: 7 GTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQ-EPGWLEGTLNGKTGLIPENYVEF 65
Query: 84 LP 85
L
Sbjct: 66 LS 67
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 93.5 bits (233), Expect = 3e-26
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
C+ LY +E +N+ EL KE DI+ L ++ D+ W++G +HG G FP N+V V+ +
Sbjct: 5 CCRGLYDFEPENQGELGFKEGDIITLTNQI--DENWYEGMIHGESGFFPINYVEVIVPLE 62
Query: 89 E 89
Sbjct: 63 H 63
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 94.0 bits (234), Expect = 3e-26
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
LY +E Q +L + D + +IS+ WW+G+L G+ G+FP N+VT+
Sbjct: 17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 93.0 bits (232), Expect = 3e-26
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ +Y YEAQ +DE+++ DI+ +I D GW GE G GLFP ++
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGS-GWTYGECDGLKGLFPTSYC 53
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 92.7 bits (231), Expect = 6e-26
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
+ + ++AQ EL L++ DIV + + D+ W++GE HGRVG+FP ++ +L
Sbjct: 8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQI--DQNWYEGEHHGRVGIFPRTYIELLS 63
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 92.2 bits (230), Expect = 6e-26
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ K LY Y+AQ DELT KE D +++ +D GWW+GEL+G+ G P N+V +
Sbjct: 3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKD--PAGWWEGELNGKRGWVPANYVQDI 58
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 92.7 bits (231), Expect = 7e-26
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
R K L Y +N +L + D+++L + D+ W++GE++G G+FP + V V+
Sbjct: 8 PRAKALCNYRGKNPGDLKFNKGDVILLRRQL--DENWYQGEINGVSGIFPASSVEVIS 63
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 92.8 bits (231), Expect = 7e-26
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
P + + L Y + L K DI+ + +D + W+ G+L+G+ G FP + V
Sbjct: 6 SPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQEN-KWFMGQLNGKEGSFPVDHVE 64
Query: 83 VLPTTDET 90
+L +
Sbjct: 65 ILLSDVPP 72
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 92.8 bits (231), Expect = 7e-26
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
V + + L + A+ ++ L + DI+ ++ + + WW GE+HG G FP ++V +
Sbjct: 7 GVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ---ENWWFGEVHGGRGWFPKSYVKI 63
Query: 84 LPTTDET 90
+P ++
Sbjct: 64 IPGSESG 70
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 92.3 bits (230), Expect = 7e-26
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
LY + Q ++L ++ DI+ L+ ++ WWKG++ R+G FP NFV L
Sbjct: 7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDS--NEDWWKGKIQDRIGFFPANFVQRLS 63
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 93.0 bits (231), Expect = 8e-26
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP---DKGWWKGELH-GRVGLFPDNFVT 82
++ YEA ++ELTL+ D V ++S+D D+GWW G+L GRVG+FP N+V
Sbjct: 29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 92.3 bits (230), Expect = 8e-26
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
C+ LY +E +NE EL KE DI+ L ++ D+ W++G LHG G FP N+V +L
Sbjct: 9 CCRALYDFEPENEGELGFKEGDIITLTNQI--DENWYEGMLHGHSGFFPINYVEILVALP 66
Query: 89 ETSIKS 94
+ S
Sbjct: 67 HSGPSS 72
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 92.3 bits (230), Expect = 8e-26
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
+ + LY +E + DEL +E DI+ + D WWKG GR GL P N+V
Sbjct: 8 KVFRALYTFEPRTPDELYFEEGDIIYITDMS--DTNWWKGTSKGRTGLIPSNYVAEQS 63
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 92.0 bits (229), Expect = 1e-25
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 26 LKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPD-KGWWKGELHGRVGLFPDNFVTVL 84
L K LY A++ DEL+ ++ DI+ ++ +D GWW LHGR G+ P N + +L
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL 61
Query: 85 P 85
Sbjct: 62 V 62
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 92.0 bits (229), Expect = 1e-25
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
KE LY Y+ ++ E+T+K+ DI+ L++ +K WWK E++ R G P +V L
Sbjct: 5 KELVLALYDYQEKSPREVTMKKGDILTLLNST--NKDWWKVEVNDRQGFVPAAYVKKLDP 62
Query: 87 TDETSIKSE 95
S ++
Sbjct: 63 AQSASRENL 71
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 92.0 bits (229), Expect = 1e-25
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
E+ +Y Y EDEL+ +E I+ +I ++ D GW++G ++G GLFP N+V +
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKN--DDGWYEGVMNGVTGLFPGNYVESIS 73
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 94.0 bits (233), Expect = 2e-25
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
P K Y + A++ EL+LKE DI+ ++++ +GWW+GE++GR+G FP N+V
Sbjct: 2 PGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKG-QQGWWRGEIYGRIGWFPSNYVEE 60
Query: 84 L-----PTTDETSIKSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEGESLDL 138
P T S S + ++ T+ D A K G +
Sbjct: 61 DYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVD-AATAEKVFKQYANDNGVDGEW 119
Query: 139 T 139
T
Sbjct: 120 T 120
Score = 30.0 bits (67), Expect = 0.18
Identities = 4/35 (11%), Positives = 12/35 (34%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDK 62
E+ Y + + E T + ++ + +
Sbjct: 103 EKVFKQYANDNGVDGEWTYDDATKTFTVTEHSLEH 137
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 91.1 bits (227), Expect = 2e-25
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVL 84
+R LY +E +N++EL L E DIV + + +GW E + GL P+ FV+ +
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKH--GQGWLVAENESGSKTGLVPEEFVSYI 58
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 91.1 bits (227), Expect = 2e-25
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
Q + + L+ YEA ++L +E DI++++S+ ++ W +GE G+VG+FP FV
Sbjct: 1 QLKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKV--NEEWLEGESKGKVGIFPKVFVE 58
Query: 83 VLPT 86
T
Sbjct: 59 DSAT 62
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 90.7 bits (226), Expect = 3e-25
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
V Y Y+A ++DELT++ +I+ + + + GW +GEL+GR G+FPDNFV +
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEE-GWLEGELNGRRGMFPDNFVKEIKRET 61
Query: 89 E 89
E
Sbjct: 62 E 62
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 91.7 bits (228), Expect = 3e-25
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ +Y Y A NEDEL+ + ++ ++++D D WW+GE++G GLFP N+V +
Sbjct: 34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKD--DPDWWQGEINGVTGLFPSNYVKMTTD 91
Query: 87 TDETS 91
+ S
Sbjct: 92 SSGPS 96
Score = 30.8 bits (70), Expect = 0.050
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 71 GRVGLFPDNFVTVLPTTDETSIKSEKPSP 99
G+ G FP + V +L + E + + P
Sbjct: 7 GQKGWFPASHVKLLGPSSERATPAFHPVC 35
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 90.3 bits (225), Expect = 4e-25
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ LY +EA EDEL + ++V ++ + WW G LH ++GLFP N+V +
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSS--NPSWWTGRLHNKLGLFPANYVAPM 56
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 90.8 bits (226), Expect = 4e-25
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
Y ++A +DEL+ K DI+ +++ + D+ W+K EL+G+ G P N++ + P
Sbjct: 9 SMEAIAKYDFKATADDELSFKRGDILKVLNEE-CDQNWYKAELNGKDGFIPKNYIEMKP 66
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 90.4 bits (225), Expect = 4e-25
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
+ + LY Y AQN DEL L DI+ +I + GWW E +G+ G P +++ L
Sbjct: 8 AQEYRALYDYTAQNPDELDLSAGDILEVILEG--EDGWWTVERNGQRGFVPGSYLEKLS 64
