RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4231
         (247 letters)



>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 28.2 bits (62), Expect = 0.63
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 9/190 (4%)

Query: 7   WFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVN-NFHIWRPITALFYYPLS 65
           +   Q   T    AL +   I  + G       ++ Y  +   +  +WR I+    +   
Sbjct: 1   FLAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVH--- 57

Query: 66  PANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPM 125
             +  H L N  + + + G + +  F        +++       V   +    +F ++ +
Sbjct: 58  -LSNLHILFNLSWFFIF-GGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGV 115

Query: 126 VLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGV---MELIGILIGHL 182
           V +V+      +K  +  F     F  M L  +       LFG  +     + G+++G +
Sbjct: 116 VYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLI 175

Query: 183 YFFLTFKYPQ 192
           + F+  K  +
Sbjct: 176 WGFIDSKLRK 185


>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain
          {Escherichia coli [TaxId: 562]}
          Length = 327

 Score = 27.3 bits (60), Expect = 1.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 1  MSDLSDWFNSQPFFTRWWLA 20
          +  L ++ +  PFF  W LA
Sbjct: 38 IETLRNYIDWTPFFMTWSLA 57


>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex,
           transmembrane anchor {Chlamydomonas reinhardtii [TaxId:
           3055]}
          Length = 39

 Score = 24.7 bits (54), Expect = 2.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 163 NLILFGGGVMELIGILIGHLYFFL 186
           NLIL GG  + +  + +G+  FF+
Sbjct: 14  NLILAGGAGLPITTLALGYGAFFV 37


>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
           1085]}
          Length = 136

 Score = 26.3 bits (58), Expect = 2.5
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 154 YLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKY 190
             P  LF  N+      +   + + +G+       +Y
Sbjct: 83  AYPVALFDRNITDGKAMIASFLTLTMGNNQGMGDVEY 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.147    0.506 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,025,775
Number of extensions: 47836
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 17
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.0 bits)