Query psy423
Match_columns 255
No_of_seqs 45 out of 47
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 20:09:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1odh_A MGCM1; transcription fa 100.0 5E-100 2E-104 644.6 13.1 168 20-233 4-172 (174)
2 2ayd_A WRKY transcription fact 30.3 73 0.0025 23.6 4.5 36 184-220 38-76 (76)
3 4agy_A VP1 protein; picornavir 28.0 14 0.00048 31.0 0.3 65 27-97 28-96 (181)
4 4gb3_1 Coat protein 1; capsid 27.4 14 0.00048 33.2 0.2 69 27-98 86-162 (281)
5 1evh_A WH1 domain, protein (ME 23.9 36 0.0012 25.9 1.9 46 60-114 54-100 (112)
6 3flo_B DNA polymerase alpha ca 22.6 37 0.0013 28.7 1.9 37 133-182 78-115 (206)
7 1pxe_A Neural zinc finger tran 21.3 38 0.0013 24.8 1.5 22 159-180 7-28 (63)
8 2wlt_A L-asparaginase; hydrola 20.5 73 0.0025 28.0 3.4 23 77-99 160-184 (332)
9 1wj2_A Probable WRKY transcrip 19.3 80 0.0027 23.5 2.9 30 190-219 46-78 (78)
10 2coa_A Protein kinase C, D2 ty 16.6 59 0.002 26.1 1.8 14 196-209 27-41 (125)
No 1
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=100.00 E-value=4.5e-100 Score=644.62 Aligned_cols=168 Identities=54% Similarity=0.979 Sum_probs=154.8
Q ss_pred CCCcccCC-CCCccCCCCCcccccccchhhhhccchhhhhhcccccccccccccceeeecCCCceeeecccccccccCCC
Q psy423 20 YSPRSFRH-TADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADG 98 (255)
Q Consensus 20 ~~~~~~~~-~~~wdind~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~V~~~D~F~EWpDG 98 (255)
.++++.++ ..+|||||.++|.+ |.+||+|||||||
T Consensus 4 ~~~~~~~~~~~~wdiNd~~lp~~--------------------------------------------~~~~d~f~eWpdG 39 (174)
T 1odh_A 4 DDFDPEDKEILSWDINDVKLPQN--------------------------------------------VKTTDWFQEWPDS 39 (174)
T ss_dssp ----------CCCCSSCSSCCCC--------------------------------------------CCCCCCCCSSCCS
T ss_pred CCCCCcccccceeccCCcccCcc--------------------------------------------hhccchhhcCCCC
Confidence 34445555 58999999999997 3789999999999
Q ss_pred ceeEEecCCcHHHHhcccccccccCCCcccceeecccceEEEecCCcccCCCCeeeechhhhHHHHhhhcCCCCCCCCCC
Q psy423 99 HCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCT 178 (255)
Q Consensus 99 ~vr~iY~~~~~~ArrH~SGWAMRNTNNHN~~ILKKSCLGVlvCS~~C~lp~G~ki~LRPAICDKAR~KQqgK~CPN~~C~ 178 (255)
|||+||++++++||+|+||||||||||||++|||||||||||||++|+||+|.+|+||||||||||+|||+|.||| |+
T Consensus 40 ~vr~iY~~~~~~a~rh~SgWAmRnTnnHn~~ilkKsCLGVlvCs~~C~~p~g~~i~lRPAicdkAR~KQq~k~Cpn--C~ 117 (174)
T 1odh_A 40 YVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPN--CN 117 (174)
T ss_dssp SCEECCBTTCHHHHTTCCSSCEEEECCSCTTCEEEEECCEEEETTCCCCSSSCCCEECCCSSHHHHHHHHHSBCSS--SC
T ss_pred ceEEEecccccchhhcccceeEecCCCcchhhhhhccceEEEecCCcCCCCCCeeeechHHHHHHHHHhhcCCCCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cceeeeeccCCCCCccceEEEEeCCEEEEeecccCCCCCCCCcchHHHHHhhcCC
Q psy423 179 GRLEIMPCRGHCGYPVTHFWRHTDYGIFFQAKGVHDHLRPEAKSTSEARRSLGAG 233 (255)
Q Consensus 179 G~Lel~pCRGH~GYPVThFWRh~g~aIfFQaKG~HDHpRPe~K~~~EaRrs~~~~ 233 (255)
|+|+++||||||||||||||||+|++|||||||+|||||||+|+++||||++++.