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 90.4 bits (225), Expect = 4e-25
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
LY Y+A +DE++ +DI+ I D GWW+G GR GLFP N+V +
Sbjct: 11 TAIALYDYQAAGDDEISFDPDDIITNIEMI--DDGWWRGVCKGRYGLFPANYVELR 64
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 90.5 bits (225), Expect = 5e-25
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ Y + EL+ K+ ++L R WW+G +G GL P ++ V T
Sbjct: 9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRA--SDDWWEGRHNGIDGLIPHQYIVVQDT 66
Query: 87 TDETS 91
+ +S
Sbjct: 67 SGPSS 71
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 89.5 bits (223), Expect = 7e-25
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ + L+ + Q EL K D++ LI++D D WW+G+L+ R G+FP N+V
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVC 55
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 90.1 bits (224), Expect = 7e-25
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ Y + EL+ + D++ L R WW+GE +G GL P ++T+
Sbjct: 10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERA--SSDWWRGEHNGMRGLIPHKYITLPAG 67
Query: 87 TDE 89
T++
Sbjct: 68 TEK 70
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 90.1 bits (224), Expect = 8e-25
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ + +Y +EA ++ELT K +I+ ++ D WWKGE H +GLFP NFVT
Sbjct: 17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDS--DPNWWKGETHQGIGLFPSNFVT 70
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 89.7 bits (223), Expect = 8e-25
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGL-FPDNFVT 82
P K K L+ Y+AQ EDELT + I+ + + + GWW+G+ G+ L FP N+V
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQ--EGGWWRGDYGGKKQLWFPSNYVE 60
Query: 83 VLPTTDETS 91
+ +
Sbjct: 61 EMVNPEGIH 69
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 89.7 bits (223), Expect = 9e-25
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 25 VLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
++ +R LY +E +N++EL L E DIV + + +GW E + GL P+ FV+
Sbjct: 3 IVNQRAVALYDFEPENDNELRLAEGDIVFISYKH--GQGWLVAENESGSKTGLVPEEFVS 60
Query: 83 VLPTTDE 89
+ E
Sbjct: 61 YIQPELE 67
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 89.6 bits (223), Expect = 9e-25
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
R + LY +EA ++ELT K +++ ++ D WW+GE H GLFP NFVT
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITVLDDS--DANWWQGENHRGTGLFPSNFVT 58
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 89.8 bits (223), Expect = 1e-24
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ R + + D L LK+ DI+ +IS+ G W G L+ +VG F +V
Sbjct: 7 GFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKP--PMGTWMGLLNNKVGTFKFIYVD 64
Query: 83 VLPTTDET 90
VL + +
Sbjct: 65 VLSSGPSS 72
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 88.8 bits (221), Expect = 1e-24
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ L+ ++ Q + EL + D + ++ D WWKG HG+ G+FP N+VT +
Sbjct: 3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNS--DPNWWKGACHGQTGMFPRNYVTAV 57
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 89.3 bits (222), Expect = 1e-24
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG---RVGLFPDNFVTV 83
R K +Y +A N+DELT E +++++ + D+ WW G + G R G+FP +FV +
Sbjct: 10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEE--DQEWWIGHIEGQPERKGVFPVSFVHI 67
Query: 84 LPTTDETS 91
L + +S
Sbjct: 68 LSDSGPSS 75
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 88.7 bits (221), Expect = 1e-24
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
E + LY ++ Q + +L LK D V L+ + W+KG +GR G+FP N+V
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKL--SPEWYKGSCNGRTGIFPANYV 54
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 89.3 bits (222), Expect = 2e-24
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
R + L+ + ++ EL K D++ L+SR +K W +G + G G+FP +FV +L
Sbjct: 18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRI--NKDWLEGTVRGATGIFPLSFVKILKD 75
Query: 87 TDE 89
E
Sbjct: 76 FPE 78
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 88.9 bits (221), Expect = 2e-24
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+E+ + PY +Q++DE+ ++ V +I ++ +GWW G+ G P +++
Sbjct: 8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKN--LEGWWYIRYLGKEGWAPASYLKKAKD 65
Query: 87 TDETS 91
+ +S
Sbjct: 66 SGPSS 70
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 88.4 bits (220), Expect = 2e-24
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
KE VLY Y+ ++ ELT+K+ DI+ L++ +K WWK E++GR G P ++ L
Sbjct: 6 KELVLVLYDYQEKSPRELTVKKGDILTLLNST--NKDWWKIEVNGRQGFVPAAYLKKL 61
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 87.2 bits (217), Expect = 7e-24
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ + LY +E + DEL +E DI+ + D WWKG GR GL P N+V
Sbjct: 3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMS--DTNWWKGTSKGRTGLIPSNYV 55
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 86.9 bits (216), Expect = 8e-24
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
E + Y ++ EL+ K+ ++L R + WW+G +G GL P ++ V
Sbjct: 6 PEFAIAKFDYVGRSARELSFKKGASLLLYHR--ASEDWWEGRHNGIDGLVPHQYIVV 60
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 87.0 bits (216), Expect = 1e-23
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTV 83
E+ V+ Y+ Q EL+L+ ++V +I ++ + GWW G P ++
Sbjct: 5 SSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKN--ESGWWFVSTSEEQGWVPATYLEA 62
Query: 84 LPTTDET 90
+ +
Sbjct: 63 QNSGPSS 69
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 86.1 bits (214), Expect = 2e-23
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGL-FPDNFVTVLP 85
K K L+ Y+AQ EDELT + I+ + + D GWW+G+ G+ L FP N+V +
Sbjct: 3 KSAVKALFDYKAQREDELTFTKSAIIQNVEKQ--DGGWWRGDYGGKKQLWFPSNYVEEMI 60
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 85.4 bits (212), Expect = 5e-23
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVL 84
+ +Y Y AQ+EDE++ ++ D +V + D GW G + GR G+ P N++ +
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNV--QPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 84.9 bits (211), Expect = 5e-23
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
R + L+ + ++ EL K D++ L+SR +K W +G + G G+FP +FV +L
Sbjct: 4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRI--NKDWLEGTVRGATGIFPLSFVKIL 59
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 86.0 bits (213), Expect = 5e-23
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 18 GRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRD--APDKGWWKG--ELHGRV 73
G R + E +V+YPY QN+DEL L D + + + + +GW G G
Sbjct: 7 GSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCS 66
Query: 74 GLFPDNFVTVLPTTD-ETSIKSEKPS 98
GL P+N++T S PS
Sbjct: 67 GLLPENYITKADECSTWIFHGSSGPS 92
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 84.6 bits (210), Expect = 8e-23
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRV-GLFPDNFVTVL 84
K LY Y+A+ DELT ++ +S++ GWWKG+ R+ FP N+V +
Sbjct: 8 RTVKALYDYKAKRSDELTFCRGALIHNVSKE--PGGWWKGDYGTRIQQYFPSNYVEDI 63
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 85.2 bits (211), Expect = 8e-23
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLPT 86
+ LYP+ + E+EL ++ + + +I + D WWK + G+VGL P N+V VL
Sbjct: 18 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 77
Query: 87 TDETSIKSEKPSPA 100
PS
Sbjct: 78 GPALHPAHSGPSSG 91
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 85.1 bits (211), Expect = 9e-23
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
KE LY Y+ ++ E+T+K+ DI+ L++ +K WWK E++ R G P +V L
