Query psy4231
Match_columns 247
No_of_seqs 156 out of 661
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:11:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0858|consensus 100.0 3.7E-66 8.1E-71 439.1 21.9 235 1-247 2-239 (239)
2 PF04511 DER1: Der1-like famil 100.0 3.3E-55 7.2E-60 371.7 20.3 191 11-204 1-197 (197)
3 COG5291 Predicted membrane pro 100.0 1.1E-44 2.5E-49 307.0 9.5 198 10-212 18-217 (313)
4 KOG2632|consensus 99.6 8E-15 1.7E-19 127.0 11.8 175 4-186 7-195 (258)
5 PRK10907 intramembrane serine 99.2 2.8E-10 6.1E-15 101.2 10.9 167 10-190 92-271 (276)
6 COG0705 Membrane associated se 98.9 9.6E-09 2.1E-13 88.7 11.7 169 11-186 16-208 (228)
7 PF01694 Rhomboid: Rhomboid fa 98.8 5.6E-09 1.2E-13 83.2 4.9 133 48-188 2-141 (145)
8 PTZ00101 rhomboid-1 protease; 98.8 6.1E-08 1.3E-12 86.3 10.9 96 10-113 51-156 (278)
9 KOG4463|consensus 98.2 4.5E-06 9.8E-11 72.7 6.6 187 8-212 8-220 (323)
10 KOG2890|consensus 97.6 0.00055 1.2E-08 61.1 9.7 175 8-191 21-221 (326)
11 KOG2289|consensus 96.9 0.00075 1.6E-08 61.1 3.1 132 45-193 112-258 (316)
12 PF08551 DUF1751: Eukaryotic i 96.3 0.0038 8.2E-08 47.2 3.1 55 51-112 7-61 (99)
13 KOG2290|consensus 67.2 2.3 4.9E-05 40.6 0.7 37 50-90 449-485 (652)
14 PF11169 DUF2956: Protein of u 40.3 20 0.00044 27.2 1.8 18 148-165 78-95 (103)
15 PRK15065 PTS system mannose-sp 30.6 95 0.0021 27.6 4.8 42 150-191 202-246 (262)
16 PF11992 DUF3488: Domain of un 23.8 5.4E+02 0.012 23.2 9.4 90 10-106 2-110 (325)
17 PF12841 YvrJ: YvrJ protein fa 22.1 83 0.0018 19.5 2.0 22 67-88 5-26 (38)
No 1
>KOG0858|consensus
Probab=100.00 E-value=3.7e-66 Score=439.05 Aligned_cols=235 Identities=38% Similarity=0.730 Sum_probs=214.7
Q ss_pred CccHHHHHhcCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHH
Q psy4231 1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLY 80 (247)
Q Consensus 1 m~~~~~~~~~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~ 80 (247)
|+++.+++.+||||||+|+++|+++++++++++++|.+++++|++|+||+|+||++|+++++| +.++++++|+|++|
T Consensus 2 ~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg---~~gf~fl~n~~Fly 78 (239)
T KOG0858|consen 2 NMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFG---PFGFDFLMNLYFLY 78 (239)
T ss_pred chhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheec---cccHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999999999999999999999999997 77999999999999
Q ss_pred HhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHH
Q psy4231 81 SYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLF 160 (247)
Q Consensus 81 ~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l 160 (247)
+||++||+++|++|++||+||++++++++.+.+.+.+.++++++++.+++|+|||+||+.+|+++|++++||+|+||+++
T Consensus 79 rY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll 158 (239)
T KOG0858|consen 79 RYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLL 158 (239)
T ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHH
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChHHHHhhcCCCCCcccCCCCCCCCCC-CCCCCCCCCC-
Q psy4231 161 ACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPA-EPTSAGGRSW- 238 (247)
Q Consensus 161 ~~~~l~~~~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~g~~w- 238 (247)
+++++.+++.+.|++||++||+|+|++|++|+..||++++|||+|+++++++. +++..+ +.+.+.|++|
T Consensus 159 ~fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~~---------~~~~~~~~~~~~~g~~~~ 229 (239)
T KOG0858|consen 159 GFSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFADS---------PPTSIRRARELGTGAPWG 229 (239)
T ss_pred HHHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCCC---------CCccccccccCCCCCCCC
Confidence 99999998889999999999999999999999999999999999999999872 111111 1122224899
Q ss_pred -CCCCCCCCC
Q psy4231 239 -GRGNVLGGS 247 (247)
Q Consensus 239 -G~g~rLG~~ 247 (247)
|+|.++|++
T Consensus 230 ~g~~~~~~~~ 239 (239)
T KOG0858|consen 230 EGVGMGLGSN 239 (239)
T ss_pred cccccCCCCC
Confidence 566677764
