RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4233
(303 letters)
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 132 bits (334), Expect = 1e-37
Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 35/224 (15%)
Query: 21 ATVFGASGYMGSYLCNKLGKQG--SQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRND 78
+ GA+G G +L +++ + +++I P R RL +G +
Sbjct: 8 VLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL--AEHPRLDNPVGPL---------A 56
Query: 79 DEIRKAIKYSNVVINLIGREFATK----NFTIADANVEIPARLARLSKEMGVEKFIHISA 134
+ + + + +G F D ++P + + + EMG ++ +SA
Sbjct: 57 ELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVD--FDLPLAVGKRALEMGARHYLVVSA 114
Query: 135 LNADPNPPTYYISGGSQFYRTKYQGEKEVLR-EFPEATIFRPSDMYGSGDKFLRYYGHMW 193
L AD +Y R K + E+ + +P+ TI RPS ++G ++F R +
Sbjct: 115 LGADAKSSIFY-------NRVKGELEQALQEQGWPQLTIARPSLLFGPREEF-RLAEILA 166
Query: 194 RHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIY 237
+ R L K + D+A A+ + +
Sbjct: 167 APIARIL--PGKY-----HGIEACDLARALWRLALEEGKGVRFV 203
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 114 bits (287), Expect = 1e-30
Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 26/224 (11%)
Query: 21 ATVFGASGYMGSYLCNKLGKQG--SQIIIPYRGNFYDVRDLRLCGD-LGQVLFQPYHPRN 77
+ GASG G L ++ +QG S++ + R R L + V +
Sbjct: 21 VFILGASGETGRVLLKEILEQGLFSKVTLIGR------RKLTFDEEAYKNVNQEVVDFEK 74
Query: 78 DDEIRKAIKYSNVVINLIG--REFATKNFTIADANVEIPARLARLSKEMGVEKFIHISAL 135
D+ A + +V +G R A + + + A L+K G + F +S+
Sbjct: 75 LDDYASAFQGHDVGFCCLGTTRGKAGAE-GFVRVDRDYVLKSAELAKAGGCKHFNLLSSK 133
Query: 136 NADPNPPTYYISGGSQFYRTKYQGEKEVLR-EFPEATIFRPSDMYGSGDKFLRYYGHMWR 194
AD + Y+ + K + E +V +F ++FRP + + R + R
Sbjct: 134 GADKSSNFLYL-------QVKGEVEAKVEELKFDRYSVFRPGVLLCDRQES-RPGEWLVR 185
Query: 195 HVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAG-KIY 237
F L V V V A++ P ++
Sbjct: 186 KFFGSLP----DSWASGHSVPVVTVVRAMLNNVVRPRDKQMELL 225
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 89.3 bits (222), Expect = 3e-21
Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 42/230 (18%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLR-------LCGDLGQVLFQPYHP 75
V GA+G + YL ++L +G + + R N +LR + +L
Sbjct: 26 VVGANGKVARYLLSELKNKGHEPVAMVR-NEEQGPELRERGASDIVVANL---------- 74
Query: 76 RNDDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISAL 135
+++ A + V+ G T ++ + + +++ G+++FI +S++
Sbjct: 75 --EEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132
Query: 136 NADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPS---DMYGSGDKFLRYYGHM 192
+ K + E+ R + TI RP + +G
Sbjct: 133 GTVDPDQGP--MNMRHYLVAKRLADDELKRSSLDYTIVRPGPLSNEESTG---------- 180
Query: 193 WRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGP 242
I + + DVA I GK ++ +
Sbjct: 181 -------KVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLNG 223
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 87.6 bits (217), Expect = 1e-20
Identities = 33/254 (12%), Positives = 60/254 (23%), Gaps = 43/254 (16%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII------PYRGNFYDVRDLRLCGDLGQVLFQPYHPR 76
V GASG G + KL + + + GD+
Sbjct: 9 VTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDI----------T 58
Query: 77 NDDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPA-----------------RLAR 119
+ D I A + + ++ L K
Sbjct: 59 DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 118
Query: 120 LSKEMGVEKFIHISALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMY 179
+K GV+ + + ++ G K + E+ + TI R +
Sbjct: 119 AAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLL 178
Query: 180 GSGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQA 239
+ +L V DVA + A +A K +
Sbjct: 179 DKEGGVRE----LLVGKDDELLQTDTK------TVPRADVAEVCIQALLFEEAKNKAFDL 228
Query: 240 VGPKRYLLSELLDW 253
+ D+
Sbjct: 229 GSKPEGTSTPTKDF 242
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 80.0 bits (198), Expect = 3e-17
Identities = 29/237 (12%), Positives = 74/237 (31%), Gaps = 37/237 (15%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYR--GNFYDVRDLRL---CGDLGQVLFQPYHPRN 77
V GA+G +G + + G +++ +R + L ++ +
Sbjct: 18 VLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEM----------LD 67
Query: 78 DDEIRKAIKYSNVVINLIG--REFATKNFTIADANVEIPARLARLSKEMGVEKFIHIS-- 133
+ +A++ + VI G + + + + V + +++
Sbjct: 68 HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127
Query: 134 -ALNADPN--------PPTYYISGGSQFYRTKYQGEKEVLREFPE---ATIFRPSDMYGS 181
A+ P SG S + K+ +++ + I P + G
Sbjct: 128 YAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGE 187
Query: 182 GDKFLRYYGHMWRHVFR-KLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIY 237
D G + + ++ Y G+ + + + ++ A + G+ Y
Sbjct: 188 LD-IGPTTGRVITAIGNGEMTHYVAGQRNV---IDAAEAGRGLLMAL-ERGRIGERY 239
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 77.1 bits (190), Expect = 6e-17
Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 56/239 (23%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVR--------------DLRLC-GDLGQ 67
+ GASG++GS L N+ +G ++V L++ D+
Sbjct: 9 LIGASGFVGSALLNEALNRG-----------FEVTAVVRHPEKIKIENEHLKVKKADV-- 55
Query: 68 VLFQPYHPRNDDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVE 127
+ DE+ + K ++ VI+ N I D +++ + K+ GV
Sbjct: 56 --------SSLDEVCEVCKGADAVISAFN--PGWNNPDIYDETIKVYLTIIDGVKKAGVN 105
Query: 128 KFIHIS---ALNADPNPPTYYISGGSQFY--RTKYQGEKEVLREFPEA----TIFRPSDM 178
+F+ + +L P + K GE + E F P+
Sbjct: 106 RFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAAD 165
Query: 179 YGSGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIY 237
G + RY R + V G + V D AAA++ + P + +
Sbjct: 166 MRPGVRTGRY-----RLGKDDMIVDIVG----NSHISVEDYAAAMIDELEHPKHHQERF 215
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 73.5 bits (181), Expect = 1e-15
Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 30/222 (13%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ G++G +G L L QI R V + ++ V F +E+
Sbjct: 5 IVGSTGRVGKSLLKSLSTTDYQIYAGAR----KVEQVPQYNNVKAVHFD--VDWTPEEMA 58
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNAD--PN 140
K + + +IN+ G + ++ ++ +L + +++ V++FI +S + +
Sbjct: 59 KQLHGMDAIINVSG----SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPEK 114
Query: 141 PPTYYISGGSQFYRTKYQGEKEVLREFP-EATIFRPSDMYGSGDKFLRYYGHMWRHVFRK 199
+Y K+ + + +E + TI +P + +
Sbjct: 115 WIGAGFDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTE-EEATGLI----------- 162
Query: 200 LAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVG 241
+ + +GDVA I + GK+
Sbjct: 163 -----DINDEVSASNTIGDVADTIKELVMTDHSIGKVISMHN 199
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 65.7 bits (160), Expect = 2e-12
Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 15/229 (6%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYR----GNFYDVRDLRLCGDLG-QVLFQPYHPRN 77
+ G +GY+G + N G + +R N V+ L LG +++ +
Sbjct: 9 IVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD--D 66
Query: 78 DDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNA 137
+ A+K +VVI+ + + ++ +L KE G K S
Sbjct: 67 HQRLVDALKQVDVVISALAG-------GVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGM 119
Query: 138 DPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHVF 197
DP+ + + GS + K + + + T + G L
Sbjct: 120 DPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPR 179
Query: 198 RKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYL 246
