Query psy4234
Match_columns 177
No_of_seqs 146 out of 922
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:15:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_J 40S ribosomal protein S 100.0 3.9E-45 1.3E-49 303.8 13.7 132 5-177 3-134 (197)
2 2xzm_D Ribosomal protein S4 co 100.0 4.5E-43 1.5E-47 287.3 13.7 132 5-177 3-134 (181)
3 3j20_D 30S ribosomal protein S 100.0 9.9E-42 3.4E-46 279.7 11.3 127 7-177 4-130 (180)
4 3iz6_C 40S ribosomal protein S 100.0 1.5E-43 5.2E-48 293.9 -12.1 130 7-177 5-136 (195)
5 3bbn_D Ribosomal protein S4; s 99.4 3E-14 1E-18 118.2 0.6 78 80-177 39-116 (201)
6 3r8n_D 30S ribosomal protein S 99.3 2.2E-13 7.5E-18 113.5 1.5 78 80-177 45-122 (205)
7 1c05_A Ribosomal protein S4 de 99.2 6.3E-12 2.2E-16 100.0 1.7 77 81-177 2-78 (159)
8 2vqe_D 30S ribosomal protein S 99.0 3.3E-11 1.1E-15 99.9 1.5 78 80-177 49-126 (209)
9 2cqj_A BRMS2, U3 small nucleol 98.8 5.4E-10 1.8E-14 78.5 0.9 34 144-177 2-35 (71)
10 1p9k_A ORF, hypothetical prote 80.9 0.17 5.8E-06 34.8 -1.4 28 150-177 21-48 (79)
11 3j20_E 30S ribosomal protein S 78.1 0.73 2.5E-05 39.2 1.4 30 141-177 42-71 (243)
12 1c05_A Ribosomal protein S4 de 69.2 5.6 0.00019 30.9 4.4 56 24-88 8-63 (159)
13 2ktl_A Tyrosyl-tRNA synthetase 47.3 8 0.00028 30.9 1.8 25 152-176 52-76 (164)
14 3j20_D 30S ribosomal protein S 39.5 16 0.00054 29.4 2.4 17 115-131 69-85 (180)
15 3u5c_J 40S ribosomal protein S 36.5 20 0.00067 29.4 2.5 17 115-131 72-88 (197)
16 2pfc_A Hypothetical protein RV 35.5 27 0.00093 28.6 3.2 39 112-157 82-120 (183)
17 2jan_A Tyrosyl-tRNA synthetase 23.1 40 0.0014 30.3 2.3 26 151-176 357-382 (432)
18 1h3f_A Tyrosyl-tRNA synthetase 20.9 46 0.0016 29.8 2.3 26 151-176 370-395 (432)
No 1
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=100.00 E-value=3.9e-45 Score=303.84 Aligned_cols=132 Identities=71% Similarity=1.154 Sum_probs=128.1
Q ss_pred CCCCCCCccccCCCCccchhhhhHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhHHHHHHHHHH
Q psy4234 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVR 84 (177)
Q Consensus 5 ~~~~~~~k~~~~p~~p~~~~r~~~e~~~~~~Ygl~nk~E~w~~~~~l~~irk~A~~L~~l~~~d~~r~~~~~~Ll~kL~~ 84 (177)
+.|++++|+|+||+|||+++|+++|+++|++|||+||+|||+|+++|++||++|+.|++++++||++++++++||++|++
T Consensus 3 ~~~~~~~k~~~tP~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~Ll~l~~~dp~r~~~~~~LL~kL~~ 82 (197)
T 3u5c_J 3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR 82 (197)
T ss_dssp CCCCCCCCSCCCCSSSCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCCCchhHHhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcccCCC
Q psy4234 85 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKS 164 (177)
Q Consensus 85 ~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlglA~s 164 (177)
||++++++++| ++|+++++++|||+|||++|+++|||+|
T Consensus 83 ~Gil~~~~~~L-----------------------------------------~~v~~l~~~~~le~RLD~~L~r~G~a~S 121 (197)
T 3u5c_J 83 VGVLSEDKKKL-----------------------------------------DYVLALKVEDFLERRLQTQVYKLGLAKS 121 (197)
T ss_dssp HTSSCGGGCSS-----------------------------------------HHHHHCCHHHHHTTSHHHHHHHSSTTSS
T ss_pred cCCCCCcccCh-----------------------------------------hhhhcccHHHHHHHHHHHHHHHccccCC
Confidence 99998767777 8999999999999999999999999999
Q ss_pred hHhhhhhhccCCC
Q psy4234 165 IHHARVLIRQRHI 177 (177)
