Query psy4235
Match_columns 197
No_of_seqs 266 out of 2577
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:16:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4E-60 8.6E-65 365.3 18.4 189 1-194 34-226 (240)
2 COG1135 AbcC ABC-type metal io 100.0 9.6E-57 2.1E-61 362.3 17.0 188 1-194 38-232 (339)
3 COG1125 OpuBA ABC-type proline 100.0 8.4E-56 1.8E-60 348.3 17.1 188 1-194 33-226 (309)
4 COG3839 MalK ABC-type sugar tr 100.0 9.4E-55 2E-59 360.2 19.0 188 1-194 35-224 (338)
5 COG1118 CysA ABC-type sulfate/ 100.0 2.3E-54 5E-59 348.0 17.7 190 1-194 34-228 (345)
6 COG1127 Ttg2A ABC-type transpo 100.0 4E-54 8.6E-59 336.5 18.2 188 1-193 40-235 (263)
7 COG3842 PotA ABC-type spermidi 100.0 2.2E-54 4.7E-59 359.7 17.2 188 1-193 37-226 (352)
8 COG1120 FepC ABC-type cobalami 100.0 6E-54 1.3E-58 343.6 16.5 190 1-193 34-228 (258)
9 COG1131 CcmA ABC-type multidru 100.0 3.7E-53 8.1E-58 349.2 21.6 189 1-195 37-228 (293)
10 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-53 3.1E-58 336.4 18.2 172 1-179 35-207 (248)
11 COG1136 SalX ABC-type antimicr 100.0 4.5E-53 9.7E-58 332.6 20.5 175 1-182 37-220 (226)
12 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.9E-53 8.4E-58 337.5 19.4 189 1-193 36-227 (254)
13 COG4555 NatA ABC-type Na+ tran 100.0 5.3E-53 1.2E-57 322.4 15.6 187 1-193 34-222 (245)
14 COG3840 ThiQ ABC-type thiamine 100.0 2.6E-52 5.6E-57 314.2 15.6 187 1-193 31-219 (231)
15 COG3638 ABC-type phosphate/pho 100.0 2.6E-52 5.7E-57 325.5 15.1 190 1-193 36-237 (258)
16 PRK11650 ugpC glycerol-3-phosp 100.0 3.9E-51 8.5E-56 345.2 22.2 187 1-193 36-224 (356)
17 TIGR02314 ABC_MetN D-methionin 100.0 6.2E-51 1.4E-55 342.0 22.6 187 1-193 37-230 (343)
18 PRK13537 nodulation ABC transp 100.0 6.9E-51 1.5E-55 337.9 22.2 188 1-194 39-228 (306)
19 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-50 2.6E-55 342.0 22.1 187 1-193 36-224 (353)
20 PRK11432 fbpC ferric transport 100.0 1.5E-50 3.2E-55 341.0 22.3 187 1-193 38-226 (351)
21 COG2884 FtsE Predicted ATPase 100.0 6E-51 1.3E-55 308.5 17.7 180 1-186 34-219 (223)
22 TIGR01188 drrA daunorubicin re 100.0 1.8E-50 3.9E-55 335.0 21.9 188 1-194 25-214 (302)
23 COG1122 CbiO ABC-type cobalt t 100.0 6.4E-51 1.4E-55 324.8 18.3 188 1-194 36-229 (235)
24 TIGR01186 proV glycine betaine 100.0 2.7E-50 5.7E-55 340.1 22.6 187 1-193 25-219 (363)
25 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-50 5E-55 340.9 22.2 188 1-194 37-229 (362)
26 cd03261 ABC_Org_Solvent_Resist 100.0 5.6E-50 1.2E-54 320.9 21.4 188 1-193 32-226 (235)
27 PRK10851 sulfate/thiosulfate t 100.0 5.7E-50 1.2E-54 337.8 22.2 190 1-193 34-226 (353)
28 PRK09452 potA putrescine/sperm 100.0 6.3E-50 1.4E-54 339.5 22.3 187 1-193 46-234 (375)
29 PRK13536 nodulation factor exp 100.0 8.5E-50 1.8E-54 335.2 22.6 188 1-194 73-262 (340)
30 COG1124 DppF ABC-type dipeptid 100.0 2.9E-50 6.2E-55 315.7 17.8 186 1-194 39-232 (252)
31 COG1117 PstB ABC-type phosphat 100.0 1.3E-50 2.9E-55 311.8 14.8 186 1-193 39-237 (253)
32 PRK11607 potG putrescine trans 100.0 1.9E-49 4.2E-54 336.9 22.4 187 1-193 51-239 (377)
33 PRK11000 maltose/maltodextrin 100.0 2.6E-49 5.5E-54 335.8 22.5 187 1-193 35-223 (369)
34 COG0411 LivG ABC-type branched 100.0 4.1E-50 8.9E-55 314.9 15.1 190 1-193 36-239 (250)
35 TIGR01288 nodI ATP-binding ABC 100.0 4.6E-49 9.9E-54 326.7 22.1 188 1-194 36-225 (303)
36 TIGR01187 potA spermidine/putr 100.0 6.6E-49 1.4E-53 328.5 22.9 187 1-193 2-190 (325)
37 cd03265 ABC_DrrA DrrA is the A 100.0 5.6E-49 1.2E-53 312.3 21.1 185 1-191 32-219 (220)
38 cd03219 ABC_Mj1267_LivG_branch 100.0 7.6E-49 1.6E-53 314.4 22.0 190 1-193 32-232 (236)
39 COG4175 ProV ABC-type proline/ 100.0 5.8E-50 1.3E-54 323.4 15.3 187 1-193 60-254 (386)
40 PRK11153 metN DL-methionine tr 100.0 6.4E-49 1.4E-53 330.7 22.2 187 1-193 37-230 (343)
41 TIGR00960 3a0501s02 Type II (G 100.0 4.5E-49 9.8E-54 311.9 19.2 175 1-181 35-215 (216)
42 cd03296 ABC_CysA_sulfate_impor 100.0 1.6E-48 3.5E-53 313.3 22.3 190 1-193 34-226 (239)
43 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-48 2.5E-53 309.0 20.7 180 1-186 32-213 (213)
44 cd03218 ABC_YhbG The ABC trans 100.0 1.6E-48 3.6E-53 311.7 21.8 186 1-192 32-221 (232)
45 TIGR03522 GldA_ABC_ATP gliding 100.0 2.4E-48 5.2E-53 322.1 21.8 187 1-194 34-222 (301)
46 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.1E-48 6.7E-53 308.0 21.5 181 1-188 36-218 (220)
47 cd03258 ABC_MetN_methionine_tr 100.0 2.5E-48 5.3E-53 311.0 21.0 187 1-193 37-230 (233)
48 PRK10070 glycine betaine trans 100.0 2.9E-48 6.2E-53 331.3 22.5 187 1-193 60-254 (400)
49 COG1137 YhbG ABC-type (unclass 100.0 6.2E-50 1.3E-54 305.2 10.8 189 1-193 36-228 (243)
50 PRK09536 btuD corrinoid ABC tr 100.0 1.7E-48 3.8E-53 332.8 20.8 189 1-192 35-227 (402)
51 COG4152 ABC-type uncharacteriz 100.0 3.8E-49 8.2E-54 309.0 15.2 189 1-196 34-222 (300)
52 cd03256 ABC_PhnC_transporter A 100.0 2.7E-48 5.8E-53 312.0 20.4 190 1-193 33-234 (241)
53 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.1E-48 1.3E-52 315.1 22.7 187 1-193 56-250 (269)
54 cd03266 ABC_NatA_sodium_export 100.0 3E-48 6.4E-53 307.5 20.1 179 1-185 37-217 (218)
55 PRK13637 cbiO cobalt transport 100.0 5.6E-48 1.2E-52 318.0 22.0 187 1-193 39-234 (287)
56 TIGR02142 modC_ABC molybdenum 100.0 5.1E-48 1.1E-52 326.6 22.2 185 1-193 29-221 (354)
57 PRK09493 glnQ glutamine ABC tr 100.0 7.4E-48 1.6E-52 309.6 21.7 188 1-193 33-225 (240)
58 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.6E-48 7.8E-53 307.1 19.2 174 1-181 36-217 (218)
59 PRK13651 cobalt transporter AT 100.0 5.2E-48 1.1E-52 320.4 20.9 187 1-193 39-254 (305)
60 cd03263 ABC_subfamily_A The AB 100.0 6.6E-48 1.4E-52 305.9 20.4 184 1-191 34-219 (220)
61 cd03269 ABC_putative_ATPase Th 100.0 5E-48 1.1E-52 304.7 19.6 178 1-185 32-209 (210)
62 TIGR02315 ABC_phnC phosphonate 100.0 3.9E-48 8.4E-53 311.5 19.4 188 1-191 34-233 (243)
63 PRK11831 putative ABC transpor 100.0 1E-47 2.3E-52 313.7 22.1 188 1-193 39-233 (269)
64 PRK15079 oligopeptide ABC tran 100.0 1E-47 2.2E-52 321.7 22.4 189 1-193 53-251 (331)
65 PRK11144 modC molybdate transp 100.0 6E-48 1.3E-52 325.8 21.2 181 1-193 30-218 (352)
66 PRK11264 putative amino-acid A 100.0 1.1E-47 2.3E-52 310.2 21.8 188 1-193 35-233 (250)
67 cd03301 ABC_MalK_N The N-termi 100.0 9.9E-48 2.1E-52 303.5 21.0 180 1-186 32-213 (213)
68 cd03226 ABC_cobalt_CbiO_domain 100.0 3.6E-48 7.7E-53 304.6 18.4 172 1-182 32-204 (205)
69 cd03224 ABC_TM1139_LivF_branch 100.0 7.3E-48 1.6E-52 306.0 20.2 185 1-193 32-221 (222)
70 TIGR03415 ABC_choXWV_ATP choli 100.0 1.1E-47 2.5E-52 325.6 22.3 187 1-193 56-254 (382)
71 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-47 2.4E-52 308.9 21.2 186 1-192 33-224 (242)
72 cd03260 ABC_PstB_phosphate_tra 100.0 6.5E-48 1.4E-52 307.4 19.2 183 1-190 32-226 (227)
73 cd03264 ABC_drug_resistance_li 100.0 8.9E-48 1.9E-52 303.5 19.3 179 1-186 31-211 (211)
74 cd03268 ABC_BcrA_bacitracin_re 100.0 8E-48 1.7E-52 303.1 18.9 176 1-186 32-208 (208)
75 PRK13643 cbiO cobalt transport 100.0 1.7E-47 3.6E-52 315.3 21.6 186 1-193 38-233 (288)
76 PRK13641 cbiO cobalt transport 100.0 2.3E-47 5E-52 314.3 21.7 186 1-193 39-234 (287)
77 PRK13634 cbiO cobalt transport 100.0 1.7E-47 3.7E-52 315.5 20.9 186 1-193 39-235 (290)
78 cd03297 ABC_ModC_molybdenum_tr 100.0 2.3E-47 5E-52 301.8 20.5 178 1-186 29-214 (214)
79 TIGR02673 FtsE cell division A 100.0 1.7E-47 3.7E-52 302.4 19.6 173 1-178 34-212 (214)
80 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.9E-47 4.1E-52 301.6 19.7 179 1-185 30-210 (211)
81 cd03292 ABC_FtsE_transporter F 100.0 2E-47 4.3E-52 301.9 19.7 175 1-181 33-213 (214)
82 PRK13647 cbiO cobalt transport 100.0 2.9E-47 6.2E-52 311.9 21.3 185 1-191 37-225 (274)
83 PRK10895 lipopolysaccharide AB 100.0 3.4E-47 7.3E-52 305.9 21.2 188 1-193 35-226 (241)
84 TIGR01184 ntrCD nitrate transp 100.0 2.8E-47 6E-52 304.7 20.4 185 1-191 17-202 (230)
85 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7E-47 1.5E-51 303.3 22.4 187 1-194 33-222 (236)
