BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4235
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRIS---GYVAQQDFLIEE 55
+ PSG+GK+T L LN ++ +GEI+++G + T ++++ G V Q+ L
Sbjct: 35 IGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 93
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
+TVL ++ +A + + R+ + +++ +G+ + LSGGQ +R+A+A
Sbjct: 94 MTVLNNIT-LAPMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 151
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
L EP+I+ DEPT+ LD V++++KQLA E ++ H+
Sbjct: 152 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRIS---GYVAQQDFLIEE 55
+ PSG+GK+T L LN ++ +GEI+++G + T ++++ G V Q+ L
Sbjct: 56 IGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
+TVL ++ +A + + R+ + +++ +G+ + LSGGQ +R+A+A
Sbjct: 115 MTVLNNIT-LAPMKV-RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
L EP+I+ DEPT+ LD V++++KQLA E ++ H+
Sbjct: 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ--GEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLE 60
+G+GKTTLL K + GL+ GEI L+G P ++ + GYV Q I TV E
Sbjct: 46 NGSGKTTLL----KILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEE 101
Query: 61 HLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+ F + + +D E+ K I +V+E +G++ LSGGQ++RLA+A L
Sbjct: 102 DVAFSLEIMGLDES----EMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLAR 157
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+ + L DEP + LD S + +L+ L E + +I H+
Sbjct: 158 DTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-------GYVAQQDFLI 53
+ SG+GK+TLL L + +G++ L G + T +S G+V Q +LI
Sbjct: 36 IGASGSGKSTLLYILG-LLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94
Query: 54 EELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
ELT LE++ M K+ ++ E + ++ LG+ + + LSGG+++R+A
Sbjct: 95 PELTALENVIVPMLKMGKPKK----EAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVA 150
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+A L EP +LF DEPT LDS + V+++ ++ ++ H+
Sbjct: 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
+ PSG GKTT +LA + K G + ++L+N P R G V Q L +
Sbjct: 35 LGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK----YREVGMVFQNYALYPHM 90
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV E++ F + RR + E+ K + + L I++ + + LSGGQ++R+ALA
Sbjct: 91 TVFENIAFPLRA---RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARA 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
L+ +P++L DEP + LD+
Sbjct: 148 LVKQPKVLLFDEPLSNLDA 166
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 1 MSPSGAGKTTLL---AALNKRVKGLVQGEIL----LNGCPISRTVMSRISGYVAQQDFLI 53
M PSG+GK+T+L L+K +G V + + L+ +++ +I G+V QQ LI
Sbjct: 37 MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI-GFVFQQFNLI 95
Query: 54 EELTVLEHLQ----FMAKLTM---DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
LT LE+++ F + M +RR LE K +E NH+ + LSGG
Sbjct: 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE--LEERFANHKP----NQLSGG 149
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQ 161
Q++R+A+A L P I+ D+PT LDS + ++ LLK+L E + V+ H
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 1 MSPSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
+ PSG GK+TLL A L G L GE +N P + R G V Q L L
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA----ERGVGMVFQSYALYPHL 90
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+V E++ F KL ++ +N+ + +V E L + H + LSGGQR+R+A+
Sbjct: 91 SVAENMSFGLKLAGAKKEV---INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
L+ EP + DEP + LD+
Sbjct: 148 LVAEPSVFLLDEPLSNLDA 166
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 1 MSPSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
+ PSG GK+TLL A L G L GE +N P + R G V Q L L
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA----ERGVGMVFQSYALYPHL 90
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+V E++ F KL ++ +N+ + +V E L + H + LSGGQR+R+A+
Sbjct: 91 SVAENMSFGLKLAGAKKEV---INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
L+ EP + DEP + LD+
Sbjct: 148 LVAEPSVFLLDEPLSNLDA 166
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM----SRISGYVAQQDFLIEELTV 58
PSG GK+T+ + L +R GEI ++G PI + S+I G+V+Q D I T+
Sbjct: 36 PSGGGKSTIFSLL-ERFYQPTAGEITIDGQPIDNISLENWRSQI-GFVSQ-DSAIMAGTI 92
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITR-VMENLGINHRRQVQISG--LSGGQRKRLALAV 115
E+L + + W L+ R +EN+ +V G +SGGQR+RLA+A
Sbjct: 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
L P+IL DE T LDS S + V L L + R + H+
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSL-MKGRTTLVIAHR 197
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 1 MSPSGAGKTTLL---AALNKRVKGLVQGEIL----LNGCPISRTVMSRISGYVAQQDFLI 53
M PSG+GK+T+L L+K +G V + + L+ +++ +I G+V QQ LI
Sbjct: 37 MGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI-GFVFQQFNLI 95
Query: 54 EELTVLEHLQ----FMAKLTM---DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
LT LE+++ F + M +RR LE K +E NH+ + LSGG
Sbjct: 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE--LEERFANHKP----NQLSGG 149
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQ 161
Q++R+A+A L P I+ D+PT LDS + ++ LLK+L E + V+ H
Sbjct: 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEELT 57
SGAGK+TL+ +N ++ +G +L++G ++ S ++ G + Q L+ T
Sbjct: 40 SGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 98
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V ++ +L T E+ + +T ++ +G+ + S LSGGQ++R+A+A L
Sbjct: 99 VFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 155
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+ P++L CDE T+ LD + +++ LLK +
Sbjct: 156 ASNPKVLLCDEATSALDPATTRSILELLKDI 186
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPI--SRTVMSRIS---GYVAQQ-DFLIEELT 57
+G GK+TL N +K G IL + PI SR + ++ G V Q D + +
Sbjct: 43 NGVGKSTLFQNFNGILKP-SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V + + F A ++ + E+ K + ++ GI H + LS GQ+KR+A+A L
Sbjct: 102 VYQDVSFGA---VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
+ EP++L DEPT GLD + ++ LL ++ E I +I A H
Sbjct: 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 1 MSPSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
+ PSG GK+TLL A L G L GE +N P + R G V Q L L
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA----ERGVGMVFQSYALYPHL 90
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+V E++ F KL ++ +N+ + +V E L + H + LSGGQR+R+A+