No 2
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=100.00 E-value=3.3e-55 Score=371.74 Aligned_cols=191 Identities=41% Similarity=0.798 Sum_probs=183.5
Q ss_pred CChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhccc
Q psy4231 11 QPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGL 90 (247)
Q Consensus 11 iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~ 90 (247)
||||||+++++++++++++++++++|.+++++|++|++++|+||++|+++++| +.++++++++|++|++|++||+++
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g---~~~~~~l~~~~~l~~~s~~LE~~~ 77 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFG---PFSLNFLFNLYFLYQYSSSLEEGH 77 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEc---CCCHHHHHHHHHHHHHhhHhccCC
Confidence 79999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHH-----hhhhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHHHHHHH
Q psy4231 91 FDGKPADYAFMLLFNWVCCVVIALL-----ADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLI 165 (247)
Q Consensus 91 f~~~~~df~~~ll~~~~~i~l~~~~-----~~~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l~~~~l 165 (247)
|+++++||+|+++++++++.+++.+ ++.+++++++..+++|+|||+||+.+|+++|++++|++|+||++++++++
T Consensus 78 f~~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l 157 (197)
T PF04511_consen 78 FQGRSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLL 157 (197)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHH
Confidence 9999999999999999999888774 35678999999999999999999999999999999999999999999999
Q ss_pred hcc-hhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChH
Q psy4231 166 LFG-GGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPA 204 (247)
Q Consensus 166 ~~~-~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~ 204 (247)
+++ +...|++||++||+|+|++|++|+.++|+|++|||+
T Consensus 158 ~~~~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~ 197 (197)
T PF04511_consen 158 FGGSSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ 197 (197)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence 998 789999999999999999999999999999999996
No 3
>COG5291 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-44 Score=307.00 Aligned_cols=198 Identities=28% Similarity=0.518 Sum_probs=185.8
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcc
Q psy4231 10 SQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKG 89 (247)
Q Consensus 10 ~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~ 89 (247)
.||||||++++++.++++++.+++++|.++++.+++++|+.|+||++|++++++ +..++.+|++|++|+||++||++
T Consensus 18 ~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~---~~~~d~~M~vyf~Y~yS~~LE~g 94 (313)
T COG5291 18 RIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFG---KPTLDMFMHVYFLYRYSRMLEEG 94 (313)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhc---CcchhHHHHHHHHHHHHHHHhcc
Confidence 399999999999999999999999999999999999999999999999999997 78899999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHHHHHHHhc-
Q psy4231 90 LFDGKPADYAFMLLFNWVCCVVIALLAD-IYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILF- 167 (247)
Q Consensus 90 ~f~~~~~df~~~ll~~~~~i~l~~~~~~-~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l~~~~l~~- 167 (247)
.|...-.||+||++++..+|..++.+.+ ...++++++.+++|+|+++||++++++||+|++++||+|+++++++++.+
T Consensus 95 ~f~~~lv~Y~~yl~~~~l~i~a~s~I~gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfsfl~~~ 174 (313)
T COG5291 95 CFNTSLVEYFWYLLVISLVIFAISNIYGGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRR 174 (313)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHHHHhcC
Confidence 9986678999999999999988887775 56899999999999999999999999999999999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChHHHHhhcCC
Q psy4231 168 GGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPN 212 (247)
Q Consensus 168 ~~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~~~~~l~~~ 212 (247)
+....+++|+++||...++.+|||.. |++.+.||.|.++++..
