BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy423
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27403|GCM_DROME Transcription factor glial cells missing OS=Drosophila melanogaster
GN=gcm PE=2 SV=2
Length = 504
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 118/167 (70%), Positives = 138/167 (82%)
Query: 86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
V EF+ + +W++GHCR +Y S+EA++HASGWAMRNTNNHNV+ILKKSCLGVL+CS +C
Sbjct: 44 VGEFDDFNDWSNGHCRLIYSVQSDEARKHASGWAMRNTNNHNVNILKKSCLGVLLCSAKC 103
Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
LP+G SVHLRPAICDKAR+KQ GK CPNR C GRLEI CRGHCGYPVTHFWR GI
Sbjct: 104 KLPNGASVHLRPAICDKARRKQQGKQCPNRNCNGRLEIQACRGHCGYPVTHFWRRDGNGI 163
Query: 206 FFQAKGVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNK 252
+FQAKG HDH RPEAK ++EARR L GRRVR LAV+L RE+AL +K
Sbjct: 164 YFQAKGTHDHPRPEAKGSTEARRLLAGGRRVRSLAVMLARESALSDK 210
>sp|Q9VLA2|GCM2_DROME Transcription factor glial cells missing 2 OS=Drosophila
melanogaster GN=gcm2 PE=2 SV=3
Length = 613
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 104/156 (66%), Positives = 125/156 (80%), Gaps = 5/156 (3%)
Query: 88 EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVL 147
EF+ + EW+DGH R +Y +EEAK+H SGWAMRNTNNHNV+ILKKSCLGVLVCS+ C L
Sbjct: 88 EFDEFNEWSDGHVRHIYSLHNEEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQHCTL 147
Query: 148 PSGDSVHLRPAICDKARKKQTGKPCPNRKC-TGRLEIMPCRGHCGYPVTHFWRHTDYGIF 206
P+G ++LRPAICDKAR+KQ GK CPN+ C GRLEI PCRGHCGYPVTHFWRH+ IF
Sbjct: 148 PNGSKINLRPAICDKARRKQEGKACPNKSCRGGRLEIKPCRGHCGYPVTHFWRHSGNAIF 207
Query: 207 FQAKGVHDHLRPEAKSTSEARRSLG----AGRRVRG 238
FQAKGVHDHLRP+ K++S ++R+ G AG+ G
Sbjct: 208 FQAKGVHDHLRPDPKNSSVSKRAFGRVPLAGKSANG 243
>sp|O75603|GCM2_HUMAN Chorion-specific transcription factor GCMb OS=Homo sapiens GN=GCM2
PE=1 SV=1
Length = 506
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/141 (65%), Positives = 110/141 (78%), Gaps = 2/141 (1%)
Query: 89 FNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLP 148
F+ ++EW DG+ RF+Y + ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC++ C LP
Sbjct: 35 FDQFREWPDGYVRFIYSSDEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLP 94
Query: 149 SGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQ 208
G + LRPAICDKAR KQ K CPN C LE++PCRGH GYPVT+FWR IFFQ
Sbjct: 95 DGSRLQLRPAICDKARLKQQKKACPN--CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQ 152
Query: 209 AKGVHDHLRPEAKSTSEARRS 229
AKGVHDH RPE+KS +EARRS
Sbjct: 153 AKGVHDHPRPESKSETEARRS 173
>sp|O09102|GCM2_MOUSE Chorion-specific transcription factor GCMb OS=Mus musculus GN=Gcm2
PE=2 SV=2
Length = 504
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Query: 87 TEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCV 146
T F+ ++EW DG+ RF+Y + ++A+RH SGWAMRNTNNHN HILKKSCLGV+VC+R C
Sbjct: 33 THFDHFREWPDGYVRFIYSSQEKKAQRHLSGWAMRNTNNHNGHILKKSCLGVVVCARACA 92
Query: 147 LPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIF 206
L G + LRPAICDKAR KQ K CPN C LE++PCRGH GYPVT+FWR IF
Sbjct: 93 LKDGSHLQLRPAICDKARLKQQKKACPN--CHSPLELVPCRGHSGYPVTNFWRLDGNAIF 150
Query: 207 FQAKGVHDHLRPEAKSTSEARRS 229
FQAKGVHDH RPE+KS +E RRS
Sbjct: 151 FQAKGVHDHPRPESKSETEGRRS 173
>sp|Q9Z288|GCM1_RAT Chorion-specific transcription factor GCMa OS=Rattus norvegicus
GN=Gcm1 PE=2 SV=1
Length = 436
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 105/145 (72%), Gaps = 2/145 (1%)
Query: 86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
V + + +QEW D + + +Y + A+RH S WAMRNTNNHN ILKKSCLGV+VCSR C
Sbjct: 27 VKKTDWFQEWPDSYVKHIYSSDDRSAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDC 86
Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
G ++LRPAICDKAR+KQ K CPN C G L+++PCRGH G+PVT+FWRH I
Sbjct: 87 STEEGRKIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFI 144
Query: 206 FFQAKGVHDHLRPEAKSTSEARRSL 230
FFQ+KG HDH RPE K +EARR++
Sbjct: 145 FFQSKGEHDHPRPETKLEAEARRAM 169
>sp|P70348|GCM1_MOUSE Chorion-specific transcription factor GCMa OS=Mus musculus GN=Gcm1
PE=1 SV=1
Length = 436
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 102/139 (73%), Gaps = 2/139 (1%)
