Query psy4234
Match_columns 177
No_of_seqs 146 out of 922
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 20:15:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4234.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4234hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c06a_ d.66.1.2 (A:) Ribosoma 99.8 5E-20 3.7E-24 146.5 1.6 77 81-177 2-78 (159)
2 d2gy9d1 d.66.1.2 (D:2-205) Rib 99.7 3.8E-19 2.7E-23 146.3 1.3 78 80-177 44-121 (204)
3 d2uubd1 d.66.1.2 (D:2-209) Rib 99.7 6.2E-19 4.5E-23 145.4 1.5 78 80-177 48-125 (208)
4 d1vioa2 d.66.1.5 (A:0-57) Pseu 92.5 0.02 1.5E-06 36.3 1.4 27 150-177 2-28 (58)
5 d1kska3 d.66.1.5 (A:1-59) Pseu 91.7 0.029 2.1E-06 35.6 1.4 26 151-177 2-27 (59)
6 d1p9ka_ d.66.1.6 (A:) Hypothet 89.5 0.017 1.2E-06 39.1 -1.4 29 149-177 20-48 (79)
7 d1h3fa2 d.66.1.4 (A:352-432) T 79.6 0.47 3.4E-05 31.5 2.3 27 151-177 19-45 (81)
8 d1jh3a_ d.66.1.4 (A:) Tyrosyl- 72.0 0.91 6.6E-05 31.0 2.1 25 152-176 34-58 (99)
9 d2ckxa1 a.4.1.3 (A:578-660) Te 33.9 19 0.0014 23.2 3.6 29 19-47 1-29 (83)
10 d1w0ua_ a.4.1.4 (A:) Telomeric 19.2 38 0.0028 20.0 2.7 27 18-44 2-28 (55)
No 1
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.75 E-value=5e-20 Score=146.48 Aligned_cols=77 Identities=29% Similarity=0.427 Sum_probs=66.7
Q ss_pred HHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcc
Q psy4234 81 RLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLG 160 (177)
Q Consensus 81 kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlg 160 (177)
|+++||+...+|||++|+||++|+|| +++|.+|.. ..+..|.++..+||+|||++|||+|
T Consensus 2 K~S~yg~qL~eKQK~r~~YGi~EkQf-----~~~~~~A~~---------------~~g~tg~~ll~llE~RlD~vv~r~g 61 (159)
T d1c06a_ 2 KLSEYGLQLQEKQKLRHMYGVNERQF-----RKTFEEAGK---------------MPGKHGENFMILLESRLDNLVYRLG 61 (159)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCHHHH-----HHHHHHHTT---------------SSSTHHHHHHHHHHHCHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHcCccHHHH-----HHHHHHHHh---------------cCCCcchhHHHHHHHHhhhhhccCc
Confidence 46789995555999999999988877 456666632 4678899999999999999999999
Q ss_pred cCCChHhhhhhhccCCC
Q psy4234 161 LAKSIHHARVLIRQRHI 177 (177)
Q Consensus 161 lA~si~~ArqlI~hGHI 177 (177)
||.|+.+|||+|.||||
T Consensus 62 fa~t~~~arQ~v~Hghi 78 (159)
T d1c06a_ 62 LARTRRQARQLVTHGHI 78 (159)
T ss_dssp SSSSHHHHHHHHHTSCE
T ss_pred ccCCHHHHHHHHHhcce
Confidence 99999999999999997
No 2
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=99.71 E-value=3.8e-19 Score=146.26 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=68.4
Q ss_pred HHHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhc
Q psy4234 80 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKL 159 (177)
Q Consensus 80 ~kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rl 159 (177)
.|+++||+...+|||++|+||++|+|| +++|.+|.. ..+..+.++..+||+|||+||||+
T Consensus 44 ~k~S~yg~qL~EKQklr~~YGi~EkQ~-----~~~~~~a~~---------------~~g~tg~~l~~~LE~RLDnvv~R~ 103 (204)
