BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4234
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55935|RS9_DROME 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=2
SV=2
Length = 195
Score = 239 bits (611), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 129/177 (72%), Positives = 134/177 (75%), Gaps = 41/177 (23%)
Query: 1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
MVN R+PSV SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE
Sbjct: 1 MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
Query: 61 LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALL 120
LLTLDEK+++RLF+GNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQT
Sbjct: 61 LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQT------- 113
Query: 121 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 114 ----------------------------------QVFKLGLAKSIHHARVLIRQRHI 136
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4
Length = 194
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 123/169 (72%), Gaps = 41/169 (24%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 QRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGV 128
RRLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQT
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT--------------- 112
Query: 129 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 113 --------------------------QVFKLGLAKSIHHARVLIRQRHI 135
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1
Length = 194
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 123/169 (72%), Gaps = 41/169 (24%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 QRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGV 128
RRLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQT
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT--------------- 112
Query: 129 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 113 --------------------------QVFKLGLAKSIHHARVLIRQRHI 135
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3
Length = 194
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 123/169 (72%), Gaps = 41/169 (24%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 QRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGV 128
RRLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQT
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT--------------- 112
Query: 129 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 113 --------------------------QVFKLGLAKSIHHARVLIRQRHI 135
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
Length = 194
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 123/169 (72%), Gaps = 41/169 (24%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 QRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGV 128
RRLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQT
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT--------------- 112
Query: 129 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 113 --------------------------QVFKLGLAKSIHHARVLIRQRHI 135
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1
Length = 194
Score = 213 bits (542), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 123/169 (72%), Gaps = 41/169 (24%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 QRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGV 128
RRLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQT
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT--------------- 112
Query: 129 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 113 --------------------------QVFKLGLAKSIHHARVLIRQRHI 135
>sp|Q29197|RS9_PIG 40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1
Length = 130
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 118/166 (71%), Gaps = 41/166 (24%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 6 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 65
Query: 69 QRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGV 128
RRLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQT
Sbjct: 66 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQT--------------- 110
Query: 129 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQ 174
QVFKLGLA SIHH RVLIRQ
Sbjct: 111 --------------------------QVFKLGLAXSIHHXRVLIRQ 130
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3
SV=1
Length = 189
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 122/173 (70%), Gaps = 41/173 (23%)
Query: 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
R+ +V SK +PRRP+EK RLDQELK+IG +GL+NKREVWRVKY LAK+RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 65 DEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLV 124
++K+ +RLFEGNALLRRLV+IGVLDE++MKLDYVLGLK+EDFLERRLQT
Sbjct: 63 EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQT----------- 111
Query: 125 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHAR+LI+Q HI
Sbjct: 112 ------------------------------QVFKLGLAKSIHHARILIKQHHI 134
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1
Length = 190
Score = 192 bits (488), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 116/172 (67%), Gaps = 41/172 (23%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
P +SKT PRRP+E ARLD ELK++GEYGLRNKREVWRV L+KIR+AARELLTLD
Sbjct: 2 APRSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLD 61
