Query psy4232
Match_columns 130
No_of_seqs 136 out of 415
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:12:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_T RPL24, 60S ribosomal pr 100.0 6E-62 2.1E-66 374.4 5.1 128 1-128 3-130 (158)
2 2zkr_u 60S ribosomal protein L 100.0 1.6E-61 5.4E-66 371.9 2.5 126 1-126 1-126 (157)
3 3iz5_Z 60S ribosomal protein L 100.0 2.5E-60 8.5E-65 366.6 -1.9 128 1-128 3-131 (162)
4 3izc_Z 60S ribosomal protein R 100.0 5.2E-60 1.8E-64 362.8 -3.3 128 1-128 1-128 (155)
5 1vq8_U 50S ribosomal protein L 100.0 2.2E-40 7.5E-45 223.3 2.6 65 1-65 1-65 (66)
6 3j21_V 50S ribosomal protein L 100.0 1.8E-36 6E-41 204.3 5.5 59 1-59 2-60 (66)
7 3jyw_S 60S ribosomal protein L 100.0 1E-30 3.4E-35 164.7 1.8 45 8-52 1-45 (45)
8 2hpu_A NOSL protein; alpha bet 95.5 0.0053 1.8E-07 46.9 2.2 41 3-43 18-61 (175)
9 1mty_D Methane monooxygenase h 93.8 0.039 1.3E-06 48.5 3.6 57 4-66 402-467 (512)
10 3u52_A Phenol hydroxylase comp 90.2 0.16 5.6E-06 44.5 3.0 56 4-61 397-461 (511)
11 2l8e_A Polyhomeotic-like prote 86.0 0.14 4.9E-06 31.9 -0.0 30 4-40 19-48 (49)
12 3ge3_A Toluene-4-monooxygenase 85.0 0.73 2.5E-05 40.4 3.9 54 5-60 396-457 (500)
13 2ds5_A CLPX, ATP-dependent CLP 79.9 0.68 2.3E-05 29.0 1.3 22 3-26 11-32 (51)
14 1zfo_A LAsp-1; LIM domain, zin 79.7 0.38 1.3E-05 26.7 0.1 24 3-29 3-26 (31)
15 1ovx_A ATP-dependent CLP prote 79.5 0.61 2.1E-05 30.9 1.0 22 3-26 18-39 (67)
16 2inc_A Toluene, O-xylene monoo 77.0 1.1 3.6E-05 39.1 2.1 54 5-60 395-456 (491)
17 1a7i_A QCRP2 (LIM1); LIM domai 70.5 3.6 0.00012 26.0 3.0 33 3-38 7-42 (81)
18 2ww6_A Fibritin, T4 fibritin; 68.8 2.7 9.1E-05 23.4 1.7 15 14-28 6-20 (27)
19 1x68_A FHL5 protein; four-and- 68.3 4.2 0.00014 25.4 2.9 27 3-30 5-32 (76)
20 2iyb_E Testin, TESS, TES; LIM 67.8 2.2 7.5E-05 26.1 1.4 35 4-40 3-42 (65)
21 2egq_A FHL1 protein; LIM domai 66.9 5.1 0.00017 24.9 3.1 28 3-30 15-43 (77)
22 2cu8_A Cysteine-rich protein 2 66.5 4.9 0.00017 25.0 2.9 25 3-30 9-33 (76)
23 3f6q_B LIM and senescent cell 62.9 6.8 0.00023 23.6 3.0 26 3-30 11-36 (72)
24 1wyh_A SLIM 2, skeletal muscle 60.9 5.5 0.00019 24.3 2.4 26 3-30 5-30 (72)
25 1x63_A Skeletal muscle LIM-pro 59.9 6.7 0.00023 24.6 2.7 26 3-30 15-40 (82)
26 1l8d_A DNA double-strand break 57.4 1.5 5.2E-05 29.8 -0.8 12 4-15 48-59 (112)
27 1x4k_A Skeletal muscle LIM-pro 57.1 9.2 0.00032 23.2 2.9 26 3-30 5-30 (72)
28 1iml_A CRIP, cysteine rich int 55.4 7.2 0.00025 24.2 2.3 23 5-30 2-24 (76)
29 2d8y_A Eplin protein; LIM doma 55.4 9.1 0.00031 24.7 2.8 34 3-39 15-51 (91)
30 2ntk_A IMP cyclohydrolase; alp 53.3 4.7 0.00016 32.2 1.3 29 10-38 18-48 (222)
31 2dj7_A Actin-binding LIM prote 52.9 7.7 0.00026 24.8 2.1 24 3-29 15-38 (80)
32 2das_A Zinc finger MYM-type pr 50.6 11 0.00039 24.5 2.6 38 5-44 22-59 (62)
33 1x61_A Thyroid receptor intera 50.2 8.1 0.00028 23.6 1.8 13 3-15 5-17 (72)
34 1nyp_A Pinch protein; LIM doma 49.9 8.3 0.00028 23.2 1.8 24 3-30 5-28 (66)
35 1x4l_A Skeletal muscle LIM-pro 49.1 7.6 0.00026 23.8 1.6 27 4-30 6-32 (72)
36 1avy_A Fibritin, gpwac M; bact 47.5 9 0.00031 25.8 1.8 18 12-29 48-65 (74)
37 1x64_A Alpha-actinin-2 associa 47.1 8.1 0.00028 24.8 1.5 24 3-30 25-48 (89)
38 1x62_A C-terminal LIM domain p 46.4 9.4 0.00032 24.0 1.7 25 2-30 14-38 (79)
39 2cup_A Skeletal muscle LIM-pro 45.6 16 0.00053 23.6 2.8 25 4-30 67-91 (101)
40 3o5v_A X-Pro dipeptidase; crea 43.9 14 0.00046 25.0 2.3 33 5-37 28-62 (132)
41 2cuq_A Four and A half LIM dom 43.4 11 0.00037 23.5 1.6 23 4-30 16-38 (80)
42 3ooo_A Proline dipeptidase; st 43.0 14 0.00049 24.8 2.3 33 5-37 28-62 (132)
43 3pn9_A Proline dipeptidase; st 42.4 12 0.00039 25.2 1.8 32 5-36 30-63 (138)
44 4ayb_P DNA-directed RNA polyme 42.2 7.7 0.00026 24.2 0.7 11 4-14 24-34 (48)
45 3tgv_A Heme-binding protein HU 40.9 13 0.00044 26.3 1.9 32 16-47 30-61 (148)
46 1gh9_A 8.3 kDa protein (gene M 40.5 6.7 0.00023 25.9 0.3 23 2-25 20-42 (71)
47 2d8x_A Protein pinch; LIM doma 40.0 13 0.00045 22.5 1.6 23 4-30 6-28 (70)
48 1g47_A Pinch protein; LIM doma 39.7 17 0.00056 22.3 2.1 26 3-30 11-36 (77)
49 2d8z_A Four and A half LIM dom 39.3 23 0.00079 21.3 2.7 24 3-30 5-28 (70)
50 2l4z_A DNA endonuclease RBBP8, 38.7 21 0.00073 24.6 2.7 35 3-40 61-98 (123)
51 2dlo_A Thyroid receptor-intera 38.5 15 0.00051 23.0 1.7 24 3-30 15-38 (81)
52 1wig_A KIAA1808 protein; LIM d 37.7 19 0.00065 22.3 2.1 29 5-38 33-61 (73)
53 3ga8_A HTH-type transcriptiona 37.3 17 0.00057 23.3 1.9 30 3-32 2-32 (78)
54 2co8_A NEDD9 interacting prote 36.9 13 0.00043 23.7 1.2 25 3-30 15-39 (82)
55 2wjy_A Regulator of nonsense t 36.5 15 0.00052 33.2 2.0 28 5-36 8-35 (800)
56 2xqn_T Testin, TESS; metal-bin 36.4 21 0.00073 24.0 2.4 14 4-17 4-17 (126)
57 2xzl_A ATP-dependent helicase 36.3 13 0.00044 33.7 1.5 27 6-36 14-40 (802)
58 6rxn_A Rubredoxin; electron tr 35.8 11 0.00037 22.9 0.7 18 1-18 2-19 (46)
59 1v6g_A Actin binding LIM prote 35.4 17 0.00059 22.6 1.7 23 4-30 16-38 (81)
60 2xjy_A Rhombotin-2; oncoprotei 35.0 29 0.00098 23.4 2.9 24 5-30 68-91 (131)
61 1vq8_Z 50S ribosomal protein L 34.7 14 0.00047 24.9 1.1 20 4-23 28-49 (83)
62 2cur_A Skeletal muscle LIM-pro 34.6 25 0.00085 21.1 2.2 11 4-14 6-16 (69)
63 1e8j_A Rubredoxin; iron-sulfur 33.8 21 0.00072 21.9 1.8 17 1-17 1-17 (52)
64 2ehe_A Four and A half LIM dom 33.7 12 0.0004 23.5 0.6 12 4-15 16-27 (82)
65 1nui_A DNA primase/helicase; z 33.0 22 0.00074 27.1 2.1 28 3-38 14-41 (255)
66 3mcb_B Transcription factor BT 33.0 18 0.00062 23.0 1.4 17 20-36 11-27 (58)
67 1x3h_A Leupaxin; paxillin fami 32.9 22 0.00074 22.0 1.8 23 4-30 16-38 (80)
68 1j2o_A FLIN2, fusion of rhombo 31.0 28 0.00097 23.3 2.3 25 3-30 3-27 (114)
69 4a17_Y RPL37A, 60S ribosomal p 30.5 19 0.00064 25.6 1.3 29 4-41 37-65 (103)
70 3lkx_A Transcription factor BT 30.0 22 0.00074 23.2 1.4 17 20-36 11-27 (66)
71 1d0q_A DNA primase; zinc-bindi 29.9 42 0.0014 22.5 3.0 28 4-37 38-65 (103)
72 3i7m_A XAA-Pro dipeptidase; st 29.1 31 0.0011 23.3 2.2 34 5-38 29-64 (140)
73 1b8t_A Protein (CRP1); LIM dom 28.1 25 0.00086 25.6 1.7 14 4-17 8-21 (192)
74 3j21_i 50S ribosomal protein L 27.3 27 0.00092 23.7 1.6 26 4-38 36-61 (83)
75 4f6r_C Stathmin-like domain R1 26.6 86 0.003 21.5 4.1 32 84-115 41-72 (87)
76 2v3b_B Rubredoxin 2, rubredoxi 26.5 25 0.00086 21.8 1.2 15 1-15 1-15 (55)
77 1rut_X Flinc4, fusion protein 26.2 39 0.0013 24.5 2.5 25 2-29 4-28 (188)
78 4rxn_A Rubredoxin; electron tr 26.1 26 0.00091 21.8 1.3 15 1-15 1-15 (54)
79 3iz5_m 60S ribosomal protein L 25.4 24 0.00081 24.5 1.0 28 4-40 37-64 (92)
80 3izc_m 60S ribosomal protein R 25.4 23 0.00079 24.6 1.0 28 4-40 37-64 (92)
81 2q9k_A Uncharacterized protein 24.1 38 0.0013 24.0 2.0 25 23-47 47-71 (151)
82 3db0_A LIN2891 protein; putati 24.0 29 0.001 22.9 1.3 28 20-48 36-64 (128)
83 2dk7_A Transcription elongatio 23.9 52 0.0018 21.9 2.5 25 15-39 18-43 (73)
84 2rgt_A Fusion of LIM/homeobox 23.6 60 0.002 23.0 3.0 25 4-30 66-90 (169)
85 1m3v_A FLIN4, fusion of the LI 23.3 44 0.0015 22.6 2.1 25 3-30 5-29 (122)
86 1lv3_A Hypothetical protein YA 22.8 25 0.00085 23.1 0.7 31 3-40 9-39 (68)
87 2dar_A PDZ and LIM domain prot 22.1 52 0.0018 20.9 2.2 8 21-28 66-73 (90)