T Consensus 175 g~~i~~vlGf~~g~~~h~~g~I~~mi--~r~~~~t~~~~~~~~~~ 217 (313)
T COG5291 175 GISIDDVLGFVVGHLFHYFGDIYPMI--GRDILSTPCWVKKLFNE 217 (313)
T ss_pred Cccceeeeeeeeccccccccchhhhh--hcccCCCcccccccccC
Confidence 56789999999999999999999986 57889999999998765
No 4
>KOG2632|consensus
Probab=99.60 E-value=8e-15 Score=127.03 Aligned_cols=175 Identities=15% Similarity=0.246 Sum_probs=135.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhh
Q psy4231 4 LSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYS 83 (247)
Q Consensus 4 ~~~~~~~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~ 83 (247)
..+++-.+|+.|-..+..+.++.+.+.+..+. ...+.+...+++.|+||++|+.++| ..-.|+++||.-++..+
T Consensus 7 ~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H----~s~~hllfnmlaL~~~g 80 (258)
T KOG2632|consen 7 VGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVH----LSLPHLLFNMLALWPLG 80 (258)
T ss_pred CccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHh----ccHHHHHHHHHHHHhch
Confidence 45677889999999999999888888665444 4567777788899999999999999 47799999999999999
Q ss_pred hhhhcccCCCChhhHHHHHHH----HHHHHHHHHH-Hh--hhh-----hhHHHHHHHHHHHHHhhCCCCeEEEEEEeecc
Q psy4231 84 GLLEKGLFDGKPADYAFMLLF----NWVCCVVIAL-LA--DIY-----FLMNPMVLSVMYVWCQLNKDANVTFMFRTQFK 151 (247)
Q Consensus 84 ~~LE~~~f~~~~~df~~~ll~----~~~~i~l~~~-~~--~~~-----~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~ 151 (247)
.++|+.+ |.+.-++.+..+ .+++.+++.- +. +.. .--+...+++.-+-+-+.|....+++|.++||
T Consensus 81 ~~fE~~~--G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP 158 (258)
T KOG2632|consen 81 SQFERTH--GTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIP 158 (258)
T ss_pred hHHHhhc--cceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccccccc
Confidence 9999987 434444444332 2222233322 21 111 22366677777777888899999999999999
Q ss_pred cccHHHHHHHHH-HHhcc-hhhHHHHHHHHHHHHHHh
Q psy4231 152 AMYLPWVLFACN-LILFG-GGVMELIGILIGHLYFFL 186 (247)
Q Consensus 152 a~ylP~~~l~~~-~l~~~-~~~~~l~Gi~~GhlY~fl 186 (247)
+++.||++++.+ +++.+ |++.+++|+++|+.|-+.
T Consensus 159 ~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 159 IVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 999999998876 66665 699999999999999984
No 5
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.15 E-value=2.8e-10 Score=101.24 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=104.0
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCcccc--cceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhh
Q psy4231 10 SQPFFTRWWLALTIAFTIGGRFGLLRG--SDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLE 87 (247)
Q Consensus 10 ~iPpvTR~~~~~~~~~sll~~~~~~~p--~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE 87 (247)
+-.|+|-.++++|+++.++..++-... ..+.+ +.....++|+||++|+.|.|. .-+|+++|++.++..++.+|
T Consensus 92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~-~~~~~~~~q~WRl~T~~flH~----~~~Hl~fNml~l~~lG~~iE 166 (276)
T PRK10907 92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAW-PFDPSLKFELWRYFTHALLHF----SLLHILFNLLWWWYLGGAVE 166 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhc-cccccccCCcHHHHhHHHHhC----CHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999998876542221 11212 212335789999999999994 67999999999999999999
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHh-hhhhhH-HHHHHHH-HHHHHh--hCCCCeEEEEEEeecccccHHHHHH--
Q psy4231 88 KGLFDGKPADYAFMLLFNWVCCVVIALLA-DIYFLM-NPMVLSV-MYVWCQ--LNKDANVTFMFRTQFKAMYLPWVLF-- 160 (247)
Q Consensus 88 ~~~f~~~~~df~~~ll~~~~~i~l~~~~~-~~~~l~-~~l~~~l-~Y~ws~--~np~~~v~~~g~~~i~a~ylP~~~l-- 160 (247)
+.. .+..|+...+.++++..+....+ +.++.| ++.+.++ .|.|-+ ++|+..+ .+|..++.++.+
T Consensus 167 ~~~---G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~f~llwl 237 (276)
T PRK10907 167 KRL---GSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIAFALLWL 237 (276)
T ss_pred HHH---ChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHHHHHHHH
Confidence 875 35567665555555544444333 333332 4444443 466644 4454322 233333333322
Q ss_pred H--HHHHhcch--hhHHHHHHHHHHHHHHhhhcc
Q psy4231 161 A--CNLILFGG--GVMELIGILIGHLYFFLTFKY 190 (247)
Q Consensus 161 ~--~~~l~~~~--~~~~l~Gi~~GhlY~fl~~i~ 190 (247)
+ +.-+.+.+ -..|+.|.++|-+.-+++...