Sbjct: 17 KELVLALYDYQEKSPREVTMKKGDILTLLNST--NKDWWKVEVNDRQGFVPAAYVKKLAA 74
Query: 87 TD 88
Sbjct: 75 AW 76
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 85.2 bits (211), Expect = 1e-22
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
+ A ++ L L+ DIV + + G W+GE++GR GLFP V + +
Sbjct: 20 KAIQKRVPCAYDKTALALEVGDIVKVTRMN--INGQWEGEVNGRKGLFPFTHVKIFDPQN 77
Query: 89 ETSIKSEKPS 98
+S S
Sbjct: 78 PDENESGPSS 87
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 84.2 bits (209), Expect = 1e-22
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVLP 85
+ +Y Y QNEDEL L+E D V ++ + D GW+ G + G FP N+V +
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQC--DDGWFVGVSRRTQKFGTFPGNYVAPVS 65
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 83.9 bits (208), Expect = 2e-22
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 29 RCKVLYPYEAQ-NEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPT 86
+ +V+Y + A+ +ELT+ E +I+ + + + GW +G+ G GL P ++V +LP
Sbjct: 11 KARVMYDFAAEPGNNELTVTEGEIITVTNPNV-GGGWLEGKNNKGEQGLVPTDYVEILPN 69
Query: 87 TDETSI 92
+
Sbjct: 70 DGKDPF 75
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 83.6 bits (207), Expect = 3e-22
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGR-----VGLFPDNFV 81
E +V Y A ++L+L +++++ ++ GWW+GEL R G FP + V
Sbjct: 7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKN--TSGWWQGELQARGKKRQKGWFPASHV 64
Query: 82 TVLPTTDETSIKSEKPSPAKS 102
+L + SE+ S S
Sbjct: 65 KLLGPS------SERASGPSS 79
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 83.1 bits (206), Expect = 3e-22
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
E + Y A +E +L+ + ++++ + WW GE G G P N V
Sbjct: 8 EEFVAIADYAATDETQLSFLRGEKILILRQT--TADWWWGERAGCCGYIPANHVGKHS 63
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 82.8 bits (205), Expect = 4e-22
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 30 CKVLYPYE--AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
K + A ++ L L+ DIV + + G W+GE++GR GLFP V +
Sbjct: 4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMN--INGQWEGEVNGRKGLFPFTHVKIFDPQ 61
Query: 88 DET 90
+
Sbjct: 62 NPD 64
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 81.9 bits (203), Expect = 8e-22
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVL 84
Y Y+A ++ELT E D ++ I D WW GEL G GLFP N+V++
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFV--DDDWWLGELEKDGSKGLFPSNYVSLG 57
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 81.5 bits (202), Expect = 1e-21
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH-GRVGLFPDNFVTVL 84
R + LY Y+ Q +DEL+ K D + + + GW +G L G++GL+P N+V +
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQ-GWCRGRLDSGQLGLYPANYVEAI 60
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 82.0 bits (203), Expect = 1e-21
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 28 ERCKVLYPYEAQN-------EDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNF 80
R LY Y+ + E ELT DI+ + D G++ GEL+G+ GL P NF
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDED-GFYYGELNGQKGLVPSNF 66
Query: 81 VTVLP 85
+ +
Sbjct: 67 LEEVS 71
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 82.1 bits (203), Expect = 2e-21
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNF 80
Q + Y ++ E EL+ ++ + + LI + ++ W++G + GR G+FP ++
Sbjct: 13 QVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKV--NENWYEGRITGTGRQGIFPASY 70
Query: 81 VTVLPTTDETSIKSEKPS 98
V V PS
Sbjct: 71 VQVSREPRLRLCDDSGPS 88
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 81.2 bits (201), Expect = 2e-21
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
E LYPY + +LT E + +++ +D WW G + R G+FP N+V +
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDG---EWWTGSIGDRSGIFPSNYVKPKDSG 65
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 80.9 bits (200), Expect = 3e-21
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP--DKGWWKGELHGRVGLFPDNFVTVL 84
+ +Y ++A+N +EL++ + ++ + WW E++G+ G P N++
Sbjct: 13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKT 72
Query: 85 PT 86
+
Sbjct: 73 ES 74
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 80.1 bits (198), Expect = 4e-21
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 30 CKVLYPYE--AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
+V+ A ++ L L+ ++V + + G W+GE +G+ G FP V +L
Sbjct: 9 ARVIQKRVPNAYDKTALALEVGELVKVTKIN--VSGQWEGECNGKRGHFPFTHVRLLDQQ 66
Query: 88 D 88
+
Sbjct: 67 N 67
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 80.1 bits (198), Expect = 5e-21
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPT 86
LY Y A DELT+ DI+ + +D ++ WW G + G+ G FP N V
Sbjct: 7 PTVVALYDYTANRSDELTIHRGDIIRVFFKD--NEDWWYGSIGKGQEGYFPANHVASETL 64
Query: 87 TDE 89
E
Sbjct: 65 YQE 67
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 80.4 bits (199), Expect = 5e-21
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLP 85
+ LYP+ + E+EL ++ + + +I + D WWK + G+VGL P N+V VL
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 80.0 bits (198), Expect = 5e-21
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVTVLP 85
+ + + E++ ++ + + L+ + D+ W++G + G R G+FP +V V+
Sbjct: 8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQV--DENWYEGRIPGTSRQGIFPITYVDVIS 65
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 81.1 bits (200), Expect = 5e-21
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 22 RQPVLKERCKVLYPYEAQN--------EDELTLKEEDIVVLISRDAPDKGWWKGELHGRV 73
+ + L+ Y+ E+EL KE I+ + D G+++GE R+
Sbjct: 12 AEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDAD-GFYRGETCARL 70
Query: 74 GLFPDNFVTVLPTTDETSIKSEKPSP 99
GL P N V+ + DE + PS
Sbjct: 71 GLIPCNMVSEIQADDEEMMDQSGPSS 96
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 80.5 bits (199), Expect = 5e-21
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLPTT 87
CKV+Y Y+A DELT++E +++ +I + W K G+VG P+ ++ ++
Sbjct: 15 TCKVVYSYKASQPDELTIEEHEVLEVIEDGDME-DWVKARNKVGQVGYVPEKYLQFPTSS 73
Query: 88 DETS 91
+S
Sbjct: 74 GPSS 77
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 80.6 bits (199), Expect = 7e-21
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRD--APDKGWWKGELHGR-VGLFPDNFVTV 83
+ Y + A +++E++ + D++ L ++ +GW L G+ GL P N+V +
Sbjct: 17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKI 76
Query: 84 LPTTDETSIKSEKPSPA 100
L PS
Sbjct: 77 LGKRRGRKTIESGPSSG 93
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 79.2 bits (196), Expect = 1e-20
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLP 85
L+ Y A +EL L++ + + ++ + GW KG L GR G+FP ++V +
Sbjct: 8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKY--QDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 78.7 bits (195), Expect = 1e-20
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK--GELHGRVGLFPDNFVTV 83
KVLY Y +++DE+T+ D + L++RD GW K + G GL P ++ +
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGS-GWTKINNDTTGETGLVPTTYIRI 58
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 78.1 bits (193), Expect = 3e-20
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG--RVGLFPDNFVTVLP 85
+ + + E++ ++ + + L+ + D+ W++G + G R G+FP +V V+
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQV--DENWYEGRIPGTSRQGIFPITYVDVIK 64
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 78.7 bits (194), Expect = 3e-20
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
Y+ + E++ V ++ + + GWW G P +++ +
Sbjct: 8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQ--ESGWWYVRFGELEGWAPSHYLVLDEN 65
Query: 87 TD-ETSIKSEKPSPA 100
+ S K PS