88 2l3k_A Rhombotin-2, linker, LI 22.1 60 0.002 21.9 2.6 11 5-15 10-20 (123)
89 2dsm_A Hypothetical protein YQ 22.0 66 0.0023 21.3 2.7 24 8-33 24-47 (72)
90 3o9x_A Uncharacterized HTH-typ 20.9 44 0.0015 22.5 1.7 36 4-40 3-46 (133)
91 3f7e_A Pyridoxamine 5'-phospha 20.7 38 0.0013 22.5 1.3 27 21-47 36-62 (131)
92 3h0g_L DNA-directed RNA polyme 20.4 30 0.001 22.3 0.7 9 5-13 40-48 (63)
93 3jyw_9 60S ribosomal protein L 20.1 24 0.00082 23.4 0.2 21 4-32 27-47 (72)
No 1
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=100.00 E-value=6e-62 Score=374.40 Aligned_cols=128 Identities=30% Similarity=0.595 Sum_probs=59.7
Q ss_pred CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhccccchhh
Q psy4232 1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQR 80 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~rr~~K~~R 80 (130)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||++||++|+||+++|++++|++++++|||
T Consensus 3 mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~kkr~~r~vK~~R 82 (158)
T 4a17_T 3 VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQKKKKRNVTVAR 82 (158)
T ss_dssp CCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC--------------------
T ss_pred eEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHHHHHhcCCcccch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4232 81 AIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPPPP 128 (130)
Q Consensus 81 aivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~~~~kk~~~~ 128 (130)
+|||+||++|+++|||+||||+|||||||+++||++++++++++++++
T Consensus 83 ~ivg~sl~~I~~kR~qkpe~r~a~re~ai~~~Kekkka~~~~kka~~a 130 (158)
T 4a17_T 83 AIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRK 130 (158)
T ss_dssp ------------------------------------------------
T ss_pred hhhhhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988877654
No 2
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.6e-61 Score=371.89 Aligned_cols=126 Identities=66% Similarity=1.096 Sum_probs=53.0
Q ss_pred CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhccccchhh
Q psy4232 1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQR 80 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~rr~~K~~R 80 (130)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||++||++|+||+++|+.++|++++++|||
T Consensus 1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~KkR~r~~vK~~R 80 (157)
T 2zkr_u 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQR 80 (157)
T ss_dssp ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHHHHHHHHhcCccceeH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy4232 81 AIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPP 126 (130)
Q Consensus 81 aivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~~~~kk~~ 126 (130)
+|||+||++|+++|||+||||+|||||||+++||++++++++++++
T Consensus 81 ~ivg~sl~~I~~kR~qkpevr~a~r~~ai~~~Ke~kk~~~~~kk~~ 126 (157)
T 2zkr_u 81 AITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTA 126 (157)
T ss_dssp ----------------------------------------------
T ss_pred HHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999988887765
No 3
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=100.00 E-value=2.5e-60 Score=366.56 Aligned_cols=128 Identities=43% Similarity=0.771 Sum_probs=69.6
Q ss_pred CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhc-cccchh
Q psy4232 1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTR-RTHKFQ 79 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~r-r~~K~~ 79 (130)
|++++|+|||++||||||+|||++||+||+||||||++||++++|||+|.||++||++|+|++++|++.++++ .+++||
T Consensus 3 mk~e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~q 82 (162)
T 3iz5_Z 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYS 82 (162)
T ss_dssp SSCEECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHHHTCCGGGTSSSCSCCCCCCCCCCSSSSSSSCC-------
T ss_pred eEEEEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcccCcccchhHHHHHHHhccchhhHHHHHHHhcCCcccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999998855554 566999
Q ss_pred hhHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4232 80 RAIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPPPP 128 (130)
Q Consensus 80 Raivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~~~~kk~~~~ 128 (130)
|+|||+||++|+++|||+||||+|||||||+++||++++++++++++.+
T Consensus 83 Raivg~sL~~I~~kRnqkpevR~A~Re~air~~Kekkka~~a~kka~~a 131 (162)
T 3iz5_Z 83 RSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKA 131 (162)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999988876654
No 4
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=100.00 E-value=5.2e-60 Score=362.78 Aligned_cols=128 Identities=51% Similarity=0.826 Sum_probs=72.6
Q ss_pred CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchHHHHHHhhccccchhh
Q psy4232 1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQR 80 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~~~~kkr~rr~~K~~R 80 (130)
|++++|+|||++||||||+|||++||+||+|||+||++||++++|||+|.||++||++|+||+++|++++|++++++|||
T Consensus 1 Mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~kkR~~~~vK~~R 80 (155)
T 3izc_Z 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQR 80 (155)
T ss_dssp CCCEECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHHHTCCHHHHSSSCSCCCCCCCCCCCSCCCCCCC-------
T ss_pred CceeEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHHhccCcccchhHHHHHHHhCCchhhHHHHHHhcCCccchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4232 81 AIVGASINDILAKRNVKPEIRKAQREQAIKAAKEQKRAQKEAKKPPPP 128 (130)
Q Consensus 81 aivg~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~kk~~~~~kk~~~~ 128 (130)
+|||+||++|+++|||+||+|.++|++||+++||++++++++++++++
T Consensus 81 ~ivg~sl~~Ik~~r~~k~e~r~a~r~~aik~~Kekkka~~~~kk~~~a 128 (155)
T 3izc_Z 81 PITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKA 128 (155)
T ss_dssp ------------------------------------------------
T ss_pred HHHHhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999988876654
No 5
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=100.00 E-value=2.2e-40 Score=223.35 Aligned_cols=65 Identities=32% Similarity=0.620 Sum_probs=52.9
Q ss_pred CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHhcccchH
Q psy4232 1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEE 65 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~KK~~~~ 65 (130)
|++++|+|||++||||||+|||++||+||+|||+||+++|++++|||+|+||++||++|+|+++|
T Consensus 1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~ 65 (66)
T 1vq8_U 1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE 65 (66)
T ss_dssp ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999876
No 6
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-36 Score=204.28 Aligned_cols=59 Identities=39% Similarity=0.816 Sum_probs=57.4
Q ss_pred CceeecccCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhhHHHHHHh
Q psy4232 1 MKLGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQ 59 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT~~yRr~~ 59 (130)
|++++|+|||++||||||+|||++||+||+|||+||++||++++|||+|+||++||+..