Sbjct: 91 SVAENMSFGLKLAGAKKEV---INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147
Query: 117 LLTEPQILFCDEPTTGLDS 135
L+ EP + D+P + LD+
Sbjct: 148 LVAEPSVFLLDQPLSNLDA 166
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIE 54
+ SGAGK+TL+ +N ++ +G +L++G ++ S ++ G + Q L+
Sbjct: 60 IGASGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLS 118
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
TV ++ +L T E+ + +T ++ +G+ + S LSGGQ++R+A+A
Sbjct: 119 SRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
L + P++L CD+ T+ LD + +++ LLK +
Sbjct: 176 RALASNPKVLLCDQATSALDPATTRSILELLKDI 209
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEELT 57
SGAGK+TL+ +N ++ +G +L++G ++ S ++ G + Q L+ T
Sbjct: 63 SGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT 121
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V ++ +L T E+ + +T ++ +G+ + S LSGGQ++R+A+A L
Sbjct: 122 VFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+ P++L CD+ T+ LD + +++ LLK +
Sbjct: 179 ASNPKVLLCDQATSALDPATTRSILELLKDI 209
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 2 SPSGAGKTT---LLAALNKRVKGLVQGEIL----LNGCPISRTVMSRISGYVAQQDFLIE 54
PSG+GK+T ++ L+K +G V + + L+ +++ +I G+V QQ LI
Sbjct: 38 GPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI-GFVFQQFNLIP 96
Query: 55 ELTVLEHLQFM-------AKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQ 107
LT LE+++ A +RR LE K +E NH+ + LSGGQ
Sbjct: 97 LLTALENVELPLIFKYRGAXSGEERRKRALECLKXAE--LEERFANHKP----NQLSGGQ 150
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQ 161
++R+A+A L P I+ DEPT LDS + + LLK+L E + V+ H
Sbjct: 151 QQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-GYVAQQDFLIEELTVL 59
+ P+GAGK+ L + VK +GE+ LNG I+ R G+V Q L L+V
Sbjct: 30 LGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
++ + R +E ++ + + E LGI H + + LSGG+R+R+ALA L+
Sbjct: 89 RNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143
Query: 120 EPQILFCDEPTTGLD 134
+P++L DEP + +D
Sbjct: 144 QPRLLLLDEPLSAVD 158
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVL 59
+ PSG+GK+TLL + K G+I + ++ R G V Q L +TV
Sbjct: 35 LGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+++ F +L R+ E++K + V + L I+ LSGGQ++R+A+A L+
Sbjct: 94 KNIAFPLEL---RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
EP++L DEP + LD+ V LK+L E
Sbjct: 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKE 182
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MSPSGAGKTTLL---AALNKRVKGLVQGEILLNGCPISRTVM---SRISGYVAQQDFLIE 54
+ PSG GKTT L A L + +G + E L P + R V Q L
Sbjct: 38 LGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYP 97
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
TV +++ F KL R+ E++K + V E LG+ + LSGGQR+R+AL
Sbjct: 98 HXTVYDNIAFPLKL---RKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALG 154
Query: 115 VQLLTEPQILFCDEPTTGLDS 135
++ P++ DEP + LD+
Sbjct: 155 RAIIRRPKVFLXDEPLSNLDA 175
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVK---GLVQ--GEILLNGCPISRTVMSRISGYVAQQDFLIEE 55
+ P+GAGKTT L ++ +K G+V G+ ++ R ++S Y+ ++
Sbjct: 47 IGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS----YLPEEAGAYRN 102
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
+ +E+L+F+A ++ E+ + + R E G+ + + ++S S G ++L +A
Sbjct: 103 MQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
L+ P++ DEPT+GLD +A V +LKQ + E ++ + H
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQGEILL---NGCPISRTVMSRISGYVAQQDFLIE 54
+ PSGAGKTT ++A L+ G + + L NG I +I G V Q L
Sbjct: 37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYP 95
Query: 55 ELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
LT E++ F + + M + E+ K + V + L I+H LSGGQ++R+AL
Sbjct: 96 NLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVAL 151
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
A L+ +P +L DEP + LD+ ++ L+K++ + + + + +F D V
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
+ P+GAGKT L + + G G ILL+G + T +S +A F+ + +
Sbjct: 32 LGPTGAGKTLFL----ELIAGFHVPDSGRILLDGKDV--TDLSPEKHDIA---FVYQNYS 82
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
+ H+ L R ++ K + +L I H LSGG+++R+ALA L
Sbjct: 83 LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL 142
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
+T P+IL DEP + LD + N +L L ++++ + I
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 1 MSPSGAGKTTLL---AALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEE 55
+ PSG+GKTT+L A L + KG + G+ + + P R V G V Q L +
Sbjct: 47 LGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV-----GLVFQNYALFQH 101
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
+TV +++ F + ++R E++ + ++ + + LSGGQ++R+ALA
Sbjct: 102 MTVYDNVSFGLR---EKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALAR 158
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
L PQ+L DEP +D+ + ++Q+ E
Sbjct: 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 88/157 (56%), Gaps = 11/157 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
P+G GKTTLL ++ +K L +GEI+ NG PI++ V +I ++ ++ + +++V ++L
Sbjct: 43 PNGIGKTTLLKTISTYLKPL-KGEIIYNGVPITK-VKGKIF-FLPEEIIVPRKISVEDYL 99
Query: 63 QFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEP 121
+ +A L +++NK I +E++ + ++ ++ LS G +R+ LA LL
Sbjct: 100 KAVASLY------GVKVNKNEIMDALESVEVLDLKK-KLGELSQGTIRRVQLASTLLVNA 152
Query: 122 QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
+I D+P +D S + V+ + ++ E IVI +
Sbjct: 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQGEILL---NGCPISRTVMSRISGYVAQQDFLIE 54
+ PSGAGKTT ++A L+ G + + L NG I +I G V Q L
Sbjct: 37 LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYP 95
Query: 55 ELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
LT E++ F + + M + E+ K + V + L I+H LSG Q++R+AL
Sbjct: 96 NLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
A L+ +P +L DEP + LD+ ++ L+K++ + + + + +F D V
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQGEILLNGCP---ISRTVMSRISGYVAQQDFLIE 54
+ PSG GKTT ++A L + +G + L P I R V Q L
Sbjct: 35 LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYP 94
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
+TV +++ F KL R+ E+++ + V E LG+ + LSGGQR+R+AL
Sbjct: 95 HMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151
Query: 115 VQLLTEPQILFCDEPTTGLDS 135
++ +PQ+ DEP + LD+
Sbjct: 152 RAIVRKPQVFLMDEPLSNLDA 172
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 85 RVMENLGINHRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN 143