Sbjct: 66 EQPDPSGKESGPSSG 80
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 78.1 bits (193), Expect = 3e-20
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG-----RVGLFP 77
+P + + +PY++ ED+L +++ +++ S + D W+ GE G+FP
Sbjct: 3 EPEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVE--DAEWYFGEYQDSNGDVIEGIFP 60
Query: 78 DNFVTV 83
+FV V
Sbjct: 61 KSFVAV 66
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 79.4 bits (195), Expect = 3e-20
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 24 PVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDK---GWWKG----------ELH 70
P + + + Y A + DEL LK D+V++I P++ GW G EL
Sbjct: 41 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELE 100
Query: 71 GRVGLFPDNFVTVL 84
G+FP+NF +
Sbjct: 101 KCRGVFPENFTERV 114
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 77.8 bits (192), Expect = 5e-20
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 27 KERCKVLYPYEAQ-NEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTV 83
++ K ++P+ A N+ L+ + D++ L+ + D GW GE G FP ++ +
Sbjct: 7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD-GWLYGEHDTTKARGWFPSSYTKL 65
Query: 84 LP 85
L
Sbjct: 66 LS 67
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 77.3 bits (191), Expect = 6e-20
Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVL 84
++ + ++ + ++EDEL L+ +D +++ + + W++ G G+FP + +
Sbjct: 6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQA--EDYWYEAYNMRTGARGVFPAYYAIEV 63
Query: 85 PTTDET 90
E
Sbjct: 64 TKEPEH 69
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 80.8 bits (199), Expect = 6e-20
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ ++ + + + YE + E+ L D+V ++ + + GWW ++ + G P +F+
Sbjct: 7 EFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLE 64
Query: 83 VLPTTDETSIKSEKPSPAK 101
L + DET +
Sbjct: 65 PLDSPDETEDPEPNYAGEP 83
Score = 79.3 bits (195), Expect = 3e-19
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTT 87
E + Y A DE++L E + V +I + GWW G FP ++
Sbjct: 82 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKL--LDGWWVIRKDDVTGYFPSMYLQKSG-Q 138
Query: 88 DETSIKSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKK 131
D + + + A + IR++ + + L + N
Sbjct: 139 DVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRNSV 182
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 76.8 bits (189), Expect = 7e-20
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
V + Y A+ EDEL+L V ++ + GWW+G +G++G FP N+V
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVM--EXCSDGWWRGSYNGQIGWFPSNYVLEE 56
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 76.2 bits (188), Expect = 2e-19
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLPT 86
C +Y +E +E +++ E + + L+ D D GW + G G P +++ V
Sbjct: 9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGD-GWTRVRRKEGGEGYVPTSYLRVTSG 66
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 76.3 bits (188), Expect = 2e-19
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 27 KERCKVLYPYEAQN-------EDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDN 79
+ Y+ + + L L+ D+V++ G++ GEL G GL P +
Sbjct: 7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQ-GFYYGELGGHRGLVPAH 65
Query: 80 FVTVLPT 86
+ +
Sbjct: 66 LLDHMSL 72
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 76.1 bits (188), Expect = 2e-19
Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVL 84
++ + ++ + ++EDEL L+ +D +++ + + W++ G G+FP + +
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQA--EDYWYEAYNMRTGARGVFPAYYAIEV 60
Query: 85 P 85
Sbjct: 61 T 61
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 75.8 bits (187), Expect = 2e-19
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 27 KERCKVLYPYEA-QNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTV 83
+ R K ++ + A N L+ KE D++ L+ + GW GE G FP ++ V
Sbjct: 7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPE-ARDGWHYGESEKTKMRGWFPFSYTRV 65
Query: 84 L 84
L
Sbjct: 66 L 66
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 75.7 bits (187), Expect = 2e-19
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVL 84
ER V Y + A+++DELT+K D V ++ D K WW +L G+ GL P F+ +
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILD-DKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 75.5 bits (186), Expect = 3e-19
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 27 KERCKVLYPYEAQN-EDELTLKEEDIVVLISRDAP---DKGWWKGEL-HGRVGLFPDNFV 81
+ LY + +N E E+ LK+ D++ ++S+ P D WWK +G +G P N++
Sbjct: 7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66
Query: 82 TVL 84
++
Sbjct: 67 EII 69
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 75.0 bits (185), Expect = 6e-19
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLP 85
+ K+LY + A+N +EL++ +++++ ++ + + W G+ G P N +
Sbjct: 7 GKYVKILYDFTARNANELSVLKDEVLEVL--EDGRQWWKLRSRSGQAGYVPCNILGEAS 63
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 75.0 bits (185), Expect = 6e-19
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVL 84
K+R V Y + A+++DELT+K D V ++ D K WW +L G+ GL P F+ +
Sbjct: 6 KKRGIVQYDFMAESQDELTIKSGDKVYILD-DKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64
Query: 85 PTTDETSIKSEK 96
K +
Sbjct: 65 -----RDKKHTE 71
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 75.3 bits (185), Expect = 8e-19
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 29 RCKVLYPYEAQ------NEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
C Y Y E EL L + + D G+++GE L G+ GL P NFV
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDED-GFYEGELLDGQRGLVPSNFV 77
Query: 82 TVLPTTDETSIKSEKPS 98
+ + + PS
Sbjct: 78 DFVQDNESRLASTSGPS 94
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 74.2 bits (183), Expect = 9e-19
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLPT 86
E + L+ + +E++L K+ DI+ + + ++ WW E G+ G+ P +V
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKP--EEQWWNAEDSEGKRGMIPVPYVEKYHH 61
Query: 87 TDE 89
Sbjct: 62 HHH 64
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 75.7 bits (186), Expect = 9e-19
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGR---VGLFPDNFVTVLPTT 87
LY ++A+ +DEL + + + + + D W+ + R GL P ++V ++
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHY--DYEWFIAKPINRLGGPGLVPVSYVRIIDLM 64
Query: 88 DETSIKSEKPSPAKSTTNRIRDS 110
D S + I +
Sbjct: 65 DPAKYASVDTYDREQVMKIIDEF 87
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 74.7 bits (184), Expect = 9e-19
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLP 85
+ ++ + A+ DE+TL++ D+V+++ + + GW GE G G FP++F +
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVLQQ---EDGWLYGERLRDGETGWFPEDFARFIS 74
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 74.9 bits (184), Expect = 1e-18
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 23 QPVLKERCKVLYPYEAQN-EDELTLKEEDIVVLISRDAP---DKGWWKGEL-HGRVGLFP 77
P E + LY + +N E E+ LK+ D++ ++S+ P D WWK +G +G P
Sbjct: 10 DPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIP 69
Query: 78 DNFVTVLPTTDETSIKSEKPS 98
N++ ++ + ++
Sbjct: 70 YNYIEIIKRRKKIEHVDDETR 90
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 73.8 bits (182), Expect = 1e-18
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPT 86
+ +VLY +EA+N ELT+ + + + ++ D + W GR G P N + L
Sbjct: 8 LKMQVLYEFEARNPRELTVVQGEKLEVL--DHSKRWWLVKNEAGRSGYIPSNILEPLSG 64
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 73.9 bits (182), Expect = 1e-18
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 27 KERCKVLYPYEA-QNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTV 83