Query: 66 EKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVR 125
EK+ +RLFEGNAL+RRLVR+GVLDESRMKLDYVL LK EDFLERRL
Sbjct: 62 EKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRL-------------- 107
Query: 126 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QT V+KLGLAKSIHHARVLIRQRHI
Sbjct: 108 ---------------------------QTLVYKLGLAKSIHHARVLIRQRHI 132
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9b PE=1 SV=3
Length = 192
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 115/172 (66%), Gaps = 41/172 (23%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
P SKTY PRRP+E ARLD ELK+ GEYGLRNK E+WRV L+KIR+AARELLTLD
Sbjct: 4 APRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLD 63
Query: 66 EKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVR 125
EK+ +RLFEGNA++RRLVR+G+LDESRMKLDYVL L+IEDFLERRLQT
Sbjct: 64 EKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQT------------ 111
Query: 126 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLI QRHI
Sbjct: 112 -----------------------------QVFKLGLAKSIHHARVLIFQRHI 134
>sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9a PE=1 SV=2
Length = 191
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 115/172 (66%), Gaps = 41/172 (23%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
P SKTY PRRP+E ARLD ELK+ GEYGLRNK E+WRV L+KIR+AARELLTLD
Sbjct: 4 APRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLD 63
Query: 66 EKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVR 125
EK+ +RLFEGNA++RRLVR+G+LDE+RMKLDYVL L+IEDFLERRLQT
Sbjct: 64 EKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQT------------ 111
Query: 126 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QVFKLGLAKSIHHARVLI QRHI
Sbjct: 112 -----------------------------QVFKLGLAKSIHHARVLIFQRHI 134
>sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9B PE=1 SV=4
Length = 195
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 116/173 (67%), Gaps = 41/173 (23%)
Query: 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
R P +SKTY TP+RPYE +RLD ELK+ GE+GL+NKRE++R+ + L+KIR+AAR+LLT
Sbjct: 3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTR 62
Query: 65 DEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLV 124
DEK+ +RLFEGNAL+RRLVR+GVL E + KLDYVL LK+EDFLERRLQT
Sbjct: 63 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQT----------- 111
Query: 125 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QV+KLGLAKS+HHARVLI QRHI
Sbjct: 112 ------------------------------QVYKLGLAKSVHHARVLITQRHI 134
>sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9A PE=1 SV=3
Length = 197
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 116/173 (67%), Gaps = 41/173 (23%)
Query: 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
R P +SKTY TP+RPYE +RLD ELK+ GE+GL+NK+E++R+ + L+KIR+AAR+LLT
Sbjct: 3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTR 62
Query: 65 DEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLV 124
DEK+ +RLFEGNAL+RRLVR+GVL E + KLDYVL LK+EDFLERRLQT
Sbjct: 63 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQT----------- 111
Query: 125 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QV+KLGLAKS+HHARVLI QRHI
Sbjct: 112 ------------------------------QVYKLGLAKSVHHARVLITQRHI 134
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1
SV=1
Length = 185
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 116/172 (67%), Gaps = 41/172 (23%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
+ S +SKT TPRRP+EK R+D ELK++GE+GL+NK EVWRV+YALAKIRKAARELL LD
Sbjct: 1 MSSNYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLD 60
Query: 66 EKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVR 125
EK+ +R+FEG+ALLRRL ++GV++ES+ KLDY+L LK++DF+ERRLQ
Sbjct: 61 EKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQ------------- 107
Query: 126 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
T VFK GLAKSIHHARVLI+ RHI
Sbjct: 108 ----------------------------TLVFKNGLAKSIHHARVLIKGRHI 131
>sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2
SV=1
Length = 197
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 113/177 (63%), Gaps = 41/177 (23%)
Query: 1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
MVN R + KT+ PRRPYEK RLD ELK++GEYGLR KRE+WRV+Y L++IR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 61 LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALL 120
LLTLDEK RR+FEG ALLRR+ R G+LDE++ KLDYVL L +E+FLERRL
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRL--------- 111
Query: 121 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QT VFK G+AKSIHHARVLIRQRHI
Sbjct: 112 --------------------------------QTIVFKSGMAKSIHHARVLIRQRHI 136
>sp|Q9LXG1|RS91_ARATH 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1
SV=1
Length = 198
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 111/168 (66%), Gaps = 41/168 (24%)
Query: 10 HSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQ 69
+ KT+ PRRPYEK RLD ELK++GEYGLRNKRE+WRV+Y+L++IR AAR+LLTLDEK
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 70 RRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVL 129
RR+FEG ALLRR+ R G+LDES+ KLDYVL L +E+FLERRL
Sbjct: 70 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRL------------------ 111
Query: 130 DESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QT VFK G+AKSIHH+RVLIRQRHI