+ + +GI+ R Q + LSGGQ++R+++A L EP +L DEPT+ LD V+
Sbjct: 135 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 194
Query: 144 LLKQLACESRIVICAIHQ 161
+++QLA E + ++ H+
Sbjct: 195 IMQQLAEEGKTMVVVTHE 212
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 6/165 (3%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGY--VAQQDFLIEELTV 58
+ PSGAGK+T+L L R + G I ++G IS+ + + + V QD ++ T+
Sbjct: 86 VGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGL--SGGQRKRLALAVQ 116
+++++ + I + +R QV GL SGG+++R+A+A
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+L P I+ DE T+ LD+ + + L ++ C +R I H+
Sbjct: 205 ILKAPGIILLDEATSALDTSNERAIQASLAKV-CANRTTIVVAHR 248
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
SG+GK+TL L +R G++L++G ++ + R G V Q + L+ +
Sbjct: 38 SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 96
Query: 59 ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+E + + AKL + I+ + E G N Q +GLSGGQR+
Sbjct: 97 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 146
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
R+A+A L+ P+IL DE T+ LD Y + +V+ C+ R VI H+
Sbjct: 147 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 197
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
SG+GK+TL L +R G++L++G ++ + R G V Q + L+ +
Sbjct: 44 SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
Query: 59 ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+E + + AKL + I+ + E G N Q +GLSGGQR+
Sbjct: 103 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
R+A+A L+ P+IL DE T+ LD Y + +V+ C+ R VI H+
Sbjct: 153 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 203
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
SG+GK+TL L +R G++L++G ++ + R G V Q + L+ +
Sbjct: 40 SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 98
Query: 59 ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+E + + AKL + I+ + E G N Q +GLSGGQR+
Sbjct: 99 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 148
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
R+A+A L+ P+IL DE T+ LD Y + +V+ C+ R VI H+
Sbjct: 149 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 199
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
+ PSG GKTT ++A L + +G + G+ + P R V Q + +
Sbjct: 44 LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK----DRNISMVFQSYAVWPHM 99
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV E++ F K+ ++ E++K + E L I + LSGGQR+R+A+A
Sbjct: 100 TVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 156
Query: 117 LLTEPQILFCDEPTTGLDS 135
++ EP +L DEP + LD+
Sbjct: 157 IVVEPDVLLMDEPLSNLDA 175
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
+ PSG GKTT ++A L + +G + G+ + P R V Q + +
Sbjct: 43 LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK----DRNISMVFQSYAVWPHM 98
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV E++ F K+ ++ E++K + E L I + LSGGQR+R+A+A
Sbjct: 99 TVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 155
Query: 117 LLTEPQILFCDEPTTGLDS 135
++ EP +L DEP + LD+
Sbjct: 156 IVVEPDVLLMDEPLSNLDA 174
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNG-----CPISRTVMSRISGYVAQQDFLIEE 55
+G+GK+TLL V GL++ G++L +G I R + I+ + F E
Sbjct: 42 TGSGKSTLLQI----VAGLIEPTSGDVLYDGERKKGYEIRRNI--GIAFQYPEDQFFAER 95
Query: 56 LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRL 111
V + + F K DR L + + ME +G++ + +V LSGG+++R+
Sbjct: 96 --VFDEVAFAVKNFYPDRDPVPL-----VKKAMEFVGLDFDSFKDRVPFF-LSGGEKRRV 147
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
A+A ++ EP IL DEP GLD +++ ++++ + VI H
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNG-----CPISRTVMSRISGYVAQQDFLIEE 55
+G+GK+TLL V GL++ G++L +G I R + I+ + F E
Sbjct: 44 TGSGKSTLLQI----VAGLIEPTSGDVLYDGERKKGYEIRRNI--GIAFQYPEDQFFAER 97
Query: 56 LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRL 111
V + + F K DR L + + ME +G++ + +V LSGG+++R+
Sbjct: 98 --VFDEVAFAVKNFYPDRDPVPL-----VKKAMEFVGLDFDSFKDRVPFF-LSGGEKRRV 149
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
A+A ++ EP IL DEP GLD +++ ++++ + VI H
Sbjct: 150 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 99 QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
Q +GLSGGQR+R+A+A L+ P+IL DE T+ LD Y + +V+ C+ R VI
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVIII 196
Query: 159 IHQ 161
H+
Sbjct: 197 AHR 199
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEEL 56
+ PSG GK+T++A L +R + GEI ++G I S+I+ + Q+ + +
Sbjct: 1111 VGPSGCGKSTVVALL-ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA--IVSQEPTLFDC 1167
Query: 57 TVLEHLQF--------MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
++ E++ + MA++ R ++ I + E G R + + LSGGQ+
Sbjct: 1168 SIAENIIYGLDPSSVTMAQVEEAARLA--NIHNFIAELPE--GFETRVGDRGTQLSGGQK 1223
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+R+A+A L+ P+IL DE T+ LD+ S V L + A E R I H+
Sbjct: 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHR 1275
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
LSGGQ++R+A+A L+ P+IL DE T+ LD+ S V L + A + R I H+
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-AAKGRTTIIIAHR 612
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
SG+GK+TL L +R G++L++G ++ + R G V Q + L+ +
Sbjct: 44 SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
Query: 59 ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+E + + AKL + I+ + E G N Q +GLSGGQR+
Sbjct: 103 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
R+A+A L+ P+IL D+ T+ LD Y + +V+ C+ R VI H+
Sbjct: 153 RIAIARALVNNPKILIFDQATSALD-YESEHVIMRNMHKICKGRTVIIIAHR 203
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 26/168 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
SG+GK+TL L +R G++L++G ++ + R G V Q + L+ +
Sbjct: 38 SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 96
Query: 59 ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+E + + AKL + I+ + E G N Q +GLSGGQR+
Sbjct: 97 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 146
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
R+A+A L+ P+IL DE T+ LD Y + +V+ C+ R VI
Sbjct: 147 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVII 193
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 26/168 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTV-- 58
SG+GK+TL L +R G++L++G ++ + R G V Q + L+ +
Sbjct: 44 SGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