T Consensus 2 ~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~ 60 (66)
T 3j21_V 2 ARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR 60 (66)
T ss_dssp CCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHH
T ss_pred CceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999864
No 7
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.96 E-value=1e-30 Score=164.69 Aligned_cols=45 Identities=56% Similarity=1.001 Sum_probs=44.7
Q ss_pred cCCCCccCCCcceEEeecCceEEEechhHHhhhhcccCCccchhh
Q psy4232 8 YSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWT 52 (130)
Q Consensus 8 Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~WT 52 (130)
|||++||||||+|||++||++|+|||+||+++|++++|||+|+||
T Consensus 1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT 45 (45)
T 3jyw_S 1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45 (45)
T ss_dssp CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence 899999999999999999999999999999999999999999998
No 8
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=95.54 E-value=0.0053 Score=46.93 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=20.5
Q ss_pred eeecccCCCCc--cCCC-cceEEeecCceEEEechhHHhhhhcc
Q psy4232 3 LGLCAYSGYKI--YPGH-GKTLVKVDGKSFTFINSKCESSFKMR 43 (130)
Q Consensus 3 ~~~C~Fsg~~I--yPG~-G~~~Vr~Dgkv~~F~ssKc~~~~~~k 43 (130)
...|.|||-.| |||. |.++..+.|++++||+-.|.-.|...
T Consensus 18 ~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~ 61 (175)
T 2hpu_A 18 ETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG 61 (175)
T ss_dssp -----------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred CceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence 46899999998 4676 66666655999999999998887643
No 9
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=93.85 E-value=0.039 Score=48.50 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=43.3
Q ss_pred eecccCCCCc----cCCCcceEE-eecCceEEEechhHHhhhhcccCCccc----hhhHHHHHHhcccchHH
Q psy4232 4 GLCAYSGYKI----YPGHGKTLV-KVDGKSFTFINSKCESSFKMRRNPRKV----TWTVLYRRKQKKGQEEE 66 (130)
Q Consensus 4 ~~C~Fsg~~I----yPG~G~~~V-r~Dgkv~~F~ssKc~~~~~~krnPrki----~WT~~yRr~~KK~~~~~ 66 (130)
.+|..||-++ .||....++ --+|+.|+|||.-|+..|. .||-+. .|+ | .++-++.+-
T Consensus 402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l~~~ 467 (512)
T 1mty_D 402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGRELSEV 467 (512)
T ss_dssp EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBHHHH
T ss_pred eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCHHHH
Confidence 4799999984 457766665 6799999999999999998 688886 555 3 666444333
No 10
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=90.19 E-value=0.16 Score=44.51 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=42.2
Q ss_pred eecccCCCCc---cCCCcc----eEEeecCceEEEechhHHhhhhcccCCccc--hhhHHHHHHhcc
Q psy4232 4 GLCAYSGYKI---YPGHGK----TLVKVDGKSFTFINSKCESSFKMRRNPRKV--TWTVLYRRKQKK 61 (130)
Q Consensus 4 ~~C~Fsg~~I---yPG~G~----~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki--~WT~~yRr~~KK 61 (130)
-+|..|..+| .||... ..+--+|+.++|||.-|+..|. .||-+. .|+..-|-+.+-
T Consensus 397 ~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~ 461 (511)
T 3u52_A 397 QLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK--HEPEKYIQAWLPVHQIYQGN 461 (511)
T ss_dssp CBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTC
T ss_pred CccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH--HCHHHHhcccChHHHHHccC
Confidence 3799999999 456433 3344699999999999999998 677765 577766666554
No 11
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=86.02 E-value=0.14 Score=31.93 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=23.4
Q ss_pred eecccCCCCccCCCcceEEeecCceEEEechhHHhhh
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSF 40 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~ 40 (130)
..|.+||..|+|..+ |+.=.|||..|+..|
T Consensus 19 ~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 19 LKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY 48 (49)
T ss_dssp EECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred CcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence 469999999999763 233459999998866
No 12
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=85.01 E-value=0.73 Score=40.45 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=38.3
Q ss_pred ecccCCCCcc--CCCc----ceEEeecCceEEEechhHHhhhhcccCCccch--hhHHHHHHhc
Q psy4232 5 LCAYSGYKIY--PGHG----KTLVKVDGKSFTFINSKCESSFKMRRNPRKVT--WTVLYRRKQK 60 (130)
Q Consensus 5 ~C~Fsg~~Iy--PG~G----~~~Vr~Dgkv~~F~ssKc~~~~~~krnPrki~--WT~~yRr~~K 60 (130)
+|..|..++- ||+. ...+--+|+.++|||.-|+..|. .||-+.. |+..-|-..+
T Consensus 396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g 457 (500)
T 3ge3_A 396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQ--QDPVQYQNHMNIVDRFLAG 457 (500)
T ss_dssp BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTT
T ss_pred cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHH--hChHHHhCCCCHHHHHHcc
Confidence 7999988875 4431 33344699999999999999998 6777663 6555444433
No 13
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=79.89 E-value=0.68 Score=28.96 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=13.0
Q ss_pred eeecccCCCCccCCCcceEEeecC
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDG 26 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dg 26 (130)
...|||||.. ...-..+|..+|
T Consensus 11 ~~~CSFCGk~--~~ev~~LIaGpg 32 (51)
T 2ds5_A 11 LLYCSFCGKS--QHEVRKLIAGPS 32 (51)
T ss_dssp CCBCTTTCCB--TTTSSCEEECSS
T ss_pred CcEecCCCCC--HHHhcccCCCCC
Confidence 3479999973 233344555454
No 14
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=79.70 E-value=0.38 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=17.5
Q ss_pred eeecccCCCCccCCCcceEEeecCceE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSF 29 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~ 29 (130)
.+.|..||..|||+--.+ .+|++|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~---~~g~~~ 26 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN---CLDKFW 26 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC---SSSSCC
T ss_pred CCcCCccCCEEecceeEE---ECCeEe
Confidence 468999999999994433 356654
No 15
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=79.51 E-value=0.61 Score=30.92 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=13.2
Q ss_pred eeecccCCCCccCCCcceEEeecC
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDG 26 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dg 26 (130)
...|||||.. ..--..+|..+|
T Consensus 18 ~~~CSFCGK~--e~eV~~LIaGpg 39 (67)
T 1ovx_A 18 LLYCSFCGKS--QHEVRKLIAGPS 39 (67)
T ss_dssp CCCCTTTCCC--TTTSSSEEECSS
T ss_pred CcEecCCCCC--HHHHcccCCCCC
Confidence 4579999973 233344555554
No 16
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=77.05 E-value=1.1 Score=39.14 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=39.7
Q ss_pred ecccCCCCcc--CCCcc---eEE-eecCceEEEechhHHhhhhcccCCcc--chhhHHHHHHhc
Q psy4232 5 LCAYSGYKIY--PGHGK---TLV-KVDGKSFTFINSKCESSFKMRRNPRK--VTWTVLYRRKQK 60 (130)
Q Consensus 5 ~C~Fsg~~Iy--PG~G~---~~V-r~Dgkv~~F~ssKc~~~~~~krnPrk--i~WT~~yRr~~K 60 (130)
+|..|..+|- ||.+. .++ --+|+.++|||.-|+..|. .||-+ -.|+..-|-.++
T Consensus 395 ~c~~cq~P~~~~~~~~~~~~~~~~~~~G~~y~fcs~~c~~~F~--~~Pery~~~~~~~~~~~~g 456 (491)
T 2inc_A 395 ICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQ--IDPERYKNHTNLVDRFLKG 456 (491)
T ss_dssp BCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHH--HSGGGTTTCCCHHHHHHTT
T ss_pred ccCCCCCccCcCCCCccccceeEEEECCEEEeecCHHHHHHHH--HCHHHHhcccchhhHHhcC
Confidence 6888887543 55554 443 6799999999999999998 67766 356666665666
No 17
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=70.50 E-value=3.6 Score=25.95 Aligned_cols=33 Identities=30% Similarity=0.620 Sum_probs=23.0
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE---EechhHHh
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT---FINSKCES 38 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~---F~ssKc~~ 38 (130)
...|+-|+..|+||. +|..+|++|+ |.=+.|..