Sbjct: 112 -----------------------QTIVFKSGMAKSIHHSRVLIRQRHI 136
>sp|Q25555|RS9_NAEFO 40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1
Length = 186
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 109/177 (61%), Gaps = 41/177 (23%)
Query: 1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
MV NR VHSK + PRRP+EK R+D+ELK+ G+YGL+NK+E+WR++Y LA+ RK AR
Sbjct: 1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARH 60
Query: 61 LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALL 120
LLTL E + +R FEG ALLRR+ R+G+LDES+ +LDY+L LK ED LERRLQT V
Sbjct: 61 LLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQ---- 116
Query: 121 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
KLGL+KSIHHAR LI QRHI
Sbjct: 117 -------------------------------------KLGLSKSIHHARQLIFQRHI 136
>sp|P17959|RS9_TRYBB Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3
SV=1
Length = 190
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 97/167 (58%), Gaps = 41/167 (24%)
Query: 11 SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQR 70
++ + PRRP+EK RLD+E+K+ G+YGLR KRE+WRV L+K+R+ AR LLTL E R
Sbjct: 8 NRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPR 67
Query: 71 RLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLD 130
RL EG+A++RR G LDE + KLDYVL L + D LERRL
Sbjct: 68 RLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRL------------------- 108
Query: 131 ESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QT VFK GLAKS+HH+RVLI+QRHI
Sbjct: 109 ----------------------QTVVFKHGLAKSVHHSRVLIQQRHI 133
>sp|O15612|RS9_ENTHI 40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2
SV=2
Length = 185
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 93/168 (55%), Gaps = 41/168 (24%)
Query: 10 HSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQ 69
HS TY TP+ PYE+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L D K+
Sbjct: 8 HSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDP 67
Query: 70 RRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVL 129
+RL EG ALLRRL +G+L + KL++VL LK E+ LERRL
Sbjct: 68 KRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRL------------------ 109
Query: 130 DESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QT V++ G AKSIHHARVLIR + I
Sbjct: 110 -----------------------QTLVYRKGFAKSIHHARVLIRGKMI 134
>sp|Q2FT97|RS4_METHJ 30S ribosomal protein S4 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps4 PE=3 SV=1
Length = 181
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 43/173 (24%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P + K Y TP+RP+E +R+++E +++ EYGLRNKREVW K AL K RKAARE++ L
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 67 --KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLV 124
EQ R+ ER+ + L+ L
Sbjct: 64 TGSEQARV-----------------------------------ERK-----KDELIGSLQ 83
Query: 125 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
R G+L E+ +D VL LK+E L+RRLQTQV++ G A+S AR I HI
Sbjct: 84 RSGMLSEN-ADIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHI 135
>sp|A7IAH7|RS4_METB6 30S ribosomal protein S4 OS=Methanoregula boonei (strain 6A8)
GN=rps4 PE=3 SV=1
Length = 185
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 85/172 (49%), Gaps = 41/172 (23%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL-D 65
P + K+Y TP+RP+EK R+++E +++ EYGLRNKREVW+ + L K RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 66 EKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVR 125
+ +FE + L+ + R
Sbjct: 64 SATNQTVFEAK---------------------------------------KSELISHMQR 84
Query: 126 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+L +D VL LK+ LERRLQT V++ GLA+S AR L+ HI
Sbjct: 85 AGLLGPD-ADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHI 135
>sp|Q8TRR1|RS4_METAC 30S ribosomal protein S4 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps4 PE=3 SV=1
Length = 218
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P SK+Y TP+ P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVA 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
Q E LE +TQ S +L +L+R
Sbjct: 64 SGQ----------------------------------EGGLEGHYRTQ-SEEILSKLIRY 88
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G++ +S +D +L LK E+ LERRLQTQV +LGLA+++ AR I HI
Sbjct: 89 GII-KSDANIDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHI 138
>sp|O28000|RS4_ARCFU 30S ribosomal protein S4 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps4 PE=3 SV=1
Length = 172
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 5/123 (4%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLT--- 63
P H K Y TP P++KARL++E++++ +YGLRNKRE+WR + L K R+ AR+LL
Sbjct: 4 PKRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIG 63
Query: 64 LDEKEQR-RLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRR 122
L KE + ++++L ++G+L E+ LD +L L +EDFLERRLQT V L R
Sbjct: 64 LPGKEGEIAKAKAQTVIKKLNKMGILPEN-ATLDDILNLSVEDFLERRLQTMVYRQGLAR 122
Query: 123 LVR 125
++
Sbjct: 123 TIK 125
>sp|Q8PV18|RS4_METMA 30S ribosomal protein S4 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps4 PE=3 SV=1
Length = 219
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 35/171 (20%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLA--- 60
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