K+ +Y G V DV + + DP K P L
Sbjct: 180 DKVLIYGDGNVKG-IWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNIL 227
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 61.9 bits (151), Expect = 1e-11
Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 33/218 (15%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII----PYRGNFYDVRDLRLC-GDLGQVLFQPYHPRN 77
+FGA+G G + + G ++ + R R + GD+
Sbjct: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDV----------LQ 57
Query: 78 DDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNA 137
++ K + + VI L+G + + E + K GV+K + ++
Sbjct: 58 AADVDKTVAGQDAVIVLLG---TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL 114
Query: 138 DPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHVF 197
+P + + K + + P G Y
Sbjct: 115 LWDPTKVPPRLQA-VTDDHIRMHKVLRESGLKYVAVMPP-HIGDQPLTGAY--------- 163
Query: 198 RKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGK 235
+ + D+ ++ + G
Sbjct: 164 ----TVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGH 197
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 62.6 bits (153), Expect = 2e-11
Identities = 47/258 (18%), Positives = 79/258 (30%), Gaps = 77/258 (29%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQII-IPYRGNFYDVRDLRLCGDLGQV--LFQPYHPRNDD 79
V GA+G +G + + + + +R + L D V + + P
Sbjct: 7 VTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLL-DSNAVHHIIHDFQP---- 61
Query: 80 EIRKAIKYSNVVIN--------LIGREFATKNFTIADA-NVEIPARLARLSKEMGVEKFI 130
+V+++ + A NV+ LA+ + +G I
Sbjct: 62 ---------HVIVHCAAERRPDV-----VENQPDAASQLNVDASGNLAKEAAAVGA-FLI 106
Query: 131 HIS------------ALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDM 178
+IS P P Y G +TK GEK VL A + R +
Sbjct: 107 YISSDYVFDGTNPPYREEDIPAPLNLY---G----KTKLDGEKAVLENNLGAAVLRIPIL 159
Query: 179 YGSGDK----FLRYYGHMWRHVFRKLAVYKKGEETIK-------QPVYVGDVAAAIVAAC 227
YG +K + +F K+ ++ P +V DVA
Sbjct: 160 YGEVEKLEESAVTV-------MFDKVQ---FSNKSANMDHWQQRFPTHVKDVATVCRQLA 209
Query: 228 K----DPDAAGKIYQAVG 241
+ DP G + G
Sbjct: 210 EKRMLDPSIKG-TFHWSG 226
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 61.1 bits (148), Expect = 2e-11
Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 37/233 (15%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ GA+G GS + + +G ++ VR+ + + D
Sbjct: 5 IIGATGRAGSRILEEAKNRGHEVTAI-------VRNAGKITQTHKDI-NILQKDIFDLTL 56
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHIS---ALNADP 139
+ NVV++ G + A+ +V L + + + + +L D
Sbjct: 57 SDLSDQNVVVDAYGI-----SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDE 111
Query: 140 NPPTYYISGGSQFYRTKYQGEKEVLREFPEA----------TIFRPSDMYGSGDKFLRYY 189
+ T S G Y + E T PS M+ G++ Y
Sbjct: 112 DGNTLLESKG--LREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGERTGDY- 168
Query: 190 GHMWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGP 242
+ L G + + D A A++ + P+ + + G
Sbjct: 169 ----QIGKDHLLFGSDG----NSFISMEDYAIAVLDEIERPNHLNEHFTVAGK 213
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 61.8 bits (150), Expect = 4e-11
Identities = 43/241 (17%), Positives = 79/241 (32%), Gaps = 27/241 (11%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYR-----GNFYDVRDLRLCGDLG-QVLFQPYHPR 76
+ GA+GY+G ++ G + R N + L G ++
Sbjct: 9 LIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID-- 66
Query: 77 NDDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALN 136
+ + +A+K +VVI+ T+ +E + + KE+G K S
Sbjct: 67 DHASLVEAVKNVDVVIS-----------TVGSLQIESQVNIIKAIKEVGTVKRFFPSEFG 115
Query: 137 ADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHV 196
D + + + + K + + + E T + G FLR
Sbjct: 116 NDVDNV-HAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGY---FLRSLAQAGLTA 171
Query: 197 F--RKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYL-LSELLDW 253
K+ + G + V D+ + A DP K P L L+EL+
Sbjct: 172 PPRDKVVILGDGNARV-VFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVAL 230
Query: 254 F 254
+
Sbjct: 231 W 231
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 58.5 bits (141), Expect = 2e-10
Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 31/231 (13%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
V GA+G GS + + ++G +++ VRD + D
Sbjct: 5 VLGATGRAGSAIVAEARRRGHEVLAV-------VRDPQKAADRLGATVATLVKEPLVLTE 57
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNA----- 137
+ + V++ + + + + +++ L L + + + +
Sbjct: 58 ADLDSVDAVVDALSVPWGSGRGYL---HLDFATHLVSLLRNSDTLAVFILGSASLAMPGA 114
Query: 138 ----DPNPPTYYISGGSQFYRTKYQGEKEVLREFPEA--TIFRPSDMYGSGDKFLRYYGH 191
+ P S E + L+ PS+ + SG
Sbjct: 115 DHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSEAFPSGP-------- 166
Query: 192 MWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGP 242
+ E + + G++A AI+ + P A
Sbjct: 167 --ATSYVAGKDTLLVGEDGQSHITTGNMALAILDQLEHPTAIRDRIVVRDA 215
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 56.0 bits (135), Expect = 2e-09
Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 47/232 (20%)
Query: 23 VFGASGYMGSYLCNKL-GKQGSQIII----PYRGNFYDVRDLRL-CGDLGQVLFQPYHPR 76
+ GA G + ++ N+L KQ + + P + + + ++ GD+
Sbjct: 28 ILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDV----------L 77
Query: 77 NDDEIRKAIKYSNVVI-NLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISAL 135
N +++A++ ++V NL G + + ++ A K V++ I + +L
Sbjct: 78 NHAALKQAMQGQDIVYANLTGEDLDIQANSVIAA-----------MKACDVKRLIFVLSL 126
Query: 136 NADPNPPTYYISGGSQF----YRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGH 191
P ++ + + + + E TI RP+ D
Sbjct: 127 GIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPA-WLTDED-------- 177
Query: 192 MWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDA-AGKIYQAVGP 242
+ + E V VAA I P+ G+ P
Sbjct: 178 -----IIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQP 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 2e-09
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 52/230 (22%)
Query: 70 FQPYHPRNDDEIRKAIKYSNVVINLIGREFAT--KNFTIADANVEIPAR-LARL------ 120
+ + N D++ I+ S + L E+ ++ + IP L+ +
Sbjct: 344 WDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 121 -SKEMGVEKFIHISALNADPNPPTYYISGGSQFYRTKYQGEKEV----------LREFPE 169
+ V K S + P T I + K + E + + F
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 170 ATIFRPS-DMYGSGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQP-VYVGD---VAAAIV 224
+ P D Y F + GH H L + E V++ D + I
Sbjct: 462 DDLIPPYLDQY-----FYSHIGH---H----LKNIEHPERMTLFRMVFL-DFRFLEQKIR 508
Query: 225 AACKDPDAAGKIYQAVGPKRYLLSELLD--WFHVVMKKGEPDYGYYRYDL 272
+A+G +L+ L ++ + +P Y +
Sbjct: 509 HDSTAWNASG----------SILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Score = 40.2 bits (93), Expect = 8e-04
Identities = 39/333 (11%), Positives = 86/333 (25%), Gaps = 111/333 (33%)
Query: 34 LCNKLGKQGSQII-----IPYRGNFYDVRDLRLCGDLGQVLFQPYHPRN----DDEIRKA 84
L ++ + I R + RL L + +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------LKSKPYENCLLVLLN----- 252
Query: 85 IKYSNVVINLIGREFA--------TKNFTIADA-------NVEIPARLARLSKEMGVE-- 127
++ + F T+ + D ++ + L+ +
Sbjct: 253 VQNAKAW-----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 128 -KFIHIS-------ALNADP------------NPPTYYISGGSQFYRTKYQGEKEVLREF 167
K++ L +P T+ ++ +K L
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------DNWK-HVNCDK--LTTI 358
