RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy423
         (255 letters)



>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 158

 Score =  259 bits (663), Expect = 2e-89
 Identities = 84/146 (57%), Positives = 104/146 (71%), Gaps = 2/146 (1%)

Query: 86  VTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRC 145
           V   + +QEW D + + +Y +    A+RH S WAMRNTNNHN  ILKKSCLGV+VCSR C
Sbjct: 14  VKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDC 73

Query: 146 VLPSGDSVHLRPAICDKARKKQTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDYGI 205
               G  ++LRPAICDKAR+KQ  K CPN  C G L+++PCRGH G+PVT+FWRH    I
Sbjct: 74  STEEGRKIYLRPAICDKARQKQQRKSCPN--CNGPLKLIPCRGHGGFPVTNFWRHDGRFI 131

Query: 206 FFQAKGVHDHLRPEAKSTSEARRSLG 231
           FFQ+KG HDH RPE K  +EARR++ 
Sbjct: 132 FFQSKGEHDHPRPETKLEAEARRAMK 157


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 31.7 bits (71), Expect = 0.086
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 6/36 (16%)

Query: 169 GKPCPNRKC-TGRLEIMPCRGHCGY-----PVTHFW 198
           G    N KC T +  +  C GH G+     PV H  
Sbjct: 58  GSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVG 93


>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 381

 Score = 31.4 bits (70), Expect = 0.10
 Identities = 18/157 (11%), Positives = 40/157 (25%), Gaps = 15/157 (9%)

Query: 50  FERLPERLILEDGKVVNMS---TLGHAQMVIHPGNRVLLVTEFNSWQEWADGHCRFVYPA 106
           F  L   +    G  +  S     G            L    ++S            +  
Sbjct: 73  FRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSE------PQAVDFLE 126

Query: 107 SSEEAKRHASGWAMRNTNNHNVHILKKSCLGVLVCSRRCVLPSGDSVHLRPAICDKARKK 166
            +EEA++  + W    T     ++L +  +          +   ++V+ +        KK
Sbjct: 127 CAEEARKKINSWVKTQTKGKIPNLLPEGSV-----DGDTRMVLVNAVYFKGKWKTPFEKK 181

Query: 167 QTGKPCPNRKCTGRLEIMPCRGHCGYPVTHFWRHTDY 203
                 P R  + +   +            +      
Sbjct: 182 LN-GLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKA 217


>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B
           14 (HRV-14) [TaxId: 12131]}
          Length = 273

 Score = 26.7 bits (59), Expect = 2.8
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 29  ADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVVNMSTLGHAQMVIHPGNRVLLVT 87
            DW IN S + +  ++ EL T+ R        D +   ++T        +  N V+   
Sbjct: 84  NDWKINLSSLVQLRKKLELFTYVRF-------DSEYTILATASQPDSANYSSNLVVQAM 135


>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase
          {Bacteriophage T7 [TaxId: 10760]}
          Length = 109

 Score = 25.4 bits (55), Expect = 4.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 56 RLILEDGKVVNMSTLGHAQM 75
           ++LE G++VN + +  A M
Sbjct: 29 EVLLESGRLVNATNISRALM 48


>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
           coxsackievirus A9 [TaxId: 12067]}
          Length = 284

 Score = 25.6 bits (56), Expect = 5.9
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 29  ADWDINDSVIPRAGRRFELLTFER--------LPERLILEDGKVVNMSTLGHAQMVIHPG 80
             W IN   + +  R+ E+ T+ R        +  R         +M  L H  M + PG
Sbjct: 91  VAWPINTKQMVQMRRKLEMFTYLRFDMEVTFVITSRQDPGTTLAQDMPVLTHQIMYVPPG 150

Query: 81  NRVLLVTEFNSWQEWADGHCRF 102
             +    +  +WQ   +    +
Sbjct: 151 GPIPAKVDDYAWQTSTNPSIFW 172


>d1dysa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola
           insolens, Cel6b [TaxId: 34413]}
          Length = 345

 Score = 25.3 bits (55), Expect = 8.3
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 9/45 (20%)

Query: 211 GVHDHLRPEAKSTSEARRSLGAGRRVRGLAVLLTREAALGNKCNY 255
           G  D L P A+  +   +  G   ++RG +          N  NY
Sbjct: 186 GWADKLEPTAQEVATILQKAGNNAKIRGFSS---------NVSNY 221


>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug
           {Escherichia coli [TaxId: 562]}
          Length = 165

 Score = 24.6 bits (53), Expect = 9.3
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 76  VIHPGNRVLLVTEFNSWQEWADGHCRFVYPASSEEAKRHASGWAMRNTNNHNVHILKKSC 135
           ++ PG RV+             G   F +PA+      + +G+  R         L    
Sbjct: 5   ILAPGLRVVFCGINPGLSSAGTGFP-FAHPANRFWKVIYQAGFTDRQLKPQEAQHLLDYR 63

Query: 136 LGVLVCSRRCVLPSGD 151
            GV     R  + + +
Sbjct: 64  CGVTKLVDRPTVQANE 79


>d1ev11_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
           echovirus 1 [TaxId: 46633]}
          Length = 281

 Score = 24.8 bits (54), Expect = 10.0
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 29  ADWDINDSVIPRAGRRFELLTFERLPERLILEDGKVV------------NMSTLGHAQMV 76
            +W I    + +  R+ E+ T+ R      +E   V+            N   L H  M 
Sbjct: 91  NNWVITTRRVAQLRRKLEMFTYLRFD----MEITVVITSSQDQSTSQNQNAPVLTHQIMY 146

Query: 77  IHPGNRVLLVTEFNSWQEWADGHCRFVY 104
           + PG  + +  +  SWQ   +    +  
Sbjct: 147 VPPGGPIPVSVDDYSWQTSTNPSIFWTE 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,757
Number of extensions: 47934
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 16
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.4 bits)