T Consensus 7 ~~~C~~C~~~I~~~~---~~~a~~~~~H~~CF~C~~C~~ 42 (81)
T 1a7i_A 7 GNKCGACGRTVYHAE---EVQCDGRSFHRCCFLCMVCRK 42 (81)
T ss_dssp -CBCSSSCCBCSSTT---EEEETTEEEESSSEECSSSCC
T ss_pred CCcCcCcCccccCce---eEEeCCcccccccCccCCCCC
Confidence 357999999999887 4666788776 44444544
No 18
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=68.79 E-value=2.7 Score=23.39 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=12.9
Q ss_pred cCCCcceEEeecCce
Q psy4232 14 YPGHGKTLVKVDGKS 28 (130)
Q Consensus 14 yPG~G~~~Vr~Dgkv 28 (130)
-|--|..|||.||.-
T Consensus 6 AP~Dg~~Yvr~dg~W 20 (27)
T 2ww6_A 6 APRDAQAYVRKFGEW 20 (27)
T ss_dssp CCSSSCEEEEETTEE
T ss_pred CCcCcceeEEEcCeE
Confidence 477899999999974
No 19
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.25 E-value=4.2 Score=25.38 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=19.8
Q ss_pred eeecccCCCCccC-CCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYP-GHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyP-G~G~~~Vr~Dgkv~~ 30 (130)
...|.-|+.+|++ | ...+|...|+.|+
T Consensus 5 ~~~C~~C~~~I~~~g-~~~~~~a~~~~wH 32 (76)
T 1x68_A 5 SSGCVACSKPISGLT-GAKFICFQDSQWH 32 (76)
T ss_dssp CCCCTTTCCCCCTTT-TCCEEEETTEEEE
T ss_pred CCCCccCCCcccCCC-CceeEEECCcccC
Confidence 3579999999997 4 3345777777776
No 20
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=67.76 E-value=2.2 Score=26.10 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=24.3
Q ss_pred eecccCCCCccCCCcceEEeecCceEE-----EechhHHhhh
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT-----FINSKCESSF 40 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~-----F~ssKc~~~~ 40 (130)
..|..||.+|+|+- .+|.-.|+.++ |.=+.|...+
T Consensus 3 ~~C~~C~~~I~~~~--~~v~a~~~~wH~~~~CF~C~~C~~~L 42 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV--QRVTYNNFSWHASTECFLCSCCSKCL 42 (65)
T ss_dssp EECTTTSSEECTTS--CEEEETTEEEETTTTTSBCTTTCCBC
T ss_pred CCCcCCCCeeccCc--eEEEECCCccCCCCCCEECCCCCCcC
Confidence 46889999999862 25666788887 6666665443
No 21
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=66.92 E-value=5.1 Score=24.86 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=21.7
Q ss_pred eeecccCCCCccCC-CcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPG-HGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG-~G~~~Vr~Dgkv~~ 30 (130)
...|+-|+.+|+|+ .+..+|...|++|+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H 43 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWH 43 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEE
T ss_pred CccCcccCCcccCCCCCceeEEECcceeC
Confidence 35799999999973 35677888888775
No 22
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.47 E-value=4.9 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=19.0
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|.-|+..|+||. +|..+|++|+
T Consensus 9 ~~~C~~C~~~I~~~~---~v~a~~~~~H 33 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE---KVSSLGKDWH 33 (76)
T ss_dssp CCBCTTTCCBCCTTT---EEEETTEEEE
T ss_pred CCCCcCCCCEeECCe---EEEECCeEee
Confidence 357999999999876 4556777776
No 23
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=62.86 E-value=6.8 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=19.4
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|..|+..|+|+. ..|..+|++++
T Consensus 11 ~~~C~~C~~~i~~~e--~~~~~~~~~~H 36 (72)
T 3f6q_B 11 SATCERCKGGFAPAE--KIVNSNGELYH 36 (72)
T ss_dssp TCBCTTTCCBCCTTC--EEEEETTEEEE
T ss_pred CccchhcCccccCCc--eEEEeCcCeeC
Confidence 357999999999875 34556777765
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.89 E-value=5.5 Score=24.29 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=18.2
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|..|+.+|+|+. .+|..+|++|+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 30 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWH 30 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEE
T ss_pred CCCCccCCCccccCc--cEEEECccccC
Confidence 457899999999852 35566666665
No 25
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.93 E-value=6.7 Score=24.55 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=18.7
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|..|+..|+|+. ++|...|++|+
T Consensus 15 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 40 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD--QNVEYKGTVWH 40 (82)
T ss_dssp SCBCSSSCCBCCSSS--CEEECSSCEEE
T ss_pred CCcCccCCcccccCc--eEEEECccccc
Confidence 357999999999863 45666677665
No 26
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.44 E-value=1.5 Score=29.81 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=10.8
Q ss_pred eecccCCCCccC
Q psy4232 4 GLCAYSGYKIYP 15 (130)
Q Consensus 4 ~~C~Fsg~~IyP 15 (130)
+.|.+||.+|.|
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 579999999997
No 27
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.11 E-value=9.2 Score=23.21 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=17.0
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|+.|+..|+|+. .+|..+|++|+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 30 (72)
T 1x4k_A 5 SSGCQECKKTIMPGT--RKMEYKGSSWH 30 (72)
T ss_dssp CCCBSSSCCCCCSSS--CEEEETTEEEE
T ss_pred CCCCccCCCcccCCc--eEEEECcCeec
Confidence 357899999999752 23445566554
No 28
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=55.44 E-value=7.2 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=14.7
Q ss_pred ecccCCCCccCCCcceEEeecCceEE
Q psy4232 5 LCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 5 ~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
.|.-|+..|+||. +|...|++|+
T Consensus 2 ~C~~C~~~I~~~~---~v~a~~~~~H 24 (76)
T 1iml_A 2 KCPKCDKEVYFAE---RVTSLGKDWH 24 (76)
T ss_dssp BCTTTSSBCCGGG---EEEETTEEEE
T ss_pred cCCCCCCEEECce---EEEECCcccc
Confidence 4777888887764 3455566554
No 29
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.40 E-value=9.1 Score=24.68 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=24.6
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE---EechhHHhh
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT---FINSKCESS 39 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~---F~ssKc~~~ 39 (130)
...|..|+..|+++. +|..+|++|+ |.=..|...
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 15 RETCVECQKTVYPME---RLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SCBCTTTCCBCCTTS---EEECSSSEEETTTCBCTTTCCB
T ss_pred CCcCccCCCccCCce---eEEECCCEECCCCCeeCCCCCC
Confidence 357999999999875 4678888876 544556443
No 30
>2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} SCOP: d.153.2.1 PDB: 2ntl_A* 2ntm_A 1kuu_A
Probab=53.32 E-value=4.7 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCCccCCCcceEEee-cCc-eEEEechhHHh
Q psy4232 10 GYKIYPGHGKTLVKV-DGK-SFTFINSKCES 38 (130)
Q Consensus 10 g~~IyPG~G~~~Vr~-Dgk-v~~F~ssKc~~ 38 (130)
+...|||+|.+.=+. ||+ +.||+++.++-
T Consensus 18 ~~n~YpGRgIvvG~t~~G~~vaY~I~sRSfp 48 (222)
T 2ntk_A 18 GSHMYLGRILAVGRNSNGSFVAYRVSSRSFP 48 (222)
T ss_dssp TTCCCCCSEEEEEEETTEEEEEEEEECSSCC
T ss_pred hcCCCCCCeEEEeeCCCCCEEEEEEecCCCC
Confidence 357899999999999 998 66888887654
No 31
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.90 E-value=7.7 Score=24.75 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=16.7
Q ss_pred eeecccCCCCccCCCcceEEeecCceE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSF 29 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~ 29 (130)
...|.-|+..|++|. +|...|+.|
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~w 38 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ---SLLALDKQW 38 (80)
T ss_dssp CSCCTTTCCCCSSSC---CEEETTEEE
T ss_pred CCCCcCcCCeeCCCe---EEEECCccc
Confidence 357999999999875 345556554
No 32
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=50.62 E-value=11 Score=24.53 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=32.8
Q ss_pred ecccCCCCccCCCcceEEeecCceEEEechhHHhhhhccc
Q psy4232 5 LCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRR 44 (130)
Q Consensus 5 ~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~~kr 44 (130)
.|+-|-..+.- |..-+++.|.+-.|||.-|..-|..+.
T Consensus 22 ~C~~CKk~lqK--GQtAyqrkGs~~LFCS~~CL~~fs~~~ 59 (62)
T 2das_A 22 TCANCKKPLQK--GQTAYQRKGSAHLFCSTTCLSSFSSGP 59 (62)
T ss_dssp BCTTTCCBCCT--TSCCEECTTCCCEESSHHHHHHHCCCS
T ss_pred Chhhccchhhc--CceeeeecCchhheechHHHcccCCCC
Confidence 58888888876 889999999999999999999887653
No 33
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.20 E-value=8.1 Score=23.56 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=9.7
Q ss_pred eeecccCCCCccC
Q psy4232 3 LGLCAYSGYKIYP 15 (130)
Q Consensus 3 ~~~C~Fsg~~IyP 15 (130)
...|..|+.+|+|
T Consensus 5 ~~~C~~C~~~I~~ 17 (72)
T 1x61_A 5 SSGCGGCGEDVVG 17 (72)
T ss_dssp CCCCSSSCSCCCS
T ss_pred CCCCccCCCccCC
Confidence 3568888888887
No 34
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=49.94 E-value=8.3 Score=23.17 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=15.7
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|+.|+..|+ |. +|...|++++
T Consensus 5 ~~~C~~C~~~I~-~~---~~~a~~~~~H 28 (66)
T 1nyp_A 5 VPICGACRRPIE-GR---VVNAMGKQWH 28 (66)
T ss_dssp CCEETTTTEECC-SC---EECCTTSBEE
T ss_pred CCCCcccCCEec-ce---EEEECccccc
Confidence 456888888887 32 5666666654
No 35
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.09 E-value=7.6 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=16.1
Q ss_pred eecccCCCCccCCCcceEEeecCceEE
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
..|.-|+.+|++.-+..+|...|+.|+
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH 32 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWH 32 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEEC
T ss_pred CCCcCCCccccCCCCcceEEECCcccC
Confidence 568888888886223344555555554
No 36
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=47.53 E-value=9 Score=25.75 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=14.5
Q ss_pred CccCCCcceEEeecCceE
Q psy4232 12 KIYPGHGKTLVKVDGKSF 29 (130)
Q Consensus 12 ~IyPG~G~~~Vr~Dgkv~ 29 (130)
+.-|--|..|||.||--.