T Consensus 238 ~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~ 271 (276)
T PRK10907 238 VAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTRN 271 (276)
T ss_pred HHHHHHccCcccHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 11122222 379999999999988876543
No 6
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=98.94 E-value=9.6e-09 Score=88.66 Aligned_cols=169 Identities=20% Similarity=0.196 Sum_probs=122.8
Q ss_pred CChHHHHHHHHHHHHHHHHhhCcccccc--------eeeehHHHhhcc---cccccccceeecCCCCCccHHHHHHHHHH
Q psy4231 11 QPFFTRWWLALTIAFTIGGRFGLLRGSD--------LILIYDLFVNNF---HIWRPITALFYYPLSPANGFHFLMNCYFL 79 (247)
Q Consensus 11 iPpvTR~~~~~~~~~sll~~~~~~~p~~--------l~~~~~~v~~~~---q~WRliT~~f~~g~~~~~~~~~l~~l~~l 79 (247)
.|++|+..+..++.+.+........... ....+....... |+||++|+-|.| ..-.|+++|+..+
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH----~~~~Hll~N~~~l 91 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLH----AGFLHLLFNMLAL 91 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHH----hhHHHHHHHHHHH
Confidence 4899999999999999887543222111 122333333222 899999999999 4779999999999
Q ss_pred HHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhh----hhh-hHHHHHHHHHHHHHhhCCCCeEEEEEE-eecccc
Q psy4231 80 YSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLAD----IYF-LMNPMVLSVMYVWCQLNKDANVTFMFR-TQFKAM 153 (247)
Q Consensus 80 ~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~----~~~-l~~~l~~~l~Y~ws~~np~~~v~~~g~-~~i~a~ 153 (247)
+.++..+|+.. + +..|..+.+.++++..+....++ .+. -.++-++.++=.++...|..+...... ++.++.
T Consensus 92 ~~fg~~le~~~--G-~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~ 168 (228)
T COG0705 92 WVFGSNLERRL--G-TLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPAL 168 (228)
T ss_pred HHhhHHHHHHh--c-hhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHH
Confidence 99999999975 2 34477666666666555554443 133 448889999999999999988887654 566766
Q ss_pred cHHHHHHHHHHHhcc-h------hhHHHHHHHHHHHHHHh
Q psy4231 154 YLPWVLFACNLILFG-G------GVMELIGILIGHLYFFL 186 (247)
Q Consensus 154 ylP~~~l~~~~l~~~-~------~~~~l~Gi~~GhlY~fl 186 (247)
.+-.+.++.+++++. + ...|+.|++.|-+|..+
T Consensus 169 ~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~ 208 (228)
T COG0705 169 ILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAAL 208 (228)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777752 1 57999999999988865
No 7
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=98.80 E-value=5.6e-09 Score=83.25 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=81.5
Q ss_pred hcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhh--h-hh-hHH
Q psy4231 48 NNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLAD--I-YF-LMN 123 (247)
Q Consensus 48 ~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~--~-~~-l~~ 123 (247)
+++|+||++|+.+.| .+..|+++|++.++.++..+|+.. .+.++....+.++++..+....+. . +. -.+
T Consensus 2 ~~~~~wrl~T~~f~h----~~~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~S 74 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVH----ANFLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGAS 74 (145)
T ss_dssp GCC-TTHHHHGGG------SSHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-S-----SSH
T ss_pred CCCcchhhhHHHHHc----cCHHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhccccccccccccCCCc
Confidence 578999999999999 588999999999999999999976 245565555445444444443332 1 22 236
Q ss_pred HHHHHHHHHHHhhCCCCeEEEE---EEeecccccHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhh
Q psy4231 124 PMVLSVMYVWCQLNKDANVTFM---FRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTF 188 (247)
Q Consensus 124 ~l~~~l~Y~ws~~np~~~v~~~---g~~~i~a~ylP~~~l~~~~l~~~~~~~~l~Gi~~GhlY~fl~~ 188 (247)
+.+.+++-..+...|+.+.... ..+.+...++++.+.... ....+...|+.|+++|.+|.+.-.