K++ K ++P+ A N+ L+ + D++ L+ + D GW GE G FP ++ +
Sbjct: 6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD-GWLYGEHDVSKARGWFPSSYTKL 64
Query: 84 LP 85
L
Sbjct: 65 LE 66
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 79.2 bits (194), Expect = 2e-18
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 20 RFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDN 79
+ + R A ++ L L+ ++V + + G W+GE +G+ G FP
Sbjct: 232 NLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKIN--VSGQWEGECNGKRGHFPFT 289
Query: 80 FVTVLPTTDETS 91
V +L +
Sbjct: 290 HVRLLDQQNPEE 301
Score = 65.8 bits (159), Expect = 1e-13
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLP 85
E + L+ + +E++L K+ DI+ + + ++ WW E G+ G+ P +V
Sbjct: 134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKP--EEQWWNAEDSEGKRGMIPVPYVEKYR 191
Query: 86 TTDETSIKSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEG 133
+ + S + P + +L N
Sbjct: 192 PASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 74.1 bits (182), Expect = 2e-18
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 38 AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETSIKSEKP 97
A E+T+K+ DI+ L++ +K WWK E++ R G P +V L + +
Sbjct: 2 AMGPREVTMKKGDILTLLNST--NKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALY 59
Query: 98 SPAKSTTN 105
+S N
Sbjct: 60 DYQESGDN 67
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 74.0 bits (182), Expect = 2e-18
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 23 QPVLKERCKVLYPYEAQN-EDELTLKEEDIVVLISRDAP---DKGWWKGEL-HGRVGLFP 77
P E + LY + +N E E+ LK+ D++ ++S+ P D WWK +G +G P
Sbjct: 10 DPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIP 69
Query: 78 DNFVTVLP 85
N++ ++
Sbjct: 70 YNYIEIIK 77
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 74.1 bits (182), Expect = 3e-18
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRV---GLFPDNFVTVLPTT 87
VLY ++A+ DELT + + + + + W+ + GR+ GL P FV+++
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHH--NCEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66
Query: 88 DETSIKSEKPSPAKST 103
+ ++ KS
Sbjct: 67 TGYATGNDVIEDIKSV 82
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 72.0 bits (177), Expect = 8e-18
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL-PTTDE 89
L PY A E+T+K+ DI+ L++ +K WWK E++ R G P +V L T +
Sbjct: 4 PPLPPYSAGG-REVTMKKGDILTLLNST--NKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 60
Query: 90 TSIKSEKPSPAKS 102
+ + KS
Sbjct: 61 ELVLALYDYQEKS 73
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 71.4 bits (176), Expect = 8e-18
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVT 82
E + L+ + +E++L K+ DI+ + + ++ WW E G+ G+ P +V
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKP--EEQWWNAEDSEGKRGMIPVPYVE 55
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 71.2 bits (175), Expect = 2e-17
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
LY YEA ED+L+ + + +++ + WW+ G G P N+V
Sbjct: 16 TLFVALYDYEAITEDDLSFHKGEKFQILNSS--EGDWWEARSLTTGETGYIPSNYVA 70
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 71.4 bits (175), Expect = 2e-17
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 24 PVLKERCKVLYPYE-AQNEDELTLKEEDIVVLISRDAPDKGWWKGELHG------RVGLF 76
P + + L + + L ++ D++ ++ + G WKG +H R+G F
Sbjct: 15 PRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQH--PDGRWKGHIHESQRGTDRIGYF 72
Query: 77 PDNFVTVL 84
P V V+
Sbjct: 73 PPGIVEVV 80
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 70.8 bits (174), Expect = 2e-17
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKG-ELHGRVGLFPDNFVT 82
E + + AQ +LT K+ +I+++I + GWW + G GL P ++
Sbjct: 10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKK--PDGWWIAKDAKGNEGLVPRTYLE 64
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 75.8 bits (185), Expect = 3e-17
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 22 RQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFV 81
+ + + A ++ L L+ DIV + + G W+GE++GR GLFP V
Sbjct: 234 QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMN--INGQWEGEVNGRKGLFPFTHV 291
Query: 82 TVLPTTD 88
+ +
Sbjct: 292 KIFDPQN 298
Score = 59.3 bits (142), Expect = 2e-11
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFV 81
E + LY + + ++L K+ +I+V+I + ++ WW GRVG+ P +V
Sbjct: 125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKP--EEQWWSARNKDGRVGMIPVPYV 178
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 69.6 bits (171), Expect = 6e-17
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVT 82
++ LY Y N ++L L++ D ++ + + WW+ +G+ G P N+VT
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFIL--EESNLPWWRARDKNGQEGYIPSNYVT 62
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 69.3 bits (170), Expect = 1e-16
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLPTTD-E 89
LY Y A +L+ + + ++ WW+ G G P N+V + + E
Sbjct: 12 LYDYNATRWTDLSFHKGEKFQILEFG--PGDWWEARSLTTGETGYIPSNYVAPVDSIQGE 69
Query: 90 TSIKSEKPS 98
+ SE+
Sbjct: 70 QKLISEEDL 78
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 68.8 bits (169), Expect = 1e-16
Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 32 VLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
LY + A ++ L++ + + + ++ + + W + + G P ++T
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYN-HNGEWCEAQTKNGQGWVPSAYIT 59
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 72.4 bits (177), Expect = 1e-16
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTD 88
Y ++A +DEL+ K DI+ +++ + D+ W+K EL+G+ G P N++ + P
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEE-CDQNWYKAELNGKDGFIPKNYIEMKPHPW 60
Query: 89 ETSIKSEKPS------PAKSTTNRIRDSITKPSD 116
+ IR+S + P D
Sbjct: 61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGD 94
Score = 65.5 bits (159), Expect = 6e-14
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL 84
+ L+ ++ Q + EL + D + ++ D WWKG HG+ G+FP N+VT +
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNS--DPNWWKGACHGQTGMFPRNYVTPV 213
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 69.0 bits (169), Expect = 1e-16
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL---------HGRVGLFPD 78
+ L+ Y+A+ ++L+ + D + ++ +GWW G P
Sbjct: 8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTS--HEGWWLARHLEKKGTGLGQQLQGYIPS 65
Query: 79 NFVTVLPT 86
N+V
Sbjct: 66 NYVAEDSG 73
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 68.5 bits (168), Expect = 2e-16
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 28 ERCKVLYPYEAQNED--ELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVL 84
+ K LYPY+A ++D E++ ++ +I+ + + WWK +G G+ P N+V ++
Sbjct: 6 YKAKALYPYDADDDDAYEISFEQNEILQVSDIE---GRWWKARRANGETGIIPSNYVQLI 62
Query: 85 PTTDET 90
+E
Sbjct: 63 DGPEEM 68
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 68.9 bits (169), Expect = 2e-16
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLPTTD 88
+ LY YEA+ ED+L+ + + +++ + WW+ G G P ++ + D
Sbjct: 9 EALYDYEARTEDDLSFHKGEKFQILNSS--EGDWWEARSLTTGETGYIPSIYLAPVDRLD 66
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 73.5 bits (179), Expect = 2e-16
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ R + L+ + ++ EL K D++ L+SR +K W +G + G G+FP +FV
Sbjct: 170 DRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRI--NKDWLEGTVRGATGIFPLSFVK 227
Query: 83 VLPTTDETSIKSEKPS 98
+L E +
Sbjct: 228 ILKDFPEEDDPTNWLR 243
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 67.7 bits (166), Expect = 4e-16
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLPT 86
E +Y ++A +L L+ +++ + D WW+ +G G P N+VT +