Q Consensus 165 i~~ArqlI~hGHI 177 (177)
+.+|+|||.||||
T Consensus 122 r~~ArqLI~~GhV 134 (197)
T 3u5c_J 122 VHHARVLITQRHI 134 (197)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCE
Confidence 9999999999998
No 2
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=100.00 E-value=4.5e-43 Score=287.25 Aligned_cols=132 Identities=70% Similarity=1.085 Sum_probs=125.2
Q ss_pred CCCCCCCccccCCCCccchhhhhHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhHHHHHHHHHH
Q psy4234 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVR 84 (177)
Q Consensus 5 ~~~~~~~k~~~~p~~p~~~~r~~~e~~~~~~Ygl~nk~E~w~~~~~l~~irk~A~~L~~l~~~d~~r~~~~~~Ll~kL~~ 84 (177)
+.|++++|+|+||++||+++++++|+++|++|||+||+|||+|+++|++||++|+.|++++++||++++++++|++||++
T Consensus 3 ~~~~~~~k~~~~p~~~w~~~~~~~E~~l~~~YgL~nk~e~w~~~~~~~~iR~~ar~L~~l~~~d~~r~~~~~~ll~kl~~ 82 (181)
T 2xzm_D 3 KTYINTSKTYSTPRRPYEKERLDNEMKLIGTFGLKNKREVWRVQMILAKFRKAARELLTLDPKDPRRLFEGSALLRRMFK 82 (181)
T ss_dssp CCCSCCCCCCCCCSSTTCHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCCCCccccccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcccCCC
Q psy4234 85 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKS 164 (177)
Q Consensus 85 ~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlglA~s 164 (177)
||++.+++|+|+++|| +++++||++|||++|+++||+.|
T Consensus 83 ~g~~~~~kqkl~~~~g-----------------------------------------l~~~~~le~RLD~vL~~~G~a~S 121 (181)
T 2xzm_D 83 YGLLSEQERKLDYVLG-----------------------------------------LTIHKLMERRLQTRVFKLNLANS 121 (181)
T ss_dssp TTSSCTTCCSTHHHHS-----------------------------------------CCHHHHHTTBHHHHHHHTTCSSS
T ss_pred hccccchhhhHHHHhC-----------------------------------------cCcchhhccchhHHHHhccccCC
Confidence 9999888999955555 55568999999999999999999
Q ss_pred hHhhhhhhccCCC
Q psy4234 165 IHHARVLIRQRHI 177 (177)
Q Consensus 165 i~~ArqlI~hGHI 177 (177)
..+|++||.||||
T Consensus 122 R~~Ar~LI~~G~V 134 (181)
T 2xzm_D 122 IHHSRVLIRQRHI 134 (181)
T ss_dssp TTHHHHHTTTTCC
T ss_pred HHHHHHHHHCCEE
Confidence 9999999999998
No 3
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.9e-42 Score=279.69 Aligned_cols=127 Identities=46% Similarity=0.727 Sum_probs=118.1
Q ss_pred CCCCCccccCCCCccchhhhhHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhHHHHHHHHHHhc
Q psy4234 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIG 86 (177)
Q Consensus 7 ~~~~~k~~~~p~~p~~~~r~~~e~~~~~~Ygl~nk~E~w~~~~~l~~irk~A~~L~~l~~~d~~r~~~~~~Ll~kL~~~G 86 (177)
|++++|+|.||++||+++|+++|++++++|||+||+|||+|+++|++||++|+.|++++++|+ ..++++||++|++||
T Consensus 4 p~~~~k~~~~p~~pw~~~r~~~E~kl~~~YgL~nk~e~wk~~~~l~~~r~~Ar~L~~l~~~d~--~~~~~~LL~kL~~~G 81 (180)
T 3j20_D 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQA--EIEREQLLARLKRLG 81 (180)
T ss_dssp -----CCCCCCSSSSCHHHHHHHHHHHHHHTCSCTHHHHHHHHHHHHHHHHHHHHHHSCTTSC--THHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCchhhhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHcC
Confidence 799999999999999999999999999999999999999999999999999999999999994 559999999999999
Q ss_pred cccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcccCCChH
Q psy4234 87 VLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIH 166 (177)
Q Consensus 87 ll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlglA~si~ 166 (177)
+|++ +.+| |+|+++++++|||+|||++|++.|||+|+.