T Consensus 48 p~AP~DG~~YVrkDgaWV 65 (74)
T 1avy_A 48 PEAPRDGQAYVRKDGEWV 65 (74)
T ss_dssp CCCCCSSCCEEEETTEEE
T ss_pred CCCCCCCceeEEecCeeE
Confidence 356888999999999743
No 37
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.06 E-value=8.1 Score=24.83 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=16.2
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|.-|+..|++ .+|...|++|+
T Consensus 25 ~~~C~~C~~~I~~----~~~~a~~~~~H 48 (89)
T 1x64_A 25 MPLCDKCGSGIVG----AVVKARDKYRH 48 (89)
T ss_dssp CCBCTTTCCBCCS----CCEESSSCEEC
T ss_pred CCCcccCCCEecc----cEEEECCceEC
Confidence 3568888888884 45666666654
No 38
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.39 E-value=9.4 Score=23.95 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.9
Q ss_pred ceeecccCCCCccCCCcceEEeecCceEE
Q psy4232 2 KLGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 2 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
....|.-|+..|++ .+|...|++|+
T Consensus 14 ~~~~C~~C~~~I~~----~~~~a~~~~~H 38 (79)
T 1x62_A 14 KLPMCDKCGTGIVG----VFVKLRDRHRH 38 (79)
T ss_dssp CCCCCSSSCCCCCS----SCEECSSCEEC
T ss_pred CCCccccCCCCccC----cEEEECcceeC
Confidence 35689999999994 26777777775
No 39
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=45.55 E-value=16 Score=23.64 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.2
Q ss_pred eecccCCCCccCCCcceEEeecCceEE
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
..|..|+..|.||. .+|...|.+|+
T Consensus 67 ~~C~~C~~~I~~~~--~~~~a~~~~~H 91 (101)
T 2cup_A 67 PKCKGCFKAIVAGD--QNVEYKGTVWH 91 (101)
T ss_dssp CBCSSSCCBCCSSS--CEEESSSCEEE
T ss_pred CccccCCCccccCC--eEEEeCCcchH
Confidence 46899999999863 45666677664
No 40
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=43.92 E-value=14 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=25.6
Q ss_pred ecccCCCCccCC--CcceEEeecCceEEEechhHH
Q psy4232 5 LCAYSGYKIYPG--HGKTLVKVDGKSFTFINSKCE 37 (130)
Q Consensus 5 ~C~Fsg~~IyPG--~G~~~Vr~Dgkv~~F~ssKc~ 37 (130)
+.+|||+...|| .+.++|..||..++|+.+--.
T Consensus 28 i~YltGf~~~~~er~~~l~v~~~g~~~l~~~~~y~ 62 (132)
T 3o5v_A 28 INYLTGFFCDPHERQLFLFVYHDLAPVLFVPALEV 62 (132)
T ss_dssp HHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGH
T ss_pred hhHhhCCCCCCccceEEEEEeCCCCEEEEeehhhh
Confidence 457888887665 357899999999999987653
No 41
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.37 E-value=11 Score=23.46 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=15.7
Q ss_pred eecccCCCCccCCCcceEEeecCceEE
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
..|..|+..|++. +|...|+.|+
T Consensus 16 ~~C~~C~~~I~~~----~v~a~~~~~H 38 (80)
T 2cuq_A 16 PRCARCSKTLTQG----GVTYRDQPWH 38 (80)
T ss_dssp CCCTTTCCCCCSC----CEESSSSEEC
T ss_pred CcCCCCCCEecCc----EEEECCchhh
Confidence 4688888888763 4666666654
No 42
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=43.01 E-value=14 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=25.2
Q ss_pred ecccCCCCccCC--CcceEEeecCceEEEechhHH
Q psy4232 5 LCAYSGYKIYPG--HGKTLVKVDGKSFTFINSKCE 37 (130)
Q Consensus 5 ~C~Fsg~~IyPG--~G~~~Vr~Dgkv~~F~ssKc~ 37 (130)
+.+|||+.-.|| .+.++|..||..+.|+.+--.
T Consensus 28 i~YlTGf~~~~~er~~~l~v~~~g~~~l~~~~~y~ 62 (132)
T 3ooo_A 28 VNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEV 62 (132)
T ss_dssp HHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGH
T ss_pred HHHHhCCCCCCCcceEEEEEeCCCCEEEEEeccch
Confidence 457888886665 347889999999999887643
No 43
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=42.38 E-value=12 Score=25.21 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=23.8
Q ss_pred ecccCCCCccCCC--cceEEeecCceEEEechhH
Q psy4232 5 LCAYSGYKIYPGH--GKTLVKVDGKSFTFINSKC 36 (130)
Q Consensus 5 ~C~Fsg~~IyPG~--G~~~Vr~Dgkv~~F~ssKc 36 (130)
+++|||+.-.||. +.++|..||..+.|+.+.-
T Consensus 30 i~yltGf~g~~~er~~~lli~~~g~~~l~~d~~~ 63 (138)
T 3pn9_A 30 INYLTGFYSDPHERQMFLFVLADQEPLLFVPALE 63 (138)
T ss_dssp HHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGG
T ss_pred eeeecCCCCCCccceEEEEEeCCCCEEEEEeccc
Confidence 4677777655543 5788999999999998754
No 44
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=42.24 E-value=7.7 Score=24.16 Aligned_cols=11 Identities=55% Similarity=1.062 Sum_probs=8.7
Q ss_pred eecccCCCCcc
Q psy4232 4 GLCAYSGYKIY 14 (130)
Q Consensus 4 ~~C~Fsg~~Iy 14 (130)
-.|.+|||+|-
T Consensus 24 IrCpyCGyrii 34 (48)
T 4ayb_P 24 VRCPYCGYKII 34 (48)
T ss_dssp SCCTTTCCSCE
T ss_pred cccCccCcEEE
Confidence 35999999873
No 45
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=40.86 E-value=13 Score=26.25 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCcceEEeecCceEEEechhHHhhhhcccCCc
Q psy4232 16 GHGKTLVKVDGKSFTFINSKCESSFKMRRNPR 47 (130)
Q Consensus 16 G~G~~~Vr~Dgkv~~F~ssKc~~~~~~krnPr 47 (130)
+.-.-||..||.+++++|....+.-.+..||+
T Consensus 30 ~s~v~~~~~~~~~~~~~s~~~~~~~nl~~~pr 61 (148)
T 3tgv_A 30 VSYAPFVQNQEGYFVLISHIARHARNLEVNPQ 61 (148)
T ss_dssp EEEEEEEEETTEEEEEEETTSHHHHHHHHSCE
T ss_pred EEEEEEEEECCEEEEEECCccHHHHHHHhCCC
Confidence 44466888899888888888888778999996
No 46
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=40.50 E-value=6.7 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.3
Q ss_pred ceeecccCCCCccCCCcceEEeec
Q psy4232 2 KLGLCAYSGYKIYPGHGKTLVKVD 25 (130)
Q Consensus 2 k~~~C~Fsg~~IyPG~G~~~Vr~D 25 (130)
++..|. ||..|..+.-+.|+..|
T Consensus 20 kT~~C~-CG~~~~~~k~rif~~~~ 42 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRIFGRAD 42 (71)
T ss_dssp SEEEET-TTEEEECCSSSCBSCCS
T ss_pred cEEECC-CCCeeeeceEEEEEecC
Confidence 567898 99999999999988654
No 47
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.99 E-value=13 Score=22.48 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=15.5
Q ss_pred eecccCCCCccCCCcceEEeecCceEE
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
..|..|+..|+ | .+|...|+.|+
T Consensus 6 ~~C~~C~~~I~-~---~~~~a~~~~~H 28 (70)
T 2d8x_A 6 SGCHQCGEFII-G---RVIKAMNNSWH 28 (70)
T ss_dssp SBCSSSCCBCC-S---CCEEETTEEEC
T ss_pred CcCccCCCEec-c---eEEEECccccc
Confidence 46888888887 2 35666666655
No 48
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.67 E-value=17 Score=22.31 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=16.6
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|..||..|+|+. .+|..+|++|+
T Consensus 11 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 36 (77)
T 1g47_A 11 SATCERCKGGFAPAE--KIVNSNGELYH 36 (77)
T ss_dssp CCBCSSSCCBCCSTT--TCEEETTEEEC
T ss_pred CCCchhcCCccCCCc--eEEEeCccEec
Confidence 457888999998753 23444565554
No 49
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.26 E-value=23 Score=21.27 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=16.9
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|..|+.+|++. +|...|++|+
T Consensus 5 ~~~C~~C~~~I~~~----~~~a~~~~~H 28 (70)
T 2d8z_A 5 SSGCVQCKKPITTG----GVTYREQPWH 28 (70)
T ss_dssp CCBCSSSCCBCCSS----EEESSSSEEE
T ss_pred CCCCcccCCeeccc----eEEECccccC
Confidence 35788888888842 3666777765
No 50
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=38.68 E-value=21 Score=24.65 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=24.1
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE---EechhHHhhh
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT---FINSKCESSF 40 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~---F~ssKc~~~~ 40 (130)
...|.-||..|+.+ .+|...|+.|+ |.=..|...+
T Consensus 61 ~~~C~~C~~~I~~~---~~v~a~~~~wH~~CF~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADR---FLLYAMDSYWHSRCLKCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSS---SEEEETTEEEETTTSBCTTTCCBG
T ss_pred CCcCcCCCCCcCCc---EEEEeCCcEEcccccCcCcCCCcc
Confidence 35799999999943 45777888886 4444564443
No 51
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.54 E-value=15 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=17.6
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|+.|+.+|+ | ++|...|++|+
T Consensus 15 ~~~C~~C~~~I~-~---~~~~a~~~~~H 38 (81)
T 2dlo_A 15 LEKCATCSQPIL-D---RILRAMGKAYH 38 (81)
T ss_dssp CCBCTTTCCBCC-S---CCEEETTEEEC
T ss_pred CCccccCCCeec-c---eeEEECCcccc
Confidence 357888999998 2 36777777776
No 52
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.70 E-value=19 Score=22.28 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=16.8
Q ss_pred ecccCCCCccCCCcceEEeecCceEEEechhHHh
Q psy4232 5 LCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCES 38 (130)
Q Consensus 5 ~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~ 38 (130)
.|+.|+..|.+| ..|+-.||++| |. .|..