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIIL--EKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60
Query: 87 TD 88
+
Sbjct: 61 NN 62
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 67.7 bits (166), Expect = 4e-16
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 28 ERCKVLYPYEA-QNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVL 84
R + + PY + DE++ + D+ ++ + + GW GL ++ V
Sbjct: 8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNE--LEDGWMWVTNLRTDEQGLIVEDLVE-- 63
Query: 85 PTTDETS 91
+ +S
Sbjct: 64 EVSGPSS 70
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 66.9 bits (164), Expect = 7e-16
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFV 81
C Y + E +L + D++ +++ D W+K + GR G+ P N+V
Sbjct: 12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVT-KDPNWYKAKNKVGREGIIPANYV 65
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 66.5 bits (163), Expect = 9e-16
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 29 RCKVLYPYEAQ-NEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVT 82
+ Y + + EL LK+ D++ + + GW G+L + G P ++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREE--PSGWSLGKLLDGSKEGWVPTAYMK 56
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 71.4 bits (174), Expect = 1e-15
Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLPT 86
E + + + E +L ++ + + ++S+ ++ WW+ G GL P N+V +
Sbjct: 148 EVVVGTFKFTGERETDLPFEQGERLEILSKT--NQDWWEARNALGTTGLVPANYVQIQME 205
Query: 87 TDETSIKSEKPSPAKSTTNRIRDSITKPSDTT 118
+ ++ + + S ++
Sbjct: 206 FHNDRTSKGASQSSIGSSGGGAERFSSASTSS 237
Score = 71.0 bits (173), Expect = 1e-15
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 18 GRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFP 77
+ K + A + +L +K+ V++ + G +K EL G++G P
Sbjct: 240 IELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKM--SNGMYKAELDGQIGSVP 297
Query: 78 DNFVTVLPTTD 88
++ ++
Sbjct: 298 HTYLRFTAVSE 308
Score = 34.8 bits (79), Expect = 0.007
Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 34 YPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETSIK 93
Y + DE ++ + G + FPD + +
Sbjct: 78 YSLTVREADEGNAVCHYLIERGEP--KEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE 135
Query: 94 SEKPSPAKSTTNR 106
+ + K
Sbjct: 136 ASLLAAYKKPIIE 148
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 66.9 bits (163), Expect = 1e-15
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAP-------------DKGWWKG--ELHGRV 73
+ + LYP+ + ++L L D++V+ GW G E +
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 74 GLFPDNFVTVLPT 86
G FP +V L
Sbjct: 73 GDFPGTYVEFLGP 85
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 65.8 bits (161), Expect = 2e-15
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 42 DELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVL-PTTDETSIKSEKPSPA 100
E+T+K+ DI+ L++ +K WWK E++ R G P +V L T + + +
Sbjct: 4 REVTMKKGDILTLLNST--NKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQE 61
Query: 101 KS 102
KS
Sbjct: 62 KS 63
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 65.8 bits (161), Expect = 2e-15
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVLP 85
+ Y ++A+N EL++K+ D++ ++ + WWK G+ G P N +T P
Sbjct: 9 KWVLCNYDFQARNSSELSVKQRDVLEVLDD---SRKWWKVRDPAGQEGYVPYNILTPYP 64
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 65.3 bits (160), Expect = 2e-15
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLP 85
K+ K Y + A+N EL++ ++D++ ++ + WWK G G P+N + ++
Sbjct: 1 KKYAKSKYDFVARNSSELSVMKDDVLEILDD---RRQWWKVRNASGDSGFVPNNILDIMR 57
Query: 86 T 86
T
Sbjct: 58 T 58
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 65.1 bits (159), Expect = 3e-15
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK--------GELHGRVGLFPD 78
KE LY Y+ ++ E+T+K+ DI+ L++ +K WWK G+ + R G P
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNST--NKDWWKVEVKITVNGKTYERQGFVPA 58
Query: 79 NFVTVL 84
+V L
Sbjct: 59 AYVKKL 64
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 65.1 bits (159), Expect = 3e-15
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 26 LKERCKVLYPYEA-QNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVT 82
++ R + + PY + DE++ + D+ ++ + + GW GL ++ V
Sbjct: 4 MRRRVRAILPYTKVPDTDEISFLKGDMFIVH--NELEDGWMWVTNLRTDEQGLIVEDLVE 61
Query: 83 VL 84
+
Sbjct: 62 EV 63
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 65.5 bits (160), Expect = 4e-15
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLP 85
+ LY Y+ + EL L+ + L+ WW+ + +G G P +++
Sbjct: 19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIH--WWRVQDRNGHEGYVPSSYLVEKS 76
Query: 86 TT 87
Sbjct: 77 PN 78
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 65.1 bits (159), Expect = 5e-15
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFV 81
+C + EL ++ D+V ++ +K W++ + H G+ GL +
Sbjct: 18 TQCITKCEHTRPKPGELAFRKGDVVTILEAC-ENKSWYRVKHHTSGQEGLLAAGAL 72
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 64.6 bits (158), Expect = 5e-15
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 27 KERCKVLYPYEAQ-NEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTV 83
+ + Y + + EL LK+ DIV + + GW +L + G P ++T
Sbjct: 2 DPKFEAAYDFPGSGSSSELPLKKGDIVFISRDE--PSGWSLAKLLDGSKEGWVPTAYMTP 59
Query: 84 LPTTDET 90
T T
Sbjct: 60 YKDTRNT 66
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 63.9 bits (156), Expect = 1e-14
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNF 80
P+ L+ YE ++ +L ++ + + ++ + WWK + G+ G P NF
Sbjct: 2 SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ---SGEWWKAQSLTTGQEGFIPFNF 58
Query: 81 V 81
V
Sbjct: 59 V 59
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 63.1 bits (154), Expect = 2e-14
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVTVLP 85
+ LYPY+ + D+L+ K+ + + ++ WWK + L + G P N+V L
Sbjct: 8 DIVVALYPYDGIHPDDLSFKKGEKMKVLEEHG---EWWKAKSLLTKKEGFIPSNYVAKLN 64
Query: 86 T 86
T
Sbjct: 65 T 65
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 63.9 bits (155), Expect = 4e-14
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 22 RQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL---HGRVGLFPD 78
+ +Y ++ +L+L+ D+V + W++G L G+FP
Sbjct: 54 SSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGD---WYRGYLIKHKMLQGIFPK 110
Query: 79 NFVTVLPTT 87
+F+ + T
Sbjct: 111 SFIHIKEVT 119
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 62.4 bits (152), Expect = 5e-14
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 19 RRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFP 77
RR Q + LY Y+ + EL L+ ++ L+ D+ + WW+ + +G G P
Sbjct: 12 RRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLL--DSSEIHWWRVQDKNGHEGYAP 69
Query: 78 DNFVT 82
+++
Sbjct: 70 SSYLV 74
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 62.9 bits (153), Expect = 7e-14
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNFVT 82
LY YEA+ ++L+ K+ + +I+ + WW+ G+ G P N+V
Sbjct: 27 VTIFVALYDYEARTTEDLSFKKGERFQIINNT--EGDWWEARSIATGKSGYIPSNYVV 82
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 61.6 bits (150), Expect = 1e-13
Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-----HGRVGLFP 77
Q L + L+ ++++ ++EL+ + D+ + ++ ++ WW L G P
Sbjct: 6 QAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKE--EQWWWATLLDEAGGAVAQGYVP 63
Query: 78 DNFVTVLPT 86
N++ T
Sbjct: 64 HNYLAERET 72
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 64.7 bits (156), Expect = 1e-13
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAP---DKGWWKG----------EL 69
P + + + Y A + DEL LK D+V++I P D+GW G +L