T Consensus 75 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~ 141 (145)
T PF01694_consen 75 GAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLIL 141 (145)
T ss_dssp HHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555554432221 223344444444433222 222357889999999999887643
No 8
>PTZ00101 rhomboid-1 protease; Provisional
Probab=98.77 E-value=6.1e-08 Score=86.33 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=68.7
Q ss_pred cCChHHHHHHHHHHHHHHHHhh-C---ccccc--ce----eeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHH
Q psy4231 10 SQPFFTRWWLALTIAFTIGGRF-G---LLRGS--DL----ILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFL 79 (247)
Q Consensus 10 ~iPpvTR~~~~~~~~~sll~~~-~---~~~p~--~l----~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l 79 (247)
++|.+|..+++..+++.++... + ...|. .+ ..+++.+ +++|+||++|+.|.|+ ..+|+++|++++
T Consensus 51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~----~~~HLl~Nm~~l 125 (278)
T PTZ00101 51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHA----NIFHTFFNVFFQ 125 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHcc----CHHHHHHHHHHH
Confidence 4899999999999988876543 2 12232 11 1355555 5799999999999994 689999999999
Q ss_pred HHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy4231 80 YSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIA 113 (247)
Q Consensus 80 ~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~ 113 (247)
|..+..+|+.. .+..|....++++++-.+++
T Consensus 126 ~~~G~~lE~~~---G~~r~~ilYl~sGi~G~l~s 156 (278)
T PTZ00101 126 LRMGFTLEKNY---GIVKIIILYFLTGIYGNILS 156 (278)
T ss_pred HHHHHHHHHHH---ChHHHHHHHHHHHHHHHHHH
Confidence 99999999976 24456644444444444443
No 9
>KOG4463|consensus
Probab=98.17 E-value=4.5e-06 Score=72.74 Aligned_cols=187 Identities=18% Similarity=0.289 Sum_probs=108.3
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhh-cccccccccceeecCCCCCccHHHHHHHHHHHHhhhhh
Q psy4231 8 FNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVN-NFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLL 86 (247)
Q Consensus 8 ~~~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~-~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~L 86 (247)
+.+.| |||..++.+.+.++.....-.++. +.++++..+. ++|+||++-+-|.+ -+.-+.++.+|.+| +.+.+
T Consensus 8 ~~nmp-VTK~~~iT~~~~~vvagI~~~k~~-f~l~y~~~l~~y~qywrlL~~qF~~----~n~~e~~~~l~I~Y-~fR~~ 80 (323)
T KOG4463|consen 8 FHNMP-VTKAFVITSALFTVVAGIQGRKSK-FGLSYQDILEKYFQYWRLLMSQFAF----SNTPELMFGLYILY-YFRVF 80 (323)
T ss_pred ccccc-hHHHHHHHHHHHHHHHHhhhcccc-cccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHH-HHHHH
Confidence 34554 999999999988887655444443 4455565554 48999999999998 47778888888888 77999
Q ss_pred hcccCCCChhhHHHHHHHHHHHH----HHHHHHhh-----hhhh-HHHHHHHHHHHHHhhCCC-CeEEEEEEeecccc--
Q psy4231 87 EKGLFDGKPADYAFMLLFNWVCC----VVIALLAD-----IYFL-MNPMVLSVMYVWCQLNKD-ANVTFMFRTQFKAM-- 153 (247)
Q Consensus 87 E~~~f~~~~~df~~~ll~~~~~i----~l~~~~~~-----~~~l-~~~l~~~l~Y~ws~~np~-~~v~~~g~~~i~a~-- 153 (247)
|+...+.| |..++++..+.. .++.++.+ .-.+ ..+|+++..|-.--.-|- .-+..|+ +++..|
T Consensus 81 ERlLGShk---y~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~-~~f~dkni 156 (323)
