RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4232
         (130 letters)



>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 53

 Score = 80.1 bits (198), Expect = 5e-22
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 6  CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYR 56
          C Y G  I PG G   V  DG +  F +SKCE++  + R  R + WT   R
Sbjct: 3  CDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 53


>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase
           {Arthrobacter nicotinovorans [TaxId: 29320]}
          Length = 360

 Score = 25.3 bits (54), Expect = 3.1
 Identities = 10/76 (13%), Positives = 22/76 (28%)

Query: 50  TWTVLYRRKQKKGQEEEATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAI 109
            W  L    +++ + + A             A + A     L     + + +  + E   
Sbjct: 37  YWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYAQFLWFDERRQKGQARKVELYQ 96

Query: 110 KAAKEQKRAQKEAKKP 125
           KAA       +  +  
Sbjct: 97  KAAPLLSPPAERHELV 112


>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
           cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
          Length = 220

 Score = 24.8 bits (54), Expect = 3.1
 Identities = 7/110 (6%), Positives = 29/110 (26%), Gaps = 18/110 (16%)

Query: 38  SSFKMRRNPRKVTWTVLYRRKQKKGQEEEATRKRTRRTHKFQ---RAIVGASINDILAKR 94
              K + +  +   + + + + K+   +E  +  +      +   +A + +  + +    
Sbjct: 51  LCIKHKISDYRTMTSQVLQEQTKQLNNDELVKICSEYVFSLRKDIKAFLQSFEDCVDRLV 110

Query: 95  NVKPEIR---------------KAQREQAIKAAKEQKRAQKEAKKPPPPT 129
                 +               +        + K  + A     + P   
Sbjct: 111 EKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKI 160


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 24.8 bits (53), Expect = 4.5
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 3/125 (2%)

Query: 6   CAYSGYKIYPGHGKTLVKVDGKSFTFINSKCESSFKMRRNPRKVTWTVLYRRKQKKGQEE 65
            A +  +     G   ++VDG     + +  +++ +   N    T  +     +      
Sbjct: 212 VAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTL-IETLCFRYGPHTM 270

Query: 66  EATRKRTRRTHKFQRAIVGASINDILAKRNVKPEIRKAQREQAI--KAAKEQKRAQKEAK 123
                   R+ + +             K      +   + E  +  +A +E K A K+A 
Sbjct: 271 SGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKAD 330

Query: 124 KPPPP 128
           + P  
Sbjct: 331 ETPKQ 335


>d1wpua1 d.275.1.1 (A:5-148) Hut operon positive regulatory
          protein HutP {Bacillus subtilis [TaxId: 1423]}
          Length = 144

 Score = 23.3 bits (50), Expect = 8.4
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 67 ATRKRTRRTHKFQRAIVGASIN 88
            +  +   HK   AI  AS  
Sbjct: 35 LGKVGSMDAHKVIAAIETASKK 56


>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 257

 Score = 23.6 bits (50), Expect = 9.3
 Identities = 4/26 (15%), Positives = 14/26 (53%)

Query: 22 VKVDGKSFTFINSKCESSFKMRRNPR 47
          ++V   +  F  +  + +++++  PR
Sbjct: 1  LQVKPCTPEFYQTHFQLAYRLQSRPR 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 477,693
Number of extensions: 20441
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 21
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)