86 PRK13650 cbiO cobalt transport 100.0 2.8E-47 6.1E-52 312.7 20.4 186 1-193 39-229 (279)
87 PRK11629 lolD lipoprotein tran 100.0 7.2E-47 1.6E-51 302.6 22.1 180 1-187 41-228 (233)
88 PRK13631 cbiO cobalt transport 100.0 4.7E-47 1E-51 316.5 21.7 185 1-192 58-264 (320)
89 COG4148 ModC ABC-type molybdat 100.0 2.2E-48 4.7E-53 309.8 13.0 181 1-193 30-218 (352)
90 PRK10908 cell division protein 100.0 5.1E-47 1.1E-51 301.4 20.7 177 1-183 34-216 (222)
91 TIGR00972 3a0107s01c2 phosphat 100.0 7.7E-47 1.7E-51 304.9 22.0 186 1-193 33-232 (247)
92 COG0410 LivF ABC-type branched 100.0 2.1E-47 4.6E-52 297.5 17.9 187 1-194 35-227 (237)
93 PRK10619 histidine/lysine/argi 100.0 7.9E-47 1.7E-51 306.6 22.0 187 1-192 37-240 (257)
94 PRK10771 thiQ thiamine transpo 100.0 6E-47 1.3E-51 303.0 20.9 187 1-193 31-219 (232)
95 PRK13646 cbiO cobalt transport 100.0 5E-47 1.1E-51 312.2 21.0 186 1-193 39-235 (286)
96 cd03262 ABC_HisP_GlnQ_permease 100.0 3.1E-47 6.8E-52 300.6 19.0 176 1-181 32-212 (213)
97 PRK11300 livG leucine/isoleuci 100.0 7E-47 1.5E-51 306.3 21.5 189 1-192 37-242 (255)
98 cd03234 ABCG_White The White s 100.0 1.2E-46 2.5E-51 300.2 22.1 185 1-186 39-226 (226)
99 cd03225 ABC_cobalt_CbiO_domain 100.0 3.7E-47 8.1E-52 299.8 18.7 173 1-178 33-209 (211)
100 PRK11124 artP arginine transpo 100.0 7.8E-47 1.7E-51 303.9 20.9 186 1-192 34-229 (242)
101 PRK11308 dppF dipeptide transp 100.0 1.1E-46 2.4E-51 315.0 22.6 188 1-193 47-244 (327)
102 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-46 2.5E-51 302.8 21.7 188 1-192 34-230 (242)
103 PRK11614 livF leucine/isoleuci 100.0 7.6E-47 1.6E-51 303.2 20.3 184 1-192 37-225 (237)
104 TIGR02211 LolD_lipo_ex lipopro 100.0 8.8E-47 1.9E-51 299.7 20.3 176 1-183 37-220 (221)
105 cd03257 ABC_NikE_OppD_transpor 100.0 1.1E-46 2.3E-51 300.3 20.8 182 1-186 37-228 (228)
106 PRK11248 tauB taurine transpor 100.0 1.4E-46 3E-51 304.9 21.7 180 1-187 33-214 (255)
107 PRK13649 cbiO cobalt transport 100.0 1.3E-46 2.8E-51 308.9 21.7 186 1-193 39-234 (280)
108 cd03235 ABC_Metallic_Cations A 100.0 4.5E-47 9.7E-52 299.9 18.2 177 1-182 31-210 (213)
109 TIGR01277 thiQ thiamine ABC tr 100.0 1.5E-46 3.2E-51 297.1 21.1 181 1-187 30-212 (213)
110 TIGR03005 ectoine_ehuA ectoine 100.0 1.9E-46 4.1E-51 303.5 21.9 188 1-193 32-236 (252)
111 COG4598 HisP ABC-type histidin 100.0 1.1E-47 2.4E-52 289.0 13.3 188 1-193 38-241 (256)
112 PRK14247 phosphate ABC transpo 100.0 2.6E-46 5.7E-51 302.2 22.3 188 1-192 35-233 (250)
113 PRK11022 dppD dipeptide transp 100.0 2.6E-46 5.6E-51 312.8 22.9 189 1-193 39-243 (326)
114 PRK13652 cbiO cobalt transport 100.0 2.1E-46 4.5E-51 307.3 21.8 187 1-193 36-227 (277)
115 TIGR02770 nickel_nikD nickel i 100.0 2.3E-46 4.9E-51 299.3 21.5 187 1-193 18-215 (230)
116 PRK13638 cbiO cobalt transport 100.0 2E-46 4.3E-51 306.4 21.6 187 1-193 33-225 (271)
117 TIGR02769 nickel_nikE nickel i 100.0 2E-46 4.2E-51 305.6 21.5 188 1-193 43-240 (265)
118 PRK13636 cbiO cobalt transport 100.0 1.7E-46 3.6E-51 308.7 21.0 187 1-193 38-231 (283)
119 PRK13548 hmuV hemin importer A 100.0 1.9E-46 4E-51 304.7 21.0 186 1-192 34-229 (258)
120 PRK13644 cbiO cobalt transport 100.0 1.8E-46 3.9E-51 307.2 21.0 186 1-193 34-224 (274)
121 PRK13635 cbiO cobalt transport 100.0 1.8E-46 3.8E-51 308.0 20.8 186 1-193 39-229 (279)
122 PRK11231 fecE iron-dicitrate t 100.0 1.5E-46 3.2E-51 304.6 19.7 189 1-192 34-226 (255)
123 PRK14268 phosphate ABC transpo 100.0 4.1E-46 8.9E-51 302.6 21.7 186 1-193 44-242 (258)
124 PRK10584 putative ABC transpor 100.0 4.4E-46 9.6E-51 297.0 21.4 177 1-184 42-226 (228)
125 PRK10575 iron-hydroxamate tran 100.0 2E-46 4.2E-51 305.6 19.7 189 1-192 43-236 (265)
126 PRK15093 antimicrobial peptide 100.0 5.1E-46 1.1E-50 311.7 22.5 191 1-193 39-248 (330)
127 PRK13632 cbiO cobalt transport 100.0 4E-46 8.7E-51 304.7 21.3 186 1-193 41-231 (271)
128 PRK13639 cbiO cobalt transport 100.0 4.1E-46 8.9E-51 305.2 21.3 187 1-193 34-226 (275)
129 PRK09473 oppD oligopeptide tra 100.0 5.7E-46 1.2E-50 311.1 22.6 188 1-193 48-251 (330)
130 PRK10253 iron-enterobactin tra 100.0 2.8E-46 6.1E-51 304.7 20.2 189 1-192 39-232 (265)
131 PRK11247 ssuB aliphatic sulfon 100.0 2.5E-46 5.3E-51 303.7 19.7 174 1-188 44-218 (257)
132 PRK13549 xylose transporter AT 100.0 1.7E-46 3.8E-51 330.6 20.3 189 1-191 37-230 (506)
133 TIGR03740 galliderm_ABC gallid 100.0 4.3E-46 9.3E-51 296.3 20.6 179 1-190 32-210 (223)
134 TIGR03410 urea_trans_UrtE urea 100.0 3.9E-46 8.4E-51 297.7 20.1 182 1-191 32-219 (230)
135 TIGR01978 sufC FeS assembly AT 100.0 9.2E-46 2E-50 297.6 22.2 190 1-192 32-233 (243)
136 TIGR03873 F420-0_ABC_ATP propo 100.0 4.1E-46 8.9E-51 302.2 20.1 189 1-192 33-225 (256)
137 cd03299 ABC_ModC_like Archeal 100.0 1.1E-45 2.4E-50 296.3 22.3 187 1-193 31-219 (235)
138 PRK14267 phosphate ABC transpo 100.0 8.8E-46 1.9E-50 299.6 21.9 188 1-192 36-236 (253)
139 PRK14250 phosphate ABC transpo 100.0 4.6E-46 9.9E-51 299.5 19.7 182 1-193 35-221 (241)
140 PLN03211 ABC transporter G-25; 100.0 7.3E-46 1.6E-50 334.2 23.1 193 1-196 100-299 (659)
141 PRK14273 phosphate ABC transpo 100.0 1.1E-45 2.3E-50 299.4 21.7 187 1-193 39-238 (254)
142 TIGR03771 anch_rpt_ABC anchore 100.0 6.6E-46 1.4E-50 295.4 20.0 186 1-192 12-200 (223)
143 PRK15112 antimicrobial peptide 100.0 1E-45 2.2E-50 301.7 21.6 188 1-193 45-239 (267)
144 PRK13648 cbiO cobalt transport 100.0 1.1E-45 2.3E-50 301.8 21.6 186 1-193 41-231 (269)
145 PRK14242 phosphate transporter 100.0 1.3E-45 2.9E-50 298.6 22.0 186 1-192 38-236 (253)
146 PRK13645 cbiO cobalt transport 100.0 8.2E-46 1.8E-50 305.4 21.0 185 1-192 43-239 (289)
147 PRK13640 cbiO cobalt transport 100.0 7.8E-46 1.7E-50 304.6 20.8 186 1-193 39-232 (282)
148 PRK13633 cobalt transporter AT 100.0 9.2E-46 2E-50 303.9 21.2 186 1-193 42-233 (280)
149 PRK10762 D-ribose transporter 100.0 4E-46 8.8E-51 327.9 20.3 188 1-191 36-228 (501)
150 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-45 4E-50 294.4 22.3 187 1-193 32-220 (232)
151 PRK09984 phosphonate/organopho 100.0 8E-46 1.7E-50 301.4 20.5 188 1-191 36-240 (262)
152 PRK14241 phosphate transporter 100.0 1.5E-45 3.3E-50 299.1 22.0 189 1-193 36-242 (258)
153 TIGR00955 3a01204 The Eye Pigm 100.0 6.1E-46 1.3E-50 333.6 21.7 195 1-196 57-259 (617)
154 PRK14269 phosphate ABC transpo 100.0 2.5E-45 5.4E-50 296.0 21.8 188 1-193 34-230 (246)
155 PRK09700 D-allose transporter 100.0 7.3E-46 1.6E-50 326.9 20.3 188 1-191 37-232 (510)
156 PRK14235 phosphate transporter 100.0 2.8E-45 6E-50 299.1 22.2 188 1-193 51-251 (267)
157 PRK10744 pstB phosphate transp 100.0 2.2E-45 4.9E-50 298.5 21.5 187 1-193 45-244 (260)
158 PRK10261 glutathione transport 100.0 1.7E-45 3.8E-50 331.0 22.7 188 1-193 356-553 (623)
159 cd03267 ABC_NatA_like Similar 100.0 2.4E-45 5.2E-50 294.5 21.2 180 1-186 53-236 (236)
160 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-45 3E-50 325.1 21.1 182 1-192 43-228 (510)
161 PRK03695 vitamin B12-transport 100.0 2.2E-45 4.9E-50 296.7 20.5 184 1-192 28-221 (248)
162 PRK13642 cbiO cobalt transport 100.0 2.7E-45 5.8E-50 300.7 21.2 186 1-193 39-229 (277)
163 TIGR00968 3a0106s01 sulfate AB 100.0 4.3E-45 9.3E-50 293.2 21.8 187 1-193 32-220 (237)
164 COG0444 DppD ABC-type dipeptid 100.0 2.1E-45 4.5E-50 299.2 19.9 191 1-194 37-244 (316)
165 PRK14256 phosphate ABC transpo 100.0 6.4E-45 1.4E-49 294.5 22.4 188 1-193 36-236 (252)
166 PRK10982 galactose/methyl gala 100.0 2.1E-45 4.6E-50 322.6 20.9 188 1-191 30-221 (491)
167 PRK11701 phnK phosphonate C-P 100.0 5.8E-45 1.2E-49 295.8 21.8 187 1-192 38-240 (258)
168 KOG0061|consensus 100.0 1.1E-45 2.5E-50 330.2 19.3 195 1-196 62-263 (613)
169 COG4525 TauB ABC-type taurine 100.0 1.6E-45 3.4E-50 280.4 17.2 181 1-188 37-219 (259)
170 COG1123 ATPase components of v 100.0 1.7E-45 3.6E-50 318.7 19.5 189 1-194 323-520 (539)
171 PRK14245 phosphate ABC transpo 100.0 5.9E-45 1.3E-49 294.4 21.4 187 1-193 35-234 (250)