T Consensus 82 ll~~-~~~L-----------------------------------------~~vl~l~~~~~le~RLD~~L~~~G~a~SR~ 119 (180)
T 3j20_D 82 LLPE-DAVL-----------------------------------------DDVLSLTIEDILERRLQTIVYKKGLARTMR 119 (180)
T ss_dssp SSSS-CCCS-----------------------------------------HHHHTCCHHHHHHTSHHHHHHHHTSSSSHH
T ss_pred CCCC-CCCH-----------------------------------------HHHhccchHhhhhhhhhheeecCcccCcHH
Confidence 9988 7777 999999999999999999999999999999
Q ss_pred hhhhhhccCCC
Q psy4234 167 HARVLIRQRHI 177 (177)
Q Consensus 167 ~ArqlI~hGHI 177 (177)
+|++||.||||
T Consensus 120 ~Ar~LI~~G~V 130 (180)
T 3j20_D 120 QARQLIVHGHI 130 (180)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCe
Confidence 99999999998
No 4
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-43 Score=293.90 Aligned_cols=130 Identities=71% Similarity=1.133 Sum_probs=125.8
Q ss_pred CCCCCccc--cCCCCccchhhhhHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhHHHHHHHHHH
Q psy4234 7 PSVHSKTY--VTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVR 84 (177)
Q Consensus 7 ~~~~~k~~--~~p~~p~~~~r~~~e~~~~~~Ygl~nk~E~w~~~~~l~~irk~A~~L~~l~~~d~~r~~~~~~Ll~kL~~ 84 (177)
|++++|+| +||+|||+++|+++|+++|++|||+||+|||+|+++|++||++|+.|++++++||++++++++||++|+.
T Consensus 5 ~~~~~k~~~~~~P~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~L~~l~e~d~~r~~~~~~lL~kL~~ 84 (195)
T 3iz6_C 5 PRTYSKTYSTKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNR 84 (195)
T ss_dssp HHHHHHHHHSCCSSCCCCCSHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHSSSCHHHHHHHTCCCHHHHHHHHTCSSST
T ss_pred cCCCCceeCCCCCCCchhHHhhHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 68999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcccCCC
Q psy4234 85 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKS 164 (177)
Q Consensus 85 ~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlglA~s 164 (177)
+|++++++.+| |+|+++++++|||+|||++|+++|||+|
T Consensus 85 ~Gll~e~~~~L-----------------------------------------d~vl~l~~~~~le~RLD~~L~r~G~a~S 123 (195)
T 3iz6_C 85 YGLLADGQNKL-----------------------------------------DYVLALTVENFLARRLQTLVFKAGMAKS 123 (195)
T ss_dssp TSHHHHHHHTT-----------------------------------------CCEETTEECCCTTSCCCSSCCCCCCHHH
T ss_pred cCCCCccccCH-----------------------------------------HHHHhhhHHHHHHhhhhHHHHhccccCC
Confidence 99997755556 9999999999999999999999999999
Q ss_pred hHhhhhhhccCCC
Q psy4234 165 IHHARVLIRQRHI 177 (177)
Q Consensus 165 i~~ArqlI~hGHI 177 (177)
+.+|+|||.||||
T Consensus 124 R~~ArqlI~~GhV 136 (195)
T 3iz6_C 124 IHHARVLIRQRHI 136 (195)
T ss_dssp HSCTTSHHHHHST
T ss_pred HHHHHHHHHcCCE
Confidence 9999999999997
No 5
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.40 E-value=3e-14 Score=118.23 Aligned_cols=78 Identities=28% Similarity=0.377 Sum_probs=68.1
Q ss_pred HHHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhc
Q psy4234 80 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKL 159 (177)
Q Consensus 80 ~kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rl 159 (177)
+|+++||+...++|+++++||++|+|| ++++..|.. +.++.+.++.++||+|||++|+++
T Consensus 39 ~K~S~y~~~l~ekqkl~~~yGl~e~q~-----~~~~~~a~~---------------~~g~tg~~ll~~Le~RLD~~L~r~ 98 (201)
T 3bbn_D 39 GKRSQYRIRLEEKQKLRFHYGITERQL-----LKYVRIARK---------------AKGSTGQVLLQLLEMRLDNILFRL 98 (201)
T ss_dssp CCCCTTHHHHTTHHHHHHHHTCCHHHH-----HHHHHHHHH---------------SSSCTTTTTTHHHHSBTTTTTTTT
T ss_pred cccchHHHHHHHHHHHHHHhCChHHHH-----HHHHHHHHh---------------ccCCcHHHHHHHHHHHHHHHHHHc