Query: 59 ---------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+E + + AKL + I+ + E G N Q +GLSGGQR+
Sbjct: 103 ISLANPGMSVEKVIYAAKLA--------GAHDFISELRE--GYNTIVGEQGAGLSGGQRQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
R+A+A L+ P+IL DE T+ LD Y + +V+ C+ R VI
Sbjct: 153 RIAIARALVNNPKILIFDEATSALD-YESEHVIMRNMHKICKGRTVII 199
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT---VMSRIS-GYVAQQDFLI 53
+ +GAGKTT L+A + GLV +G+I+ NG I+ V++R V + +
Sbjct: 38 IGANGAGKTTTLSA----IAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIF 93
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLA 112
ELTV E+L A D+ +L + I + L R Q+ G LSGG+++ LA
Sbjct: 94 PELTVYENLXXGAYNRKDKEGIKRDL-EWIFSLFPRL---KERLKQLGGTLSGGEQQXLA 149
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
+ L + P++L DEP+ GL + V +++++ E ++
Sbjct: 150 IGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
SG GK+TL+ L R + G+IL++G I + + + QQD ++ TV E+
Sbjct: 376 SGGGKSTLIN-LIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN 434
Query: 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLLT 119
+ D + NL + +V G LSGGQ++RL++A L
Sbjct: 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
P IL DE T+ LD S + + L L+ + +I A
Sbjct: 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 533
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS---GYVAQQDFLIEELTVLE 60
SG GK+T++ L +R + G + L+G I + + + G V+Q+ L + ++ E
Sbjct: 1068 SGCGKSTVVQLL-ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAE 1125
Query: 61 HLQFMAKLTMDRRTTWLEL-----NKTITRVMENLGINHRRQVQISG--LSGGQRKRLAL 113
++ + R ++ E+ I + +++L + +V G LSGGQ++R+A+
Sbjct: 1126 NIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
A L+ +P IL DE T+ LD+ S V L + A E R I H+
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSR----ISGYVAQQDFLIEELTVL 59
SG GK+T + L +R+ + G + ++G I RT+ R I G V+Q+ L T+
Sbjct: 425 SGCGKSTTVQ-LMQRLYDPLDGMVSIDGQDI-RTINVRYLREIIGVVSQEPVLFAT-TIA 481
Query: 60 EHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI----SGLSGGQRKRLALA 114
E++++ +TMD ++ +M+ + H+ + + LSGGQ++R+A+A
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMK---LPHQFDTLVGERGAQLSGGQKQRIAIA 538
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
L+ P+IL DE T+ LD+ S VV A E R I H+
Sbjct: 539 RALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHR 584
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS---GYVAQQDFLIEELTVLE 60
SG GK+T++ L +R + G + L+G I + + + G V+Q+ L + ++ E
Sbjct: 1068 SGCGKSTVVQLL-ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAE 1125
Query: 61 HLQFMAKLTMDRRTTWLEL-----NKTITRVMENLGINHRRQVQISG--LSGGQRKRLAL 113
++ + R ++ E+ I + +++L + +V G LSGGQ++R+A+
Sbjct: 1126 NIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
A L+ +P IL DE T+ LD+ S V L + A E R I H+
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSR----ISGYVAQQDFLIEELTVL 59
SG GK+T + L +R+ + G + ++G I RT+ R I G V+Q+ L T+
Sbjct: 425 SGCGKSTTVQ-LMQRLYDPLDGMVSIDGQDI-RTINVRYLREIIGVVSQEPVLFAT-TIA 481
Query: 60 EHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI----SGLSGGQRKRLALA 114
E++++ +TMD ++ +M+ + H+ + + LSGGQ++R+A+A
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMK---LPHQFDTLVGERGAQLSGGQKQRIAIA 538
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
L+ P+IL DE T+ LD+ S VV A E R I H+
Sbjct: 539 RALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHR 584
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEEL 56
+ P+G+GK+TL+ + +K +G + I+ + + Y + F ++E+
Sbjct: 39 IGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 57 TVLEHLQF------MAKLTMDRRTTWL----ELNKTITRVMENLGINHRRQVQISGLSGG 106
TVLE+L + L W+ E+ + +++E L ++H + LSGG
Sbjct: 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
Q K + + L+T P+++ DEP G+ A+++ N + +L + + H+
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEEL 56
+ P+G+GK+TL+ + +K +G + I+ + + Y + F ++E+
Sbjct: 39 IGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 57 TVLEHLQF------MAKLTMDRRTTWL----ELNKTITRVMENLGINHRRQVQISGLSGG 106
TVLE+L + L W+ E+ + +++E L ++H + LSGG
Sbjct: 98 TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
Q K + + L+T P+++ DEP G+ A+++ N + +L + + H+
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 85 RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
+ ++ L + H + + + LSGGQR+ + +A + +E +++ DEPT+ LD + + V++L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170
Query: 145 LKQLA-CESRIVICAIHQPTSGV 166
L LA ++ V+ HQP V
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVV 193
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEEL 56
+ PSG+GK+T+L+ L R+ G I L+G I + + S+I G V+Q+ L
Sbjct: 407 VGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQLNPVWLRSKI-GTVSQEPILFS-C 463
Query: 57 TVLEHLQFMA----KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKR 110
++ E++ + A +T + E+ + + N V G LSGGQ++R
Sbjct: 464 SIAENIAYGADDPSSVTAEEIQRVAEVANAVA-FIRNFPQGFNTVVGEKGVLLSGGQKQR 522
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
+A+A LL P+IL DE T+ LD+ + V L +L +++ A H T
Sbjct: 523 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLST 575
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEEL 56
+ PSG+GK+T+L+ L R+ G I L+G I + + S+I G V+Q+ L
Sbjct: 376 VGPSGSGKSTVLSLL-LRLYDPASGTISLDGHDIRQLNPVWLRSKI-GTVSQEPILFS-C 432
Query: 57 TVLEHLQFMA----KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKR 110
++ E++ + A +T + E+ + + N V G LSGGQ++R
Sbjct: 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVA-FIRNFPQGFNTVVGEKGVLLSGGQKQR 491
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+A+A LL P+IL DE T+ LD+ + V L +L + R V+ H+
Sbjct: 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHR 541
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
+ P+G+GK+T+ AAL + + G++LL+G P+ + + VA Q+ L+ +
Sbjct: 51 VGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 59 LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAV 115
E++ + + + T + + + + +V +G LSGGQR+ +ALA
Sbjct: 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIVICAIHQ 161
L+ +P++L D+ T+ LD+ + V LL + SR V+ HQ
Sbjct: 170 ALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
SG+GK+T+ A+L R + +GEIL++G + ++ + VA Q+ + TV +
Sbjct: 378 SGSGKSTI-ASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436
Query: 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-----LSGGQRKRLALAVQ 116
+ + R +E + M+ + + G LSGGQR+R+A+A
Sbjct: 437 IAYARTEQYSREQ--IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