172 TIGR03608 L_ocin_972_ABC putat 100.0 3.5E-45 7.5E-50 287.5 19.1 170 1-176 30-206 (206)
173 COG4181 Predicted ABC-type tra 100.0 9.9E-46 2.1E-50 276.3 15.1 177 1-184 42-226 (228)
174 PRK14259 phosphate ABC transpo 100.0 4.8E-45 1E-49 298.0 20.5 186 1-193 45-253 (269)
175 cd03252 ABCC_Hemolysin The ABC 100.0 1.5E-45 3.2E-50 295.6 16.8 188 1-194 34-226 (237)
176 PRK14274 phosphate ABC transpo 100.0 8.7E-45 1.9E-49 294.9 21.5 187 1-193 44-243 (259)
177 PRK13547 hmuV hemin importer A 100.0 4E-45 8.8E-50 298.8 19.6 189 1-192 33-243 (272)
178 PRK14270 phosphate ABC transpo 100.0 9.6E-45 2.1E-49 293.3 21.6 186 1-192 36-234 (251)
179 PRK14244 phosphate ABC transpo 100.0 1E-44 2.2E-49 293.2 21.5 188 1-193 37-237 (251)
180 PRK10418 nikD nickel transport 100.0 1.5E-44 3.2E-49 292.8 22.3 185 1-193 35-230 (254)
181 PRK14239 phosphate transporter 100.0 1.4E-44 2.9E-49 292.5 21.9 187 1-193 37-236 (252)
182 cd03251 ABCC_MsbA MsbA is an e 100.0 2E-45 4.3E-50 294.2 16.5 188 1-194 34-226 (234)
183 PRK14240 phosphate transporter 100.0 2E-44 4.3E-49 291.3 22.2 187 1-193 35-234 (250)
184 TIGR02633 xylG D-xylose ABC tr 100.0 6.2E-45 1.3E-49 320.3 21.0 188 1-190 33-227 (500)
185 PRK14248 phosphate ABC transpo 100.0 1.6E-44 3.5E-49 294.7 21.8 187 1-193 53-252 (268)
186 PRK14262 phosphate ABC transpo 100.0 1.9E-44 4.2E-49 291.3 21.9 187 1-193 35-234 (250)
187 PRK14272 phosphate ABC transpo 100.0 2.6E-44 5.7E-49 290.8 22.3 188 1-193 36-236 (252)
188 PRK14237 phosphate transporter 100.0 2.2E-44 4.7E-49 293.8 21.9 187 1-193 52-251 (267)
189 PRK13549 xylose transporter AT 100.0 6.5E-45 1.4E-49 320.6 20.2 189 1-191 294-492 (506)
190 PRK11288 araG L-arabinose tran 100.0 9.6E-45 2.1E-49 319.2 21.0 184 1-187 36-223 (501)
191 PRK14251 phosphate ABC transpo 100.0 2.7E-44 5.9E-49 290.6 21.6 186 1-192 36-234 (251)
192 PRK14253 phosphate ABC transpo 100.0 2.9E-44 6.2E-49 290.2 21.6 186 1-192 35-232 (249)
193 PRK14275 phosphate ABC transpo 100.0 2.8E-44 6E-49 295.9 21.6 187 1-193 71-270 (286)
194 TIGR03269 met_CoM_red_A2 methy 100.0 1.8E-44 3.8E-49 318.8 21.9 190 1-195 32-260 (520)
195 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-44 2.9E-49 319.5 21.1 188 1-195 316-519 (520)
196 TIGR02982 heterocyst_DevA ABC 100.0 2.1E-44 4.5E-49 286.1 20.0 176 1-182 37-219 (220)
197 PRK10419 nikE nickel transport 100.0 2.9E-44 6.4E-49 293.2 21.1 187 1-192 44-240 (268)
198 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.7E-45 1.2E-49 292.4 16.5 183 1-194 35-227 (238)
199 PRK14271 phosphate ABC transpo 100.0 3.9E-44 8.5E-49 293.6 21.8 187 1-193 53-251 (276)
200 PRK14249 phosphate ABC transpo 100.0 5E-44 1.1E-48 289.1 21.9 186 1-193 36-235 (251)
201 PRK10261 glutathione transport 100.0 1.5E-44 3.1E-49 325.0 20.7 187 1-192 48-257 (623)
202 PRK14236 phosphate transporter 100.0 5E-44 1.1E-48 292.5 22.1 187 1-193 57-256 (272)
203 TIGR02323 CP_lyasePhnK phospho 100.0 3.8E-44 8.2E-49 290.1 21.1 188 1-193 35-238 (253)
204 PRK14238 phosphate transporter 100.0 3.6E-44 7.8E-49 293.2 21.1 187 1-193 56-255 (271)
205 PRK14254 phosphate ABC transpo 100.0 4.6E-44 1E-48 294.4 21.7 184 1-192 71-268 (285)
206 PRK15134 microcin C ABC transp 100.0 2.7E-44 5.8E-49 318.2 21.8 188 1-193 318-515 (529)
207 PRK09700 D-allose transporter 100.0 1.3E-44 2.7E-49 319.0 19.5 185 1-188 295-493 (510)
208 PRK14260 phosphate ABC transpo 100.0 4.9E-44 1.1E-48 290.5 21.5 188 1-193 39-243 (259)
209 cd03254 ABCC_Glucan_exporter_l 100.0 7.6E-45 1.6E-49 290.0 16.4 183 1-194 35-227 (229)
210 PRK15056 manganese/iron transp 100.0 2.1E-44 4.5E-49 294.7 19.2 188 1-192 39-229 (272)
211 PRK10762 D-ribose transporter 100.0 1.9E-44 4.1E-49 317.3 20.3 188 1-191 284-482 (501)
212 PRK13543 cytochrome c biogenes 100.0 3.6E-44 7.8E-49 283.7 19.7 170 1-178 43-212 (214)
213 PRK14263 phosphate ABC transpo 100.0 8.2E-44 1.8E-48 289.6 22.1 186 1-193 40-245 (261)
214 PRK15134 microcin C ABC transp 100.0 3.8E-44 8.2E-49 317.2 21.9 188 1-192 41-245 (529)
215 COG2274 SunT ABC-type bacterio 100.0 4.8E-45 1E-49 328.6 16.3 188 1-194 505-697 (709)
216 COG4604 CeuD ABC-type enteroch 100.0 9.3E-46 2E-50 281.9 9.7 189 1-193 33-225 (252)
217 PRK14243 phosphate transporter 100.0 7.1E-44 1.5E-48 290.4 20.8 185 1-193 42-248 (264)
218 TIGR02633 xylG D-xylose ABC tr 100.0 2.4E-44 5.2E-49 316.6 19.3 187 1-189 292-488 (500)
219 PRK11288 araG L-arabinose tran 100.0 1.7E-44 3.7E-49 317.6 18.1 188 1-191 285-483 (501)
220 TIGR01257 rim_protein retinal- 100.0 3.7E-44 8.1E-49 347.6 22.1 190 1-196 1971-2162(2272)
221 PRK14255 phosphate ABC transpo 100.0 1.5E-43 3.3E-48 286.4 22.1 187 1-193 37-236 (252)
222 PRK14258 phosphate ABC transpo 100.0 1.5E-43 3.1E-48 288.1 22.0 188 1-193 39-245 (261)
223 PRK15439 autoinducer 2 ABC tra 100.0 3.4E-44 7.5E-49 316.2 19.8 189 1-192 295-491 (510)
224 PRK14261 phosphate ABC transpo 100.0 1.5E-43 3.2E-48 286.7 21.5 186 1-192 38-236 (253)
225 TIGR01166 cbiO cobalt transpor 100.0 5.8E-44 1.2E-48 277.6 18.4 159 1-163 24-188 (190)
226 PRK14257 phosphate ABC transpo 100.0 1.4E-43 3.1E-48 296.4 22.1 187 1-193 114-313 (329)
227 PRK13538 cytochrome c biogenes 100.0 6E-44 1.3E-48 280.5 18.5 168 1-176 33-202 (204)
228 cd03253 ABCC_ATM1_transporter 100.0 2.7E-44 5.9E-49 288.0 16.7 187 1-193 33-224 (236)
229 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-43 2.4E-48 278.7 19.4 159 1-186 39-202 (202)
230 PRK14266 phosphate ABC transpo 100.0 1.9E-43 4.2E-48 285.5 21.0 186 1-192 35-233 (250)
231 cd03245 ABCC_bacteriocin_expor 100.0 3.1E-44 6.6E-49 284.9 16.0 170 1-185 36-219 (220)
232 PRK10247 putative ABC transpor 100.0 8.9E-44 1.9E-48 283.5 18.7 178 1-188 39-222 (225)
233 PRK11174 cysteine/glutathione 100.0 4.2E-44 9.1E-49 320.4 18.5 181 1-193 382-572 (588)
234 CHL00131 ycf16 sulfate ABC tra 100.0 3.5E-43 7.5E-48 284.2 22.0 187 1-190 39-238 (252)
235 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-43 3.3E-48 339.6 23.4 195 1-196 795-1000(1394)
236 COG1123 ATPase components of v 100.0 1.4E-43 3E-48 306.8 20.7 191 1-195 41-246 (539)
237 TIGR01257 rim_protein retinal- 100.0 1.3E-43 2.8E-48 343.9 22.9 189 1-196 962-1152(2272)
238 PRK14265 phosphate ABC transpo 100.0 2.3E-43 5E-48 288.8 20.9 186 1-193 52-258 (274)
239 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-43 2.4E-48 278.5 17.9 165 1-176 32-198 (201)
240 PLN03140 ABC transporter G fam 100.0 1.6E-43 3.6E-48 339.3 22.9 196 1-196 912-1117(1470)
241 COG4161 ArtP ABC-type arginine 100.0 4.4E-44 9.5E-49 265.6 14.6 185 1-190 34-227 (242)
242 PRK13546 teichoic acids export 100.0 7.4E-43 1.6E-47 284.3 22.9 179 1-195 56-234 (264)
243 cd03213 ABCG_EPDR ABCG transpo 100.0 2.4E-43 5.2E-48 275.2 19.2 151 1-185 41-193 (194)
244 COG4559 ABC-type hemin transpo 100.0 6.8E-44 1.5E-48 274.4 15.6 189 1-193 33-230 (259)
245 PRK14246 phosphate ABC transpo 100.0 4.6E-43 1E-47 284.6 21.3 187 1-193 42-241 (257)
246 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.1E-43 8.8E-48 279.6 20.4 171 1-186 54-224 (224)
247 TIGR02324 CP_lyasePhnL phospho 100.0 2.8E-43 6.2E-48 280.2 18.7 171 1-176 40-222 (224)
248 COG1129 MglA ABC-type sugar tr 100.0 1.8E-43 4E-48 304.1 18.6 184 1-187 40-228 (500)
249 PRK14264 phosphate ABC transpo 100.0 8.7E-43 1.9E-47 289.4 21.6 189 1-193 77-289 (305)
250 PRK09580 sufC cysteine desulfu 100.0 1E-42 2.2E-47 280.8 21.4 189 1-191 33-233 (248)
251 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.4E-43 1.2E-47 282.5 19.6 173 1-191 31-205 (246)
252 PRK10938 putative molybdenum t 100.0 1.7E-43 3.8E-48 310.4 17.6 178 1-192 35-223 (490)
253 cd03232 ABC_PDR_domain2 The pl 100.0 5.3E-43 1.2E-47 272.8 18.4 153 1-186 39-192 (192)
254 COG4988 CydD ABC-type transpor 100.0 1.2E-43 2.6E-48 306.5 16.1 178 1-193 353-543 (559)
255 PRK09544 znuC high-affinity zi 100.0 6.5E-43 1.4E-47 282.8 18.9 170 1-192 36-208 (251)
256 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.7E-43 5.8E-48 320.2 18.0 175 1-193 485-673 (686)
257 TIGR01189 ccmA heme ABC export 100.0 8E-43 1.7E-47 272.9 18.3 164 1-175 32-197 (198)