T KOG4463|consen 81 ERLLGSHK---YSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFG-VNFSDKNI 156 (323)
T ss_pred HHHhcccc---ceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeec-ccccccce
Confidence 99653344 544444443332 22332221 1111 134566665444333342 2334554 455555
Q ss_pred -cHHHHHHHHHHHhc----c-------hhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChHHHHhhcCC
Q psy4231 154 -YLPWVLFACNLILF----G-------GGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPN 212 (247)
Q Consensus 154 -ylP~~~l~~~~l~~----~-------~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~~~~~l~~~ 212 (247)
.+|.+=++++.-.. . +....++|++.+|+|..= . -|..--++|.++-.++++
T Consensus 157 ~~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~-----~--agi~~~~~~~~~~~f~d~ 220 (323)
T KOG4463|consen 157 SFIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLN-----I--AGIRKAKFPEFVASFFDR 220 (323)
T ss_pred eeecccchhhhcCcccccccccceeecccccccchhhhhhHhhcc-----c--ccccccccHHHHHhhhcc
Confidence 33333333333221 1 135678999999999752 1 133334666666555544
No 10
>KOG2890|consensus
Probab=97.58 E-value=0.00055 Score=61.08 Aligned_cols=175 Identities=21% Similarity=0.203 Sum_probs=112.7
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhhC-----cccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHh
Q psy4231 8 FNSQPFFTRWWLALTIAFTIGGRFG-----LLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSY 82 (247)
Q Consensus 8 ~~~iPpvTR~~~~~~~~~sll~~~~-----~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~ 82 (247)
..+.-++-+.++.+++...+.+..+ ...|. +.+-|.+++ +.+|+++|+-|+- ..-++.+.++..+.-.
T Consensus 21 l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~-y~lvp~~~~--~~~WtliTs~fie----~~vw~V~~sv~~L~v~ 93 (326)
T KOG2890|consen 21 LLNLEVVVSAICVLTLFGYILSFGNFTILLATLPG-YQLVPNALF--FFPWTLITSGFIE----LNVWDVLVSVLTLSVG 93 (326)
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccc-cccCCcchh--hhhHHHHhcchhh----hhHHHHHHHHHheeec
Confidence 3344456667775555555544322 12232 234555555 5999999999997 5779999999999999
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHHHH---HHHHH----hh------hhhh-HHHHHHHHHHHHHhhCCCCeEEEEEEe
Q psy4231 83 SGLLEKGLFDGKPADYAFMLLFNWVCCV---VIALL----AD------IYFL-MNPMVLSVMYVWCQLNKDANVTFMFRT 148 (247)
Q Consensus 83 ~~~LE~~~f~~~~~df~~~ll~~~~~i~---l~~~~----~~------~~~l-~~~l~~~l~Y~ws~~np~~~v~~~g~~ 148 (247)
++.+|... |+.....++.+...+.-+ +.+.+ +. .++- ..+....++.+|-|.-|+..+.--=.-
T Consensus 94 G~~lEp~W--g~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~ 171 (326)
T KOG2890|consen 94 GKFLEPNW--GSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSG 171 (326)
T ss_pred ceeeccCC--CCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccch
Confidence 99999986 333333344333222211 11221 11 2222 378888999999999999987543333
Q ss_pred ecccccHHHHHHHHHHHhc-------chhhHHHHHHHHHHHHHHhhhccc
Q psy4231 149 QFKAMYLPWVLFACNLILF-------GGGVMELIGILIGHLYFFLTFKYP 191 (247)
Q Consensus 149 ~i~a~ylP~~~l~~~~l~~-------~~~~~~l~Gi~~GhlY~fl~~i~P 191 (247)
++.++-+|...++++++.. .++..-..|..++..|..+-.--|