Confidence 478999996666999999999987666 466777733 467789999999999999999999
Q ss_pred ccCCChHhhhhhhccCCC
Q psy4234 160 GLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 160 glA~si~~ArqlI~hGHI 177 (177)
||+.|..+|+|+|.||||
T Consensus 99 g~a~SR~~ArqLI~~G~V 116 (201)
T 3bbn_D 99 GMAPTIPGARQLVNHRHI 116 (201)
T ss_dssp TSSSSSHHHHHHHHTTCE
T ss_pred CCcCCHHHHHHHHhCCcE
Confidence 999999999999999997
No 6
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=99.33 E-value=2.2e-13 Score=113.50 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=67.8
Q ss_pred HHHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhc
Q psy4234 80 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKL 159 (177)
Q Consensus 80 ~kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rl 159 (177)
.|+++||+-..+|||++++||++|+|| +++|..|.. ..+..+.++.++||.|||.+|+++
T Consensus 45 ~K~S~y~~qL~eKQklr~~YG~~EkQf-----~~~~~~A~~---------------~kG~tg~~ll~lle~RLD~~L~r~ 104 (205)
T 3r8n_D 45 PRLSDYGVQLREKQKVRRIYGVLERQF-----RNYYKEAAR---------------LKGNTGENLLALLEGRLDNVVYRM 104 (205)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCHHHH-----HHHHHHHHH---------------SSSCHHHHHHHHHHTBTTHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHhCCCHHHH-----HHHHHHHHh---------------cCCCcHHHHHHhhHhhHHHHHHHh
Confidence 478999995555999999999977766 467777733 367789999999999999999999
Q ss_pred ccCCChHhhhhhhccCCC
Q psy4234 160 GLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 160 glA~si~~ArqlI~hGHI 177 (177)
|++.|..+|+++|.||||
T Consensus 105 g~~~SR~~ArqLI~~G~V 122 (205)
T 3r8n_D 105 GFGATRAEARQLVSHKAI 122 (205)
T ss_dssp SSCSSHHHHHHHHHTTCC
T ss_pred cchhHHHHHHHHHHCCCE
Confidence 999999999999999997
No 7
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=99.16 E-value=6.3e-12 Score=99.96 Aligned_cols=77 Identities=30% Similarity=0.449 Sum_probs=64.3
Q ss_pred HHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcc
Q psy4234 81 RLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLG 160 (177)
Q Consensus 81 kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlg 160 (177)
|+++||+-..+|||++++||++|+|| ++++..|. ++.+..+.++.++|+.|||.++++.|
T Consensus 2 k~s~y~~~l~~kqk~~~~yg~~e~q~-----~~~~~~a~---------------~~~g~~~~~~~~~le~RLD~~L~~~g 61 (159)
T 1c05_A 2 KLSEYGLQLQEKQKLRHMYGVNERQF-----RKTFEEAG---------------KMPGKHGENFMILLESRLDNLVYRLG 61 (159)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCHHHH-----HHHHHHHT---------------TSSSTHHHHHHHHHHHBHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHhCCCHHHH-----HHHHHHHH---------------hccCChhHHHHHHHHHHHHHHHHHcC
Confidence 46789984444999999999986666 45666662 23566788999999999999999999
Q ss_pred cCCChHhhhhhhccCCC
Q psy4234 161 LAKSIHHARVLIRQRHI 177 (177)
Q Consensus 161 lA~si~~ArqlI~hGHI 177 (177)
++.|..+|+++|.||||
T Consensus 62 ~~~SR~~ar~lI~~G~V 78 (159)
T 1c05_A 62 LARTRRQARQLVTHGHI 78 (159)
T ss_dssp SCSSHHHHHHHHHTTCE
T ss_pred CcCCHHHHHHHHHCCCE
Confidence 99999999999999997
No 8
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=99.05 E-value=3.3e-11 Score=99.88 Aligned_cols=78 Identities=32% Similarity=0.402 Sum_probs=65.0
Q ss_pred HHHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhc
Q psy4234 80 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKL 159 (177)
Q Consensus 80 ~kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rl 159 (177)
.|+++||+-..+|||++++||++++||. .++..|.. ..+..+.++.+.++.|||.++++.