Query: 168 PEATI--FRPSDMYGSGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVY-------VGD 218
E+++ P++ R +F +L+V+ I + +
Sbjct: 359 IESSLNVLEPAEY---------------RKMFDRLSVFPPSAH-IPTILLSLIWFDVIKS 402
Query: 219 VAAAIVAACKDPDAAGKIYQAVGPKRYLLSELLDWFHVVMKKGEPDY-------GYYRYD 271
+V K PK +S + + + K E +Y +Y
Sbjct: 403 DVMVVVNKLHKYSLVEK-----QPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 272 LRYDPVMPLKLFINGLFPGYPMGHL-TPERVER 303
+D + +++ F + HL E ER
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Score = 34.1 bits (77), Expect = 0.061
Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 47/150 (31%)
Query: 160 EKEVL--REFPEATIFRPSDMYGSGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVYVG 217
K +L E + S D W K EE +++ +V
Sbjct: 42 PKSILSKEEI--------DHIIMSKDAVSGTLRLFW--TLLS-----KQEEMVQK--FVE 84
Query: 218 DV--------AAAIVAACKDPDAAGKIYQAVGPKRYLLSELLDWFHVVMKKGEPDYGYYR 269
+V + I + P ++Y + Y +++ ++V
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------------ 132
Query: 270 YDLRYDPVMPLKLFINGLFPG-----YPMG 294
R P + L+ + L P +
Sbjct: 133 ---RLQPYLKLRQALLELRPAKNVLIDGVL 159
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 56.2 bits (135), Expect = 3e-09
Identities = 34/243 (13%), Positives = 68/243 (27%), Gaps = 19/243 (7%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQ--VLFQPYHPRNDDE 80
+ GA+G++G ++ I R ++ L + +
Sbjct: 15 IAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEA 74
Query: 81 IRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNADPN 140
+ K +K + I ++ T+ ++ L + K +G K S D N
Sbjct: 75 MEKILKEHEIDI-VV--------STVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVN 125
Query: 141 PPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHVF--R 198
+ G YR K + + V T + + H +
Sbjct: 126 RAD-PVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASW---PYYNNIHPSEVLPPTD 181
Query: 199 KLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYL-LSELLDWFHVV 257
+Y G V D+ + D K L ++EL +
Sbjct: 182 FFQIYGDGNVKA-YFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKK 240
Query: 258 MKK 260
+ +
Sbjct: 241 IGR 243
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 54.5 bits (131), Expect = 1e-08
Identities = 41/240 (17%), Positives = 72/240 (30%), Gaps = 24/240 (10%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII---PYRGNFYDVRDLRLCGDLGQ--VLFQPYHPRN 77
+ G +G +G ++ K G+ L + V+ +
Sbjct: 7 ILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND 66
Query: 78 DDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNA 137
+ + KAIK ++VI +E ++ + KE G K S
Sbjct: 67 HETLVKAIKQVDIVIC-----------AAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGL 115
Query: 138 DPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHVF 197
D + + Q + K + + E T FLR +
Sbjct: 116 DVDRHDA-VEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFT---GYFLRNLAQLDATDP 171
Query: 198 --RKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYL-LSELLDWF 254
K+ + G V DV + A DP+ K PK YL +E++ +
Sbjct: 172 PRDKVVILGDGNVKG-AYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALW 230
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 53.4 bits (128), Expect = 3e-08
Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 21/241 (8%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQP-YHPRNDDEI 81
+FG +GY+G+++ K G + R N L LG ++ + +++
Sbjct: 16 IFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELD--EHEKL 73
Query: 82 RKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNADPNP 141
+ +K +VVI+ +A + ++ K G K S + +
Sbjct: 74 VELMKKVDVVIS-----------ALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDR 122
Query: 142 PTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHVFRKLA 201
+ K + + T + F+ Y + ++
Sbjct: 123 IN-ALPPFEALIERKRMIRRAIEEANIPYTYVSANCFA---SYFINYLLRPY-DPKDEIT 177
Query: 202 VYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYL-LSELLDWFHVVMKK 260
VY GE Y D+ + DP A ++ + EL+ + + K
Sbjct: 178 VYGTGEAKF-AMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGK 236
Query: 261 G 261
Sbjct: 237 K 237
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 52.5 bits (127), Expect = 4e-08
Identities = 51/251 (20%), Positives = 85/251 (33%), Gaps = 79/251 (31%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ GA+G +G + +L + ++I DV+DL D+ N +
Sbjct: 17 ITGANGQLGREIQKQLKGKNVEVI------PTDVQDL----DI----------TNVLAVN 56
Query: 83 KAIKYS--NVVINLIGREFAT---------KNFTIADA-NVEIPARLARLSKEMGVEKFI 130
K NVVIN + + +A N P LA + +G + +
Sbjct: 57 KFFNEKKPNVVIN------CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIV 109
Query: 131 HIS-------------ALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSD 177
IS + NP + Y G +TK +GE V P+ I R +
Sbjct: 110 QISTDYVFDGEAKEPITEFDEVNPQSAY---G----KTKLEGENFVKALNPKYYIVRTAW 162
Query: 178 MYGSGDKFLRYYGHMWRHVFRKLAVYKKGEETIK-------QPVYVGDVAAAIVAACKDP 230
+YG G+ F++ M L K + +K P D+A ++ D
Sbjct: 163 LYGDGNNFVK---TMIN-----LG---KTHDELKVVHDQVGTPTSTVDLARVVLKVI-DE 210
Query: 231 DAAGKIYQAVG 241
G +
Sbjct: 211 KNYG-TFHCTC 220
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 52.6 bits (126), Expect = 4e-08
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 31/249 (12%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYR--------GNFYDVRDLRLCGDLGQVLFQPYH 74
++G +GY+G ++ I R + + R G V
Sbjct: 9 IYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMG----VTIIEGE 64
Query: 75 PRNDDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISA 134
+++ +K ++VI+ + + + K G K S
Sbjct: 65 MEEHEKMVSVLKQVDIVIS-----------ALPFPMISSQIHIINAIKAAGNIKRFLPSD 113
Query: 135 LNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWR 194
+ + + K + + T + F+ Y H
Sbjct: 114 FGCEEDRIK-PLPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAY---FVNYLLHPSP 169
Query: 195 HVF--RKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYL-LSELL 251
H + +Y GE Y D+A + DP +I PK + +EL+
Sbjct: 170 HPNRNDDIVIYGTGETKF-VLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELI 228
Query: 252 DWFHVVMKK 260
+
Sbjct: 229 SLWEAKSGL 237
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 51.8 bits (124), Expect = 8e-08
Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 54/248 (21%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ GA G++G L L I ++E+
Sbjct: 5 ITGAKGFVGKNLKADLTSTTDHHIFEV-HRQ----------------------TKEEELE 41
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHI-SALNADPNP 141
A+ ++ +++L G + + NV + + + I + S++ A +
Sbjct: 42 SALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDN 101
Query: 142 PTYYISGGSQFY-RTKYQGEKEVLREFPE-----ATIFRPSDMYGSGDKFLRYYGHMWRH 195
P Y +K QGE ++LRE+ E I+R +++G +
Sbjct: 102 P----------YGESKLQGE-QLLREYAEEYGNTVYIYRWPNLFGK-----WCKPNYNSV 145
Query: 196 VFRKLAVYKKGEE-TIKQP------VYVGDVAAAIVAAC-KDPDAAGKIYQAVGPKRYLL 247
+ + EE + YV D+ A I A P + + L
Sbjct: 146 IATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTL 205
Query: 248 SELLDWFH 255
E++D +
Sbjct: 206 GEIVDLLY 213
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 51.4 bits (124), Expect = 8e-08
Identities = 55/256 (21%), Positives = 82/256 (32%), Gaps = 80/256 (31%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+FG +G +G L L G+ I DV CGD N +
Sbjct: 5 LFGKTGQVGWELQRSLAPVGNLI-------ALDVHSKEFCGDFS----------NPKGVA 47
Query: 83 KAIKYS--NVVINL----------IGREFATKNFTIADANVEIPARLARLSKEMGVEKFI 130
