RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4231
         (247 letters)



>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease,
          membrane protein; HET: PA6 PQE; 2.20A {Haemophilus
          influenzae} SCOP: f.51.1.1 PDB: 3odj_A
          Length = 196

 Score = 31.5 bits (72), Expect = 0.17
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 4  LSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIY-DLFVNNFHIWRPITALFYY 62
          + ++   Q   T    AL +   I  + G       ++ Y      +  +WR I+    +
Sbjct: 1  MENFLAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVH 60

Query: 63 PLSPANGFHFLMNCYFLYSYSGLLEKGL 90
               +  H L N  + + + G++E+  
Sbjct: 61 ----LSNLHILFNLSWFFIFGGMIERTF 84


>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
           {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
          Length = 583

 Score = 30.3 bits (69), Expect = 0.69
 Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)

Query: 229 EPTSAGGRS--WGRGNVLGGS 247
              +   ++     GN LGGS
Sbjct: 83  VELATNNQTALIRSGNGLGGS 103


>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
           BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
           c.3.1.2 d.16.1.1
          Length = 587

 Score = 27.9 bits (63), Expect = 3.7
 Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 3/21 (14%)

Query: 229 EPTSAGGRS--WGRGNVLGGS 247
            P     R+     G  LGGS
Sbjct: 88  VPL-INNRTNNIKAGKGLGGS 107


>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
           alpha/beta structure, rossman 6-hydroxylated FAD,
           oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
           {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
           PDB: 1naa_A*
          Length = 546

 Score = 27.2 bits (61), Expect = 6.0
 Identities = 8/58 (13%), Positives = 13/58 (22%), Gaps = 15/58 (25%)

Query: 194 MGGPALLSTP--AFMYKWFPNERTTVHGFGQVPRRPAEPTSAGGRS--WGRGNVLGGS 247
              P   S+    F          T           + P     +      G ++GG 
Sbjct: 50  YVAPWATSSGLTKFDIPGLFESLFTD----------SNPF-WWCKDITVFAGCLVGGG 96


>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
           linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
           HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
           3ljp_A*
          Length = 546

 Score = 27.1 bits (61), Expect = 6.4
 Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 2/21 (9%)

Query: 229 EPTSAGGRS--WGRGNVLGGS 247
           EP   G       R  V+GG 
Sbjct: 76  EPQENGNSFMRHARAKVMGGC 96


>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
           oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
          Length = 526

 Score = 26.7 bits (60), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 2/16 (12%)

Query: 234 GGRS--WGRGNVLGGS 247
            GR+  W RG ++GGS
Sbjct: 85  AGRAHHWARGRLIGGS 100


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 8.0
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 5/30 (16%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGR 30
            +D   W   + FF     A+T+ F IG R
Sbjct: 285 ETD--SW---ESFFVSVRKAITVLFFIGVR 309


>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein
           complex, photosynthesis, electron transfer,
           oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD
           LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP:
           f.23.12.1
          Length = 49

 Score = 24.2 bits (52), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 163 NLILFGGGVMELIGILIGHLYFFL 186
           NLIL GG  + +  + +G+  FF+
Sbjct: 16  NLILAGGAGLPITTLALGYGAFFV 39


>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
           cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
           {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
           3gdn_A*
          Length = 536

 Score = 26.4 bits (59), Expect = 10.0
 Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 3/23 (13%)

Query: 227 PAEPTSAGGRS--WGRGNVLGGS 247
           P E            RG VLGG+
Sbjct: 85  PVERF-VSEDGIDNVRGRVLGGT 106


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.147    0.506 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,022,825
Number of extensions: 231093
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 18
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.5 bits)