T Consensus 49 ~k~s~y~~~L~ekqkl~~~Yg~~e~q~~-----~y~~~a~~---------------~~g~t~~~l~~~le~RLD~~L~~~ 108 (209)
T 2vqe_D 49 RRPSDYAVRLREKQKLRRIYGISERQFR-----NLFEEASK---------------KKGVTGSVFLGLLESRLDNVVYRL 108 (209)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCHHHHH-----HHHHHHHH---------------SSSCHHHHHHHHHHTBHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHhCccHHHHH-----HHHHHHHH---------------ccCCcchHHHHhHHHHHHHHHHHh
Confidence 3789999955559999999999877764 56666644 134567778899999999999999
Q ss_pred ccCCChHhhhhhhccCCC
Q psy4234 160 GLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 160 glA~si~~ArqlI~hGHI 177 (177)
|++.|..+|+++|.||||
T Consensus 109 g~~~SR~~arqLI~~G~V 126 (209)
T 2vqe_D 109 GFAVSRRQARQLVRHGHI 126 (209)
T ss_dssp TSSSSHHHHHHHHHTTCE
T ss_pred cCcCCHHHHHHHHHCCCE
Confidence 999999999999999997
No 9
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=5.4e-10 Score=78.48 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=32.9
Q ss_pred hhhhhhhhhhhhhhhcccCCChHhhhhhhccCCC
Q psy4234 144 IEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 144 v~~fleRRLqtvv~rlglA~si~~ArqlI~hGHI 177 (177)
+++|||+|||+++++.|||+|..+|++||.||||
T Consensus 2 ~~~~l~~RLD~~l~~~gla~SR~~A~~lI~~G~V 35 (71)
T 2cqj_A 2 SSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHV 35 (71)
T ss_dssp CSSCCEEEHHHHHHHTTCSSSHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHhCCcCCHHHHHHHHHCCcE
Confidence 6799999999999999999999999999999997
No 10
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=80.92 E-value=0.17 Score=34.76 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.6
Q ss_pred hhhhhhhhhcccCCChHhhhhhhccCCC
Q psy4234 150 RRLQTQVFKLGLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 150 RRLqtvv~rlglA~si~~ArqlI~hGHI 177 (177)
.||+.++...|++.|..+|+.+|.+|.|
T Consensus 21 ~RLdk~L~~~g~~~SR~~a~~lI~~G~V 48 (79)
T 1p9k_A 21 VELCDLLKLEGWSESGAQAKIAIAEGQV 48 (79)
T ss_dssp CCHHHHHHHHTSCSSSSTTSHHHHHHHH
T ss_pred chHHHHHHHCCCCCCHHHHHHHHHCCEE
Confidence 5999999999999999999999998864
No 11
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.08 E-value=0.73 Score=39.19 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=24.2
Q ss_pred cchhhhhhhhhhhhhhhhcccCCChHhhhhhhccCCC
Q psy4234 141 GLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 141 ~l~v~~fleRRLqtvv~rlglA~si~~ArqlI~hGHI 177 (177)
++.+.-||+- ++|+|.|.+||+|++.||||
T Consensus 42 ~lPL~i~LRd-------rLgyA~t~rEar~Iv~~~~I 71 (243)
T 3j20_E 42 SIPLLYIVRD-------YLGYAKTAREARKILNEGKF 71 (243)
T ss_dssp CEEHHHHHHT-------TSCCCSSHHHHHHHHHHCSC
T ss_pred ceeehhhhhh-------hhccccCHHHHHHHHHCCcE
Confidence 3445556665 57999999999999999997
No 12
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=69.15 E-value=5.6 Score=30.90 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhHHHHHHHHHHhccc
Q psy4234 24 ARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVL 88 (177)
Q Consensus 24 ~r~~~e~~~~~~Ygl~nk~E~w~~~~~l~~irk~A~~L~~l~~~d~~r~~~~~~Ll~kL~~~Gll 88 (177)
.++.++.++...|||. .+.++++.+.|+.+.+.+.+. .-...+..|.+-|++.|+.