LL + IL DE T+ LD+ S + L +L ++R + H+ ++ EK D +
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEKADEI 548
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEEL 56
+ P+G+GK+TL+ + +K +G + I+ + + Y + F ++E+
Sbjct: 39 IGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 57 TVLEHLQF------MAKLTMDRRTTWL----ELNKTITRVMENLGINHRRQVQISGLSGG 106
TVLE+L + L W+ E+ + +++E L ++H + LSGG
Sbjct: 98 TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
Q K + + L+T P+++ D+P G+ A+++ N + +L + + H+
Sbjct: 158 QMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 23/172 (13%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELT 57
+ P+GAGK+TLL L + GE L G ++ ++R + Q L +
Sbjct: 43 IGPNGAGKSTLLRLLTGYLSP-SHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101
Query: 58 VLEHLQFMAKL----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
V E +Q M + + DR + + +VM Q LSGG+++R+ L
Sbjct: 102 VSEVIQ-MGRAPYGGSQDR--------QALQQVMAQTDCLALAQRDYRVLSGGEQQRVQL 152
Query: 114 A------VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
A Q P+ LF DEPT+ LD Y + + LL+QL + + +C +
Sbjct: 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV 204
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 6/162 (3%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS--RISGYVAQQDFLIEELTV 58
+ P+G+GKTT++ L R + +G+IL++G I + S R S + QD ++ TV
Sbjct: 387 VGPTGSGKTTIVNLL-MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTV 445
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQ 116
E+L++ D +++L + + +G LS GQR+ LA+
Sbjct: 446 KENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505
Query: 117 LLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACESRIVIC 157
L P+IL DE T+ +D+ + ++ + K + ++ I+I
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
+ P+G+GK+T+ AAL + + G++LL+G P+ + + VA Q+ + ++
Sbjct: 49 VGPNGSGKSTV-AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSL 107
Query: 59 LEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALA 114
E++ + K TM+ T + + L + +V +G LSGGQR+ +ALA
Sbjct: 108 QENIAYGLTQKPTMEE-ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA 166
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
L+ +P +L D+ T+ LD+ S V LL +
Sbjct: 167 RALIRKPCVLILDDATSALDANSQLQVEQLLYE 199
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
SG+GK+T+ A+L R + +G IL++G + ++ + VA Q+ + TV +
Sbjct: 378 SGSGKSTI-ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436
Query: 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-----LSGGQRKRLALAVQ 116
+ + R +E + M+ + I G LSGGQR+R+A+A
Sbjct: 437 IAYARTEEYSREQ--IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
LL + IL DE T+ LD+ S + L +L
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDEL 526
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCPISRT----VMSRISG---YVAQQDFL 52
+ +G GKTT+L L GEI+ N G P S+ V+ R G Y ++
Sbjct: 31 LGKNGVGKTTVLKIL--------AGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 53 IEELTVLEHLQFMA------KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
EL ++ +Q++ K T++ T ++ V E L + + + LSGG
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGG 142
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+RL +A LL E + D+P++ LD N+ +++L +++ VI H
Sbjct: 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNKYVIVVDHD 196
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
+ P+G GKTT L GEI + + T +I Y Q+ F + TV +
Sbjct: 300 LGPNGIGKTTFARIL--------VGEITADEGSV--TPEKQILSYKPQRIFPNYDGTVQQ 349
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
+L+ +K + + + E V + L ++ + ++ LSGG+ ++L +A L E
Sbjct: 350 YLENASKDALSTSSWFFE------EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKE 403
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
+ D+P++ LD V +K++ E + V I S
Sbjct: 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLE 60
SG+GK+T+ A L R + G I L+G + T + R V+Q L + T+
Sbjct: 378 SGSGKSTI-ANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIAN 435
Query: 61 HLQFMAKLTMDRRTTWLELNKT-ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQL 117
++ + A+ R + +EN+ G++ + LSGGQR+R+A+A L
Sbjct: 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
L + +L DE T+ LD+ S + L +L +++ A
Sbjct: 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
+ P+G+GK+T+ AAL + + G++LL+G P+ + + VA Q+ L+ +
Sbjct: 51 VGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 59 LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAV 115
E++ + + + T + + + + +V +G LSGGQR+ +ALA
Sbjct: 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
L+ +P++L D T+ LD+ + V LL +
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVLE 60
+G+GK+T+ L + +G+I + G ++ R + I G V Q L E T+
Sbjct: 55 TGSGKSTIAKLLYRFYD--AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKY 111
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLL 118
++ + D + + +E L V G LSGG+R+R+A+A LL
Sbjct: 112 NILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171
Query: 119 TEPQILFCDEPTTGLDS 135
+P+I+ DE T+ LDS
Sbjct: 172 KDPKIVIFDEATSSLDS 188
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ-GEILLNG---CPISRTVMSRISGYVA-QQDFLIEE 55
M P+GAGK+TL L + V+ GEILL+G +S +R ++A Q +
Sbjct: 35 MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG 94
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI--SGLSGGQRKRLAL 113
+T+ L+ + + R E + + +E L + + G SGG++KR +
Sbjct: 95 VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154
Query: 114 AVQLLTEPQILFCDEPTTGLD 134
L+ EP DE +GLD
Sbjct: 155 LQLLVLEPTYAVLDETDSGLD 175
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 99 QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
++ LSGG+ +R+A+A LL + F DEP++ LD V ++++LA E + V+
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 159 IH 160
H
Sbjct: 271 EH 272
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
+ P+G GKTT +LA + + +G V+ ++ TV + A+ + + EL
Sbjct: 374 VGPNGIGKTTFVKMLAGVEEPTEGKVEWDL---------TVAYKPQYIKAEYEGTVYEL- 423
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
++K+ + L N T +++ LGI + LSGG+ +R+A+A L
Sbjct: 424 -------LSKIDSSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL 472
Query: 118 LTEPQILFCDEPTTGLD 134
L + I DEP+ LD
Sbjct: 473 LRDADIYLLDEPSAYLD 489
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 99 QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
++ LSGG+ +R+A+A LL + F DEP++ LD V ++++LA E + V+