T Consensus 118 g~L~~~~Crgh~GyPVThFWrh~~~~ifFqaKG~HDHpRPe~k~~~earr~~~~~ 172 (174)
T 1odh_A 118 GPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETKLEAEARRAMKKV 172 (174)
T ss_dssp CBEEEECCCTBTTBCCEEEEEECSSBEEEEEECCCCSCCCCCHHHHHHHHSCC--
T ss_pred cceeeEeccCcCCCcceEEEEEcCCEEEEecccccCCCCCCCcccHHHHHHhHhh
Confidence 9999999999999999999999999999999999999999999999999999864
No 2
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=30.26 E-value=73 Score=23.62 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=20.7
Q ss_pred eeccCCCCCccc-eEEEE--eCCEEEEeecccCCCCCCCC
Q psy423 184 MPCRGHCGYPVT-HFWRH--TDYGIFFQAKGVHDHLRPEA 220 (255)
Q Consensus 184 ~pCRGH~GYPVT-hFWRh--~g~aIfFQaKG~HDHpRPe~ 220 (255)
.-|. |.|=||+ +--|. |...+.--=+|.|.|+.|+.
T Consensus 38 YrCt-~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 38 YRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp EEEC-STTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred eEcC-CCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3444 3455555 34443 33344345579999999963
No 3
>4agy_A VP1 protein; picornavirus, enterovirus, HEV-A; 6.09A {Human coxsackievirus A7} PDB: 4agx_A
Probab=27.98 E-value=14 Score=31.01 Aligned_cols=65 Identities=25% Similarity=0.461 Sum_probs=43.3
Q ss_pred CCCCccCCCCCcccccccchhhhhccchhhhhhc----ccccccccccccceeeecCCCceeeecccccccccCC
Q psy423 27 HTADWDINDSVIPRAGRRFELLTFERLPERLILE----DGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWAD 97 (255)
Q Consensus 27 ~~~~wdind~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~~V~~~D~F~EWpD 97 (255)
....|+||-..+-.+.|.||+.|+-|..-.+.+- +| .+..+-|--|.+-||-.+- ..-|.|. |..
T Consensus 28 ~f~~W~I~~~~~~QlRrKlE~FTY~RFDlEvT~V~t~~~~---~~~~~~~QimyvPPGap~P--~~~~~~~-Wqs 96 (181)
T 4agy_A 28 GFAKWGIDIMGFVQMRRKLELMTYMRFSAEFTFVASTPEG---ETTNLILQYMYAPPGAPLP--TRRDSYE-WQT 96 (181)
T ss_dssp TEEEEEECSTTSHHHHHHHHHHCCCCCCEEEEEEEECSSS---CCCCCEEEEEEECSSSCCC--SCSSSST-TSC
T ss_pred ceEEEEEcHHHHHHHhhheeEEEEEeeeeEEEEEEecCCC---CCCcEEEEEEECCCCCCCC--CCccccc-ccc
Confidence 3578999999999999999999999987654432 11 1122334457788988753 2234443 554
No 4
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=27.40 E-value=14 Score=33.19 Aligned_cols=69 Identities=25% Similarity=0.464 Sum_probs=45.3
Q ss_pred CCCCccCCCCCcccccccchhhhhccchhhhhhc------cccccc--ccccccceeeecCCCceeeecccccccccCCC
Q psy423 27 HTADWDINDSVIPRAGRRFELLTFERLPERLILE------DGKVVN--MSTLGHAQMVIHPGNRVLLVTEFNSWQEWADG 98 (255)
Q Consensus 27 ~~~~wdind~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~r~~~V~~~D~F~EWpDG 98 (255)
...+|+||...+-.+.+.||+.|+-|..-.+.+- .+...+ +..+=|--|.+-||-.+- ...|.| +|--+
T Consensus 86 ~f~~W~I~~~~~vQlRrKlEmFTY~RFD~E~TfVits~~~~~~~~~~~~~~~~~Q~MyvPPG~p~P--~~~d~~-~Wqs~ 162 (281)
T 4gb3_1 86 RYAEWVITPRQAAQLRRKLEFFTYVRFDLELTFVITSTQQPSTTQNQDAQILTHQIMYVPPGGPVP--DKVDSY-VWQTS 162 (281)
T ss_dssp CEEEEECCSSSSSHHHHHHTTEEEEEEEEEEEEEEEEEECCCCCSSCCCCCCEEEEEEECTTSCCC--SSTTCG-GGGCS
T ss_pred ceeeeeechhHHHHHHHHhhhheeeecceEEEEEEecccCCccccCCCCCeeEEEEEecCCCCCCC--CCCCCC-cccCC
Confidence 4678999999999999999999999986544321 011111 111234557888998765 566766 66543
No 5
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=23.92 E-value=36 Score=25.85 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=30.3
Q ss_pred cccccccccccccceeeecCCCceeeecccccccccCCCceeEEec-CCcHHHHhc
Q psy423 60 EDGKVVNMSTLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYP-ASSEEAKRH 114 (255)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~r~~~V~~~D~F~EWpDG~vr~iY~-~~~~~ArrH 114 (255)
.|++||-=++| ..+|+.. ..-..|+.|.|+.|.+=-. ++++||+.=
T Consensus 54 ~~~~vv~~~~l-~~~~~y~--------~~~p~Fh~w~~~~~~~GLnF~se~eA~~F 100 (112)
T 1evh_A 54 QDHQVVINCAI-PKGLKYN--------QATQTFHQWRDARQVYGLNFGSKEDANVF 100 (112)
T ss_dssp TTCCEEEEEEE-CTTCCCB--------CCSSSEEEEECSSCEEEEEESSHHHHHHH
T ss_pred CCCcEEEeeEe-cCCceEE--------ecCccceeEecCCEEEEEecCCHHHHHHH
Confidence 47777766665 3334333 4567899999998755444 777787653
No 6
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=22.59 E-value=37 Score=28.74 Aligned_cols=37 Identities=32% Similarity=0.590 Sum_probs=24.2
Q ss_pred cccceEEEecC-CcccCCCCeeeechhhhHHHHhhhcCCCCCCCCCCccee
Q psy423 133 KSCLGVLVCSR-RCVLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLE 182 (255)
Q Consensus 133 KSCLGVlvCS~-~C~lp~G~ki~LRPAICDKAR~KQqgK~CPN~~C~G~Le 182 (255)
+==.|.++|.- .|..- -+.+.| .|+.|+++.|+|.|.