T Consensus 33 ~C~~C~~~L~~~--~~f~~~~~~~y--C~-~C~~ 61 (73)
T 1wig_A 33 LCVRCGQMFAEG--EEMYLQGSSIW--HP-ACRQ 61 (73)
T ss_dssp CCSSSCCCCCSS--CCCEEETTEEE--CT-THHH
T ss_pred EeCCCCCCCCCC--CeeEeeCCEEE--Ch-HHCh
Confidence 466677766553 44666677754 54 3533
No 53
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=37.27 E-value=17 Score=23.32 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=22.3
Q ss_pred eeecccCCCC-ccCCCcceEEeecCceEEEe
Q psy4232 3 LGLCAYSGYK-IYPGHGKTLVKVDGKSFTFI 32 (130)
Q Consensus 3 ~~~C~Fsg~~-IyPG~G~~~Vr~Dgkv~~F~ 32 (130)
+..|.+||.. +.+|...+-+.-+|..+..-
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~ 32 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLK 32 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEEEE
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEEEc
Confidence 3579999865 88898887777788766543
No 54
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.91 E-value=13 Score=23.68 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=17.8
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|.-|+..||++.-. ..+|++|+
T Consensus 15 ~~~C~~C~~~I~~~e~v---~a~~~~wH 39 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL---CVNGHFFH 39 (82)
T ss_dssp SCBCSSSCCBCCTTTBC---CBTTBCCB
T ss_pred CCCCcccCCCcccceEE---EECCCeeC
Confidence 45799999999987643 34566654
No 55
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=36.46 E-value=15 Score=33.25 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=15.4
Q ss_pred ecccCCCCccCCCcceEEeecCceEEEechhH
Q psy4232 5 LCAYSGYKIYPGHGKTLVKVDGKSFTFINSKC 36 (130)
Q Consensus 5 ~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc 36 (130)
-|.|||..-+ .-.|+=..--.||||+++
T Consensus 8 ~c~~c~~~~~----~~~~~~~~~~~~fcn~~~ 35 (800)
T 2wjy_A 8 ACSYCGIHDP----ACVVYCNTSKKWFCNGRG 35 (800)
T ss_dssp SCTTTCCCCG----GGEEEETTTTEEEESCCT
T ss_pred hccccCCCCC----CeEEEcCCCCCccccCCC
Confidence 4677765432 234444455567777665
No 56
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=36.37 E-value=21 Score=23.97 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=9.6
Q ss_pred eecccCCCCccCCC
Q psy4232 4 GLCAYSGYKIYPGH 17 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~ 17 (130)
..|.-||..|++|.
T Consensus 4 ~~C~~C~~~I~~~~ 17 (126)
T 2xqn_T 4 PRCAGCDELIFSNE 17 (126)
T ss_dssp CBBTTTSSBCCSSC
T ss_pred CCCccCCCEeCCce
Confidence 46777777777653
No 57
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=36.27 E-value=13 Score=33.65 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=0.0
Q ss_pred cccCCCCccCCCcceEEeecCceEEEechhH
Q psy4232 6 CAYSGYKIYPGHGKTLVKVDGKSFTFINSKC 36 (130)
Q Consensus 6 C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc 36 (130)
|+|||..-+ .-.|+=..--.||||+++
T Consensus 14 c~yc~~~~~----~~~~~c~~~~~wfcn~~~ 40 (802)
T 2xzl_A 14 CAYCGIDSA----KCVIKCNSCKKWFCNTKN 40 (802)
T ss_dssp CTTTCCCCT----TTEEEETTTCCEEECCCS
T ss_pred CcccCCCCC----ceEEEeCCCCcEecCCCC
No 58
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=35.81 E-value=11 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=14.9
Q ss_pred CceeecccCCCCccCCCc
Q psy4232 1 MKLGLCAYSGYKIYPGHG 18 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~G 18 (130)
|+...|..|||-..|-.|
T Consensus 2 m~~y~C~vCGyvyd~~~G 19 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEH 19 (46)
T ss_dssp CCCEEETTTCCEECGGGG
T ss_pred CCEEECCCCCeEEeCCcC
Confidence 788899999998777555
No 59
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.37 E-value=17 Score=22.64 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=17.4
Q ss_pred eecccCCCCccCCCcceEEeecCceEE
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
..|..|+..|+ | .+|...|++|+
T Consensus 16 ~~C~~C~~~I~-~---~~v~a~~~~wH 38 (81)
T 1v6g_A 16 TRCFSCDQFIE-G---EVVSALGKTYH 38 (81)
T ss_dssp CBCTTTCCBCC-S---CCEEETTEEEC
T ss_pred CcCccccCEec-c---ceEEECCceeC
Confidence 47999999998 3 36677777766
No 60
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=34.98 E-value=29 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=17.1
Q ss_pred ecccCCCCccCCCcceEEeecCceEE
Q psy4232 5 LCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 5 ~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
.|..|+..|+|+- ++|...|.+|+
T Consensus 68 ~C~~C~~~I~~~e--~~~~a~~~~~H 91 (131)
T 2xjy_A 68 LCASCDKRIRAYE--MTMRVKDKVYH 91 (131)
T ss_dssp ECTTTCCEECTTS--EEEEETTEEEE
T ss_pred ChhhcCCccCccc--eeEeeCCceEC
Confidence 7889999998743 45566666665
No 61
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.75 E-value=14 Score=24.89 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=12.9
Q ss_pred eecccCCCCcc--CCCcceEEe
Q psy4232 4 GLCAYSGYKIY--PGHGKTLVK 23 (130)
Q Consensus 4 ~~C~Fsg~~Iy--PG~G~~~Vr 23 (130)
..|+|||...- |+.|++--.
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~ 49 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCS 49 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEET
T ss_pred CcCCCCCCcceeccCCCeEECC
Confidence 57999987543 666654433
No 62
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.57 E-value=25 Score=21.13 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=5.8
Q ss_pred eecccCCCCcc
Q psy4232 4 GLCAYSGYKIY 14 (130)
Q Consensus 4 ~~C~Fsg~~Iy 14 (130)
..|..|+..|+
T Consensus 6 ~~C~~C~~~I~ 16 (69)
T 2cur_A 6 SGCVKCNKAIT 16 (69)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCcccCCEeC
Confidence 34555555554
No 63
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=33.78 E-value=21 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=13.3
Q ss_pred CceeecccCCCCccCCC
Q psy4232 1 MKLGLCAYSGYKIYPGH 17 (130)
Q Consensus 1 mk~~~C~Fsg~~IyPG~ 17 (130)
|+...|..|||---|-.
T Consensus 1 m~~y~C~~CGyvYd~~~ 17 (52)
T 1e8j_A 1 MDIYVCTVCGYEYDPAK 17 (52)
T ss_dssp CCCEECSSSCCCCCTTT
T ss_pred CCcEEeCCCCeEEcCCc
Confidence 78889999998765533
No 64
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.70 E-value=12 Score=23.45 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=9.4
Q ss_pred eecccCCCCccC
Q psy4232 4 GLCAYSGYKIYP 15 (130)
Q Consensus 4 ~~C~Fsg~~IyP 15 (130)
..|+-|+.+|+|
T Consensus 16 ~~C~~C~~~I~~ 27 (82)
T 2ehe_A 16 NTCAECQQLIGH 27 (82)
T ss_dssp CBCTTTCCBCCS
T ss_pred CcCccCCCcccc
Confidence 468888888886
No 65
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=32.99 E-value=22 Score=27.07 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=19.7
Q ss_pred eeecccCCCCccCCCcceEEeecCceEEEechhHHh
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCES 38 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~ 38 (130)
...|..||.. ..+++-.||. ++|+ .|..