+ ++ +V++N E A N +A+ + E G +
Sbjct: 48 ETVRKLRPDVIVNAAAHTAVDKAESEPELAQL------LNATSVEAIAKAANETGA-WVV 100
Query: 131 HIS-------------ALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSD 177
H S +P Y G +TK GEK + P+ IFR S
Sbjct: 101 HYSTDYVFPGTGDIPWQETDATSPLNVY---G----KTKLAGEKALQDNCPKHLIFRTSW 153
Query: 178 MYGS-GDKFLRYYGHMWRHVFRKLAVYKKGEETIK----Q---PVYVGDVAAAIVAA--- 226
+Y G+ F + M R LA K +T+ Q P +A A
Sbjct: 154 VYAGKGNNFAK---TMLR-----LA---KERQTLSVINDQYGAPTGAELLADCTAHAIRV 202
Query: 227 -CKDPDAAGKIYQAVG 241
P+ AG +Y V
Sbjct: 203 ALNKPEVAG-LYHLVA 217
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 50.0 bits (119), Expect = 2e-07
Identities = 27/224 (12%), Positives = 56/224 (25%), Gaps = 31/224 (13%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ GA+G + L L I Y + + + +N +
Sbjct: 10 ILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEG-SFQNPGXLE 68
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNADPNPP 142
+A+ + VV + A + + + + I +S P
Sbjct: 69 QAVTNAEVVFVGAM------------ESGSDMASIVKALSRXNIRRVIGVSMAGLSGEFP 116
Query: 143 TYYIS-----GGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHMWRHVF 197
+ + + Q + TI R + +Y +
Sbjct: 117 VALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRLTWLYNDPEX------------- 163
Query: 198 RKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVG 241
+ +G + V V AI D ++G
Sbjct: 164 TDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIG 207
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 49.4 bits (119), Expect = 4e-07
Identities = 50/256 (19%), Positives = 81/256 (31%), Gaps = 88/256 (34%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ GA+G +G L +L + I +D + L D+ N +++
Sbjct: 10 ITGANGQLGKQLQEELNPEEYDIY------PFDKKLL----DI----------TNISQVQ 49
Query: 83 KAIKYS--NVVINLIGREFAT---------KNFTIADA-NVEIPARLARLSKEMGVEKFI 130
+ ++ +++I+ K +A N +A S+ +G K +
Sbjct: 50 QVVQEIRPHIIIH------CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLV 102
Query: 131 HIS-------------ALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSD 177
+IS +P P Y G +KY GE+ V + I R S
Sbjct: 103 YISTDYVFQGDRPEGYDEFHNPAPINIY---G----ASKYAGEQFVKELHNKYFIVRTSW 155
Query: 178 MYGSGDKFLRYYGH-----MWRHVFRKLAVYKKGEETIK-------QPVYVGDVAAAIVA 225
+YG YG+ M R L K E I P YV D+ I
Sbjct: 156 LYGK-------YGNNFVKTMIR-----LG---KEREEISVVADQIGSPTYVADLNVMINK 200
Query: 226 ACKDPDAAGKIYQAVG 241
G Y
Sbjct: 201 LI-HTSLYG-TYHVSN 214
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 48.3 bits (116), Expect = 8e-07
Identities = 51/248 (20%), Positives = 80/248 (32%), Gaps = 72/248 (29%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ GASG +G L L ++ I + L DL + +
Sbjct: 5 ITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKL----DL----------TDFPRLE 50
Query: 83 KAIKYS--NVVINL----------IGREFATKNFTIADANVEIPARLARLSKEMGVEKFI 130
I +V+IN I +E A K N E + R K + +
Sbjct: 51 DFIIKKRPDVIINAAAMTDVDKCEIEKEKAYK------INAEAVRHIVRAGKVIDS-YIV 103
Query: 131 HIS------------ALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDM 178
HIS PNP YY G +K GE L+ ++ I R S +
Sbjct: 104 HISTDYVFDGEKGNYKEEDIPNPINYY--G-----LSKLLGETFALQ--DDSLIIRTSGI 154
Query: 179 YGSGDKFLRYYGHMWRHVFRKLAVYKKGEET--IKQ---PVYVGDVAAAIVAACKDPDAA 233
+ F Y +++ K+G+ K P+ +A+AI+ +
Sbjct: 155 FR-NKGFPIY---VYK-----TL--KEGKTVFAFKGYYSPISARKLASAILELLE-LRKT 202
Query: 234 GKIYQAVG 241
G I G
Sbjct: 203 G-IIHVAG 209
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 45.1 bits (106), Expect = 1e-05
Identities = 40/283 (14%), Positives = 83/283 (29%), Gaps = 45/283 (15%)
Query: 20 VATVFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDL--RLCGDLGQVLFQPYHP-- 75
VA + G +G +G+ L L G + V + R + Y
Sbjct: 3 VALIVGVTGIIGNSLAEILPLAD------TPGGPWKVYGVARRTRPAWHEDNPINYVQCD 56
Query: 76 -RNDDEIRKAIKYSNVVINLIGREFATKNF--TIADANVEIPARL--ARLSKEMGVEKFI 130
+ D+ + + V ++ +A ++ +AN ++ + A + ++
Sbjct: 57 ISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116
Query: 131 HISALNADPNPPTYYISGGSQF------------YRTKYQGEKEVLREFPEA-----TIF 173
+ P Y S Y E +L E + ++
Sbjct: 117 LQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSVH 176
Query: 174 RPSDMYGSGD-------KFLRYYGHMWRHVFRKLAVYKKGE--ETIKQPVYVGDVAAAIV 224
RP +++G L Y + +H + L + +A +
Sbjct: 177 RPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHI 236
Query: 225 AACKDPDAAGKIYQAVGPK----RYLLSELLDWFHVVMKKGEP 263
A DP A + + ++ L + F V + E
Sbjct: 237 WAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEE 279
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 43.1 bits (102), Expect = 4e-05
Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 55/244 (22%)
Query: 22 TVFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVR------------DLRLCG------ 63
VFG +G G + L + G+ + VR +LRL G
Sbjct: 9 VVFGGTGAQGGSVARTLLEDGT----------FKVRVVTRNPRKKAAKELRLQGAEVVQG 58
Query: 64 DLGQVLFQPYHPRNDDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPA--RLARLS 121
D + + A+ + T + E+ LA L+
Sbjct: 59 DQD----------DQVIMELALNGAYATF------IVTNYWESCSQEQEVKQGKLLADLA 102
Query: 122 KEMGVEKFIHISALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFP-EATIFRPSDMYG 180
+ +G+ ++ N + + K + E E R+ T R +
Sbjct: 103 RRLGLHYVVYSGLENIKKLTAGRL---AAAHFDGKGEVE-EYFRDIGVPMTSVRLPCYF- 157
Query: 181 SGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDA-AGKIYQA 239
+ L ++ + + + + V D+ +++ K P+ G+
Sbjct: 158 --ENLLSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGL 215
Query: 240 VGPK 243
+
Sbjct: 216 STCR 219
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 42.0 bits (99), Expect = 1e-04
Identities = 35/264 (13%), Positives = 70/264 (26%), Gaps = 78/264 (29%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQI-------------IIPYRGNFYDVRDL-RLCGDLGQV 68
+ G G +G L +L QG ++ + + L + ++
Sbjct: 8 IAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEI 66
Query: 69 LFQ--PYHPRNDDEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGV 126
L +D+ R + VE + +
Sbjct: 67 LVYCVAASEYSDEHYRL-------------------------SYVEGLRNTLSALEGAPL 101
Query: 127 EKFIHISALNA------------DPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFR 174
+ +S+ P + + + E +L + +TI R
Sbjct: 102 QHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSG------KRMLEAEA-LLAAYS-STILR 153
Query: 175 PSDMYGSGDKFLRYYGHMWRHVFRKLAVYKKGEETIKQP---VYVGDVAAAIVAACKDPD 231
S +YG G R + A + ++ D AA I +
Sbjct: 154 FSGIYGPG-----------RLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRS 202
Query: 232 AA--GKIYQAVGPKRYLLSELLDW 253
A ++Y + + +LL W
Sbjct: 203 HAVPERLYIVTDNQPLPVHDLLRW 226
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 40.7 bits (96), Expect = 3e-04
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 17/130 (13%)
Query: 122 KEMGVEKFIHISALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGS 181
K GV+ + S L+AD +P + EK + T+ R Y
Sbjct: 92 KAAGVKFIAYTSLLHADTSPLG--------LADEHIETEKMLADSGIVYTLLRNG-WYS- 141
Query: 182 GDKFLRYYGHMWRH-VFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAV 240
+ +L H VF G+ D AAA + GK+Y+
Sbjct: 142 -ENYLASAPAALEHGVFI--GAAGDGKIA---SATRADYAAAAARVISEAGHEGKVYELA 195
Query: 241 GPKRYLLSEL 250
G + L++L
Sbjct: 196 GDSAWTLTQL 205
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 40.0 bits (94), Expect = 5e-04
Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 14/129 (10%)