Sbjct: 138 PPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKL 197
Query: 70 HGRVGLFPDNFVTVLP 85
G+FP+NF +P
Sbjct: 198 EKCRGVFPENFTERVP 213
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 61.2 bits (149), Expect = 1e-13
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLP 85
+ + Y AQ E EL +K+ + + L+ K WW+ + G P N+V
Sbjct: 7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD---SKSWWRVRNSMNKTGFVPSNYVERKN 63
Query: 86 TTDETSIKSEKPS 98
S ++ S
Sbjct: 64 -----SARAAANS 71
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 61.3 bits (149), Expect = 1e-13
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVT 82
LY YEA + ++L+ ++ D +V++ WWK + G P N+V
Sbjct: 26 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE---SGEWWKARSLATRKEGYIPSNYVA 79
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 60.7 bits (148), Expect = 2e-13
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVT 82
+ Y AQ + EL +K+ + + L+ K WW+ R G P N+V
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLDD---SKTWWRVRNAANRTGYVPSNYVE 57
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 60.1 bits (146), Expect = 2e-13
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH 70
KE LY Y+ ++ E+T+K+ DI+ L++ +K WWK E++
Sbjct: 21 KELVLALYDYQEKSPREVTMKKGDILTLLNST--NKDWWKVEVN 62
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 59.4 bits (144), Expect = 8e-13
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVT 82
+ VL Y + + + + + +IS + GWWK GR P V
Sbjct: 18 DFLAVLSDYPSPDISPPIFRRGEKLRVISD---EGGWWKAISLSTGRESYIPGICVA 71
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 61.0 bits (147), Expect = 2e-12
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFV 81
+ + E + + + E +L ++ + + ++S+ ++ WW+ G GL P N+V
Sbjct: 114 KKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKT--NQDWWEARNALGTTGLVPANYV 171
Query: 82 TV 83
+
Sbjct: 172 QI 173
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 58.3 bits (141), Expect = 2e-12
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKG-ELHGRVGLFPDNFV 81
+ + Y AQ + EL +K+ + + L+ K WW+ R G P N+V
Sbjct: 31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD---SKTWWRVRNAANRTGYVPSNYV 83
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 57.5 bits (139), Expect = 4e-12
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH----GRVGLFPD 78
LK+ + YE E+ +E + ++ R+ GWW ++ G P
Sbjct: 6 SGNLKDVYVSIADYEGD-EETAGFQEGVSMEVLERN--PNGWWYCQILDGVKPFKGWVPS 62
Query: 79 NFVTVLPTTDET 90
N++ + +
Sbjct: 63 NYLEKKNSGPSS 74
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 56.6 bits (137), Expect = 1e-11
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 27 KERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVT 82
LY Y + + D+L+ ++ D +V++ WWK + G P N+V
Sbjct: 3 DIIVVALYDYVSWSPDDLSFQKGDQMVVLEE---SGEWWKARSLATRKEGYIPSNYVA 57
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 58.6 bits (141), Expect = 1e-11
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 23 QPVLKER-CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL---HGRVGLFPD 78
+ KER +Y ++ +L+L+ D+V + W++G L G+FP
Sbjct: 12 RKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGD---WYRGYLIKHKMLQGIFPK 68
Query: 79 NFVTVLPTTDETSIKSEKPSPAKS 102
+F+ + T E +E PA+
Sbjct: 69 SFIHIKEVTVEKRRNTENIIPAEI 92
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 59.0 bits (141), Expect = 4e-11
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL-HGRVGLFPDNFVTVL 84
R + LY YE Q DEL+ K D + + D ++GW KG L +G+VGL+P N+V +
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDELTKM-EDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 57.6 bits (138), Expect = 6e-11
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLPTT 87
+ L+ + +E++L K+ DI+ + + ++ WW E G+ G+ P +V
Sbjct: 138 YVRALFDFNGNDEEDLPFKKGDILRIRDKP--EEQWWNAEDSEGKRGMIPVPYVEKY--R 193
Query: 88 DETSIKSEKPSPAKSTTNRIRDSITKPS 115
++ S + ++ +P
Sbjct: 194 PASASVSALIGGNQEGSHPQPLGGPEPG 221
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 56.1 bits (135), Expect = 3e-10
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
+ L+ + ++ EL K D++ + DA ++ WW G + G FP +FV
Sbjct: 26 SDGSVVCAEALWDHVTMDDQELGFKAGDVIEV--MDATNREWWWGRVADGEGWFPASFVR 83
Query: 83 VLPTTDETSIKSEKPSPAKSTTNRIRDSITKPSD 116
+ DE + + + ++ +
Sbjct: 84 LRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQ 117
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 51.6 bits (123), Expect = 8e-10
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAP-------------DKGWWKG--ELHGRVGL 75
+ LY Y+ + E+++ L DI+ + + GW G E G G
Sbjct: 9 RALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGD 68
Query: 76 FPDNFVTVL 84
FP +V +
Sbjct: 69 FPGTYVEYI 77
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 54.0 bits (130), Expect = 1e-09
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVTVLPTTDETSI 92
+Y Y AQN+DEL + I+ ++ + D WWKGE+ G+VGLFP N+V + D +
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVL--NKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQ 65
Query: 93 KSEKPSPAKSTTNRIR 108
T R
Sbjct: 66 WCSDLHLLDMLTPTER 81
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 50.3 bits (120), Expect = 2e-09
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFV 81
+ P L L DIV L + + WW+G VG FP N V
Sbjct: 16 IPPPPGAFGPFLRLNPGDIVELTKAE-AEHNWWEGRNTATNEVGWFPCNRV 65
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 50.4 bits (120), Expect = 2e-09
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFV 81
+ P L L DIV L + + WW+G VG FP N V
Sbjct: 24 IPPPPGAFGGFLRLNPGDIVELTKAE-AEHNWWEGRNTATNEVGWFPCNRV 73
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 50.4 bits (120), Expect = 5e-09
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPD-KGWWKGELHG--------RVGLFPDN 79
L Y A + LT+ +V + S+ + +W G + G R+G FP +
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83
Query: 80 FVTVLPTTDETSIKSEKPSPAKST 103
V D+T +
Sbjct: 84 IVRE----DQTLKPGKVDVKTDKW 103
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural
genomics/proteomics initiative RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 92
Score = 46.9 bits (111), Expect = 7e-08
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAP--DKGWWKGELHGRVGLFPDNFVTVLPTTD 88
+ + A + +++L E D+V +I + P + W + G +F+
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR 80
Query: 89 ETSIKSEKPS 98
S S PS
Sbjct: 81 SHSDASSGPS 90
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 48.1 bits (115), Expect = 2e-07
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 29 RCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH-GRVGLFPDNFVT 82
C Y + E +L + D++ +++ D W+K + GR G+ P N+V
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVA-VTKDPNWYKAKNKVGREGIIPANYVQ 66
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus
norvegicus}
Length = 82
Score = 44.6 bits (105), Expect = 3e-07
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 28 ERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWK----GELHGRVGLFPDNFVTV 83
E VL + A + EL+++ V L+ R + GW + GL P + + +
Sbjct: 18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCI 77
Query: 84 LPT 86
+
Sbjct: 78 SHS 80
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 47.6 bits (112), Expect = 4e-07
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVLPTTD 88
+Y ++ + DE+ ++ DI+ + G+ KG GR GL+P V T
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNH--WDGYSKGVNRKLGRTGLYPSYKVREKIETV 503
Query: 89 ETSIKSE 95
+ E
Sbjct: 504 KYPTYPE 510
