RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4234
         (177 letters)



>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 159

 Score = 29.0 bits (65), Expect = 0.19
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 120 LRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
            R+            K+    G      LE RL   V++LGLA++   AR L+   HI
Sbjct: 27  FRKTFEEA------GKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHI 78


>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli
           [TaxId: 562]}
          Length = 204

 Score = 27.9 bits (62), Expect = 0.54
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 148 LERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
           LE RL   V+++G   +   AR L+  + I
Sbjct: 92  LEGRLDNVVYRMGFGATRAEARQLVSHKAI 121


>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde
           decarboxylase NbaD {Pseudomonas fluorescens [TaxId:
           294]}
          Length = 331

 Score = 26.7 bits (57), Expect = 1.6
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 5   RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLT- 63
           R PS +   +      +    L+  + ++GE      R +    Y      +    L+  
Sbjct: 254 RPPSEYVDRFFVDSAVFNPGALELLVSVMGE-----DRVMLGSDYPFPLGEQKIGGLVLS 308

Query: 64  --LDEKEQRRLFEGNALLRRLVRI 85
             L E  + ++  GNA   +   I
Sbjct: 309 SNLGESAKDKIISGNA--SKFFNI 330


>d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid
           hydrolase PP1699 {Pseudomonas putida [TaxId: 303]}
          Length = 271

 Score = 26.3 bits (56), Expect = 2.0
 Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 2/29 (6%)

Query: 57  AARELLTLDEKEQRRLFEGNALLRRLVRI 85
              E L    + ++ L    A  R L   
Sbjct: 244 EQFEALGCSAQLRQALLLDTA--RALFGF 270


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.390 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 667,638
Number of extensions: 31933
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 15
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.5 bits)