Query: 122 KEMGVEKFIHISALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGS 181
++ GV+ + A+ + E + T R + +Y
Sbjct: 95 RDAGVKHIAYTGYAFAEESIIP--------LAHVHLATEYAIRTTNIPYTFLRNA-LYT- 144
Query: 182 GDKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVG 241
D F+ + G V ++A A + K Y V
Sbjct: 145 -DFFVNEGLRASTESGAIVTNAGSGIVN---SVTRNELALAAATVLTEEGHENKTYNLVS 200
Query: 242 PKRYLLSEL 250
+ + EL
Sbjct: 201 NQPWTFDEL 209
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 39.2 bits (92), Expect = 0.001
Identities = 41/248 (16%), Positives = 81/248 (32%), Gaps = 44/248 (17%)
Query: 25 GASGYMGSYLCNKLGKQGSQIII------PYRGNFYDVRDLRLCGDLGQVLFQPYHPRND 78
G +G++GS L L K +++ ++ N +VR L F RN
Sbjct: 34 GVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNL 93
Query: 79 DEIRKAIKYSNVVINL---IGREFATKN-FTIADANVEIPARLARLSKEMGVEKFIHIS- 133
D+ A + V++ + + T N++ + +++ V+ F + +
Sbjct: 94 DDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS 153
Query: 134 --------AL----NADPNPPTYYISGGSQFYRTKYQGEKEVLREFP-----EATIFRPS 176
L + P + Y TKY E F R
Sbjct: 154 SSTYGDHPGLPKVEDTIGKPLSPYAV-------TKYVNE-LYADVFSRCYGFSTIGLRYF 205
Query: 177 DMYGS-GDKFLRYYGHMWRHVFRKLA-----VYKKGEETIKQPVYVGDVAAAIVAAC-KD 229
+++G D Y + + + + GE + + Y+ + A + A
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETS-RDFCYIENTVQANLLAATAG 264
Query: 230 PDAAGKIY 237
DA ++Y
Sbjct: 265 LDARNQVY 272
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 38.5 bits (90), Expect = 0.002
Identities = 47/292 (16%), Positives = 89/292 (30%), Gaps = 85/292 (29%)
Query: 25 GASGYMGSYLCNKLGKQGSQIII-------PYRGNFYDVRDLRLCGDLGQVLFQPYHPRN 77
G+SG +G+ L L ++ + + G + D+ N
Sbjct: 6 GSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFIT-----LDV----------SN 50
Query: 78 DDEIRKAIKYSNV--VINL--IGREFATKNFTIA-DANVEIPARLARLSKEMGVEKFIHI 132
DEI +A++ ++ + +L I K+ +A N+ + +K+ VEK +
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIP 110
Query: 133 SALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYG----SGDKFLRY 188
S + G + E + P TI RP M+G + + +Y
Sbjct: 111 S-------------TIGV------FGPETPKNK-VPSITITRPRTMFGVTKIAAELLGQY 150
Query: 189 YGHMW-------R--------------------HVFRKLAVYKK-----GEETIKQPVYV 216
Y + R +F +K +Y+
Sbjct: 151 YYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYM 210
Query: 217 GDVAAAIVAACKDPDAAGKIYQA--VGPKRYLLSELLDWFHVVMKKGEPDYG 266
D A+V + + V + SEL + + E +Y
Sbjct: 211 PDALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYK 262
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 38.0 bits (89), Expect = 0.002
Identities = 24/122 (19%), Positives = 35/122 (28%), Gaps = 16/122 (13%)
Query: 122 KEMGVEKFIHISALNADPNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGS 181
K+ GV I I N P + + + T R + MY
Sbjct: 94 KQSGVAHIIFIGYYADQHNNP-------FHMSPYFGYASRLLSTSGIDYTYVRMA-MYM- 144
Query: 182 GDKFLRYYGHMWRH-VFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAV 240
D Y + G + D+A ++A K+PD GK Y
Sbjct: 145 -DPLKPYLPELMNMHKLI--YPAGDGRIN---YITRNDIARGVIAIIKNPDTWGKRYLLS 198
Query: 241 GP 242
G
Sbjct: 199 GY 200
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 38.4 bits (89), Expect = 0.002
Identities = 54/327 (16%), Positives = 98/327 (29%), Gaps = 102/327 (31%)
Query: 22 TVF--GASGYMGSYLCNKLGKQGS---QIIIPYRGN--------------FYDVRDLR-- 60
TV GA+G++G YL +L ++ ++I R D LR
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHF 134
Query: 61 ----------LCGDLGQVLF----QPYHPRNDDEIRKAIKYSNVVINLIGREFATKNF-- 104
+ GD + + + + + +++++ A N
Sbjct: 135 KELAADRLEVVAGDKSEPDLGLDQPMW-----RRLAETV---DLIVDS-A---AMVNAFP 182
Query: 105 --TIADANVEIPARLARLSKEMGVEKFIHIS---------------ALNADPNPPTYYIS 147
+ NV A L R++ ++ F ++S + PT +
Sbjct: 183 YHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVD 242
Query: 148 GGSQF-Y-RTKYQGEKEVLREFPE-----ATIFRPSDMYGSGDK--FLRYYGHMWR---- 194
GG Y +K+ GE +LRE + +FR + L + R
Sbjct: 243 GGWAGGYGTSKWAGEV-LLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS 301
Query: 195 ----HVFRKLAVYKKGEETIKQPVY----VGDVAAAIVAAC----KDPDAAGKIYQAVGP 242
+ + E ++ + V VA AI A Y + P
Sbjct: 302 LMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNP 361
Query: 243 KRYLLS--ELLDWFHVVMKKGEPDYGY 267
+ E +DW + GY
Sbjct: 362 HDDGIGLDEYVDWLI--------EAGY 380
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 36.8 bits (86), Expect = 0.007
Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 59/258 (22%)
Query: 25 GASGYMGSYLCNKLGKQGSQIII------PYRGNFY--DVRDLRLCGDLGQVLFQPYHPR 76
G +G++G Y+ + G+ II N Y V D
Sbjct: 9 GGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT---------------- 52
Query: 77 NDDEIRKAIKYSNVVINL---IGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHIS 133
+++ + + V++L G + F N + L E + ++ S
Sbjct: 53 -LEDLINQLNDVDAVVHLAATRGSQGKISEF---HDNEILTQNLYDACYENNISNIVYAS 108
Query: 134 ------ALNADPNPPTYYISGGSQFY-RTKYQGEKEVLREFP-----EATIFRPSDMYG- 180
+ P Y +K E + + R + +YG
Sbjct: 109 TISAYSDETSLPWNEKELPLPDL-MYGVSKLACE-HIGNIYSRKKGLCIKNLRFAHLYGF 166
Query: 181 ----SG--DKFLRYYGHMWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAG 234
+ ++F R + +L ++ ++ +Y D A +++ A +
Sbjct: 167 NEKNNYMINRFFR---QAFHG--EQLTLHANSVAK-REFLYAKDAAKSVIYAL-KQEKVS 219
Query: 235 KIYQAVGPKRYLLSELLD 252
+ E+ +
Sbjct: 220 GTFNIGSGDALTNYEVAN 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.009
Identities = 33/247 (13%), Positives = 65/247 (26%), Gaps = 110/247 (44%)
Query: 20 VATVFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDD 79
+ +FG G Y +LR L+Q YH D
Sbjct: 156 LVAIFGGQGNTDDYF----------------------EELRD-------LYQTYHVLVGD 186
Query: 80 EIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNADP 139
I+ + + + LI + ++ + + +++ N
Sbjct: 187 LIKFS---AETLSELIRTTLDAEKV---------------FTQGLNILEWLE----NPSN 224
Query: 140 NPPTYY-----IS----GGSQF--YRT--KYQGEKEVLREFPEATIFRPSDMYGSGDKFL 186
P Y IS G Q Y K G F P ++
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-------------FTPGEL-------- 263
Query: 187 RYYGHMWRHVFRKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYL 246
R + + +G + V A +A ++ + +V ++ +
Sbjct: 264 -------RSYLKGATGHSQG---L--------VTAVAIAETDSWESF---FVSV--RKAI 300
Query: 247 LSELLDW 253
+L +
Sbjct: 301 --TVLFF 305
Score = 35.4 bits (81), Expect = 0.022
Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 74/213 (34%)
Query: 112 EIPARLARLSKEMGVEKFIHISALNADPN-----PPT--YYI----------SGGSQFYR 154
++ + + + + K + IS +N N PP Y + SG Q R
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SR 406
Query: 155 TKYQGEKEVLR-EF-PEATIFRP--SD-MYGSGDKFLRYYGHMWRHVFRKLAVYKKGEET 209
+ K F P + P S + + D + + + + +
Sbjct: 407 IPFSERKLKFSNRFLP---VASPFHSHLLVPASDLIN-------KDLVKNNVSFNAKD-- 454
Query: 210 IKQPVY-----------VGDVAAAIV-AACKDP---DAA-------------GKIYQAVG 241
I+ PVY G ++ IV + P + G +G
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA-SGLG 513
Query: 242 PKRYLLSELLD--WFHVVM-----KKGEPDYGY 267
L D V++ + DYG+
Sbjct: 514 V---LTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 31.2 bits (70), Expect = 0.49
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 54/172 (31%)
Query: 41 QGSQIIIPYRG---NFYD----VRDLRLCGDLGQVLFQPYHPRNDDEIRKAIKYSNVVIN 93
QGSQ +G + Y +D ++ R D+ + +S I
Sbjct: 1624 QGSQ----EQGMGMDLYKTSKAAQD----------VWN----RADNHFKDTYGFS---IL 1662
Query: 94 LIGREF---ATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNADPNPPTYYISGGS 150
I T +F I + + E V+ + + + N + +