++ G E LE TQ S +L +L+R
Sbjct: 61 ----QVASGGQ--------------------------EGELEGHYATQ-SEEILSKLIRY 89
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G++ ++ +D +L LK E+ LERRLQTQV +LGLA+++ AR I HI
Sbjct: 90 GII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHI 139
>sp|Q9HJD7|RS4_THEAC 30S ribosomal protein S4 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps4 PE=3 SV=1
Length = 199
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 41/171 (23%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P H K Y TPR P+EK R+D+E KI+ +YGL+NK+E+WR + L+ IR AR+L
Sbjct: 4 PKFHHKKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDL----- 58
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
+R++ + V K LER +++RL R
Sbjct: 59 -----------------------RARLRTNDVNAQK---QLER---------MIKRLNRY 83
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
+L E+ LD VL L +E+ L+RRLQT VF+ LA S+ AR LI HI
Sbjct: 84 KLLSEN-ATLDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHI 133
>sp|Q46GC8|RS4_METBF 30S ribosomal protein S4 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps4 PE=3 SV=1
Length = 216
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 7/115 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P SK++ TPR P+++AR+ E++++ YGLRNKREVW+ L R AR LL
Sbjct: 4 PGKKSKSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAA 63
Query: 67 KEQRRLFEGNA------LLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
Q R EG+ +L +L+R G++ +S +D +L LK E+ LERRLQTQV
Sbjct: 64 NSQERGLEGHQKTQSEEILAKLIRYGII-KSDADIDDILSLKTENILERRLQTQV 117
>sp|A0B9L2|RS4_METTP 30S ribosomal protein S4 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps4 PE=3 SV=1
Length = 183
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P KTY PR+P+E R+ E+++I YGLRNKRE+W+ + L K R+ R LL
Sbjct: 4 PGKSHKTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKA 63
Query: 67 K-EQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVR 125
+ E R E A++ RL R G+L + LD +L LKI D LERRLQTQV L +R
Sbjct: 64 RGEARADIEAAAVINRLSRFGILKDG-ADLDAILSLKITDILERRLQTQVYRQGLANTIR 122
>sp|B8GEG7|RS4_METPE 30S ribosomal protein S4 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=rps4 PE=3 SV=1
Length = 181
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL-- 64
P ++K Y P+RP+EK R++ E +I+ EYGLRNKREVWR + L + RKAARELL
Sbjct: 4 PGKNTKGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMS 63
Query: 65 -DEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
EQ+ + LL L RIG+L + VL LKI+ LERRLQT V
Sbjct: 64 QSSDEQQIATKKEHLLGHLNRIGLLGPD-ADIGDVLSLKIQQPLERRLQTMV 114
>sp|A8A8W3|RS4_IGNH4 30S ribosomal protein S4 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rps4 PE=3 SV=1
Length = 166
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 84/171 (49%), Gaps = 44/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + P P+ K RL +E+K++GEYGLRNKRE+W L + R ARELL L
Sbjct: 4 PRKPRKKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPA 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
+ + + E ALL+RL +G++DE+ LD VL L + D LERRL
Sbjct: 64 EVREK--EEKALLKRLYDLGLVDEN-ATLDDVLSLTVRDLLERRL--------------- 105
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QT V+K GLAKSI+HAR L+ HI
Sbjct: 106 --------------------------QTVVYKKGLAKSIYHARQLVTHGHI 130
>sp|A3DMQ4|RS4_STAMF 30S ribosomal protein S4 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps4 PE=3 SV=1
Length = 168
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 84/171 (49%), Gaps = 44/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + PR P+ K L QELK++G YGLRNKRE+WR + + K R AR LL +
Sbjct: 4 PKKPRKKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAAPQ 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E R E ALL RL R+G+L E+ L+ VLGL +ED LERRLQ
Sbjct: 64 -EIREQAE-KALLNRLYRLGLLHEN-ASLEDVLGLTVEDLLERRLQ-------------- 106
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
T V+K GLA++I+HAR LI HI
Sbjct: 107 ---------------------------TIVYKKGLARTIYHARQLIIHGHI 130
>sp|A3CWH7|RS4_METMJ 30S ribosomal protein S4 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps4 PE=3 SV=1
Length = 182
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 86/171 (50%), Gaps = 39/171 (22%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P + K Y TP+R +EK RL+ E ++I +YGLRNKRE+W+ + L K R AREL+ L
Sbjct: 4 PGKNHKQYATPKRRFEKTRLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVAL-- 61
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
R G GL ED+L++R Q L+ L R
Sbjct: 62 -----------------RSG-------------GLSTEDYLKKRDQ------LVNHLYRY 85
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G++ E+ D VL LK+E L+RRLQT V + G A+S AR I HI
Sbjct: 86 GLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHI 135
>sp|Q97B95|RS4_THEVO 30S ribosomal protein S4 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rps4
PE=3 SV=1
Length = 200
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 8/113 (7%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAAR----ELL 62
P H K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 63 TLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
D Q++L +++RL R +L + + LD VL L +E+ L+RRLQT V
Sbjct: 64 ASDANAQKQL---ERMIKRLSRYKILSD-KATLDDVLSLTVENILDRRLQTIV 112
>sp|A2SSV9|RS4_METLZ 30S ribosomal protein S4 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps4 PE=3 SV=1