258 PRK11176 lipid transporter ATP 100.0 2.6E-43 5.6E-48 315.0 17.5 179 1-193 375-567 (582)
259 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-43 2.8E-48 282.5 13.9 175 1-181 46-225 (226)
260 PRK10790 putative multidrug tr 100.0 4E-43 8.7E-48 314.3 18.6 177 1-193 373-563 (592)
261 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-43 5.3E-48 321.5 17.3 176 1-193 511-700 (710)
262 COG3845 ABC-type uncharacteriz 100.0 4.8E-43 1E-47 297.2 17.1 183 1-186 36-222 (501)
263 PRK13539 cytochrome c biogenes 100.0 1.1E-42 2.5E-47 273.9 18.2 166 1-177 34-199 (207)
264 PRK14252 phosphate ABC transpo 100.0 2.8E-42 6.1E-47 281.1 21.1 186 1-192 48-248 (265)
265 COG1132 MdlB ABC-type multidru 100.0 3.8E-43 8.2E-48 313.1 16.9 188 1-194 361-553 (567)
266 TIGR01842 type_I_sec_PrtD type 100.0 7.8E-43 1.7E-47 309.8 18.7 188 1-193 350-542 (544)
267 cd03289 ABCC_CFTR2 The CFTR su 100.0 8.4E-43 1.8E-47 285.3 17.2 176 1-193 36-225 (275)
268 cd03230 ABC_DR_subfamily_A Thi 100.0 9.6E-43 2.1E-47 267.1 16.5 139 1-181 32-172 (173)
269 cd03215 ABC_Carb_Monos_II This 100.0 1.1E-42 2.3E-47 269.0 16.8 143 1-181 32-181 (182)
270 COG4172 ABC-type uncharacteriz 100.0 1.2E-42 2.7E-47 288.6 17.9 189 1-194 319-517 (534)
271 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-42 2.3E-47 276.2 16.5 171 1-187 36-220 (221)
272 PRK13545 tagH teichoic acids e 100.0 5.4E-42 1.2E-46 297.8 22.3 179 1-195 56-234 (549)
273 TIGR03375 type_I_sec_LssB type 100.0 8.3E-43 1.8E-47 317.3 17.8 180 1-195 497-690 (694)
274 TIGR00956 3a01205 Pleiotropic 100.0 2.9E-42 6.4E-47 330.8 21.7 195 1-196 93-303 (1394)
275 PRK13540 cytochrome c biogenes 100.0 2.2E-42 4.8E-47 270.8 16.8 163 1-174 33-197 (200)
276 TIGR01193 bacteriocin_ABC ABC- 100.0 1.1E-42 2.4E-47 317.1 17.3 178 1-193 506-697 (708)
277 PRK13657 cyclic beta-1,2-gluca 100.0 2E-42 4.3E-47 309.7 18.6 182 1-193 367-558 (588)
278 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.6E-42 7.9E-47 270.8 17.5 165 1-188 40-207 (207)
279 PRK11160 cysteine/glutathione 100.0 2.2E-42 4.8E-47 308.5 18.3 178 1-193 372-562 (574)
280 cd03229 ABC_Class3 This class 100.0 2.4E-42 5.1E-47 266.1 15.2 139 1-178 32-176 (178)
281 cd03288 ABCC_SUR2 The SUR doma 100.0 3.1E-42 6.7E-47 279.7 16.6 186 1-193 53-243 (257)
282 TIGR00958 3a01208 Conjugate Tr 100.0 1.8E-42 3.9E-47 315.6 16.7 177 1-194 513-703 (711)
283 COG4619 ABC-type uncharacteriz 100.0 2.1E-43 4.6E-48 263.0 8.4 173 1-182 35-212 (223)
284 PLN03140 ABC transporter G fam 100.0 5.9E-42 1.3E-46 328.6 19.6 194 1-196 197-430 (1470)
285 PRK10982 galactose/methyl gala 100.0 8.5E-42 1.9E-46 299.8 19.0 186 1-189 280-476 (491)
286 TIGR02203 MsbA_lipidA lipid A 100.0 4.2E-42 9E-47 306.5 17.2 179 1-193 364-556 (571)
287 TIGR01846 type_I_sec_HlyB type 100.0 5.2E-42 1.1E-46 312.1 17.7 182 1-193 489-680 (694)
288 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.7E-41 3.7E-46 265.9 18.1 156 1-194 32-194 (200)
289 cd03246 ABCC_Protease_Secretio 100.0 5.6E-42 1.2E-46 262.9 14.9 136 1-181 34-172 (173)
290 PRK10789 putative multidrug tr 100.0 7.2E-42 1.6E-46 305.0 17.2 178 1-193 347-538 (569)
291 PRK13541 cytochrome c biogenes 100.0 1.5E-41 3.3E-46 265.1 16.9 161 1-173 32-192 (195)
292 TIGR01192 chvA glucan exporter 100.0 1.2E-41 2.6E-46 304.3 18.5 182 1-193 367-558 (585)
293 TIGR02204 MsbA_rel ABC transpo 100.0 8.7E-42 1.9E-46 304.8 17.1 179 1-194 372-564 (576)
294 cd03214 ABC_Iron-Siderophores_ 100.0 5.7E-42 1.2E-46 264.4 13.8 145 1-185 31-179 (180)
295 cd03247 ABCC_cytochrome_bd The 100.0 1.3E-41 2.7E-46 262.0 15.2 142 1-185 34-177 (178)
296 KOG0055|consensus 100.0 5.3E-42 1.2E-46 315.9 15.4 183 1-194 385-577 (1228)
297 KOG0058|consensus 100.0 8.2E-42 1.8E-46 300.5 14.8 188 1-194 500-692 (716)
298 cd03290 ABCC_SUR1_N The SUR do 100.0 4.7E-41 1E-45 266.5 17.6 164 1-178 33-216 (218)
299 KOG0057|consensus 100.0 1E-41 2.3E-46 291.6 14.6 177 1-193 384-574 (591)
300 PRK15177 Vi polysaccharide exp 100.0 9.5E-41 2.1E-45 264.1 18.8 174 1-194 19-193 (213)
301 PRK10535 macrolide transporter 100.0 1.4E-40 3E-45 300.3 22.1 185 1-192 40-231 (648)
302 PRK15064 ABC transporter ATP-b 100.0 9.3E-41 2E-45 295.7 19.6 172 1-194 351-526 (530)
303 PRK15064 ABC transporter ATP-b 100.0 9.5E-41 2.1E-45 295.6 19.4 178 1-192 33-241 (530)
304 cd03250 ABCC_MRP_domain1 Domai 100.0 7E-41 1.5E-45 263.0 15.2 158 1-178 37-202 (204)
305 PRK11819 putative ABC transpor 100.0 1.7E-40 3.7E-45 295.4 18.9 177 1-192 39-249 (556)
306 PTZ00265 multidrug resistance 100.0 5.5E-41 1.2E-45 322.7 16.4 185 1-193 1200-1452(1466)
307 PRK10938 putative molybdenum t 100.0 1.1E-40 2.4E-45 292.7 16.5 182 1-185 292-484 (490)
308 COG4987 CydC ABC-type transpor 100.0 4.6E-41 1E-45 287.4 13.3 178 1-193 370-561 (573)
309 PRK13409 putative ATPase RIL; 100.0 2.6E-40 5.7E-45 295.0 18.7 165 1-187 371-536 (590)
310 cd03291 ABCC_CFTR1 The CFTR su 100.0 1E-39 2.2E-44 268.0 20.4 167 1-193 69-247 (282)
311 COG4674 Uncharacterized ABC-ty 100.0 3.5E-41 7.6E-46 256.5 10.8 189 1-193 37-235 (249)
312 cd03223 ABCD_peroxisomal_ALDP 100.0 3.4E-40 7.3E-45 251.5 16.1 133 1-181 33-165 (166)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.2E-40 1.1E-44 292.1 19.7 177 1-192 37-247 (552)
314 COG4618 ArpD ABC-type protease 100.0 1.1E-40 2.4E-45 283.3 14.3 190 1-195 368-562 (580)
315 cd03228 ABCC_MRP_Like The MRP 100.0 2.2E-40 4.7E-45 253.6 14.6 133 1-178 34-169 (171)
316 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.3E-40 7.1E-45 267.4 16.4 167 1-178 32-214 (255)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.4E-40 1.8E-44 290.8 20.2 175 1-193 354-531 (552)
318 COG1101 PhnK ABC-type uncharac 100.0 2.8E-40 6.1E-45 254.9 14.6 182 1-185 38-230 (263)
319 COG4608 AppF ABC-type oligopep 100.0 3.4E-40 7.5E-45 263.5 15.3 153 1-193 45-199 (268)
320 COG4586 ABC-type uncharacteriz 100.0 1.8E-40 3.9E-45 263.8 13.4 190 1-196 56-249 (325)
321 PRK11819 putative ABC transpor 100.0 1.2E-39 2.6E-44 290.0 20.3 175 1-193 356-533 (556)
322 TIGR02857 CydD thiol reductant 100.0 3.5E-40 7.7E-45 291.9 14.6 162 1-176 354-529 (529)
323 KOG0065|consensus 100.0 1.3E-40 2.9E-45 307.1 11.9 196 1-196 823-1028(1391)
324 cd03216 ABC_Carb_Monos_I This 100.0 2E-39 4.4E-44 246.6 16.2 127 1-184 32-162 (163)
325 PLN03232 ABC transporter C fam 100.0 7.1E-40 1.5E-44 316.6 16.5 177 1-193 1268-1458(1495)
326 TIGR02868 CydC thiol reductant 100.0 6E-40 1.3E-44 290.4 13.3 150 1-162 367-529 (529)
327 PLN03130 ABC transporter C fam 100.0 2E-39 4.3E-44 314.4 17.7 177 1-193 1271-1461(1622)
328 KOG0055|consensus 100.0 1.4E-39 3E-44 300.0 15.2 182 1-193 1022-1213(1228)
329 COG1119 ModF ABC-type molybden 100.0 1.7E-39 3.8E-44 255.2 12.5 183 1-186 63-255 (257)
330 PRK10522 multidrug transporter 100.0 6.9E-39 1.5E-43 284.7 17.6 167 1-185 355-530 (547)
331 PRK11147 ABC transporter ATPas 100.0 1.5E-38 3.1E-43 286.8 19.4 174 1-192 351-527 (635)
332 TIGR00957 MRP_assoc_pro multi 100.0 6E-39 1.3E-43 310.5 17.2 177 1-193 1318-1508(1522)
333 PTZ00243 ABC transporter; Prov 100.0 9.6E-39 2.1E-43 309.0 18.5 177 1-193 1342-1533(1560)
334 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-38 2.4E-43 283.8 17.2 167 1-184 374-550 (555)
335 PTZ00265 multidrug resistance 100.0 8.1E-39 1.7E-43 307.8 16.8 174 1-178 417-654 (1466)
336 PRK10636 putative ABC transpor 100.0 2.6E-38 5.6E-43 285.1 18.9 169 1-192 344-516 (638)
337 COG4172 ABC-type uncharacteriz 100.0 1.9E-38 4.1E-43 263.7 16.3 189 1-193 42-247 (534)
338 COG4167 SapF ABC-type antimicr 100.0 4E-38 8.7E-43 238.0 16.1 188 1-193 45-239 (267)
339 KOG0059|consensus 100.0 1.1E-38 2.3E-43 295.7 15.9 190 1-196 597-790 (885)
340 PRK13409 putative ATPase RIL; 100.0 1.8E-38 3.8E-43 283.3 16.4 163 1-178 105-286 (590)
341 COG1134 TagH ABC-type polysacc 100.0 9.9E-38 2.1E-42 245.3 17.7 180 1-196 59-239 (249)
342 COG0396 sufC Cysteine desulfur 100.0 4.9E-37 1.1E-41 239.1 19.2 191 1-195 36-235 (251)