Sbjct: 1663 DIVINNPVNLTIHFGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--- 1718
Query: 151 QFYRTKYQGEKEVLR--EF--P-----EATIFRPSDMYGSGDKFLRYY--GH 191
++ EK +L +F P E F D+ G GH
Sbjct: 1719 ------FRSEKGLLSATQFTQPALTLMEKAAFE--DLKSKGLIPADATFAGH 1762
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 33.3 bits (77), Expect = 0.078
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQA--VG-PKRYLLSELLDWFHVVM-KKGEPDYGYYR 269
+YV D A +AA K + + A VG + ++ V+ + E
Sbjct: 204 LYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPST 263
Query: 270 YDLRYDP 276
D R P
Sbjct: 264 PDGRGWP 270
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 32.7 bits (75), Expect = 0.13
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ GA G++ S++ +L +G +I + + C + F R +
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE-----FHLVDLRVMENCL 88
Query: 83 KAIKYSNVVINL------IGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHIS 133
K + + V NL +G + + + + N I + ++ G+++F + S
Sbjct: 89 KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMIEAARINGIKRFFYAS 144
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 32.5 bits (75), Expect = 0.14
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
+ +A V G G +G+ +C +L K G +++ N
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPN 47
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 31.9 bits (73), Expect = 0.22
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 36/173 (20%)
Query: 25 GASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVR-DLRLC-GDLGQVLFQPYHPRNDDEIR 82
GA+G +G + +L + + + DL + + +
Sbjct: 10 GAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDL----------ADANAVN 59
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNADPNPP 142
+ + +++L G I N+ L ++ G + + S
Sbjct: 60 AMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFAS--------- 110
Query: 143 TYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYG----SGDKFLRYYGH 191
+ G RP +YG G+ R Y
Sbjct: 111 ------SNHTI-----GYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFD 152
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 31.8 bits (72), Expect = 0.22
Identities = 14/79 (17%), Positives = 28/79 (35%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYH 74
S G A V +G +G L +G+++++ R +V
Sbjct: 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE 175
Query: 75 PRNDDEIRKAIKYSNVVIN 93
+D +A+K ++ V
Sbjct: 176 TADDASRAEAVKGAHFVFT 194
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 31.4 bits (72), Expect = 0.26
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 10 TGGRSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
G + F V G + +G + +L G ++ + +RG+
Sbjct: 7 EGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS 49
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 31.5 bits (72), Expect = 0.29
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 11/55 (20%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSE-LLDWFHVV--MKKGEPDY 265
V D+ + P +R + DW V+ +K P
Sbjct: 247 VSAVDIGLLHLGCLVLPQIER--------RRVYGTAGTFDWNTVLATFRKLYPSK 293
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 31.4 bits (72), Expect = 0.30
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSELLDWFHVVMKKGEPDYG 266
Y+ DV +VA P + + +++++ E
Sbjct: 211 TYITDVVDKLVALANRP--LPSVVNFGSGQSLSVNDVIRILQATSPAAEVARK 261
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 31.4 bits (70), Expect = 0.37
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ G+ G++ + L G ++ + +L + +D +
Sbjct: 8 MLGS-GFVTRPTLDVLTDSGIKVTV---ACRTLESAKKLSAGVQHSTPISLDVNDDAALD 63
Query: 83 KAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLS 121
+ ++VI+LI T + T+ + + + S
Sbjct: 64 AEVAKHDLVISLI---PYTFHATVIKSAIRQKKHVVTTS 99
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 31.0 bits (71), Expect = 0.43
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 7 KKGTGGRSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYR 50
+G G G A V GA+G +G + QG+ + +
Sbjct: 16 TQGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGT 59
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A
{Burkholderia pseudomallei 1710B}
Length = 269
Score = 31.0 bits (71), Expect = 0.45
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 7 KKGTGGRSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
+ G S VA V G G +G+ + +L G + + +
Sbjct: 14 AQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER 59
>2lc2_A AVR3A4; four helix bundle, RXLR effector, plant immunity, protein
BI; NMR {Phytophthora capsici}
Length = 108
Score = 29.5 bits (65), Expect = 0.46
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 198 RKLAVYKKGEETIKQPVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSELLDWFHVV 257
R L V+ + + + + V A DP+ A ++Y+ K Y L+++ ++
Sbjct: 31 RLLRVHHESDTEERGFLEKAAVKKMAKAIMADPNKADEVYKKWADKGYTLTQMSNFLK-S 89
Query: 258 MKKGEPDYGYYRYDLRYD 275
G+ D Y Y + D
Sbjct: 90 KTAGKYDRVYNGYVIHLD 107
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 30.6 bits (69), Expect = 0.47
Identities = 40/248 (16%), Positives = 74/248 (29%), Gaps = 53/248 (21%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
FG GY L L QG +II R N + +R G P
Sbjct: 10 SFGH-GYTARVLSRALAPQGWRIIGTSR-NPDQMEAIRASG---------AEPLLWPGEE 58
Query: 83 KAIKYSNVVINLI----GREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNAD 138
++ ++ G + A ++ ++S
Sbjct: 59 PSLDGVTHLLISTAPDSGGDPVLAALGDQIA-----------ARAAQFRWVGYLSTTAVY 107
Query: 139 PNPPTYYIS------GGSQFYRTKYQGEKEVLREFP-EATIFRPSDMYGSGDKFLRYYGH 191
+ ++ + R + E++ +FR + +YG G
Sbjct: 108 GDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPLHVFRLAGIYGPG--------- 158
Query: 192 MWRHVFRKLAVYKKGEETIKQP------VYVGDVAAAIVAACKDPDAAGKIYQAVGPKRY 245
R F KL K G I +P ++V D+A + A+ P G +Y +
Sbjct: 159 --RGPFSKLG--KGGIRRIIKPGQVFSRIHVEDIAQVLAASMARP-DPGAVYNVCDDEPV 213
Query: 246 LLSELLDW 253
+++ +
Sbjct: 214 PPQDVIAY 221
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme
iron, cysteine catabolism, oxidoreductase; 2.70A
{Pseudomonas aeruginosa}
Length = 211
Score = 30.4 bits (68), Expect = 0.51
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 215 YVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSELL---DWFHVVMKKGEPDYGYYRYD 271
++G++A + + + + LL+EL+ DW + +P Y +Y
Sbjct: 13 FIGELATLLDSRPDESTLLAQA-------HPLLAELVHQDDWLPEDCARPDPQ-RYQQYL 64
Query: 272 LRYDPVMPLKLFINGLFPG 290
L D + PG
Sbjct: 65 LHVDSRQRFSVVSFVWGPG 83
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 30.4 bits (69), Expect = 0.61
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 25 GASGYMGSYLCNKLGKQGSQIII------PYRGNFYDVRDLRLCGDLGQVLFQPYHPRND 78
GA+G +GS + LG ++ + ++ + DL +
Sbjct: 9 GAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEI----VACDL----------ADA 54
Query: 79 DEIRKAIKYSNVVINLIGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHIS 133
+ +K + +I+L G I AN+ L ++ +G + + S
Sbjct: 55 QAVHDLVKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 30.7 bits (70), Expect = 0.62
Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 83/256 (32%)
Query: 25 GASGYMGSYLCNKLGKQGSQII------------IPYRGNFY----DVRDLRLCGDLGQV 68
G G +GS++ L ++G +++ + N + D L L
Sbjct: 28 GICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQL--- 84
Query: 69 LFQPYHPRNDDEIRKAIKYSNVVINLIGREFA--TKN----FTIADANVEIPARLARLSK 122