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 159 IH 160
H
Sbjct: 285 EH 286
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
+ P+G GKTT +LA + + +G V+ ++ TV + A+ + + EL
Sbjct: 388 VGPNGIGKTTFVKMLAGVEEPTEGKVEWDL---------TVAYKPQYIKAEYEGTVYEL- 437
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
++K+ + L N T +++ LGI + LSGG+ +R+A+A L
Sbjct: 438 -------LSKIDSSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL 486
Query: 118 LTEPQILFCDEPTTGLD 134
L + I DEP+ LD
Sbjct: 487 LRDADIYLLDEPSAYLD 503
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANN 140
+ + R ++ L + + + I LSGG+ +R A+ + + E + DEP++ LD N
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 141 VVNLLKQLACESRIVICAIHQ 161
+++ L ++ VIC H
Sbjct: 260 AAQIIRSLLAPTKYVICVEHD 280
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 84 TRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135
T V++ L I+ ++ LSGG+ +R+A+ + L I DEP+ LDS
Sbjct: 449 TDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
IS LSGG + +LALA +L IL DEPT LD+ + +VN L
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
++H R I GLSGGQ+ +L LA P ++ DEPT LD S + LK+
Sbjct: 894 VSHSR---IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
IS LSGG + +LALA +L IL DEPT LD+ + +VN L
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
++H R I GLSGGQ+ +L LA P ++ DEPT LD S + LK+
Sbjct: 888 VSHSR---IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
IS LSGG + +LALA +L IL DEPT LD+ + +VN L
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
++H R I GLSGGQ+ +L LA P ++ DEPT LD S + LK+
Sbjct: 894 VSHSR---IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 37/153 (24%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQ 63
+GAGKTTLL LN + G + L G + GY A+ TV +H+
Sbjct: 56 NGAGKTTLLNILNA-YEPATSGTVNLFGKXPGKV------GYSAE--------TVRQHIG 100
Query: 64 FMAKLTMDR----------------------RTTWLELNKTITRVMENLGINHRRQVQIS 101
F++ +++ + E+ ++++ +G + + Q I
Sbjct: 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIG 160
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
LS G+++R+ +A L +PQ+L DEP GLD
Sbjct: 161 YLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 99 QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
+I LSGG+ +R+A+A LL F DEP++ LD N +++L+ E + V+
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 159 IHQ 161
H
Sbjct: 215 EHD 217
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 24/137 (17%)
Query: 1 MSPSGAGKTTL---LAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
+ P+G GKTT LA + + +G ++ ++ + P Y+ + D+ E T
Sbjct: 318 VGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP----------QYI-KADY---EGT 363
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V E ++K+ + L N T +++ LGI +++ LSGG+ +R+A+A L
Sbjct: 364 VYE---LLSKIDASK----LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL 416
Query: 118 LTEPQILFCDEPTTGLD 134
L + I DEP+ LD
Sbjct: 417 LRDADIYLLDEPSAYLD 433
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMSRISGYVAQQDFLIEE--- 55
+ P+G+GKTTLL A + GL+ G I +NG + + I Y+ L E
Sbjct: 36 LGPNGSGKTTLLRA----ISGLLPYSGNIFINGMEVRK-----IRNYIRYSTNLPEAYEI 86
Query: 56 -LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
+TV + + +L R +LE+ K + E L RR+ + LS GQ + +
Sbjct: 87 GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL----RRK--LYKLSAGQSVLVRTS 140
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
+ L ++P+I+ DEP +D+ + + +K+ E +V
Sbjct: 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILV 181
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 28/174 (16%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
+ P+GAGK+TLLA G +G I G P+ S T ++ Y++QQ
Sbjct: 32 VGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQRKRLAL 113
V +L + +KT T ++ + L ++ + + LSGG+ +R+ L
Sbjct: 90 VWHYLTLH------------QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 137
Query: 114 AVQLL-----TEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
A +L P Q+L DEP LD + + +L L+ + ++ + H
Sbjct: 138 AAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSH 191
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 1 MSPSGAGKTTLLAALNKR-----VKGLVQ--GEILLNGCPISRTVMSRISGY-------- 45
M P+G+GK+TL A L R G V+ G+ LL P R +
Sbjct: 33 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 92
Query: 46 VAQQDFLIEELTVLEHLQFMAKLTMDRRT--TWLELNKTITRVMENLGINHRRQVQISGL 103
V+ Q FL L + + + T+DR +E + ++ E+L R V + G
Sbjct: 93 VSNQFFLQTALNAVR--SYRGQETLDRFDFQDLMEEKIALLKMPEDL---LTRSVNV-GF 146
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
SGG++KR + + EP++ DE +GLD + V + + L R I H
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 23/177 (12%)
Query: 1 MSPSGAGKTTLLAALNKR-----VKGLVQ--GEILLNGCPISRTVMSRISGY-------- 45
M P+G+GK+TL A L R G V+ G+ LL P R +
Sbjct: 52 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111
Query: 46 VAQQDFLIEELTVLEHLQFMAKLTMDRRT--TWLELNKTITRVMENLGINHRRQVQISGL 103
V+ Q FL L + + + T+DR +E + ++ E+L R V + G
Sbjct: 112 VSNQFFLQTALNAVR--SYRGQETLDRFDFQDLMEEKIALLKMPEDL---LTRSVNV-GF 165
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
SGG++KR + + EP++ DE +GLD + V + + L R I H
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV 142
LSGG ++R+ +A+ LL +P +L DEPT+ LD + +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII 194
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
+ P+GAGK+TLLA + G +G I G P+ S T ++ Y++QQ
Sbjct: 32 VGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQRKRLAL 113
V +L T + +KT T ++ + L ++ + + LSGG+ +R+ L
Sbjct: 90 VWHYL------------TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 137
Query: 114 AVQLL-----TEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
A +L P Q+L D+P LD + + +L L+ + ++ + H
Sbjct: 138 AAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSH 191
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI-----SRTVMSRISGYVAQQDFLIEE 55
SG GKTTLL L G Q GEI L+G I + V R GY+ Q+ L
Sbjct: 39 SGCGKTTLLRCL----AGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
LTV ++ + L + T E + I ++E GI+ LSGGQ++R ALA
Sbjct: 95 LTVYRNIAY--GLGNGKGRTAQERQR-IEAMLELTGISELAGRYPHELSGGQQQRAALAR 151
Query: 116 QLLTEPQILFCDEPTTGLD 134
L +P+++ DEP + LD
Sbjct: 152 ALAPDPELILLDEPFSALD 170
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS---RISGYVAQQDFLIEELTVLE 60
+G+GK+TLL+A + + +GEI ++G + + G + Q+ F+
Sbjct: 56 TGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFI-------- 105