343 cd03222 ABC_RNaseL_inhibitor T 100.0 1.1E-37 2.4E-42 239.5 15.2 119 1-181 31-150 (177)
344 PLN03073 ABC transporter F fam 100.0 2.5E-37 5.4E-42 280.7 20.0 173 1-194 541-715 (718)
345 TIGR01271 CFTR_protein cystic 100.0 1.1E-37 2.4E-42 301.2 18.7 176 1-193 1251-1440(1490)
346 COG4133 CcmA ABC-type transpor 100.0 6.7E-38 1.5E-42 237.1 13.0 156 1-163 34-191 (209)
347 PRK10636 putative ABC transpor 100.0 2.7E-37 5.8E-42 278.5 19.1 177 1-192 33-235 (638)
348 TIGR00954 3a01203 Peroxysomal 100.0 2.9E-37 6.2E-42 279.2 16.1 163 1-180 484-655 (659)
349 cd03238 ABC_UvrA The excision 100.0 1.8E-36 4E-41 232.6 17.0 134 1-178 27-163 (176)
350 PRK11147 ABC transporter ATPas 100.0 1.7E-36 3.7E-41 273.3 19.3 176 1-192 35-242 (635)
351 COG4136 ABC-type uncharacteriz 100.0 9.8E-37 2.1E-41 223.8 11.0 170 1-176 34-207 (213)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.6E-36 7.9E-41 224.3 14.3 112 1-180 32-143 (144)
353 COG0488 Uup ATPase components 100.0 4.9E-36 1.1E-40 262.8 17.5 178 1-192 35-239 (530)
354 TIGR01271 CFTR_protein cystic 100.0 1.8E-35 3.9E-40 285.9 20.8 175 1-193 458-636 (1490)
355 PLN03232 ABC transporter C fam 100.0 7.2E-36 1.6E-40 288.8 17.8 168 1-193 649-828 (1495)
356 PLN03130 ABC transporter C fam 100.0 1E-35 2.2E-40 288.7 18.3 167 1-193 649-828 (1622)
357 PTZ00243 ABC transporter; Prov 100.0 2.1E-35 4.6E-40 285.9 19.7 177 1-193 692-870 (1560)
358 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-35 3.6E-40 286.7 18.2 172 1-193 670-850 (1522)
359 COG4107 PhnK ABC-type phosphon 100.0 1.2E-35 2.6E-40 223.1 12.5 184 1-193 38-241 (258)
360 cd00267 ABC_ATPase ABC (ATP-bi 100.0 7.7E-35 1.7E-39 219.8 14.6 122 1-178 31-155 (157)
361 KOG0056|consensus 100.0 1.4E-35 3.1E-40 251.5 8.5 183 1-194 570-762 (790)
362 COG5265 ATM1 ABC-type transpor 100.0 9.5E-35 2.1E-39 242.6 10.3 188 1-194 295-487 (497)
363 cd03278 ABC_SMC_barmotin Barmo 100.0 2.8E-34 6.1E-39 224.5 12.3 151 1-179 28-191 (197)
364 COG4138 BtuD ABC-type cobalami 100.0 1E-35 2.2E-40 223.4 3.6 181 1-193 31-221 (248)
365 PLN03073 ABC transporter F fam 100.0 2.4E-34 5.2E-39 261.2 12.5 181 1-191 209-429 (718)
366 cd03271 ABC_UvrA_II The excisi 100.0 2.9E-33 6.2E-38 226.8 17.3 135 43-188 118-261 (261)
367 COG4778 PhnL ABC-type phosphon 100.0 7.5E-34 1.6E-38 212.4 10.2 172 2-178 44-227 (235)
368 cd03270 ABC_UvrA_I The excisio 100.0 4E-32 8.6E-37 216.6 19.4 100 84-186 118-226 (226)
369 cd03273 ABC_SMC2_euk Eukaryoti 100.0 9.6E-34 2.1E-38 229.2 9.1 172 1-177 31-242 (251)
370 PF00005 ABC_tran: ABC transpo 100.0 2E-33 4.4E-38 207.0 9.5 114 1-131 17-137 (137)
371 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.2E-32 2.6E-37 221.5 14.1 172 1-178 29-235 (243)
372 COG0488 Uup ATPase components 100.0 9.7E-32 2.1E-36 235.8 17.8 171 1-194 354-526 (530)
373 cd03240 ABC_Rad50 The catalyti 100.0 1.6E-32 3.4E-37 215.8 11.1 155 1-180 28-199 (204)
374 KOG0054|consensus 100.0 6.3E-32 1.4E-36 253.9 17.0 168 1-193 553-731 (1381)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 1.2E-31 2.7E-36 212.0 14.3 165 1-180 34-210 (213)
376 KOG0054|consensus 100.0 7.1E-32 1.5E-36 253.6 14.9 178 1-194 1172-1363(1381)
377 COG1129 MglA ABC-type sugar tr 100.0 4E-31 8.7E-36 227.9 17.5 181 2-185 292-482 (500)
378 cd03274 ABC_SMC4_euk Eukaryoti 100.0 5.9E-33 1.3E-37 219.4 0.8 163 1-178 31-204 (212)
379 KOG0065|consensus 100.0 1.6E-29 3.4E-34 234.2 12.2 195 1-196 147-354 (1391)
380 PRK00635 excinuclease ABC subu 100.0 5.2E-28 1.1E-32 232.5 20.5 139 52-193 759-906 (1809)
381 KOG0927|consensus 100.0 7.8E-29 1.7E-33 212.3 9.6 172 1-193 422-596 (614)
382 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1.4E-28 3.1E-33 198.6 10.6 171 1-180 28-235 (247)
383 cd03276 ABC_SMC6_euk Eukaryoti 100.0 5.6E-28 1.2E-32 189.1 13.2 153 1-178 27-190 (198)
384 PRK00349 uvrA excinuclease ABC 100.0 1.4E-26 3E-31 214.3 21.4 127 56-193 792-927 (943)
385 COG1245 Predicted ATPase, RNas 99.9 2.2E-27 4.7E-32 200.3 13.2 157 1-177 373-530 (591)
386 COG4615 PvdE ABC-type sideroph 99.9 6.2E-28 1.3E-32 200.7 4.7 165 1-184 355-528 (546)
387 COG4178 ABC-type uncharacteriz 99.9 3E-26 6.6E-31 201.3 12.8 158 1-178 425-588 (604)
388 TIGR00630 uvra excinuclease AB 99.9 2.4E-25 5.3E-30 205.8 18.9 126 55-191 789-923 (924)
389 COG3845 ABC-type uncharacteriz 99.9 1.4E-25 3E-30 191.0 15.0 186 2-190 291-489 (501)
390 KOG0062|consensus 99.9 1.6E-25 3.5E-30 191.1 14.0 169 1-190 396-566 (582)
391 KOG0066|consensus 99.9 2.3E-25 4.9E-30 187.8 12.2 167 1-190 619-788 (807)
392 KOG0927|consensus 99.9 1.3E-25 2.9E-30 192.6 8.5 111 79-192 197-308 (614)
393 KOG0062|consensus 99.9 2E-25 4.3E-30 190.5 8.5 171 1-193 112-285 (582)
394 COG4170 SapD ABC-type antimicr 99.9 2.5E-25 5.3E-30 172.1 6.7 187 1-193 39-248 (330)
395 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.4E-24 5.3E-29 170.3 10.3 83 95-178 119-209 (213)
396 COG1245 Predicted ATPase, RNas 99.9 2.2E-24 4.7E-29 182.2 8.8 160 1-177 106-287 (591)
397 cd03239 ABC_SMC_head The struc 99.9 3.7E-23 8E-28 159.3 13.4 74 103-178 95-172 (178)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 4.7E-24 1E-28 167.1 7.7 87 95-185 84-171 (200)
399 PRK00349 uvrA excinuclease ABC 99.9 9E-23 2E-27 189.1 15.4 137 53-193 434-585 (943)
400 KOG0060|consensus 99.9 1.3E-22 2.8E-27 175.5 13.5 169 1-183 467-646 (659)
401 TIGR00630 uvra excinuclease AB 99.9 2.7E-22 5.8E-27 185.7 15.9 136 53-192 432-582 (924)
402 cd03227 ABC_Class2 ABC-type Cl 99.9 2E-22 4.3E-27 153.0 10.3 74 103-178 78-155 (162)
403 KOG2355|consensus 99.9 3.6E-22 7.9E-27 153.9 11.6 174 1-190 46-234 (291)
404 cd03241 ABC_RecN RecN ATPase i 99.9 8.7E-22 1.9E-26 161.5 12.1 76 101-179 169-248 (276)
405 cd03283 ABC_MutS-like MutS-lik 99.9 5.5E-22 1.2E-26 155.3 7.5 123 1-169 31-154 (199)
406 PRK00635 excinuclease ABC subu 99.9 1.4E-20 3.1E-25 181.7 16.6 136 54-192 425-571 (1809)
407 KOG0064|consensus 99.8 1.9E-21 4.2E-26 166.8 5.2 158 1-177 514-682 (728)
408 cd03243 ABC_MutS_homologs The 99.8 2.8E-21 6E-26 151.6 3.0 86 100-189 89-175 (202)
409 cd03242 ABC_RecF RecF is a rec 99.8 6.5E-19 1.4E-23 144.0 15.3 77 100-182 181-269 (270)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2E-20 4.4E-25 148.8 5.5 93 86-186 76-174 (222)
411 COG2401 ABC-type ATPase fused 99.8 4.4E-19 9.6E-24 149.0 9.8 160 1-180 415-586 (593)
412 KOG0063|consensus 99.8 3.7E-19 8E-24 149.8 9.3 158 1-178 373-532 (592)
413 TIGR02858 spore_III_AA stage I 99.8 4.5E-19 9.7E-24 144.5 8.8 136 1-192 117-268 (270)
414 KOG0066|consensus 99.8 5.6E-20 1.2E-24 155.4 2.1 183 1-191 296-497 (807)
415 smart00534 MUTSac ATPase domai 99.8 1.9E-19 4.1E-24 139.4 3.3 80 90-172 49-130 (185)
416 COG0178 UvrA Excinuclease ATPa 99.8 1.5E-17 3.3E-22 148.9 14.7 128 55-193 783-919 (935)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.7 2.8E-18 6E-23 134.8 6.2 123 1-170 35-158 (204)
418 cd03284 ABC_MutS1 MutS1 homolo 99.7 2E-17 4.3E-22 131.1 6.7 138 1-191 36-179 (216)
419 TIGR00618 sbcc exonuclease Sbc 99.7 5.7E-16 1.2E-20 147.0 11.2 85 93-178 941-1035(1042)
420 PF02463 SMC_N: RecF/RecN/SMC 99.6 7.1E-17 1.5E-21 127.9 3.0 89 81-178 121-213 (220)
421 PHA02562 46 endonuclease subun 99.6 9.1E-16 2E-20 137.0 9.2 79 98-180 464-553 (562)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.6 2E-15 4.2E-20 119.5 9.6 57 107-163 95-155 (213)
423 PTZ00132 GTP-binding nuclear p 99.6 9.1E-16 2E-20 121.1 7.4 45 106-150 156-205 (215)
424 TIGR01069 mutS2 MutS2 family p 99.6 3.6E-16 7.7E-21 143.5 5.8 65 98-163 381-446 (771)
425 COG0178 UvrA Excinuclease ATPa 99.6 1.3E-14 2.8E-19 130.3 14.8 139 53-194 426-578 (935)
426 KOG0063|consensus 99.6 2.1E-15 4.6E-20 127.3 8.4 96 81-177 192-287 (592)
427 TIGR00634 recN DNA repair prot 99.6 3E-15 6.5E-20 133.8 9.6 75 101-178 439-517 (563)
428 PRK10869 recombination and rep 99.6 1.3E-14 2.9E-19 129.2 10.5 74 102-178 430-507 (553)
429 PRK03918 chromosome segregatio 99.5 1.8E-14 3.9E-19 134.8 9.9 80 97-178 783-868 (880)
430 PRK00409 recombination and DNA 99.5 3.3E-15 7.1E-20 137.5 4.5 80 95-176 383-463 (782)