T Consensus 14 ~~~CP~Cg~~-----d~~~~~~dg~--~~C~-~Cg~ 41 (255)
T 1nui_A 14 HIPCDNCGSS-----DGNSLFSDGH--TFCY-VCEK 41 (255)
T ss_dssp EECCSSSCCS-----SCEEEETTSC--EEET-TTCC
T ss_pred CCcCCCCCCC-----CCceEeCCCC--eecc-cCCC
Confidence 4579999864 2355557883 8999 6864
No 66
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=32.96 E-value=18 Score=22.96 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.2
Q ss_pred eEEeecCceEEEechhH
Q psy4232 20 TLVKVDGKSFTFINSKC 36 (130)
Q Consensus 20 ~~Vr~Dgkv~~F~ssKc 36 (130)
-+.+.||.+++|-+-|-
T Consensus 11 nmfk~dg~vihF~nPkV 27 (58)
T 3mcb_B 11 NMFTNQGTVIHFNNPKV 27 (58)
T ss_dssp EEEETTSEEEEEESCEE
T ss_pred EEEecCCEEEEecCcce
Confidence 46788999999988774
No 67
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.95 E-value=22 Score=21.99 Aligned_cols=23 Identities=4% Similarity=0.104 Sum_probs=16.2
Q ss_pred eecccCCCCccCCCcceEEeecCceEE
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
..|+-|+.+|++ .+|...|++|+
T Consensus 16 ~~C~~C~~~I~~----~~v~a~~~~~H 38 (80)
T 1x3h_A 16 PKCGGCNRPVLE----NYLSAMDTVWH 38 (80)
T ss_dssp CBCTTTCCBCCS----SCEEETTEEEC
T ss_pred CccccCCCeecc----eeEEECCCeEe
Confidence 468888888885 35666676665
No 68
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.00 E-value=28 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=16.5
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|.-|+.+|+++ .+|...|+.++
T Consensus 3 ~~~C~~C~~~I~~~---~~~~a~~~~wH 27 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR---YFLKAIDQYWH 27 (114)
T ss_dssp CBCBSSSCSCBCSS---EEEECSSSEEC
T ss_pred CCCCcCCCCeeCCc---EEEEECchhHH
Confidence 35688888888843 45666666664
No 69
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=30.51 E-value=19 Score=25.57 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=22.0
Q ss_pred eecccCCCCccCCCcceEEeecCceEEEechhHHhhhh
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFK 41 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~~ 41 (130)
.+|+|||.. -|++.+.-+|-|. +|..-|-
T Consensus 37 y~CpfCgk~--------~vKR~a~GIW~C~-kCg~~~A 65 (103)
T 4a17_Y 37 YGCPFCGKV--------AVKRAAVGIWKCK-PCKKIIA 65 (103)
T ss_dssp EECTTTCCE--------EEEEEETTEEEET-TTTEEEE
T ss_pred CCCCCCCCc--------eeeecCcceEEcC-CCCCEEe
Confidence 579999865 2888888899995 6776554
No 70
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=30.01 E-value=22 Score=23.17 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.1
Q ss_pred eEEeecCceEEEechhH
Q psy4232 20 TLVKVDGKSFTFINSKC 36 (130)
Q Consensus 20 ~~Vr~Dgkv~~F~ssKc 36 (130)
-+.+.||.|++|-+-|-
T Consensus 11 nmfk~dg~vihF~nPkV 27 (66)
T 3lkx_A 11 NMFTNQGTVIHFNNPKV 27 (66)
T ss_dssp EEEETTSEEEEEESCEE
T ss_pred EEEecCCEEEEecCcce
Confidence 36788999999988774
No 71
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=29.92 E-value=42 Score=22.50 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=19.1
Q ss_pred eecccCCCCccCCCcceEEeecCceEEEechhHH
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCE 37 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~ 37 (130)
..|.||+-+ +.++.|. +++-+|+|.+ |.
T Consensus 38 ~~CPfh~e~----~pSf~V~-~~k~~~~Cf~-cg 65 (103)
T 1d0q_A 38 GLCPFHGEK----TPSFSVS-PEKQIFHCFG-CG 65 (103)
T ss_dssp ECCSSSCCS----SCCEEEE-TTTTEEEETT-TC
T ss_pred EECCCCCCC----CCcEEEE-cCCCEEEECC-CC
Confidence 468888744 4577774 5567888886 54
No 72
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=29.05 E-value=31 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=25.3
Q ss_pred ecccCCCCccCCC--cceEEeecCceEEEechhHHh
Q psy4232 5 LCAYSGYKIYPGH--GKTLVKVDGKSFTFINSKCES 38 (130)
Q Consensus 5 ~C~Fsg~~IyPG~--G~~~Vr~Dgkv~~F~ssKc~~ 38 (130)
+.+|||+.-.||. +.++|..||..+.|+.+--..
T Consensus 29 i~YlTGf~~~~~er~~~llv~~~g~~~l~~~~~~~~ 64 (140)
T 3i7m_A 29 IEYLTGFGSDPIERVLALVVFPDQDPFIFAPALEVE 64 (140)
T ss_dssp HHHHHCCCCCCCSSCCEEEECSSSCCEEEEEGGGHH
T ss_pred ceeecCCCCCCccceEEEEEeCCCCEEEEEecccHH
Confidence 3578888866652 478888999999999876543
No 73
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.08 E-value=25 Score=25.64 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=9.9
Q ss_pred eecccCCCCccCCC
Q psy4232 4 GLCAYSGYKIYPGH 17 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~ 17 (130)
..|..|+..|++|.
T Consensus 8 ~~C~~C~~~I~~~~ 21 (192)
T 1b8t_A 8 KKCGVCQKAVYFAE 21 (192)
T ss_dssp EECTTTCCEECSSC
T ss_pred CcCccCCCeeccee
Confidence 46777777777765
No 74
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.25 E-value=27 Score=23.73 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=18.4
Q ss_pred eecccCCCCccCCCcceEEeecCceEEEechhHHh
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCES 38 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~ 38 (130)
..|+|||..= |++.+.-+|-|. +|..
T Consensus 36 y~CpfCGk~~--------vkR~a~GIW~C~-kCg~ 61 (83)
T 3j21_i 36 HTCPVCGRKA--------VKRISTGIWQCQ-KCGA 61 (83)
T ss_dssp BCCSSSCSSC--------EEEEETTEEEET-TTCC
T ss_pred cCCCCCCCce--------eEecCcCeEEcC-CCCC
Confidence 5799998762 777777788874 4544
No 75
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=26.61 E-value=86 Score=21.47 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=21.7
Q ss_pred HhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy4232 84 GASINDILAKRNVKPEIRKAQREQAIKAAKEQ 115 (130)
Q Consensus 84 g~sle~I~~kR~qk~e~r~a~r~~a~~~~Ke~ 115 (130)
..||++|+.+-..-.|-|+++-.+-+....|+
T Consensus 41 ~~SleeIqkKLeAAeERRks~EA~~L~~Laek 72 (87)
T 4f6r_C 41 DPSLEEIQKKLEAAEERRKAHFAAMLERLQEK 72 (87)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999887776677777666655554444
No 76
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.46 E-value=25 Score=21.77 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.2
Q ss_pred CceeecccCCCCccC
Q psy4232 1 MKLGLCAYSGYKIYP 15 (130)
Q Consensus 1 mk~~~C~Fsg~~IyP 15 (130)
|....|..|||---|
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 788899999986554
No 77
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.25 E-value=39 Score=24.53 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=16.4
Q ss_pred ceeecccCCCCccCCCcceEEeecCceE
Q psy4232 2 KLGLCAYSGYKIYPGHGKTLVKVDGKSF 29 (130)
Q Consensus 2 k~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~ 29 (130)
....|..|+..|+.+ .+|...|+.+
T Consensus 4 ~~~~C~~C~~~I~~~---~~~~a~~~~w 28 (188)
T 1rut_X 4 SWKRCAGCGGKIADR---FLLYAMDSYW 28 (188)
T ss_dssp CCCBBTTTCCBCCCS---EEEEETTEEE
T ss_pred CCCcCccCCCEeCCc---eeEEecCcEe
Confidence 456799999999843 3455555544
No 78
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.09 E-value=26 Score=21.78 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.1
Q ss_pred CceeecccCCCCccC
Q psy4232 1 MKLGLCAYSGYKIYP 15 (130)
Q Consensus 1 mk~~~C~Fsg~~IyP 15 (130)
|+...|..|||---|
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 788899999995444
No 79
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=25.38 E-value=24 Score=24.48 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=19.5
Q ss_pred eecccCCCCccCCCcceEEeecCceEEEechhHHhhh
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSF 40 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~ 40 (130)
..|+|||..= |++.+.-+|-|. +|..-|
T Consensus 37 y~CpfCgk~~--------vkR~a~GIW~C~-~Cg~~~ 64 (92)
T 3iz5_m 37 YFCEFCGKFA--------VKRKAVGIWGCK-DCGKVK 64 (92)
T ss_dssp BCCTTTCSSC--------BEEEETTEEECS-SSCCEE
T ss_pred ccCcccCCCe--------eEecCcceEEcC-CCCCEE
Confidence 5799998662 777777788884 465444
No 80
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=25.35 E-value=23 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=19.4
Q ss_pred eecccCCCCccCCCcceEEeecCceEEEechhHHhhh
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSF 40 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~ 40 (130)
.+|+|||..= |++.+.-+|-|. +|..-|
T Consensus 37 y~CpfCgk~~--------vkR~a~GIW~C~-~C~~~~ 64 (92)
T 3izc_m 37 YDCSFCGKKT--------VKRGAAGIWTCS-CCKKTV 64 (92)
T ss_dssp CCCSSSCSSC--------CEEEETTEEECT-TTCCEE
T ss_pred CcCCCCCCce--------eeecccceEEcC-CCCCEE
Confidence 5799998552 677777788884 465444
No 81
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}
Probab=24.07 E-value=38 Score=24.04 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=16.2
Q ss_pred eecCceEEEechhHHhhhhcccCCc
Q psy4232 23 KVDGKSFTFINSKCESSFKMRRNPR 47 (130)
Q Consensus 23 r~Dgkv~~F~ssKc~~~~~~krnPr 47 (130)
..||.++++++.-..+.-.++.||+
T Consensus 47 ~d~~~l~f~~~~~~~k~~nl~~np~ 71 (151)
T 2q9k_A 47 KDETTIRFAIEADSLLVKTLADHPV 71 (151)
T ss_dssp EETTEEEEEEETTCTHHHHHHHSCC
T ss_pred eCCCEEEEEECCCcHHHHHHHhCCc
Confidence 3466655555555566666888986
No 82
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}
Probab=24.01 E-value=29 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=15.4
Q ss_pred eEEeecCceEEEech-hHHhhhhcccCCcc
Q psy4232 20 TLVKVDGKSFTFINS-KCESSFKMRRNPRK 48 (130)
Q Consensus 20 ~~Vr~Dgkv~~F~ss-Kc~~~~~~krnPrk 48 (130)
-|+. |+..+||..+ ...+.-.+..||+=
T Consensus 36 ~~~~-~~~~l~f~t~~~s~k~~~l~~np~v 64 (128)
T 3db0_A 36 TFLH-DGLTLYTPSGKELPKTEEVRRNPHV 64 (128)
T ss_dssp ECEE-ETTEEEEEC----CTTCCCCCCCEE
T ss_pred EEEe-cCCEEEEEECCCCHHHHHHHhCCce
Confidence 3454 4445555554 45566668999974
No 83
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.90 E-value=52 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=16.0
Q ss_pred CCCcceEEe-ecCceEEEechhHHhh
Q psy4232 15 PGHGKTLVK-VDGKSFTFINSKCESS 39 (130)
Q Consensus 15 PG~G~~~Vr-~Dgkv~~F~ssKc~~~ 39 (130)
||.--.-|+ .||++|||=...=.+.