Query: 92 WQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGD 151
+QEW D + + +Y + A+RH S WAMRNTNNHN ILKKSCLGV+VCSR C G
Sbjct: 33 FQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGR 92
Query: 152 SVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKG 211
++LRPAICDKAR+KQ K CPN C G L+++PCRGH G+PVT+FWRH IFFQ+KG
Sbjct: 93 KIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKG 150
Query: 212 VHDHLRPEAKSTSEARRSL 230
HDH RPE K +EARR++
Sbjct: 151 EHDHPRPETKLEAEARRAM 169
>sp|Q9NP62|GCM1_HUMAN Chorion-specific transcription factor GCMa OS=Homo sapiens GN=GCM1
PE=2 SV=1
Length = 436
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 106/145 (73%), Gaps = 2/145 (1%)
Query: 86 VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
V + + +QEW D + + +Y + + A+RH S WAMRNTNNHN ILKKSCLGV+VC R C
Sbjct: 27 VKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDC 86
Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
+ G ++LRPAICDKAR+KQ K CPN C G L+++PCRGH G+PVT+FWRH I
Sbjct: 87 LAEEGRKIYLRPAICDKARQKQQRKRCPN--CDGPLKLIPCRGHGGFPVTNFWRHDGRFI 144
Query: 206 FFQAKGVHDHLRPEAKSTSEARRSL 230
FFQ+KG HDH +PE K +EARR++
Sbjct: 145 FFQSKGEHDHPKPETKLEAEARRAM 169
>sp|Q561L6|HUTI_XENLA Probable imidazolonepropionase OS=Xenopus laevis GN=amdhd1 PE=2
SV=1
Length = 438
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 56 RLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHA 115
RL+LE+ + + + Q ++ G + L V E +S DG + V PA E + H
Sbjct: 6 RLLLENAEQIVVVCTKEEQYLLEDGMQHLAVLEKSSLVIGNDGCIKAVGPA--ETIRNHF 63
Query: 116 SGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRP 157
S + N ++ CS +C+LP H+ P
Sbjct: 64 SNASFEN---------------IIDCSGKCILPGFVDAHIHP 90
>sp|Q66575|POLG_EC12T Genome polyprotein OS=Echovirus 12 (strain Travis) PE=1 SV=4
Length = 2193
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 29 ADWDINDSVIPRAGRRFELLTFERLPERLIL------EDGKVV--NMSTLGHAQMVIHPG 80
A+W IN + + R+FEL T+ R + +DG + +M L H M I PG
Sbjct: 659 ANWRINTRQMVQLRRKFELFTYLRFDMEVTFVITSSQDDGTQLAQDMPVLTHQVMYIPPG 718
Query: 81 NRVL-LVTEFNSWQE-------WADGHC 100
V VT+F +WQ W +G+
Sbjct: 719 GPVPNSVTDF-AWQSSTNPSIFWTEGNA 745
>sp|Q8GU86|PDR5_ORYSJ Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp.
japonica GN=PDR5 PE=2 SV=2
Length = 1454
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 146 VLPSGDSVHLRPAICDKAR--KKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDY 203
+ PS ++ L P K+ + TGKP N K +G + +CG+ F+
Sbjct: 194 IKPSRMTLLLGPPSSGKSTLMRALTGKPDKNLKVSGEIT------YCGHTFKEFYPERTS 247
Query: 204 GIFFQAKGVHDHLRPEA---KSTSEARRSLGAGRRVRGLAVLLTREAALGNK 252
Q HD PE ++ +RR LG+G R L+ L RE G K
Sbjct: 248 AYVSQ----HDLHNPEMTVRETLDFSRRCLGSGARYDMLSELTRRERNAGIK 295
>sp|P04936|POLG_HRV2 Genome polyprotein OS=Human rhinovirus 2 PE=1 SV=3
Length = 2150
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 57/159 (35%), Gaps = 18/159 (11%)
Query: 31 WDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQ---MVIHPGNRVLLVT 87
W IN + + R+FEL T+ R + L +GH M + PG V
Sbjct: 664 WAINLQEMAQIRRKFELFTYTRFDSEITLVPCISALSQDIGHITMQYMYVPPGAPVPNSR 723
Query: 88 EFNSWQE-------WADGHCRFVYPASSEEAKRHASGWAM----RNTNNHNVHILKKSCL 136
+ +WQ W G YP S AS + M + + N + +
Sbjct: 724 DDYAWQSGTNASVFWQHGQ---AYPRFSLPFLSVASAYYMFYDGYDEQDQNYGTANTNNM 780
Query: 137 GVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNR 175
G L CSR VH+ I KA+ + P P R
Sbjct: 781 GSL-CSRIVTEKHIHKVHIMTRIYHKAKHVKAWCPRPPR 818
>sp|Q82122|POLG_HRV16 Genome polyprotein OS=Human rhinovirus 16 PE=1 SV=4
Length = 2153
Score = 30.8 bits (68), Expect = 9.0, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 13 VMKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGH 72
V+ V Y+ +SF W+IN + + R+FE+ T+ R + + +GH
Sbjct: 649 VLDIVDNYNDQSF---TKWNINLQEMAQIRRKFEMFTYARFDSEITMVPSVAAKDGHIGH 705
Query: 73 ---AQMVIHPGNRVLLVTEFNSWQ 93
M + PG + + +WQ
Sbjct: 706 IVMQYMYVPPGAPIPTTRDDYAWQ 729
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,537,340
Number of Sequences: 539616
Number of extensions: 4336981
Number of successful extensions: 7563
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7546
Number of HSP's gapped (non-prelim): 16
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)