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 46.7 bits (111), Expect = 6e-07
Identities = 9/50 (18%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELHGRVGLFPDNFVT 82
LY + A ++ L++ + + + ++ + + W + + G P N++T
Sbjct: 49 LYDFVASGDNTLSITKGEKLRVLGYN-HNGEWCEAQTKNGQGWVPSNYIT 97
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 46.7 bits (111), Expect = 7e-07
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVLPTT 87
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V +
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLSTGQTGYIPSNYVAPSDSI 62
Query: 88 DETSI-----------KSEKPSPAKSTTNRIRDSITKPSD 116
+ + T +R+S T
Sbjct: 63 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 102
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 43.9 bits (104), Expect = 5e-06
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGELH--GRVGLFPDNFVTVLPTTDE- 89
LY YEA + ++L+ ++ D +V++ WWK + G P N+V + + +
Sbjct: 14 LYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKARSLATRKEGYIPSNYVARVDSLETE 70
Query: 90 -------TSIKSEK---PSPAKSTTNRIRDSITKPSDTTAALR 122
+ +E+ + IRDS T + ++R
Sbjct: 71 EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVR 113
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 41.6 bits (97), Expect = 2e-05
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 23 QPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGE--LHGRVGLFPDNF 80
P+ L+ YE ++ +L ++ + + ++ + WWK + G+ G P NF
Sbjct: 8 SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ---SGEWWKAQSLTTGQEGFIPFNF 64
Query: 81 VTVLPTTDETSIKSEKPSPAKST-----------TNRIRDSITKPSDTTAALR 122
V + + + S + + IR+S + + ++R
Sbjct: 65 VAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVR 117
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 41.0 bits (96), Expect = 6e-05
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 30 CKVLYPYEAQNEDELTLKEEDIVVLISRDAPDKGWWKGEL--HGRVGLFPDNFVTVLPTT 87
LY YE++ E +L+ K+ + + +++ D WW G+ G P N+V +
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGD--WWLAHSLSTGQTGYIPSNYVAPSDSI 145
Query: 88 DETSI-----------KSEKPSPAKSTTNRIRDSITKPSDTT 118
+ + T +R+S T
Sbjct: 146 QAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYC 187
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 38.7 bits (91), Expect = 3e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 33 LYPYEAQNEDELTLKEEDIVVLISRDAPD-KGWWKGELHGRVGLFPDNFVTVLP 85
L+ YE QN+DEL +KE D + +I R+ D WW L+ + G P N + + P
Sbjct: 176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 35.7 bits (81), Expect = 0.004
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 9 KNLLKKFVRGRRFRQPVLKERCKVLYPYEAQNEDELTLKEEDIVVLISRD---APDKGWW 65
++L+ F+ G R R + P + L+ + D+++L + GW
Sbjct: 559 RDLVVTFLEGLRKRSKYVVALQDNPNP-AGEESGFLSFAKGDLIILDHDTGEQVMNSGWA 617
Query: 66 KGELH--GRVGLFPDNFVTVLPTTDETSIKSEKPSPA 100
G + G FP + V V+PT P
Sbjct: 618 NGINERTKQRGDFPTDCVYVMPTV-------TLPPRE 647
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 31.8 bits (72), Expect = 0.066
Identities = 15/65 (23%), Positives = 23/65 (35%)
Query: 93 KSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEGESLDLTNKKKKKKKKKKKK 152
K + P+ + D A + L +K+ E + + KKKK
Sbjct: 42 KKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKK 101
Query: 153 KKKKN 157
KKKK
Sbjct: 102 KKKKK 106
Score = 31.4 bits (71), Expect = 0.11
Identities = 17/65 (26%), Positives = 25/65 (38%)
Query: 93 KSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEGESLDLTNKKKKKKKKKKKK 152
KS+ PS A + R +L+ + E + + KKKKKK
Sbjct: 44 KSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKK 103
Query: 153 KKKKN 157
KKK+
Sbjct: 104 KKKRG 108
Score = 29.5 bits (66), Expect = 0.43
Identities = 15/64 (23%), Positives = 21/64 (32%)
Query: 93 KSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEGESLDLTNKKKKKKKKKKKK 152
K +K + + D + S A + KE + D KKK
Sbjct: 41 KKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKK 100
Query: 153 KKKK 156
KKKK
Sbjct: 101 KKKK 104
Score = 29.5 bits (66), Expect = 0.43
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 93 KSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEGESLDLTNKKKKKKKKKKKK 152
+ + D + + + +A K D ++ D KKKKKKKKK+
Sbjct: 49 SAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Query: 153 KKK 155
K
Sbjct: 109 PKV 111
Score = 26.8 bits (59), Expect = 3.7
Identities = 8/65 (12%), Positives = 22/65 (33%)
Query: 93 KSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEGESLDLTNKKKKKKKKKKKK 152
+ +K + ++ + + + + L+ + ++ E + K
Sbjct: 39 RRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGK 98
Query: 153 KKKKN 157
KKKK
Sbjct: 99 KKKKK 103
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 30.9 bits (69), Expect = 0.14
Identities = 12/133 (9%), Positives = 33/133 (24%), Gaps = 30/133 (22%)
Query: 31 KVLYPYEAQNEDELTLKEEDIVVLISRDAP-------DKGWWKGELHGRVGLFPDNFVTV 83
+ + E L D+ ++ P G W GR
Sbjct: 8 RTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLR-------- 59
Query: 84 LPTTDETSIKSEKPSPAKSTTNRIRDSITKPSDTTAALRKSLDLTNKKEGESLDLTNKKK 143
+ I P+ +++ ++ + + + +
Sbjct: 60 --EQERGII----PNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEF---------WRL 104
Query: 144 KKKKKKKKKKKKK 156
+ ++ KK ++
Sbjct: 105 RGLRRGAKKTTQR 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.14
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 24/94 (25%)
Query: 44 LTLKEEDI--VVLISRDAPDKGWWKGE-LHGRVGLFPDNFVTVLPTTDETSIKSEKP-SP 99
LTL + V+L+ P ++ L + F +LP E ++P +P
Sbjct: 9 LTLSHGSLEHVLLV----PTASFFIASQLQ-------EQFNKILPEPTEGFAADDEPTTP 57
Query: 100 AKS-------TTNRIRDSITKPSDTTAALRKSLD 126
A+ ++ + S K L L
Sbjct: 58 AELVGKFLGYVSSLVEPS--KVGQFDQVLNLCLT 89
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 27.7 bits (62), Expect = 0.89
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 113 KPSDTTAALRKSLDLTNKKEGESLDLTNKKKKKKKKKKKKKKKK 156
+ S A+ + + + E ++ +K++ KK K
Sbjct: 64 ELSHRAKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSK 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.3
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 14/40 (35%)
Query: 8 EKNLLKKFVRGRRFRQPVLKERCKVLYPYEAQNEDELTLK 47
EK LKK L+ K Y + L +K
Sbjct: 18 EKQALKK-----------LQASLK---LYADDSAPALAIK 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 25.4 bits (56), Expect = 8.7
Identities = 3/20 (15%), Positives = 11/20 (55%)
Query: 138 LTNKKKKKKKKKKKKKKKKN 157
L ++K+ +++K ++
Sbjct: 179 LQPPRRKEVPRRRKNHRRSG 198
>3mqz_A Uncharacterized conserved protein DUF1054; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
HET: MSE; 1.30A {Leptospirillum rubarum}
Length = 215
Score = 25.3 bits (55), Expect = 9.2
Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 2/95 (2%)
Query: 59 APDKGWWKGELHGRVGLFPDNFVTVLPTTDETSIKSEKPSPAKSTTNRIRDSITKPSDTT 118
P+K +K H V + DE + + S + +
Sbjct: 87 GPEKRGYKSYAHSGVFIGGRGLSVRFILKDEAIEERKNLGRWMSRSGPAFEQW--KKKVG 144
Query: 119 AALRKSLDLTNKKEGESLDLTNKKKKKKKKKKKKK 153
+ + + ++ K
Sbjct: 145 DLRDFGPVHDDPMADPPKVEWDPRVFGERLGSLKS 179
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 25.2 bits (54), Expect = 9.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 123 KSLDLTNKKEGESLDLTNKKKKKKKKKKK 151
K D + + +LT K ++ K+
Sbjct: 238 KKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.129 0.359
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,305,126
Number of extensions: 130475
Number of successful extensions: 1837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1361
Number of HSP's successfully gapped: 335
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.1 bits)