T Consensus 18 pgt~W~~v~T~dGR~fyyN~~Tk~S~ 43 (73)
T 2dk7_A 18 PGTPWCVVWTGDERVFFYNPTTRLSM 43 (73)
T ss_dssp SSSSCEEEEESSSCEEEEETTTTEEC
T ss_pred CCCCcEEEECCCCCEEEecCccccee
Confidence 455444544 6999999976554443
No 84
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.60 E-value=60 Score=23.05 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=14.7
Q ss_pred eecccCCCCccCCCcceEEeecCceEE
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
..|..|+..|+|+- +.+...|.+|+
T Consensus 66 ~~C~~C~~~I~~~~--~v~~a~~~~~H 90 (169)
T 2rgt_A 66 TKCAACQLGIPPTQ--VVRRAQDFVYH 90 (169)
T ss_dssp CBCTTTCCBCCTTS--EEEEETTEEEE
T ss_pred ccccccccccCCCc--EEEEcCCceEe
Confidence 35788888888752 33344444444
No 85
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.32 E-value=44 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=15.0
Q ss_pred eeecccCCCCccCCCcceEEeecCceEE
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFT 30 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~ 30 (130)
...|..|+..|+++. +|...|+.++
T Consensus 5 ~~~C~~C~~~I~~~~---~~~a~~~~wH 29 (122)
T 1m3v_A 5 WKRCAGCGGKIADRF---LLYAMDSYWH 29 (122)
T ss_dssp CCCBSSSSSCCCSSC---CEEETTEEEC
T ss_pred CCCCcccCCEeCCcE---EEEECCceeH
Confidence 456888888888652 2444455443
No 86
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=22.76 E-value=25 Score=23.09 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=22.1
Q ss_pred eeecccCCCCccCCCcceEEeecCceEEEechhHHhhh
Q psy4232 3 LGLCAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSF 40 (130)
Q Consensus 3 ~~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ssKc~~~~ 40 (130)
+..|.-||.++....- -.-.-|||.+|...=
T Consensus 9 ~~~CP~Cgkp~~W~~~-------~~~rPFCSeRCr~iD 39 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEI-------SPFRPFCSKRCQLID 39 (68)
T ss_dssp EEECTTTCCEEECSSS-------SSCCSSSSHHHHHHH
T ss_pred cCcCCCCCCccccccc-------CCCCcccCHHHHhhh
Confidence 4579999988775433 344579999998753
No 87
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.08 E-value=52 Score=20.86 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=4.4
Q ss_pred EEeecCce
Q psy4232 21 LVKVDGKS 28 (130)
Q Consensus 21 ~Vr~Dgkv 28 (130)
|+-.||.+
T Consensus 66 f~~~~g~~ 73 (90)
T 2dar_A 66 FVEEKGAL 73 (90)
T ss_dssp BEESSSCE
T ss_pred eEeECCEE
Confidence 45556654
No 88
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.08 E-value=60 Score=21.92 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=7.1
Q ss_pred ecccCCCCccC
Q psy4232 5 LCAYSGYKIYP 15 (130)
Q Consensus 5 ~C~Fsg~~IyP 15 (130)
.|..|+..|+|
T Consensus 10 ~C~~C~~~I~~ 20 (123)
T 2l3k_A 10 LCASCDKRIRA 20 (123)
T ss_dssp CCSSSSCCCCT
T ss_pred cccCCCCeecC
Confidence 56666666665
No 89
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=22.00 E-value=66 Score=21.30 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=17.1
Q ss_pred cCCCCccCCCcceEEeecCceEEEec
Q psy4232 8 YSGYKIYPGHGKTLVKVDGKSFTFIN 33 (130)
Q Consensus 8 Fsg~~IyPG~G~~~Vr~Dgkv~~F~s 33 (130)
|||..|+||-..+ --||.++.-=|
T Consensus 24 ~cG~EI~~gd~yl--~f~GeiIl~eN 47 (72)
T 2dsm_A 24 FYGDEVTPVDDYV--IDGGEIILREN 47 (72)
T ss_dssp TTSSCBCTTSCEE--EETTEEEEHHH
T ss_pred ccCCeeecCCeEE--EECCeeehHHH
Confidence 9999999998644 33787665433
No 90
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.86 E-value=44 Score=22.46 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred eecccCCCC-ccCCCcceEEeecCce-------EEEechhHHhhh
Q psy4232 4 GLCAYSGYK-IYPGHGKTLVKVDGKS-------FTFINSKCESSF 40 (130)
Q Consensus 4 ~~C~Fsg~~-IyPG~G~~~Vr~Dgkv-------~~F~ssKc~~~~ 40 (130)
-.|.+||.. ..+++..+-+.-.|.. .+||.. |...+
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~-CGE~~ 46 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVH-CEESI 46 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESS-SSCEE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCC-CCCEe
Confidence 379999876 5555554444444443 556654 64433
No 91
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}
Probab=20.70 E-value=38 Score=22.52 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=15.8
Q ss_pred EEeecCceEEEechhHHhhhhcccCCc
Q psy4232 21 LVKVDGKSFTFINSKCESSFKMRRNPR 47 (130)
Q Consensus 21 ~Vr~Dgkv~~F~ssKc~~~~~~krnPr 47 (130)
|+..||.++++.+.-..+.-.+..||+
T Consensus 36 ~~~d~~~l~f~t~~~s~k~~~l~~np~ 62 (131)
T 3f7e_A 36 FAWDGEVLRFTHTTKRQKYRNIKANPA 62 (131)
T ss_dssp CEECSSCEEEEEETTSHHHHHHHHCCE
T ss_pred EEEECCEEEEEECCCCHHHHHHhhCCc
Confidence 444455544444444566666888886
No 92
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.36 E-value=30 Score=22.26 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=5.9
Q ss_pred ecccCCCCc
Q psy4232 5 LCAYSGYKI 13 (130)
Q Consensus 5 ~C~Fsg~~I 13 (130)
.|.+||++|
T Consensus 40 RC~~CG~RI 48 (63)
T 3h0g_L 40 RCRECGHRV 48 (63)
T ss_dssp CCSSSCCCC
T ss_pred ECCCCCcEE
Confidence 477777665
No 93
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.05 E-value=24 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=14.4
Q ss_pred eecccCCCCccCCCcceEEeecCceEEEe
Q psy4232 4 GLCAYSGYKIYPGHGKTLVKVDGKSFTFI 32 (130)
Q Consensus 4 ~~C~Fsg~~IyPG~G~~~Vr~Dgkv~~F~ 32 (130)
..|+|||..= |++.+.-+|-|
T Consensus 27 y~C~fCgk~~--------vkR~a~GIW~C 47 (72)
T 3jyw_9 27 YDCSFCGKKT--------VKRGAAGIWTC 47 (72)
T ss_dssp BCCSSCCSSC--------BSBCSSSCBCC
T ss_pred ccCCCCCCce--------eEecCCCeEEC
Confidence 5799998652 66666666666
Done!