T d2gy9d1 44 PRLSDYGVQLREKQKVRRIYGVLERQF-----RNYYKEAAR---------------LKGNTGENLLALLEGRLDNVVYRM 103 (204)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCHHHH-----HHHHHHHHH---------------SSSCHHHHHHHHHTTBHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHH---------------cCCcHHHHHHHHHHHHHHHHHhhc
Confidence 578999995555999999999987777 456777744 367889999999999999999999
Q ss_pred ccCCChHhhhhhhccCCC
Q psy4234 160 GLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 160 glA~si~~ArqlI~hGHI 177 (177)
|||.|+.+|||||+||||
T Consensus 104 gfa~t~~~ARQ~v~Hghi 121 (204)
T d2gy9d1 104 GFGATRAEARQLVSHKAI 121 (204)
T ss_dssp TSSSSHHHHHHHHHTTCE
T ss_pred cccccHHHHHHHHHhcce
Confidence 999999999999999997
No 3
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=99.71 E-value=6.2e-19 Score=145.44 Aligned_cols=78 Identities=32% Similarity=0.418 Sum_probs=68.6
Q ss_pred HHHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhc
Q psy4234 80 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKL 159 (177)
Q Consensus 80 ~kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rl 159 (177)
+|+++||+...+|||++|+||++|+|| +++|.+|.. ..++.+.++..+||+|||+||||+
T Consensus 48 ~k~S~Yg~qL~EKQKlr~~YGv~EkQf-----r~~~~~A~~---------------~~G~tg~~ll~lLE~Rld~vv~r~ 107 (208)
T d2uubd1 48 RRPSDYAVRLREKQKLRRIYGISERQF-----RNLFEEASK---------------KKGVTGSVFLGLLESRLDNVVYRL 107 (208)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCHHHH-----HHHHHHHHH---------------SSSCHHHHHHHHHHTBHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHHhCcchHHH-----HHHHHHHHh---------------cCCCchHHHHHHHHHHHHHHHHhc
Confidence 468999995555999999999977776 467777744 378899999999999999999999
Q ss_pred ccCCChHhhhhhhccCCC
Q psy4234 160 GLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 160 glA~si~~ArqlI~hGHI 177 (177)
|||.|+.+|||||.||||
T Consensus 108 g~a~t~~~ARQ~v~Hg~i 125 (208)
T d2uubd1 108 GFAVSRRQARQLVRHGHI 125 (208)
T ss_dssp TSSSSHHHHHHHHHTTCE
T ss_pred cccccHHHHHHHHHhcCe
Confidence 999999999999999997
No 4
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=92.48 E-value=0.02 Score=36.29 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=24.9
Q ss_pred hhhhhhhhhcccCCChHhhhhhhccCCC
Q psy4234 150 RRLQTQVFKLGLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 150 RRLqtvv~rlglA~si~~ArqlI~hGHI 177 (177)
.||+.++...+++ |..+|+++|.+|+|
T Consensus 2 mRLD~~Ls~~~~~-SR~~a~~lI~~g~V 28 (58)
T d1vioa2 2 LRLDKFIAENVGL-TRSQATKAIRQSAV 28 (58)
T ss_dssp EEHHHHHHHHHTC-CHHHHHHHHHTTCE
T ss_pred cHHHHHHHHcCCC-CHHHHHHHHHcCeE
Confidence 4899999999988 99999999999986
No 5
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=91.70 E-value=0.029 Score=35.62 Aligned_cols=26 Identities=23% Similarity=0.056 Sum_probs=24.5
Q ss_pred hhhhhhhhcccCCChHhhhhhhccCCC
Q psy4234 151 RLQTQVFKLGLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 151 RLqtvv~rlglA~si~~ArqlI~hGHI 177 (177)
||+.++...+++ |..+|.++|.+|+|