T Consensus 8 ~~l~~kqk~~~~yg~~--------e~q~~~~~~~a~~~~g~~~~~-~~~~le~RLD~~L~~~g~~ 63 (159)
T 1c05_A 8 LQLQEKQKLRHMYGVN--------ERQFRKTFEEAGKMPGKHGEN-FMILLESRLDNLVYRLGLA 63 (159)
T ss_dssp HHHHHHHHHHHTTTCC--------HHHHHHHHHHHTTSSSTHHHH-HHHHHHHBHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhccCChhHH-HHHHHHHHHHHHHHHcCCc
Confidence 4688999999999998 467888999998887765443 2223445666666777764
No 13
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=47.28 E-value=8 Score=30.90 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.1
Q ss_pred hhhhhhhcccCCChHhhhhhhccCC
Q psy4234 152 LQTQVFKLGLAKSIHHARVLIRQRH 176 (177)
Q Consensus 152 Lqtvv~rlglA~si~~ArqlI~hGH 176 (177)
|-.+++..||+.|-.+||.+|.+|=
T Consensus 52 ivdlLv~aGLa~SKsEARRlI~qGG 76 (164)
T 2ktl_A 52 FSKVLWSAGLVASKSEGQRIINNNG 76 (164)
T ss_dssp HHHHHHHHTSCSTHHHHHHHHHHTC
T ss_pred HHHHHHHhCcccCHHHHHHHHHhCC
Confidence 6667789999999999999998873
No 14
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.47 E-value=16 Score=29.45 Aligned_cols=17 Identities=47% Similarity=0.702 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhccccc
Q psy4234 115 VSNALLRRLVRIGVLDE 131 (177)
Q Consensus 115 ~~~a~~~rl~~~~~~~e 131 (177)
...++++||.+.|++++
T Consensus 69 ~~~~LL~kL~~~Gll~~ 85 (180)
T 3j20_D 69 EREQLLARLKRLGLLPE 85 (180)
T ss_dssp HHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 45689999999999985
No 15
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=36.47 E-value=20 Score=29.44 Aligned_cols=17 Identities=71% Similarity=1.062 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhccccc
Q psy4234 115 VSNALLRRLVRIGVLDE 131 (177)
Q Consensus 115 ~~~a~~~rl~~~~~~~e 131 (177)
...++++||.+.|+++|
T Consensus 72 ~~~~LL~kL~~~Gil~~ 88 (197)
T 3u5c_J 72 EGNALIRRLVRVGVLSE 88 (197)
T ss_dssp HHHHHHHHHHHHTSSCG
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 68899999999999975
No 16
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=35.51 E-value=27 Score=28.56 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhh
Q psy4234 112 QTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVF 157 (177)
Q Consensus 112 ~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~ 157 (177)
|++..=.++++.|..+.++ ...+.++++||+|.|+.|+-
T Consensus 82 fNQlaY~l~A~~v~~~li~-------~f~~Wtiddf~~rQLsdiLI 120 (183)
T 2pfc_A 82 FNQLAYSAFAPAVLNEEIR-------VLRGWSIDDYCQHQLSSMLI 120 (183)
T ss_dssp HHHHHHHHHHHHHHTTCSG-------GGTTCCHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHhccch-------hhcccCHHHHHHHhccceee
Confidence 3444556777888888765 56699999999999999873
No 17
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=23.10 E-value=40 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.1
Q ss_pred hhhhhhhhcccCCChHhhhhhhccCC
Q psy4234 151 RLQTQVFKLGLAKSIHHARVLIRQRH 176 (177)
Q Consensus 151 RLqtvv~rlglA~si~~ArqlI~hGH 176 (177)
.+..++...|++.|-.+||.+|.+|=
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~gg 382 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGG 382 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTC
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 46777889999999999999999984
No 18
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=20.86 E-value=46 Score=29.79 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=23.1
Q ss_pred hhhhhhhhcccCCChHhhhhhhccCC
Q psy4234 151 RLQTQVFKLGLAKSIHHARVLIRQRH 176 (177)
Q Consensus 151 RLqtvv~rlglA~si~~ArqlI~hGH 176 (177)
.+..++...|++.|-.+||.+|.+|=
T Consensus 370 ~~~~~l~~~~l~~S~~earr~i~~gg 395 (432)
T 1h3f_A 370 WVARLFTLAGLTPSNAEARRLIQNRG 395 (432)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 46777889999999999999999984
Done!