RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy423
         (255 letters)



>gnl|CDD|112433 pfam03615, GCM, GCM motif protein. 
          Length = 143

 Score =  262 bits (672), Expect = 3e-90
 Identities = 100/143 (69%), Positives = 121/143 (84%)

Query: 88  EFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVL 147
           +++ + EW+DGH R +Y +  + A++H SGWAMRNTNNHNV+ILKKSCLGVLVCSR C L
Sbjct: 1   KYDDFNEWSDGHVRHIYSSEDDNARKHLSGWAMRNTNNHNVNILKKSCLGVLVCSRDCKL 60

Query: 148 PSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGIFF 207
           P+G  ++LRPAICDKAR+KQ GK CPNR C GRLE++PCRGHCGYPVTHFWRH    IFF
Sbjct: 61  PNGSKINLRPAICDKARRKQQGKQCPNRGCNGRLELIPCRGHCGYPVTHFWRHDGNAIFF 120

Query: 208 QAKGVHDHLRPEAKSTSEARRSL 230
           QAKGVHDH RPE+K++SEARR+L
Sbjct: 121 QAKGVHDHPRPESKTSSEARRAL 143


>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
           Provisional.
          Length = 268

 Score = 27.7 bits (62), Expect = 5.0
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 52  RLPER-----LILEDGKVVNMSTLGHAQMVIHPGNRVL 84
           RL ER     +++++G++V    +G       P  RVL
Sbjct: 213 RLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVL 250


>gnl|CDD|234830 PRK00766, PRK00766, hypothetical protein; Provisional.
          Length = 194

 Score = 27.3 bits (61), Expect = 5.6
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 18/62 (29%)

Query: 4   RIRRETGSPV------------MKSVLPYSPRSFRHTADWDINDSVIPRAGRRFELLTFE 51
            + RETG PV            ++S L        H +DW+    +I +AG+  EL+T  
Sbjct: 92  ELYRETGLPVIVVMRKKPDFEAIESALKK------HFSDWEERIKLIKKAGKIVELITRG 145

Query: 52  RL 53
            L
Sbjct: 146 PL 147


>gnl|CDD|216334 pfam01153, Glypican, Glypican. 
          Length = 559

 Score = 27.3 bits (61), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)

Query: 172 CPNRKCTGRLEIMPCRGHC 190
           CP+  C G  E+ PCRG+C
Sbjct: 250 CPH--CRGLSEVKPCRGYC 266


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,071,728
Number of extensions: 1194595
Number of successful extensions: 841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 7
Length of query: 255
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 160
Effective length of database: 6,723,972
Effective search space: 1075835520
Effective search space used: 1075835520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)