Length = 181
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 39/171 (22%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P ++K Y +P+R +EK+R++ E + YGLRNKRE+WR L K R ARE+L +
Sbjct: 4 PGKNTKQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTS 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
IG ++ + D ++G L R
Sbjct: 64 S-----------------IGEAPKTIARRDELVGT---------------------LQRY 85
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+L +D +L LK+ED LERRLQT V++ GLA+S AR LI HI
Sbjct: 86 GLLGPD-AAMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHI 135
>sp|Q0W1V5|RS4_UNCMA 30S ribosomal protein S4 OS=Uncultured methanogenic archaeon RC-I
GN=rps4 PE=3 SV=1
Length = 205
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 37/171 (21%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L K R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL---- 59
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
GV+ + D I D + ++++L +
Sbjct: 60 -------------------GVMSAGNLPED---SHYIRD----------AQNIVKKLQTL 87
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+L E KL+ VL LK++D +ERRLQT +++ G A SI AR I HI
Sbjct: 88 GILKED-AKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHI 137
>sp|A1RWT8|RS4_THEPD 30S ribosomal protein S4 OS=Thermofilum pendens (strain Hrk 5)
GN=rps4 PE=3 SV=1
Length = 172
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 81/171 (47%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + P P+ K L +E++++GEYGLRNKRE+W K L +IR AR+LL L
Sbjct: 4 PKKPRKKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPA 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
+E+ +L + L+ RL ++G+L LD VL L + D LERRL
Sbjct: 64 EERIKLEK--PLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRL--------------- 106
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
QT V++ GLA +I HAR LI HI
Sbjct: 107 --------------------------QTIVYRKGLATTIRHARQLITHGHI 131
>sp|A2BK77|RS4_HYPBU 30S ribosomal protein S4 OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=rps4 PE=3 SV=1
Length = 176
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 44/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K ++ P+ P+ K RL +EL+++G YGLRNKRE+W+++ R AR LL L
Sbjct: 4 PKKPRKKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
+ ++ + ALL RL +
Sbjct: 64 E-------------------------------------------VREKEEKALLARLNEL 80
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
GVL E+ LD VL L E FLERRLQT V+K GLA++I+ AR LI HI
Sbjct: 81 GVLPEN-ATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHI 130
>sp|Q9YB58|RS4_AERPE 30S ribosomal protein S4 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps4 PE=3
SV=2
Length = 171
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + P+ P+ K RL++E +++G YGLRNK+E+W+ + + R AR LL L
Sbjct: 4 PRKPRKKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
+ +R + S L+ L R+
Sbjct: 64 EVRR-------------------------------------------EASRVLVESLYRM 80
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G++D + +D VLG+ E LERRLQT V+K GLAK+I+ AR L+ HI
Sbjct: 81 GLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHI 131
>sp|Q12ZR5|RS4_METBU 30S ribosomal protein S4 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps4 PE=3 SV=1
Length = 184
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P +K+Y TP+ P++ R+ E++++ +YGLRNKRE+W+ L + R AR LL E
Sbjct: 4 PGKSTKSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLA--E 61
Query: 67 KEQRRLF-----EGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLR 121
+ L E + LL +L+R +L +S +D VLGL+ E LERRLQTQV L
Sbjct: 62 SAESDLIGHSKTEADQLLTKLIRFSIL-KSDSNIDDVLGLQTEAILERRLQTQVHRLGLA 120
Query: 122 RLVR 125
R R
Sbjct: 121 RTAR 124
>sp|Q8TVC0|RS4_METKA 30S ribosomal protein S4 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps4 PE=3 SV=1
Length = 186
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 45/173 (26%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K Y TPR P+E RL+ E K++ +YGLR K+E+WR + L + R+ A+EL+ +
Sbjct: 4 PKRPRKKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTD 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E +R E AL R+L +
Sbjct: 64 PEAQRERE-------------------------------------------ALFRKLYDL 80
Query: 127 GVLDE--SRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+LD+ LD +L L +ED LERRLQT V++ GLAK+ AR L+ RHI
Sbjct: 81 GILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHI 133
>sp|Q96YV8|RS4_SULTO 30S ribosomal protein S4 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=rps4 PE=3 SV=1
Length = 177
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P + + P P+ + L++E +IG+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E+ +R K L+++L R+
Sbjct: 64 AER--------------------STREK-----------------------QLIQKLYRM 80
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI
Sbjct: 81 GIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHI 131
>sp|Q9HQJ6|RS4_HALSA 30S ribosomal protein S4 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps4 PE=3 SV=1
Length = 170
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
+P ++K Y TP PY+ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLLG-- 60
Query: 66 EKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
Q G + RL RIG+L E +LD VL L++ D LERRLQT V