431 PRK10246 exonuclease subunit S 99.5 4.1E-14 8.9E-19 134.2 10.6 82 96-178 943-1032(1047)
432 PRK01156 chromosome segregatio 99.5 1.1E-13 2.4E-18 129.8 13.0 82 98-181 797-888 (895)
433 cd01124 KaiC KaiC is a circadi 99.5 2.9E-13 6.2E-18 104.2 11.8 89 90-178 59-164 (187)
434 TIGR00606 rad50 rad50. This fa 99.5 7.6E-14 1.6E-18 135.1 10.0 72 98-170 1195-1277(1311)
435 PF13304 AAA_21: AAA domain; P 99.5 7.1E-14 1.5E-18 110.6 6.6 64 99-162 233-299 (303)
436 COG3910 Predicted ATPase [Gene 99.5 2.7E-12 5.8E-17 98.1 13.9 81 98-180 125-205 (233)
437 TIGR02168 SMC_prok_B chromosom 99.4 1.5E-13 3.3E-18 131.3 7.8 79 96-177 1083-1165(1179)
438 PRK13695 putative NTPase; Prov 99.4 4.1E-14 9E-19 108.3 2.5 81 97-184 73-155 (174)
439 cd01120 RecA-like_NTPases RecA 99.4 2.2E-12 4.9E-17 96.2 8.9 62 102-163 67-138 (165)
440 TIGR02169 SMC_prok_A chromosom 99.4 1.3E-12 2.7E-17 125.2 8.8 78 98-178 1070-1151(1164)
441 PRK08533 flagellar accessory p 99.4 9.1E-12 2E-16 99.6 12.1 75 102-177 95-184 (230)
442 cd01128 rho_factor Transcripti 99.4 2.5E-12 5.5E-17 103.8 8.6 76 100-182 127-211 (249)
443 PRK13830 conjugal transfer pro 99.3 1.2E-11 2.7E-16 114.8 13.0 67 118-186 650-726 (818)
444 PRK02224 chromosome segregatio 99.3 4.9E-12 1.1E-16 118.6 9.3 78 99-178 778-868 (880)
445 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.2E-11 2.6E-16 98.3 9.7 46 118-163 108-155 (222)
446 PRK07721 fliI flagellum-specif 99.3 1.2E-10 2.6E-15 101.0 16.1 158 1-190 164-340 (438)
447 TIGR02788 VirB11 P-type DNA tr 99.3 3.3E-11 7.2E-16 100.4 10.4 128 1-192 150-280 (308)
448 PRK00064 recF recombination pr 99.3 1.9E-11 4.1E-16 104.0 8.5 77 101-182 272-359 (361)
449 cd01131 PilT Pilus retraction 99.2 7.7E-11 1.7E-15 92.2 8.6 57 112-177 66-122 (198)
450 cd03286 ABC_MSH6_euk MutS6 hom 99.2 1.4E-11 3.1E-16 97.7 4.4 52 118-170 107-160 (218)
451 cd00820 PEPCK_HprK Phosphoenol 99.2 1.7E-11 3.6E-16 86.3 3.1 55 1-65 21-78 (107)
452 COG0419 SbcC ATPase involved i 99.1 1.9E-10 4E-15 108.3 10.0 80 97-178 810-897 (908)
453 TIGR00611 recf recF protein. A 99.1 1.8E-10 3.8E-15 98.1 7.7 60 101-163 274-342 (365)
454 PRK06067 flagellar accessory p 99.0 6.3E-09 1.4E-13 83.2 13.6 78 101-178 99-187 (234)
455 PRK06793 fliI flagellum-specif 99.0 1.1E-09 2.3E-14 94.6 8.9 133 1-184 162-302 (432)
456 TIGR02680 conserved hypothetic 99.0 7.1E-10 1.5E-14 107.8 7.4 65 95-162 1240-1316(1353)
457 smart00382 AAA ATPases associa 99.0 2.5E-08 5.5E-13 71.6 13.4 60 101-160 59-124 (148)
458 cd01125 repA Hexameric Replica 99.0 2.1E-09 4.5E-14 86.4 8.2 46 116-162 107-159 (239)
459 PRK14079 recF recombination pr 99.0 2E-09 4.4E-14 91.1 8.3 74 101-183 262-344 (349)
460 PRK06995 flhF flagellar biosyn 98.9 3E-09 6.5E-14 93.1 8.4 134 1-161 262-401 (484)
461 PRK13891 conjugal transfer pro 98.9 2.1E-08 4.6E-13 93.8 14.2 54 113-167 680-734 (852)
462 cd02023 UMPK Uridine monophosp 98.9 1.3E-09 2.7E-14 85.1 3.9 110 1-136 5-114 (198)
463 cd01130 VirB11-like_ATPase Typ 98.9 6.4E-09 1.4E-13 80.5 7.6 69 1-70 31-101 (186)
464 TIGR02655 circ_KaiC circadian 98.8 7.2E-11 1.6E-15 104.0 -5.5 82 86-177 99-190 (484)
465 PF13558 SbcCD_C: Putative exo 98.8 1.4E-08 3.1E-13 69.5 6.2 52 96-147 26-90 (90)
466 TIGR01420 pilT_fam pilus retra 98.7 1.1E-07 2.4E-12 80.4 10.9 54 112-174 187-240 (343)
467 PRK05399 DNA mismatch repair p 98.7 3.1E-08 6.8E-13 92.6 6.6 67 102-172 666-738 (854)
468 TIGR02903 spore_lon_C ATP-depe 98.6 1.1E-07 2.3E-12 86.2 7.4 103 1-147 181-291 (615)
469 cd01876 YihA_EngB The YihA (En 98.6 1.2E-07 2.5E-12 70.5 5.7 64 81-148 100-169 (170)
470 TIGR03881 KaiC_arch_4 KaiC dom 98.6 1.8E-08 3.8E-13 80.3 1.0 58 120-177 121-188 (229)
471 PRK13898 type IV secretion sys 98.6 1.9E-06 4.2E-11 80.4 14.5 48 116-163 638-686 (800)
472 PLN03210 Resistant to P. syrin 98.5 3E-07 6.5E-12 88.8 9.0 32 1-32 213-244 (1153)
473 PRK09825 idnK D-gluconate kina 98.5 6.3E-08 1.4E-12 74.4 2.3 61 1-66 9-71 (176)
474 PRK00454 engB GTP-binding prot 98.5 2.8E-06 6E-11 65.5 11.5 66 82-151 126-195 (196)
475 PF00488 MutS_V: MutS domain V 98.5 7.6E-06 1.7E-10 65.7 14.1 44 119-162 121-166 (235)
476 PRK11545 gntK gluconate kinase 98.4 6.9E-08 1.5E-12 73.2 1.4 61 1-66 1-63 (163)
477 cd01881 Obg_like The Obg-like 98.4 3.6E-08 7.7E-13 74.4 -0.3 65 104-173 105-172 (176)
478 TIGR01026 fliI_yscN ATPase Fli 98.4 2.3E-06 5E-11 74.5 10.4 60 127-190 277-345 (440)
479 cd00009 AAA The AAA+ (ATPases 98.4 8.1E-07 1.8E-11 64.2 6.2 54 108-162 72-130 (151)
480 TIGR00152 dephospho-CoA kinase 98.4 6.4E-07 1.4E-11 69.3 5.1 71 106-178 61-132 (188)
481 PRK07196 fliI flagellum-specif 98.3 4.4E-07 9.6E-12 78.6 3.7 67 1-68 161-239 (434)
482 TIGR03238 dnd_assoc_3 dnd syst 98.3 3.9E-07 8.4E-12 79.3 3.3 33 1-36 38-71 (504)
483 PRK01889 GTPase RsgA; Reviewed 98.3 7.5E-07 1.6E-11 75.7 4.4 62 1-64 201-262 (356)
484 PRK09270 nucleoside triphospha 98.3 6.6E-07 1.4E-11 71.4 3.4 65 1-68 39-107 (229)
485 TIGR02524 dot_icm_DotB Dot/Icm 98.3 1.7E-06 3.6E-11 73.6 5.8 111 1-111 140-268 (358)
486 PRK10078 ribose 1,5-bisphospho 98.2 9.8E-07 2.1E-11 68.2 3.5 45 1-49 8-55 (186)
487 TIGR00554 panK_bact pantothena 98.2 6.9E-07 1.5E-11 73.8 2.7 68 1-69 68-138 (290)
488 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.8E-06 3.9E-11 71.3 4.8 65 1-66 167-241 (287)
489 PRK10416 signal recognition pa 98.2 9.4E-07 2E-11 74.0 3.0 64 1-65 120-192 (318)
490 PRK06315 type III secretion sy 98.2 3.3E-06 7E-11 73.4 5.7 103 1-104 170-293 (442)
491 PLN02318 phosphoribulokinase/u 98.2 1.7E-06 3.6E-11 77.3 3.8 59 1-65 71-129 (656)
492 TIGR01070 mutS1 DNA mismatch r 98.1 2E-06 4.3E-11 80.5 4.0 52 118-171 669-722 (840)
493 TIGR00235 udk uridine kinase. 98.1 7.3E-07 1.6E-11 70.1 0.9 20 1-20 12-31 (207)
494 PRK14088 dnaA chromosomal repl 98.1 1.4E-05 3E-10 69.9 8.8 70 119-189 193-264 (440)
495 TIGR00416 sms DNA repair prote 98.1 1E-05 2.2E-10 70.9 7.7 60 119-178 169-245 (454)
496 COG1196 Smc Chromosome segrega 98.1 6E-06 1.3E-10 80.0 6.5 73 100-175 1064-1140(1163)
497 cd01121 Sms Sms (bacterial rad 98.1 1.8E-05 3.8E-10 67.7 8.5 60 119-178 157-233 (372)
498 PRK00098 GTPase RsgA; Reviewed 98.1 7.2E-06 1.6E-10 68.1 5.6 64 1-65 170-243 (298)
499 PRK13764 ATPase; Provisional 98.1 3.4E-05 7.5E-10 69.5 10.2 62 117-187 321-399 (602)
500 PRK06002 fliI flagellum-specif 98.0 6.3E-06 1.4E-10 71.7 5.0 50 1-51 171-230 (450)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-60 Score=365.26 Aligned_cols=189 Identities=29% Similarity=0.433 Sum_probs=171.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
|||||||||||||||+++.. +++|+|+++|.++.. ...|+.+|+|||+.++||.+||.||+.++...- ...+.
T Consensus 34 iGpSGSGKSTlLRclN~LE~-~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k 110 (240)
T COG1126 34 IGPSGSGKSTLLRCLNGLEE-PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSK 110 (240)
T ss_pred ECCCCCCHHHHHHHHHCCcC-CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCH
Confidence 69999999999999999988 799999999987742 246788999999999999999999999875422 23345
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
++.++.+.++|+++||.+.++.+|.+|||||||||+|||||+.+|+++|+|||||+|||+...++++.+++++++|.|.|
T Consensus 111 ~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMi 190 (240)
T COG1126 111 AEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMI 190 (240)
T ss_pred HHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEE
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
++||++ .++.+.+|||++|++ |+++.+|+|++++..
T Consensus 191 vVTHEM-~FAr~VadrviFmd~-G~iie~g~p~~~f~~ 226 (240)
T COG1126 191 IVTHEM-GFAREVADRVIFMDQ-GKIIEEGPPEEFFDN 226 (240)
T ss_pred EEechh-HHHHHhhheEEEeeC-CEEEEecCHHHHhcC
Confidence 999997 599999999999987 988889999988653
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-57 Score=362.29 Aligned_cols=188 Identities=29% Similarity=0.470 Sum_probs=173.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
||.||||||||+|||+++.. |++|+|.++|.++.. ...|+.||++||+++++...||++|++|+..... .