T Consensus 172 r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~ 221 (326)
T KOG2890|consen 172 RFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHP 221 (326)
T ss_pred hhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence 4444559998877766553 345667789999999998766666
No 11
>KOG2289|consensus
Probab=96.88 E-value=0.00075 Score=61.13 Aligned_cols=132 Identities=21% Similarity=0.202 Sum_probs=79.0
Q ss_pred HHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhh-------
Q psy4231 45 LFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLAD------- 117 (247)
Q Consensus 45 ~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~------- 117 (247)
+..++.|.||++|+.+.| ..-+|+++|++..-..|-.||+.+ |-..-.+.|++ +++.-.+++.+++
T Consensus 112 ~~~~r~E~WRllTym~LH----aGi~HL~~N~~~ql~iGi~LE~~~--G~~RiglIYl~-gg~aGSlls~l~d~~~~sVG 184 (316)
T KOG2289|consen 112 KPVHRGELWRLLTYMWLH----AGIFHLLLNMLSQLFIGIPLEQVH--GFLRIGLIYLA-GGVAGSLLSSLFDPNSISVG 184 (316)
T ss_pred ChhhhchhHHHHHHHHHh----cCHHHHHHHHHHHHhccccHHhhc--CceEEeeehhh-hhhhhHHHHHHhccCCceec
Confidence 445678999999999999 578999999999999999999976 22222334443 3333333333321
Q ss_pred ----hhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHHHhhhc
Q psy4231 118 ----IYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFG----GGVMELIGILIGHLYFFLTFK 189 (247)
Q Consensus 118 ----~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l~~~~l~~~----~~~~~l~Gi~~GhlY~fl~~i 189 (247)
.+-+-.+....++--|........ +.-.-.+++++++.+|. .-..|+.|...|-.+-|+..+
T Consensus 185 ASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~ 254 (316)
T KOG2289|consen 185 ASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHI 254 (316)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhh
Confidence 112334555555556655433221 11222223345555553 234677788888777777666
Q ss_pred ccCC
Q psy4231 190 YPQE 193 (247)
Q Consensus 190 ~P~~ 193 (247)
-|+.
T Consensus 255 ~g~~ 258 (316)
T KOG2289|consen 255 GGQL 258 (316)
T ss_pred ccce
Confidence 6653
No 12
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=96.30 E-value=0.0038 Score=47.24 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=46.5
Q ss_pred cccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy4231 51 HIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVI 112 (247)
Q Consensus 51 q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~ 112 (247)
.+|+++|+.|+. .+.+.++++...+...++.+|+.- .+.+++.++++..++..++
T Consensus 7 ~pWtl~T~~fve----~~i~~~l~~~~~l~~~g~~lE~~W---Gs~E~lkFi~vv~~~tnl~ 61 (99)
T PF08551_consen 7 YPWTLFTAGFVE----TNIIGLLFSLLTLFYGGRYLEPIW---GSREFLKFILVVNVITNLL 61 (99)
T ss_pred ehHHHHHHHHHH----hHHHHHHHHHHHHHHhhHHHHHhc---ChHHHHHHHHHHHHHhHHH
Confidence 799999999999 688999999999999999999986 2778988887766555443
No 13
>KOG2290|consensus
Probab=67.23 E-value=2.3 Score=40.62 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=33.3
Q ss_pred ccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhccc
Q psy4231 50 FHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGL 90 (247)
Q Consensus 50 ~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~ 90 (247)
.|++||.||.|+| ..-+|++.++-|=+...+.||+-.