T Consensus 2 RLdk~l~~~~~~-SR~~a~~lI~~g~V 27 (59)
T d1kska3 2 RLDKFIAQQLGV-SRAIAGREIRGNRV 27 (59)
T ss_dssp EHHHHHHHHHTC-CHHHHHHHHHTTCE
T ss_pred cHHHHHHHcCCC-CHHHHHHHHHcCcE
Confidence 899999999988 99999999999986
No 6
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=89.48 E-value=0.017 Score=39.14 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=26.5
Q ss_pred hhhhhhhhhhcccCCChHhhhhhhccCCC
Q psy4234 149 ERRLQTQVFKLGLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 149 eRRLqtvv~rlglA~si~~ArqlI~hGHI 177 (177)
.-||+-++...|++.|..+|.++|.+|+|
T Consensus 20 ~irL~k~L~~~gl~~Sr~eAk~lI~~G~V 48 (79)
T d1p9ka_ 20 HVELCDLLKLEGWSESGAQAKIAIAEGQV 48 (79)
T ss_dssp CCCHHHHHHHHTSCSSSSTTSHHHHHHHH
T ss_pred cEEHHHHHHHCCCccCHHHHHHHHHhCCc
Confidence 35899999999999999999999999975
No 7
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=79.61 E-value=0.47 Score=31.53 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.0
Q ss_pred hhhhhhhhcccCCChHhhhhhhccCCC
Q psy4234 151 RLQTQVFKLGLAKSIHHARVLIRQRHI 177 (177)
Q Consensus 151 RLqtvv~rlglA~si~~ArqlI~hGHI 177 (177)
.|..++...||++|-.+||.+|.+|=|
T Consensus 19 ~l~~ll~~~gl~~S~searRlI~~g~V 45 (81)
T d1h3fa2 19 WVARLFTLAGLTPSNAEARRLIQNRGL 45 (81)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCE
T ss_pred cHHHHHHHcCCCcCHHHHHHHHHcCCE
Confidence 356678899999999999999999843
No 8
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=72.00 E-value=0.91 Score=30.99 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.9
Q ss_pred hhhhhhhcccCCChHhhhhhhccCC
Q psy4234 152 LQTQVFKLGLAKSIHHARVLIRQRH 176 (177)
Q Consensus 152 Lqtvv~rlglA~si~~ArqlI~hGH 176 (177)
+..++...|++.|-.+||.+|.+|=
T Consensus 34 l~~ll~~~~l~~S~seaRrlI~~gg 58 (99)
T d1jh3a_ 34 LVELLVSAGISPSKRQAREDIQNGA 58 (99)
T ss_dssp HHHHHHHHTSCCSHHHHHHHHHSTT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHcCC
Confidence 5556779999999999999999984
No 9
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=33.88 E-value=19 Score=23.23 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=22.2
Q ss_pred CccchhhhhHHHHHHHHhCCCCchhHHHH
Q psy4234 19 RPYEKARLDQELKIIGEYGLRNKREVWRV 47 (177)
Q Consensus 19 ~p~~~~r~~~e~~~~~~Ygl~nk~E~w~~ 47 (177)
+||..+--..=+..+.+||..|..+|.+.
T Consensus 1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~ 29 (83)
T d2ckxa1 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMR 29 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 57877766666778899999998887654
No 10
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.22 E-value=38 Score=20.03 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=19.4
Q ss_pred CCccchhhhhHHHHHHHHhCCCCchhH
Q psy4234 18 RRPYEKARLDQELKIIGEYGLRNKREV 44 (177)
Q Consensus 18 ~~p~~~~r~~~e~~~~~~Ygl~nk~E~ 44 (177)
++||..+--+.=+..+.+||..+-.+|
T Consensus 2 r~~WT~eEd~~L~~~V~~~G~~~W~~I 28 (55)
T d1w0ua_ 2 KQKWTVEESEWVKAGVQKYGEGNWAAI 28 (55)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 467877666666778899998875443
Done!