T Consensus 38 IG~SGAGKSTLiR~iN~Le~-PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~ 113 (339)
T COG1135 38 IGYSGAGKSTLLRLINLLER-PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---V 113 (339)
T ss_pred EcCCCCcHHHHHHHHhccCC-CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---C
Confidence 69999999999999999988 799999999988853 2356789999999999999999999999988764 3
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
++++.++++.++++.+||.++.+++|.+|||||||||+|||||+.+|++||+|||||+|||.+.+.|+++|+++.++ |.
T Consensus 114 ~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lgl 193 (339)
T COG1135 114 PKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGL 193 (339)
T ss_pred CHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||+++||.+ +.+..+|||+.+|++ |++++.|+..+++.+
T Consensus 194 TIvlITHEm-~Vvk~ic~rVavm~~-G~lvE~G~v~~vF~~ 232 (339)
T COG1135 194 TIVLITHEM-EVVKRICDRVAVLDQ-GRLVEEGTVSEVFAN 232 (339)
T ss_pred EEEEEechH-HHHHHHhhhheEeeC-CEEEEeccHHHhhcC
Confidence 999999997 589999999999987 999999999988753
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-56 Score=348.32 Aligned_cols=188 Identities=29% Similarity=0.442 Sum_probs=172.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|||||||||+||+|++++. |++|+|++||+++.. ..+|+.||||-|...+||++||.||+++...+. .++.+
T Consensus 33 iGpSGsGKTTtLkMINrLie-pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~ 108 (309)
T COG1125 33 IGPSGSGKTTTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKE 108 (309)
T ss_pred ECCCCCcHHHHHHHHhcccC-CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHH
Confidence 69999999999999999999 799999999999865 357888999999999999999999999876653 34566
Q ss_pred HHHHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 78 ELNKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
..+++++++++.+||+ ++.+++|.+|||||+|||.+||||+.+|+++|+||||++|||.++.++.+.+.++.++ ++|
T Consensus 109 ~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kT 188 (309)
T COG1125 109 RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT 188 (309)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCE
Confidence 7888999999999997 4899999999999999999999999999999999999999999999999999999876 999
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||++|||.+ ++.+++||+++|++ |+++..++|++++..
T Consensus 189 ivfVTHDid-EA~kLadri~vm~~-G~i~Q~~~P~~il~~ 226 (309)
T COG1125 189 IVFVTHDID-EALKLADRIAVMDA-GEIVQYDTPDEILAN 226 (309)
T ss_pred EEEEecCHH-HHHhhhceEEEecC-CeEEEeCCHHHHHhC
Confidence 999999975 79999999999987 999999999988653
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.4e-55 Score=360.16 Aligned_cols=188 Identities=28% Similarity=0.396 Sum_probs=174.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+.. |++|+|+|+|++++. .+..|.+++|||+..+||.|||+||++|+..... ....+.
T Consensus 35 lGPSGcGKSTlLr~IAGLe~-~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei 110 (338)
T COG3839 35 LGPSGCGKSTLLRMIAGLEE-PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEI 110 (338)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHH
Confidence 69999999999999999998 799999999999986 4556789999999999999999999999987653 234577
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
++++.++.+.++|++.++++|.+|||||||||+|||||+.+|+++|||||+|+||...+..+...|+++.++ +.|+|++
T Consensus 111 ~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYV 190 (338)
T COG3839 111 DKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV 190 (338)
T ss_pred HHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876 8899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|||.. ++..++||+++|++ |++...|+|.++...
T Consensus 191 THDq~-EAmtladri~Vm~~-G~i~Q~g~p~ely~~ 224 (338)
T COG3839 191 THDQV-EAMTLADRIVVMND-GRIQQVGTPLELYER 224 (338)
T ss_pred cCCHH-HHHhhCCEEEEEeC-CeeeecCChHHHhhC
Confidence 99975 79999999999996 999999999998754
No 5
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-54 Score=347.96 Aligned_cols=190 Identities=30% Similarity=0.423 Sum_probs=172.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe---eCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC---PISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~---~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||||+|+|+.. |++|.|.+||+ |.+.. ...++||||||+..+|+.|||.+|++|+..... ...+.
T Consensus 34 lGpSGaGKsTlLRiIAGLe~-p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~~p~~ 111 (345)
T COG1118 34 LGPSGAGKSTLLRIIAGLET-PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-ERPSE 111 (345)
T ss_pred ECCCCCcHHHHHHHHhCcCC-CCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-cCCCh
Confidence 59999999999999999999 79999999999 55442 335779999999999999999999999986652 23445
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
...+.++.++|+.+.|+...+++|.+|||||||||++||||+.+|++||||||+++||...+.++.+.|+++.++ |.|+
T Consensus 112 ~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~tt 191 (345)
T COG1118 112 AEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191 (345)
T ss_pred hhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceE
Confidence 677889999999999999999999999999999999999999999999999999999999999999999999876 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+++|||. +++.++||||++|++ |+|...|+++|+..+
T Consensus 192 vfVTHD~-eea~~ladrvvvl~~-G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 192 VFVTHDQ-EEALELADRVVVLNQ-GRIEQVGPPDEVYDH 228 (345)
T ss_pred EEEeCCH-HHHHhhcceEEEecC-CeeeeeCCHHHHhcC
Confidence 9999997 589999999999998 999999999998653
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4e-54 Score=336.55 Aligned_cols=188 Identities=31% Similarity=0.451 Sum_probs=171.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||||+|.|+++ |++|+|+++|.++.. ...++++|++||...+|..|||+||+.|..+-+. ..
T Consensus 40 iGgSGsGKStlLr~I~Gll~-P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~l 116 (263)
T COG1127 40 LGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KL 116 (263)
T ss_pred ECCCCcCHHHHHHHHhccCC-CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cC
Confidence 69999999999999999999 799999999999853 1356789999999999999999999999876553 23
Q ss_pred cHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 75 TWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
+.+..++.+..-|+.+||... .+++|++|||||++|++||||++.+|+++++||||+||||.+...+.++|+++++. +
T Consensus 117 p~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg 196 (263)
T COG1127 117 PESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG 196 (263)
T ss_pred CHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC
Confidence 455677788889999999977 89999999999999999999999999999999999999999999999999999977 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|++++|||.. .+..+|||++++.+ |+|+..|+++++.+
T Consensus 197 ~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~ 235 (263)
T COG1127 197 LTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLA 235 (263)
T ss_pred CEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHh
Confidence 99999999985 79999999999998 99999999998864
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-54 Score=359.73 Aligned_cols=188 Identities=29% Similarity=0.423 Sum_probs=172.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+.. |++|+|.++|++++.. ..+|.+|+|||+-.+||.|||.||++|+..... ....++.
T Consensus 37 LGPSGcGKTTlLR~IAGfe~-p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i 113 (352)
T COG3842 37 LGPSGCGKTTLLRMIAGFEQ-PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEI 113 (352)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHH
Confidence 69999999999999999999 7999999999999764 346779999999999999999999999987332 2234557
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
++++.++++.++|.++.+++|.+|||||||||+|||||+.+|++||||||.|+||..-+.++...++++.++ |.|.|++
T Consensus 114 ~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~V 193 (352)
T COG3842 114 KARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV 193 (352)
T ss_pred HHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999765 9999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||. +++..++|||++|++ |++...|+|+++..
T Consensus 194 THDq-eEAl~msDrI~Vm~~-G~I~Q~gtP~eiY~ 226 (352)
T COG3842 194 THDQ-EEALAMSDRIAVMND-GRIEQVGTPEEIYE 226 (352)
T ss_pred ECCH-HHHhhhccceEEccC-CceeecCCHHHHhh
Confidence 9997 589999999999987 99999999998864
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6e-54 Score=343.59 Aligned_cols=190 Identities=30% Similarity=0.403 Sum_probs=168.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc-cccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR-RTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~ 76 (197)
+||||||||||||+|+|+++ |.+|+|+++|+++.. +.+.+.++||||.+...+.+||+|.+.++..-+... ....
T Consensus 34 iGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~ 112 (258)
T COG1120 34 LGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS 112 (258)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCC
Confidence 69999999999999999999 799999999999864 346788999999998888999999999875432211 1123
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~i 155 (197)
+++++.+.+.|+.+++.+.+++.+.+|||||||||.|||||+++|++|||||||++||...+.+++++++++++ +|.|+
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tv 192 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999995 48999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|+++||++ .+.++||++++|++ |++++.|+|++++.
T Consensus 193 v~vlHDlN-~A~ryad~~i~lk~-G~i~a~G~p~evlT 228 (258)
T COG1120 193 VMVLHDLN-LAARYADHLILLKD-GKIVAQGTPEEVLT 228 (258)
T ss_pred EEEecCHH-HHHHhCCEEEEEEC-CeEEeecCcchhcC
Confidence 99999986 89999999999987 99999999987754
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.7e-53 Score=349.16 Aligned_cols=189 Identities=35% Similarity=0.549 Sum_probs=170.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|.+... ...++.+||+||++.+++.+||+||+.|++.++.... ..
T Consensus 37 lG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~ 112 (293)
T COG1131 37 LGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EE 112 (293)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hH
Confidence 69999999999999999999 799999999999865 3456789999999999999999999999988765321 23
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~iii 157 (197)
.+++++++++.++|.+..++++++||+|||||++||+||+++|++|||||||+||||.++.++.++|+++++++ .||++
T Consensus 113 ~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvli 192 (293)
T COG1131 113 AEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192 (293)
T ss_pred HHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 45789999999999987788999999999999999999999999999999999999999999999999999887 79999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
+||.+. ++..+||++++|++ |++++.|+++++...+
T Consensus 193 ssH~l~-e~~~~~d~v~il~~-G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 193 STHILE-EAEELCDRVIILND-GKIIAEGTPEELKEKF 228 (293)
T ss_pred eCCcHH-HHHHhCCEEEEEeC-CEEEEeCCHHHHHHhh
Confidence 999975 78999999999987 9999999998876654
No 10
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-53 Score=336.44 Aligned_cols=172 Identities=31% Similarity=0.434 Sum_probs=155.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+|+|+.+ |++|+|.++|.++.. ....++||||++.++|.+||.||+.++..... ....+..
T Consensus 35 lGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~ 108 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEAR 108 (248)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHH
Confidence 69999999999999999999 799999999999833 23557999999999999999999999877543 2234455
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t 159 (197)
+++.++++.+||.+..+++|.+|||||||||+|||||+.+|++|+|||||++||..++..+.+.+.++.++ +.|++++|
T Consensus 109 ~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT 188 (248)
T COG1116 109 ERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT 188 (248)
T ss_pred HHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999998764 89999999
Q ss_pred cCCcchHHhhcCeEEEEeCC
Q psy4235 160 HQPTSGVFEKFDTVSLLAHG 179 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~g 179 (197)
||.. ++..++|||++|.++
T Consensus 189 Hdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 189 HDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred CCHH-HHHhhhCEEEEecCC
Confidence 9985 789999999999874
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.5e-53 Score=332.61 Aligned_cols=175 Identities=34% Similarity=0.513 Sum_probs=154.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+|||||||||||++|.|+.. |++|+|+++|.++... . .++.+|||||+.+|+|.+||.||+.++..+....