P + V++ A K+ + N + + + +K
Sbjct: 85 -IGDLQP-------------DAVVHT-----AASYKDPDDWYNDTLTNCVGGSNVVQAAK 125
Query: 123 EMGVEKFIHIS--------------ALNADPNPPTYYISGGSQFY-RTKYQGEKEVLREF 167
+ V +F++ L+ NP Y +K E L
Sbjct: 126 KNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANS-------SYAISKSANED-YLEYS 177
Query: 168 P-EATIFRPSDMYGSGDKFLRYYGHMWRHVFRKLAVYKKGEETI--KQP---VYVGDVAA 221
+ FR +++ G R + +G++ K V+V D+A
Sbjct: 178 GLDFVTFRLANVVGP-----RNVSGP---LPIFFQRLSEGKKCFVTKARRDFVFVKDLAR 229
Query: 222 AIVAACKDPDAAGKIY 237
A V A Y
Sbjct: 230 ATVRAVD--GVGHGAY 243
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 30.4 bits (69), Expect = 0.81
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIR 82
+ G+ G +G L +L G ++I R ++ + G+ + P +P +D
Sbjct: 152 ITGSRGLVGRALTAQLQTGGHEVIQLVR------KEPK----PGKRFWDPLNPASD---- 197
Query: 83 KAIKYSNVVINLIG 96
+ ++V+++L G
Sbjct: 198 -LLDGADVLVHLAG 210
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 29.8 bits (68), Expect = 1.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
G V+ V G++ +G + KL GS +II
Sbjct: 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSG 41
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 29.4 bits (67), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
G A V G+S +G + KLG G+ I++
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPA 39
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 29.5 bits (67), Expect = 1.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
+A V GAS +G + +L G+++ + Y +
Sbjct: 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASS 62
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 29.5 bits (67), Expect = 1.1
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 25 GASGYMGSYLCNKLGKQGSQIIIP------YRGNFYDVRDLRLCGDLGQVLFQPYHPRND 78
G +G++GS L KL K +I ++ N +V+ L + F R+
Sbjct: 32 GVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDL 91
Query: 79 DEIRKAIKYSNVVINL 94
+ +K + V++
Sbjct: 92 TTCEQVMKGVDHVLHQ 107
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYH---PRNDD 79
+ G +G++G++L +L ++ + D+ + L F + +
Sbjct: 320 ILGVNGFIGNHLTERLLREDHYEVYG-----LDIGSDAISRFLNHPHFHFVEGDISIHSE 374
Query: 80 EIRKAIKYSNVVINLIG 96
I +K +VV+ L+
Sbjct: 375 WIEYHVKKCDVVLPLVA 391
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 29.4 bits (67), Expect = 1.3
Identities = 45/251 (17%), Positives = 88/251 (35%), Gaps = 65/251 (25%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQII-----------IPYRGNFYDVRDLRLCGDLGQVLFQ 71
V G +G++GS++ +KL + ++ + DL
Sbjct: 6 VTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAARLVK-------ADL------ 52
Query: 72 PYHPRNDDEIRKAIKYSNVVINLIG----REFATKNFTIADANVEIPARLARLSKEMGVE 127
D+I+ +K + V ++ R A I NV RL ++ GV
Sbjct: 53 -----AADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS 107
Query: 128 KFIHIS--AL--NADPNP-----PTYYISGGSQFY-RTKYQGEKEVLREFPEA-----TI 172
+ + S + A P PT+ IS Y +K E ++ + I
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPTHPIS----LYGASKLACEA-LIESYCHTFDMQAWI 162
Query: 173 FRPSDMYGSGDKFLRYYGHMWRHVFR------KLAVYKKGEETIKQPVYVGDVAAAIVAA 226
+R +++ G +G ++ + + +L + GE K +Y+ D A++
Sbjct: 163 YRFANVIGRRST----HGVIYDFIMKLKRNPEELEILGNGE-QNKSYIYISDCVDAMLFG 217
Query: 227 CKDPDAAGKIY 237
+ D I+
Sbjct: 218 LRG-DERVNIF 227
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas;
oxidoreductase; 1.99A {Streptomyces coelicolor}
Length = 253
Score = 29.1 bits (66), Expect = 1.4
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
S V G + +G + G ++ I YR
Sbjct: 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG 55
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 29.0 bits (66), Expect = 1.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYR 50
G + + GAS +GS + L K GS++II
Sbjct: 11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGS 46
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 29.6 bits (67), Expect = 1.5
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQ-AVGPKRYLLSELLDWFHVVMKKGEPDYGYYRYDL 272
VYVGDVA + ++ I+ G + + D KKG+ +Y + L
Sbjct: 259 VYVGDVADVNLWFLENGV--SGIFNLGTG-RAESFQAVADATLAYHKKGQIEYIPFPDKL 315
Query: 273 RYDPV 277
+
Sbjct: 316 KGRYQ 320
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 29.3 bits (66), Expect = 1.5
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 8 KGTGGRSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIII 47
G + + G +G++GS+L +KL G ++ +
Sbjct: 17 LYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTV 56
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 29.0 bits (66), Expect = 1.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 16 FNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
G VA V GAS +G + L KQG+ +++ Y GN
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGN 38
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 29.2 bits (66), Expect = 1.6
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 5 HLKKGTGGRSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYR 50
H G R S V G SG +G+ + + I
Sbjct: 9 HHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDF 54
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.1 bits (66), Expect = 1.7
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQ-AVGPKRYLLSELLDWFHVVMKKGEPDYGYYRYDL 272
VYVGDVA + ++ I+ G + + D KKG+ +Y + L
Sbjct: 212 VYVGDVADVNLWFLENGV--SGIFNLGTG-RAESFQAVADATLAYHKKGQIEYIPFPDKL 268
Query: 273 RYDPV 277
+
Sbjct: 269 KGRYQ 273
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 28.7 bits (65), Expect = 2.0
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
SF V G + +G + G+ + + YR
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 48
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 28.7 bits (65), Expect = 2.1
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 12/55 (21%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSELLDWFH---VVMKKGEPDY 265
V+V DVA A + ++ G RY S + ++ P+Y
Sbjct: 225 VHVDDVARAHIYLLENSVPGG---------RYNCSPFIVPIEEMSQLLSAKYPEY 270
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 28.7 bits (65), Expect = 2.1
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 9 GTGGRSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
G G G V G + +G + + G+ + + R
Sbjct: 1 GPGSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRST 44
>3zr8_X AVR3A11; protein binding, plant pathogen interactions; HET: PGE;
0.90A {Phytophthora capsici}
Length = 65
Score = 26.7 bits (58), Expect = 2.2
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 213 PVYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSELLDWFHVVMKKGEPDYGYYRYDL 272
P V A DP A +YQ K Y L++L D+ +G+ D Y Y
Sbjct: 2 PTEKAAVKKMAKAIMADPSKADDVYQKWADKGYTLTQLSDFLK-SKTRGKYDRVYNGYMT 60
Query: 273 RYDPV 277
D V
Sbjct: 61 YRDYV 65
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 28.4 bits (64), Expect = 3.0
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSE 249
V++ D+ A + ++P A G RY+ S
Sbjct: 229 VHLDDLCNAHIYLFENPKAEG---------RYICSS 255
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 28.1 bits (63), Expect = 3.3
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 24/130 (18%)
Query: 23 VFGASGYMGSYLCNKLGKQG-SQIIIPYRG--NFYD-VRDLRLCGDLGQVLFQPY----- 73
V G +G +G + ++ K+ ++ + N + VRD+R FQ +
Sbjct: 40 VLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIG 99
