BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4233
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 25/167 (14%)
Query: 25 GASGYMGSYLCNKLGKQGS--QIIIPYRGNFYDVRDL-RLCGDLGQVLFQPYHPRNDDEI 81
GA+G G +L +++ + + ++I P R + L G L ++L P+ D I
Sbjct: 12 GATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELL-----PQLDGSI 66
Query: 82 RKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNADPNP 141
A I G E A + + ++P + + + EMG ++ +SAL AD
Sbjct: 67 DTAFCCLGTTIKEAGSEEAFRAV-----DFDLPLAVGKRALEMGARHYLVVSALGADAKS 121
Query: 142 PTYYISGGSQFYRTKYQGEKE-VLRE--FPEATIFRPSDMYGSGDKF 185
+Y + +GE E L+E +P+ TI RPS ++G ++F
Sbjct: 122 SIFY---------NRVKGELEQALQEQGWPQLTIARPSLLFGPREEF 159
>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|B Chain B, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|C Chain C, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
pdb|3RKR|D Chain D, Crystal Structure Of A Metagenomic Short-Chain
Oxidoreductase (Sdr) In Complex With Nadp
Length = 262
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 14 SSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLR 60
SS +G VA V GAS +G+ + KLG G+++++ R DV LR
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTAR----DVEKLR 67
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 16 FNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
G VA V GAS +G + L KQG+ +++ Y GN
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGN 38
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 31/176 (17%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLG-QVLFQPYHPRNDDEI 81
+ GA+G +G + +L + ++I DV+DL + L F P
Sbjct: 17 ITGANGQLGREIQKQLKGKNVEVIPT------DVQDLDITNVLAVNKFFNEKKP------ 64
Query: 82 RKAIKYSNVVINLIGREFATKNFTIADANVEI----PARLARLSKEMGVEKFIHISA--- 134
NVVIN K D +I P LA + +G E + IS
Sbjct: 65 -------NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAE-IVQISTDYV 116
Query: 135 LNADPNPPTYY---ISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLR 187
+ + P ++ S + +TK +GE V P+ I R + +YG G+ F++
Sbjct: 117 FDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAWLYGDGNNFVK 172
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
V G SGY+GS+ C +L + G +II
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDVII 29
>pdb|1KBZ|A Chain A, Crystal Structure Of Apo-dtdp-6-deoxy-l-lyxo-4-hexulose
Reductase (rmld) From Salmonella Enterica Serovar
Typhimurium
pdb|1KC1|A Chain A, Crystal Structure Of Dtdp-6-deoxy-l-lyxo-4-hexulose
Reductase (rmld) In Complex With Nadph
pdb|1KC3|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadph And
Dtdp-L-Rhamnose
pdb|1N2S|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadh
Length = 299
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 35/180 (19%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+FG +G +G L L G+ I + DV CGD +P+ E
Sbjct: 5 LFGKTGQVGWELQRSLAPVGNLIAL-------DVHSKEFCGDFS-------NPKGVAETV 50
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARL--------ARLSKEMGVEKFIHISA 134
+ ++ +V++N K A++ E+ L A+ + E G +H S
Sbjct: 51 RKLR-PDVIVNAAAHTAVDK----AESEPELAQLLNATSVEAIAKAANETGA-WVVHYST 104
Query: 135 ------LNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMY-GSGDKFLR 187
P T S + + +TK GEK + P+ IFR S +Y G G+ F +
Sbjct: 105 DYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGNNFAK 164
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 12 GRSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCG 63
G + + + GAS +G + +L + G ++II YR V +LR G
Sbjct: 21 GHXTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAG 72
>pdb|2Y7D|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7D|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Orthorombic Form)
pdb|2Y7E|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7E|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From Candidatus Cloacamonas Acidaminovorans
(Tetragonal Form)
pdb|2Y7F|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|C Chain C, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7F|D Chain D, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce)
pdb|2Y7G|A Chain A, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
pdb|2Y7G|B Chain B, Crystal Structure Of The 3-Keto-5-Aminohexanoate Cleavage
Enzyme (Kce) From C. Cloacamonas Acidaminovorans In
Complex With The Product Acetoacetate
Length = 282
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 105 TIADANVEIPARLARLSKEMG 125
IA++N ++ ARLAR++KE+G
Sbjct: 245 VIAESNAQLVARLARIAKEIG 265
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 159 GEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVY 215
G KE+L+ FP+ T++ P++ G L G R + K ++ T+ Y
Sbjct: 68 GVKELLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCY 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,589,280
Number of Sequences: 62578
Number of extensions: 397381
Number of successful extensions: 1060
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 31
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)