Sbjct: 61 ---QTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVV 106
>sp|B0R4Y0|RS4_HALS3 30S ribosomal protein S4 OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=rps4 PE=3 SV=1
Length = 170
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
+P ++K Y TP PY+ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLLG-- 60
Query: 66 EKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
Q G + RL RIG+L E +LD VL L++ D LERRLQT V
Sbjct: 61 ---QTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVV 106
>sp|Q8SRW6|RS9_ENCCU 40S ribosomal protein S9 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS9 PE=1 SV=1
Length = 184
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 11 SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQR 70
SK TPR P+EK RL +E +++G YGL+NK E+W ++ AK ++ AR LLT E
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 71 RLFEGNALLRRLVRIGVLD--------ESRMKLDYVLGLKIEDFLERRLQTQVSNALLRR 122
+ G +LLRRL++ G+L E L+ VL L I +LERRL
Sbjct: 67 PI-NGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRL----------- 114
Query: 123 LVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
Q +VF GLAKS+HHAR+LI R I
Sbjct: 115 ------------------------------QFRVFAAGLAKSVHHARLLIGGRCI 139
>sp|P39467|RS4_SULAC 30S ribosomal protein S4 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps4 PE=3 SV=3
Length = 176
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K ++ P P+ K L +E +IG+YGLRNK+E+W + + R AR LL L
Sbjct: 4 PRKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E R L+++L R+G+L++ LD +L L E++LERRLQ
Sbjct: 64 AE--RNIREKQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQ-------------- 107
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
T V+K GLA++I+ AR LI HI
Sbjct: 108 ---------------------------TIVYKKGLARTIYQARQLITHGHI 131
>sp|Q00862|RS4_HALMA 30S ribosomal protein S4 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps4 PE=3
SV=1
Length = 171
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 10 HSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELL-TLDEKE 68
++K Y TP P++ R+ E +IG YGL+NK E+WR + L R+ AR+LL + E E
Sbjct: 6 NTKFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHE 65
Query: 69 QRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
E L RL R G+L+E + +LD VL L + D LERRLQT V
Sbjct: 66 T----ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVV 107
>sp|Q18G54|RS4_HALWD 30S ribosomal protein S4 OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps4 PE=3 SV=1
Length = 175
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 41/168 (24%)
Query: 10 HSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQ 69
++K Y TP PY+ R+ QE ++G YGL+NK E+WR + L + R+ AR L+
Sbjct: 6 NTKRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLI------- 58
Query: 70 RRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVL 129
G A + + + LG E+FL+R L R G+L
Sbjct: 59 -----GEA------------QGDVSVAEALG---EEFLDR-------------LRRYGIL 85
Query: 130 DESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
+ + VLGL + D LERRLQT V++ GLA + AR I HI
Sbjct: 86 S-ADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHI 132
>sp|C3N8R6|RS4_SULIY 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + +P P+ K R+ E +++G+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E R VR L+ +L+++
Sbjct: 64 AE------------RAVR-------------------------------EKQLVGKLLKM 80
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+L +D +L L +D LERRLQT V+K GLA + + AR LI HI
Sbjct: 81 GLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHI 131
>sp|C3NMQ2|RS4_SULIN 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=rps4 PE=3 SV=1
Length = 181
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + +P P+ K R+ E +++G+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E R VR L+ +L+++
Sbjct: 64 AE------------RAVR-------------------------------EKQLVGKLLKM 80
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+L +D +L L +D LERRLQT V+K GLA + + AR LI HI
Sbjct: 81 GLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHI 131
>sp|C3MZ03|RS4_SULIM 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + +P P+ K R+ E +++G+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E R VR L+ +L+++
Sbjct: 64 AE------------RAVR-------------------------------EKQLVGKLLKM 80
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+L +D +L L +D LERRLQT V+K GLA + + AR LI HI
Sbjct: 81 GLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHI 131
>sp|C3MJP5|RS4_SULIL 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 43/171 (25%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + +P P+ K R+ E +++G+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP 63
Query: 67 KEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRI 126
E R VR L+ +L+++
Sbjct: 64 AE------------RAVR-------------------------------EKQLVGKLLKM 80
Query: 127 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
G+L +D +L L +D LERRLQT V+K GLA + + AR LI HI
Sbjct: 81 GLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHI 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,879,259
Number of Sequences: 539616
Number of extensions: 2337042
Number of successful extensions: 9589
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 8982
Number of HSP's gapped (non-prelim): 579
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)