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQ--------VQISG---LSGGQRK 109
F + ++ I +V + +G+ + V + G LS G ++
Sbjct: 106 ---FSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
+ LA +L++ +IL DEP+ LD + + LKQ + +++C
Sbjct: 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILC 210
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 28/174 (16%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
+ P+GAGK+TLLA G +G I G P+ S T ++ Y++QQ
Sbjct: 32 VGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQRKRLAL 113
V +L + +KT T ++ + L ++ + + LSGG+ +R+ L
Sbjct: 90 VWHYLTLH------------QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 137
Query: 114 AVQLL-----TEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
A +L P Q+L DEP LD + + +L L + ++ + H
Sbjct: 138 AAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
+ P+GAGK+TLLA + G +G I G P+ S T ++ Y++QQ
Sbjct: 32 VGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQRKRLAL 113
V +L T + +KT T ++ + L ++ + + LSGG+ +R+ L
Sbjct: 90 VWHYL------------TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 137
Query: 114 AVQLL-----TEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
A +L P Q+L D+P LD + + +L L+ + ++ + H
Sbjct: 138 AAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSH 191
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQF 64
G GK++LL+AL + V+G + + G YV QQ + I+ ++ E++ F
Sbjct: 41 GCGKSSLLSALLAEMDK-VEGHVAIKGS----------VAYVPQQAW-IQNDSLRENILF 88
Query: 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLLTEPQ 122
+L + ++ + +E L R ++ G LSGGQ++R++LA + +
Sbjct: 89 GCQLEEPYYRSVIQACALLPD-LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147
Query: 123 ILFCDEPTTGLDSYSA----NNVVNLLKQLACESRIVI 156
I D+P + +D++ NV+ L ++RI++
Sbjct: 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV 185
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 55 ELTVLEHLQFMAKLTMDRRTTWL--ELNKTITRVME---NLGINHRR-QVQISGLSGGQR 108
EL++ E L+F+ L + R + EL K I + +E ++G+ + + LSGG+
Sbjct: 411 ELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGES 470
Query: 109 KRLALAVQLLT--EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+R+ LA Q+ + I DEPT GL ++ LK+L VI H
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRKRL 111
I ++TV E L+F + +RT +V+ ++G+ + + Q + LSGG+ +R+
Sbjct: 764 ILDMTVDEALEFFKNIPSIKRTL---------QVLHDVGLGYVKLGQPATTLSGGEAQRI 814
Query: 112 ALAVQLL---TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
LA +L T + DEPT GL +V +L +L VI H
Sbjct: 815 KLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
+ +G+GK+TL+ L R+ +G + ++ + + + G+++ Q+ ++ T+
Sbjct: 375 LGETGSGKSTLMN-LIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQ 116
E+L++ + D I + +L + +V+ G SGGQ++RL++A
Sbjct: 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQL--ACESRIVICAIHQPTSGVFEK 169
L+ +P++L D+ T+ +D + +++ LK+ C + I+ I PT+ + +K
Sbjct: 494 LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKI--PTALLADK 546
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
+ P+G+GK+T+ AAL + + G++LL+G P+ + + VA Q+ L+ +
Sbjct: 51 VGPNGSGKSTV-AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 59 LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAV 115
E++ + + + T + + + + +V +G L+ GQR+ +ALA
Sbjct: 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALAR 169
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
L+ +P++L D T+ LD+ + V LL +
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD ++ V + K +A ++RI++ +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD ++ V + K +A ++RI++ +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD ++ V + K +A ++RI++ +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD ++ V + K +A ++RI++ +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD ++ V + K +A ++RI++ +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 217
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 85 RVMENLGINHRRQVQISG-LSGGQRKRLALAVQL---LTEPQILFCDEPTTGLDSYSANN 140
R + ++G+ + R Q + LSGG+ +R+ LA +L T + DEPTTGL
Sbjct: 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRK 904
Query: 141 VVNLLKQLACESRIVICAIHQ 161
++N++ L + VI H
Sbjct: 905 LLNVINGLVDKGNTVIVIEHN 925
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.9 bits (76), Expect = 0.061, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 68 LTMDRRTTWLELNKTITRVMENL---GINHRRQVQ-ISGLSGGQRKRLALAVQLLTEPQ- 122
LT+D + I R ++ L G+ + R Q + LSGG+ +R+ LA +L +
Sbjct: 692 LTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRG 751
Query: 123 --ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+ DEPTTGL + L +L VI H+
Sbjct: 752 GTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRKRLAL 113
++TV + L F A + +R LE + ++G+ + + Q + LSGG+ +R+ L
Sbjct: 504 DMTVEDALDFFASIPKIKRK--LE-------TLYDVGLGYMKLGQPATTLSGGEAQRVKL 554
Query: 114 AVQLLTEPQ---ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
A +L + DEPTTGL ++++L +L V+ H
Sbjct: 555 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLA 112
E L + L+ K R E+ + ++N+G+++ + +G LSGG+ +R+
Sbjct: 154 EALAFFDGLELTEKEAQIARLILREIRDRLG-FLQNVGLDYLTLSRSAGTLSGGEAQRIR 212
Query: 113 LAVQLLTE-PQILFC-DEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
LA Q+ + +L+ DEP+ GL + ++ LK + +I H
Sbjct: 213 LATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD + + + K +A ++RI++ +
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD + + + K +A ++RI++ +
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD + + + K +A ++RI++ +
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRKRLAL 113
++TV + L F A + +R LE + ++G+ + + Q + LSGG+ +R+ L
Sbjct: 806 DMTVEDALDFFASIPKIKRK--LE-------TLYDVGLGYMKLGQPATTLSGGEAQRVKL 856
Query: 114 AVQLLTEPQ---ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
A +L + DEPTTGL ++++L +L V+ H
Sbjct: 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 906
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLA 112
E L + L+ K R E+ + ++N+G+++ + +G LSGG+ +R+
Sbjct: 456 EALAFFDGLELTEKEAQIARLILREIRDRLG-FLQNVGLDYLTLSRSAGTLSGGEAQRIR 514
Query: 113 LAVQLLTE-PQILFC-DEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
LA Q+ + +L+ DEP+ GL + ++ LK + +I H
Sbjct: 515 LATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 102 GLSGGQRKRLALAVQL-LTEP-----QILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
GLSGG+R +++++ + L E F DE + LD+ + + ++LK+L ++++