Query: 74 HPRNDDEIRKAIKYSNVVINLIGREFATK-------NFTIADA---NVEIPARLARLSKE 123
D I+ +Y + V+NL A K FT+ NV + + S +
Sbjct: 100 SIEYDAFIKADGQY-DYVLNLS----ALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSID 154
Query: 124 MGVEKFIHIS 133
G +K+ +S
Sbjct: 155 AGAKKYFCVS 164
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 27.9 bits (63), Expect = 3.5
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
A + + +G + KL +G + + Y +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSD 41
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 27.8 bits (63), Expect = 3.6
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 17 NGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
A V GAS +G + +L ++G + + Y G+
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGS 38
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 28.2 bits (63), Expect = 3.8
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIII 47
+ G +G++G +L ++ + +
Sbjct: 29 ILGVNGFIGHHLSKRILETTDWEVF 53
>1ckv_A Protein (protein B); hydroxylase regulatory protein; NMR
{Escherichia coli} SCOP: d.137.1.1
Length = 141
Score = 27.1 bits (59), Expect = 4.0
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 87 YSNVVINLIGREFATKNFTIADANVEIPAR------LARLSKEMGVEKFIHISALNADPN 140
Y ++ L G++FA + F AD N + L + + + I ++ + N
Sbjct: 8 YDAGIMGLKGKDFADQFF--ADENQVVHESDTVVLVLKKSDEINTFIEEILLTDYKKNVN 65
Query: 141 PPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYGSGDKFLRYYGHM 192
P T + + ++ K G+ EV + + R ++Y G
Sbjct: 66 P-TVNVEDRAGYWWIKANGKIEVDCDEISELLGRQFNVYDFLVDVSSTIGRA 116
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 28.0 bits (63), Expect = 4.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 9/36 (25%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSE 249
+V DV A + + A+G RY+
Sbjct: 241 AHVEDVCRAHIFVAEKESASG---------RYICCA 267
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 28.0 bits (63), Expect = 4.3
Identities = 46/287 (16%), Positives = 96/287 (33%), Gaps = 74/287 (25%)
Query: 25 GASGYMGSYLCNKLGKQ-GSQIIIPYRGNFYDVRDLRLCGDLGQVLFQPYHPRNDDEIRK 83
GA G +G+ L KL K G++ +I D+R L + F+ + + ++I
Sbjct: 9 GACGQIGTELTQKLRKLYGTENVI-----ASDIRKLNT-DVVNSGPFEVVNALDFNQIEH 62
Query: 84 AIKYSNV--VINL---IGREFATKNFTIADANVEIPARLARLSKEMGVEKFIHISALNAD 138
++ + + + + D N+ + L+K ++K
Sbjct: 63 LVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF-------- 114
Query: 139 PNPPTYYISGGSQFYRTKYQGEKEVLREFPEATIFRPSDMYG----SGDKFLRYYGHMWR 194
+ S + F T + P+ TI PS +YG +G+++ YY +++
Sbjct: 115 ------WPSSIAVFGPTTPKENT------PQYTIMEPSTVYGISKQAGERWCEYYHNIYG 162
Query: 195 ---------------------------HVFRKLA------VYKKGEETIKQP-VYVGDVA 220
+F K + E + P +Y+ D
Sbjct: 163 VDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKM--PMMYMDDAI 220
Query: 221 AAIVAACKDPDAAGKIYQA--VGPKRYLLSELLDWFHVVMKKGEPDY 265
A + K P KI+ + + + +E+ + + + Y
Sbjct: 221 DATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITY 267
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 27.8 bits (63), Expect = 4.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 20 VATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
A + GAS +G + +L + G + I Y N
Sbjct: 3 KALITGASRGIGRAIALRLAEDGFALAIHYGQN 35
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 27.6 bits (62), Expect = 4.5
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
+ V G + +G + + G+ + + R
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSP 75
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 27.5 bits (62), Expect = 5.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYR 50
+ G VA V GAS +G + L ++G+++I
Sbjct: 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTAT 41
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 27.4 bits (62), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 20 VATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
V V GAS +G + LGK G ++++ Y +
Sbjct: 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARS 35
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 27.6 bits (62), Expect = 5.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 SSFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYR 50
++ + VA V GA+ +G + +LGK+G ++ + R
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCAR 54
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 27.6 bits (62), Expect = 5.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 120 LSKEMGVEKFIHISALNADP 139
L+KE GVE +LN +P
Sbjct: 292 LAKECGVENIRRAESLNGNP 311
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 27.7 bits (62), Expect = 5.6
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 214 VYVGDVAAAIVAACKDPDAAGKIYQAVGPKRYLLSEL 250
++V DVA ++A D G +Y K +++L
Sbjct: 261 IFVEDVANGLIACAAD-GTPGGVYNIASGKETSIADL 296
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 27.1 bits (61), Expect = 6.2
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYR 50
+A V GA +G + +L +G+ +
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDL 39
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 27.2 bits (61), Expect = 6.7
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 13 RSSFNGVVATVFGASGYMGSYLCNKLGKQGSQIII 47
R S G + + GA +G + K S++++
Sbjct: 26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVL 60
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 26.7 bits (58), Expect = 7.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 23 VFGASGYMGSYLCNKLGKQGSQIIIPYRG 51
+ G +G +G L +L G +I++ R
Sbjct: 5 LLGGTGNLGKGLALRLATLGHEIVVGSRR 33
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 27.1 bits (61), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIIIPYRGN 52
S G VA+V G+SG +G + + G+ + I Y +
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSH 68
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 26.7 bits (60), Expect = 8.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 15 SFNGVVATVFGASGYMGSYLCNKLGKQGSQIII 47
S N VA V GAS +G + + L +G+ ++
Sbjct: 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVG 34
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 27.3 bits (61), Expect = 8.4
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 161 KEVLREFPEATIFRPSD----MYGSGDKFLRYYGHMWRHVFRK 199
VL + A++ + S M + L + +
Sbjct: 74 DAVLSDV--ASLDQTSYAQVLMKRIFNMILPSHNPESEKKRAE 114
>3qi7_A Putative transcriptional regulator; periplasmic binding
protein-like, structural genomics, joint for structural
genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Length = 371
Score = 27.0 bits (59), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 117 LARLSKEMGVEKFIHIS 133
LA SKEMG + FIH +
Sbjct: 147 LAERSKEMGAKAFIHYA 163
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain,
heterodimer, internal cavity, activator, angiogenesis,
congenital erythrocytosis; 1.17A {Homo sapiens} PDB:
3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A
Length = 117
Score = 25.7 bits (57), Expect = 10.0
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 247 LSELLDWFHVVMKKGEPDYGYYR 269
+ + KG+ G YR
Sbjct: 53 SENMTKSHQNLCTKGQVVSGQYR 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.438
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,159,959
Number of extensions: 332168
Number of successful extensions: 1081
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 125
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)