T Consensus 78 ~YY~gwlvCdD~~C~~r-TR~lsv------------~g~rC~~p~C~G~m~ 115 (206)
T 3flo_B 78 LYYAGWLQCDDSTCGIV-TRQVSV------------FGKRCLNDGCTGVMR 115 (206)
T ss_dssp HHHHCCEEESCTTTCCE-ESCCCS------------STTBCSSTTCCCBEE
T ss_pred HHhcCCcccCCcCCCcc-cceeec------------cCCCCCCCCCCeeEe
Confidence 33345589966 78652 233434 489999988888764
No 7
>1pxe_A Neural zinc finger transcription factor 1; CCHHC zinc binding domain, neural zinc finger factor-1, DNA binding domain, metal binding protein; NMR {Rattus norvegicus} SCOP: g.73.1.1
Probab=21.35 E-value=38 Score=24.84 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=11.0
Q ss_pred hhHHHHhhhcCCCCCCCCCCcc
Q psy423 159 ICDKARKKQTGKPCPNRKCTGR 180 (255)
Q Consensus 159 ICDKAR~KQqgK~CPN~~C~G~ 180 (255)
.-|-.|...+...||.+.|+|.
T Consensus 7 ~~~~~~~~~~~~~CPtpGC~G~ 28 (63)
T 1pxe_A 7 YYDPSRTEKRESKCPTPGCDGT 28 (63)
T ss_dssp ---------CCCCSCCSSCCCC
T ss_pred ccCccccccccccCCCCCcCcc
Confidence 3355565556677999999984
No 8
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=20.50 E-value=73 Score=28.01 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.2
Q ss_pred ecCCCceeeecc--cccccccCCCc
Q psy423 77 IHPGNRVLLVTE--FNSWQEWADGH 99 (255)
Q Consensus 77 ~~~~~r~~~V~~--~D~F~EWpDG~ 99 (255)
||.|+|+.++.. ||.|+-...|.
T Consensus 160 i~~a~~v~K~~t~~~~aF~S~~~gp 184 (332)
T 2wlt_A 160 IFSVREVVKTHTTHVSTFKALNSGA 184 (332)
T ss_dssp EEETTTC-CCSSSCTTCCCCTTTCC
T ss_pred EeeccceEEccCCCcccccCCCCCe
Confidence 899999999976 89999765554
No 9
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=19.27 E-value=80 Score=23.54 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=17.3
Q ss_pred CCCccce-EEEE--eCCEEEEeecccCCCCCCC
Q psy423 190 CGYPVTH-FWRH--TDYGIFFQAKGVHDHLRPE 219 (255)
Q Consensus 190 ~GYPVTh-FWRh--~g~aIfFQaKG~HDHpRPe 219 (255)
-|=||+- --|. |...+.---+|.|.|+.|.
T Consensus 46 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 46 PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 4555543 3342 2333334468999999984
No 10
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=16.58 E-value=59 Score=26.14 Aligned_cols=14 Identities=43% Similarity=0.861 Sum_probs=11.7
Q ss_pred eEEEEeCCEE-EEee
Q psy423 196 HFWRHTDYGI-FFQA 209 (255)
Q Consensus 196 hFWRh~g~aI-fFQa 209 (255)
||||.|.+.| +||.
T Consensus 27 HYWrLD~K~Itlf~~ 41 (125)
T 2coa_A 27 HYWRLDCKCITLFQN 41 (125)
T ss_dssp EEEEECSSEEEEESS
T ss_pred eeeEecCCeEEEEec
Confidence 8999999965 7775
Done!