Sbjct: 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVI 338
Query: 156 ICAIHQ 161
+ H
Sbjct: 339 VFITHD 344
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 103 LSGGQR------KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGG+R RLA+++ L E +L DEPT LD ++ ++++ + VI
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 157 CAIHQ 161
H
Sbjct: 329 LVSHD 333
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 103 LSGGQR------KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGG+R RLA+++ L E +L DEPT LD ++ ++++ + VI
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 157 CAIHQ 161
H
Sbjct: 309 LVSHD 313
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD + + + K +A ++RI++ +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD + + + K +A ++RI++ +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 103 LSGGQR------KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGG+R RLA+++ L E +L DEPT LD ++ ++++ + VI
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 157 CAIHQ 161
H
Sbjct: 144 LVSHD 148
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICA 158
LSGGQR R++LA + + + D P LD + + + K +A ++RI++ +
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 103 LSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGG+R RLA+++ L E +L DEPT LD ++ ++++ + VI
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 157 CAIHQ 161
H
Sbjct: 118 LVSHD 122
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 103 LSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGG+R RLA+++ L E +L DEPT LD ++ ++++ + VI
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 157 CAIHQ 161
H
Sbjct: 149 LVSHD 153
>pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 99 QISGLSGGQRKRLALA----VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
+I +SGG++ ALA +Q DE LD + V +L+K+ + ES+
Sbjct: 60 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQF 119
Query: 155 VICAIHQ 161
++ +
Sbjct: 120 IVITLRD 126
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 0.50, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKR 110
+ E L + L+ K R E+ + ++N+G+++ + +G LSGG+ +R
Sbjct: 454 VTEALAFFDGLELTEKEAQIARLILREIRDRLG-FLQNVGLDYLTLSRSAGTLSGGEAQR 512
Query: 111 LALAVQLLTE-PQILFC-DEPTTGLDSYSANNVVNLLK 146
+ LA Q+ + +L+ DEP+ GL + ++ LK
Sbjct: 513 IRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLK 550
Score = 30.4 bits (67), Expect = 0.66, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 83 ITRVMENL---GINHRRQVQ-ISGLSGGQRKRLALAVQLLTEPQ---ILFCDEPTTGLDS 135
I R +E L G+ + + Q + LSGG+ +R+ LA +L + DEPTTGL
Sbjct: 822 IKRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHV 881
Query: 136 YSANNVVNLLKQLACESRIVICAIH 160
++++L +L V+ H
Sbjct: 882 DDIARLLDVLHRLVDNGDTVLVIEH 906
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 95 RRQVQISGLSGGQRKRLALAVQLL---TEPQILFC-DEPTTGLDSYSANNVVNLLKQLAC 150
RR ++S LSGG++ + LA+ +P + DE + LD Y+A LLK+ +
Sbjct: 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK 271
Query: 151 ESRIVIC 157
++ ++
Sbjct: 272 HTQFIVI 278
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 102 GLSGGQRKRLALAVQL-LTEP-----QILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
GLSGG+R +++++ L E F DE + LD+ + + ++LK+L ++++
Sbjct: 279 GLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVI 338
Query: 156 ICAIHQ 161
+ H
Sbjct: 339 VFITHD 344
>pdb|1XEX|B Chain B, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 99 QISGLSGGQRKRLALA----VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
+I +SGG++ ALA +Q D+ LD + V +L+K+ + ES+
Sbjct: 60 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDQIDAHLDDANVKRVADLIKESSKESQF 119
Query: 155 VICAIHQ 161
++ +
Sbjct: 120 IVITLRD 126
>pdb|3KTA|B Chain B, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|D Chain D, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 173
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 99 QISGLSGGQRKRLALA----VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
+I SGG++ ALA +Q DE LD + V +L+K+ + ES+
Sbjct: 61 RIEAXSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQF 120
Query: 155 VICAIHQ 161
++ +
Sbjct: 121 IVITLRD 127
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 103 LSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
L GG+R RLA+++ L E +L DEPT LD ++ ++++ + VI
Sbjct: 54 LRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 113
Query: 157 CAIHQ 161
H
Sbjct: 114 LVSHD 118
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 354
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 99 QISGLSGGQRKRLALA----VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
+I SGG++ ALA +Q DE LD + V +L+K+ + ES+
Sbjct: 242 RIEAXSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQF 301
Query: 155 VICAIHQ 161
++ +
Sbjct: 302 IVITLRD 308
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 19 VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
KG+ G + L G IS V++RISG A+ + T
Sbjct: 290 AKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYT 328
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 49 QDFLIEELT--VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSG 105
D L E+L+ + E + LT + + + ++ + RVME LG+N ++V+ ++G S
Sbjct: 40 DDALSEKLSDIIFEGPADVLTLTANAQPALMAVSMAVIRVMEQLGLNVEKKVKFVAGHSL 99
Query: 106 GQRKRLALA 114
G+ L A
Sbjct: 100 GEYSALCAA 108
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 123 ILFCDEPT-TGLDSYSANNVVNLLKQL 148
+LFCDE LD Y + NVV L+QL
Sbjct: 1120 VLFCDEINLPKLDKYGSQNVVLFLRQL 1146
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 123 ILFCDEPT-TGLDSYSANNVVNLLKQL 148
+LFCDE LD Y + NVV L+QL
Sbjct: 1339 VLFCDEINLPKLDKYGSQNVVLFLRQL 1365
>pdb|1OUT|B Chain B, Trout Hemoglobin I
pdb|1OUU|B Chain B, Carbonmonoxy Trout Hemoglobin I
pdb|1OUU|D Chain D, Carbonmonoxy Trout Hemoglobin I
Length = 146
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 14 ALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTMD 71
AL+K VK + G IL +S T +++ +V +F L + LT++ +F A T +
Sbjct: 70 ALDKAVKNM--GNILATYKSLSETHANKL--FVDPDNFRVLADVLTIVIAAKFGASFTPE 125
Query: 72 RRTTWLELNKTITRVM 87
+ TW + K + M
Sbjct: 126 IQATWQKFMKVVVAAM 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,787,867
Number of Sequences: 62578
Number of extensions: 162695
Number of successful extensions: 552
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 143
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)