T Consensus 449 dQfYRL~~SLFlH----agviH~~vSi~FQm~vmrdlEkL~ 485 (652)
T KOG2290|consen 449 DQFYRLWLSLFLH----AGVIHLLVSICFQMTVMRDLEKLA 485 (652)
T ss_pred hHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4999999999999 578999999999999999999954
No 14
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=40.33 E-value=20 Score=27.16 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=14.9
Q ss_pred eecccccHHHHHHHHHHH
Q psy4231 148 TQFKAMYLPWVLFACNLI 165 (247)
Q Consensus 148 ~~i~a~ylP~~~l~~~~l 165 (247)
..-...+|||++|++|++
T Consensus 78 ~~~~~~~LPW~LL~lSW~ 95 (103)
T PF11169_consen 78 SQSRSSWLPWGLLVLSWI 95 (103)
T ss_pred ccccccchhHHHHHHHHH
Confidence 456677999999999984
No 15
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=30.63 E-value=95 Score=27.61 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=28.5
Q ss_pred cccccHHHHHHHHHHHh--cch-hhHHHHHHHHHHHHHHhhhccc
Q psy4231 150 FKAMYLPWVLFACNLIL--FGG-GVMELIGILIGHLYFFLTFKYP 191 (247)
Q Consensus 150 i~a~ylP~~~l~~~~l~--~~~-~~~~l~Gi~~GhlY~fl~~i~P 191 (247)
.|.++.||.++++-+.. +-+ ....++|++.+.+|++.++.+-
T Consensus 202 ~~k~~~~ff~lGFvl~ayl~l~~l~iAiig~~iA~i~~~~~~~~~ 246 (262)
T PRK15065 202 ATRELMPFFYLGFVLAAFTNLNLIALGVIGVVLALIYLQLSPKYG 246 (262)
T ss_pred hccchHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 45668899888775433 223 4677899999999877555443
No 16
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=23.81 E-value=5.4e+02 Score=23.20 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=47.3
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCccccccee-----eehHHHhhccccccccc--------------ceeecCCCCCccH
Q psy4231 10 SQPFFTRWWLALTIAFTIGGRFGLLRGSDLI-----LIYDLFVNNFHIWRPIT--------------ALFYYPLSPANGF 70 (247)
Q Consensus 10 ~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~-----~~~~~v~~~~q~WRliT--------------~~f~~g~~~~~~~ 70 (247)
++|--++.+++++.++.++...+-+++.... .-|..... .+-|++.. .+..++ ...+.
T Consensus 2 ~~~r~~~~~ll~~~~~~~l~~~~~lp~w~~~~~~~~~~~~~~~~-~~~~~~p~r~~~~~l~l~~~~~~~~~~~--~~~~~ 78 (325)
T PF11992_consen 2 QLPRRALLWLLLALALALLPLAPHLPLWVIVFFAAALLWRLLLW-RRRWRLPPRWLLNLLALLALALLFLQYG--SLFGL 78 (325)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH-hcccCCchHHHHHHHHHHHHHHHHHHHc--ccccH
Confidence 5677777777777777776665555542211 12222221 12222110 001111 24456
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCChhhHHHHHHHHH
Q psy4231 71 HFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNW 106 (247)
Q Consensus 71 ~~l~~l~~l~~~~~~LE~~~f~~~~~df~~~ll~~~ 106 (247)
+...++..+-.-.+.+|... ..|+...++++.
T Consensus 79 ~~~v~lL~~l~~lKlle~k~----~RD~~~l~~l~~ 110 (325)
T PF11992_consen 79 DAGVALLLLLLALKLLELKT----RRDYYQLLLLGL 110 (325)
T ss_pred HHHHHHHHHHHHHHHHhccc----cccHHHHHHHHH
Confidence 67777777777778899764 567766555443
No 17
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=22.13 E-value=83 Score=19.46 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.8
Q ss_pred CccHHHHHHHHHHHHhhhhhhc
Q psy4231 67 ANGFHFLMNCYFLYSYSGLLEK 88 (247)
Q Consensus 67 ~~~~~~l~~l~~l~~~~~~LE~ 88 (247)
+.++..+..+|.+.|.-+.||+
T Consensus 5 n~GFPi~va~yLL~R~E~kld~ 26 (38)
T PF12841_consen 5 NVGFPIAVAIYLLVRIEKKLDE 26 (38)
T ss_pred hcCcHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999987
Done!