T Consensus 37 ~GpSGSGKSTLLniig~ld~-pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~- 114 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLDK-PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS- 114 (226)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC-
Confidence 69999999999999999999 6999999999998632 1 2456999999999999999999999876554321
Q ss_pred ccHHHHHHHHHHHHHHcCCccccc-ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQ-VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE- 151 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~- 151 (197)
.....+++.++++.+||.+..+ ++|.+|||||||||+|||||+++|+++|+||||.+||..+.+.+++++++++++
T Consensus 115 --~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~ 192 (226)
T COG1136 115 --AGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER 192 (226)
T ss_pred --hhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc
Confidence 1145677889999999997766 889999999999999999999999999999999999999999999999999866
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEE
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLL 182 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i 182 (197)
|+|+|++|||+ .+..+|||++.+.+ |++
T Consensus 193 g~tii~VTHd~--~lA~~~dr~i~l~d-G~~ 220 (226)
T COG1136 193 GKTIIMVTHDP--ELAKYADRVIELKD-GKI 220 (226)
T ss_pred CCEEEEEcCCH--HHHHhCCEEEEEeC-Cee
Confidence 89999999996 57899999999998 664
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-53 Score=337.50 Aligned_cols=189 Identities=32% Similarity=0.423 Sum_probs=162.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCC--CCCCCHHHHHHHHHHccCC-ccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFL--IEELTVLEHLQFMAKLTMD-RRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~--~~~ltv~e~l~~~~~~~~~-~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.....+.+||||||...+ -..+||+|.+.++...+.. .....+
T Consensus 36 iGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~ 114 (254)
T COG1121 36 IGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK 114 (254)
T ss_pred ECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccH
Confidence 69999999999999999999 7999999999987655445679999996432 2336999999986432211 111223
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
.+++.++++|+++|+.++.++++++|||||+|||.|||||+++|++|+|||||+|+|+.++..|+++|++++++|+||++
T Consensus 115 ~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~ 194 (254)
T COG1121 115 KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLM 194 (254)
T ss_pred HHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|||+. .+..+||+++.|+ +++++.|+++++++
T Consensus 195 vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~~~~ 227 (254)
T COG1121 195 VTHDLG-LVMAYFDRVICLN--RHLIASGPPEEVLT 227 (254)
T ss_pred EeCCcH-HhHhhCCEEEEEc--CeeEeccChhhccC
Confidence 999985 7999999999995 56778899988765
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-53 Score=322.35 Aligned_cols=187 Identities=28% Similarity=0.401 Sum_probs=172.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+|||||||||+||+|++++. |++|.|+++|.+.... ..++.||.++.+..+|..||++|||.|++.++.. ...+
T Consensus 34 LG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l---~~~~ 109 (245)
T COG4555 34 LGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL---SRKE 109 (245)
T ss_pred EcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh---hhhH
Confidence 59999999999999999999 7999999999998543 4578899999888999999999999999987643 3456
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.++++.++.+.|+|.+++++++++||.||||||+|||||+++|++++|||||||||..+++.+.+.+++++++|++||++
T Consensus 110 ~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFS 189 (245)
T COG4555 110 IKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189 (245)
T ss_pred HHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||.+ .++..+||+++++++ |.+++.|+++++..
T Consensus 190 SH~m-~EvealCDrvivlh~-Gevv~~gs~~~l~~ 222 (245)
T COG4555 190 SHIM-QEVEALCDRVIVLHK-GEVVLEGSIEALDA 222 (245)
T ss_pred cccH-HHHHHhhheEEEEec-CcEEEcCCHHHHHH
Confidence 9997 479999999999998 99999999987754
No 14
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-52 Score=314.19 Aligned_cols=187 Identities=29% Similarity=0.396 Sum_probs=169.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+.. |.+|+|++||++.+.. +..|-++++||++++|..+||.+|+.++..-. .+. ....
T Consensus 31 ~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~--LkL-~a~~ 106 (231)
T COG3840 31 LGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG--LKL-NAEQ 106 (231)
T ss_pred ECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc--ccc-CHHH
Confidence 69999999999999999998 7999999999998653 45677999999999999999999999875422 122 2456
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
+++++.++..+||..+.++.|.+|||||||||+|||+|+.+-+||+||||||+|||.-+.++..++.+++.+ +.|++++
T Consensus 107 r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV 186 (231)
T COG3840 107 REKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV 186 (231)
T ss_pred HHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE
Confidence 788999999999999999999999999999999999999999999999999999999999999999999865 8899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+++ ++.+++|+++++.+ |+|.+.|+.++++.
T Consensus 187 TH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~~~~~ 219 (231)
T COG3840 187 THHPE-DAARIADRVVFLDN-GRIAAQGSTQELLS 219 (231)
T ss_pred eCCHH-HHHHhhhceEEEeC-CEEEeeccHHHHhc
Confidence 99985 79999999999998 99999999988764
No 15
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-52 Score=325.52 Aligned_cols=190 Identities=34% Similarity=0.449 Sum_probs=168.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC---
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD--- 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~--- 71 (197)
|||||||||||||+|+|+.. |++|+|.++|.++.. ..+++.+||+||++++.+.+||.+|+..+..-+..
T Consensus 36 IG~SGaGKSTLLR~lngl~d-~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~ 114 (258)
T COG3638 36 IGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWR 114 (258)
T ss_pred ECCCCCcHHHHHHHHhcccC-CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHH
Confidence 69999999999999999888 799999999988753 23567899999999999999999999876433221
Q ss_pred --ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 72 --RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 72 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.....++.+..+-+.|+++|+.+.+.++..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|++++
T Consensus 115 slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in 194 (258)
T COG3638 115 SLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN 194 (258)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHH
Confidence 122334567788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++ |.|+|+..|+.+ .+.++|||++-|++ |+++++|+++++..
T Consensus 195 ~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~-G~ivfDg~~~el~~ 237 (258)
T COG3638 195 QEDGITVIVNLHQVD-LAKKYADRIIGLKA-GRIVFDGPASELTD 237 (258)
T ss_pred HHcCCEEEEEechHH-HHHHHHhhheEecC-CcEEEeCChhhhhH
Confidence 64 899999999985 89999999999987 99999999987543
No 16
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-51 Score=345.20 Aligned_cols=187 Identities=23% Similarity=0.338 Sum_probs=167.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+.+ |++|+|+++|+++... ..++.+|||||++.+||.+||+||+.|+..... ....+.
T Consensus 36 lG~sGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~ 111 (356)
T PRK11650 36 VGPSGCGKSTLLRMVAGLER-ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEI 111 (356)
T ss_pred ECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHH
Confidence 59999999999999999998 7999999999998542 234679999999999999999999999865321 223344
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ +.|+|++
T Consensus 112 ~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v 191 (356)
T PRK11650 112 EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV 191 (356)
T ss_pred HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999999875 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 192 THd~~-ea~~l~D~i~vl~~-G~i~~~g~~~~~~~ 224 (356)
T PRK11650 192 THDQV-EAMTLADRVVVMNG-GVAEQIGTPVEVYE 224 (356)
T ss_pred eCCHH-HHHHhCCEEEEEeC-CEEEEECCHHHHHh
Confidence 99974 78999999999987 99999999998754
No 17
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.2e-51 Score=341.99 Aligned_cols=187 Identities=27% Similarity=0.462 Sum_probs=166.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+.+ |++|+|+++|+++... ..++.+||+||++.+++.+||.||+.++..... .
T Consensus 37 iG~sGaGKSTLlr~I~gl~~-p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~ 112 (343)
T TIGR02314 37 IGASGAGKSTLIRCVNLLER-PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---T 112 (343)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---C
Confidence 69999999999999999998 7999999999998542 135679999999999999999999998764321 2
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
......+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ +.
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~ 192 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 23345677899999999999999999999999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||++||++ +.+.++||++++|++ |++++.|++++++.
T Consensus 193 tiiliTH~~-~~v~~~~d~v~vl~~-G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 193 TILLITHEM-DVVKRICDCVAVISN-GELIEQGTVSEIFS 230 (343)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHc
Confidence 999999997 478899999999987 99999999988753
No 18
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.9e-51 Score=337.90 Aligned_cols=188 Identities=26% Similarity=0.373 Sum_probs=167.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... ..++.+||+||++.+++.+||+||+.++...+. ....+
T Consensus 39 lGpNGaGKSTLl~~l~Gl~~-p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~ 114 (306)
T PRK13537 39 LGPNGAGKTTTLRMLLGLTH-PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAA 114 (306)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence 69999999999999999998 7999999999998542 345679999999999999999999998765432 12233
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+++.++++.+++.+..++++++||+|||||++||+||+++|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~ 194 (306)
T PRK13537 115 ARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLT 194 (306)
T ss_pred HHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999998779999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||++. ++.++||++++|++ |++++.|+++++...
T Consensus 195 sH~l~-e~~~~~d~i~il~~-G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 195 THFME-EAERLCDRLCVIEE-GRKIAEGAPHALIES 228 (306)
T ss_pred CCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhc
Confidence 99975 78899999999988 899999999988643
No 19
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-50 Score=341.96 Aligned_cols=187 Identities=27% Similarity=0.404 Sum_probs=168.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+|||||||||||++|+|+.+ |++|+|.++|+++... ..++.+||+||++.+||.+||.||+.|+..... ......
T Consensus 36 ~GpsGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~ 111 (353)
T TIGR03265 36 LGPSGCGKTTLLRIIAGLER-QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---MGRAEV 111 (353)
T ss_pred ECCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC---CCHHHH
Confidence 59999999999999999998 7999999999998642 345679999999999999999999999865321 223345
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.++++++++.++|.+.+++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ +.|+|++
T Consensus 112 ~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~v 191 (353)
T TIGR03265 112 AERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191 (353)
T ss_pred HHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999775 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 192 THd~~-ea~~l~d~i~vl~~-G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 192 THDQE-EALSMADRIVVMNH-GVIEQVGTPQEIYR 224 (353)
T ss_pred cCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 99974 78999999999998 89999999998865
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=340.97 Aligned_cols=187 Identities=24% Similarity=0.376 Sum_probs=167.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+.+ |++|+|+++|.++... ..++.+||+||++.+||.+||+||+.|+...+. ....+.
T Consensus 38 lGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~ 113 (351)
T PRK11432 38 LGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEER 113 (351)
T ss_pred ECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHH
Confidence 59999999999999999998 7999999999998643 234679999999999999999999999865432 223345
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ +.|+|++
T Consensus 114 ~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v 193 (351)
T PRK11432 114 KQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV 193 (351)
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 678899999999999999999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 194 THd~~-e~~~laD~i~vm~~-G~i~~~g~~~~~~~ 226 (351)
T PRK11432 194 THDQS-EAFAVSDTVIVMNK-GKIMQIGSPQELYR 226 (351)
T ss_pred cCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 99974 78899999999997 99999999998764
No 21
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6e-51 Score=308.47 Aligned_cols=180 Identities=29% Similarity=0.437 Sum_probs=163.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|.+..+ |++|+|+++|.++... -++++||+|||+..+.+..||+||++|...... .
T Consensus 34 ~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~ 109 (223)
T COG2884 34 TGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---K 109 (223)
T ss_pred ECCCCCCHHHHHHHHHhhhc-CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---C
Confidence 59999999999999999998 7999999999998642 257889999999999999999999999887643 2
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
...+.++++.++|+.+||.+..+..|.+|||||||||+||||++++|++||.||||.+|||....+|++++.++...|.|
T Consensus 110 ~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtT 189 (223)
T COG2884 110 PPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189 (223)
T ss_pred CHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
|+++|||. ..+...-.|++.+++ |+++.+.
T Consensus 190 Vl~ATHd~-~lv~~~~~rvl~l~~-Grl~~d~ 219 (223)
T COG2884 190 VLMATHDL-ELVNRMRHRVLALED-GRLVRDE 219 (223)
T ss_pred EEEEeccH-HHHHhccCcEEEEeC-CEEEecc
Confidence 99999996 467777888999987 8887543
No 22
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.8e-50 Score=335.03 Aligned_cols=188 Identities=27% Similarity=0.423 Sum_probs=166.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... ..++.+||+||++.+++.+||.||+.+....+. .....
T Consensus 25 ~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~ 100 (302)
T TIGR01188 25 LGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG---LPKDE 100 (302)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence 69999999999999999998 7999999999987532 335679999999999999999999998765432 12233
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++
T Consensus 101 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~ 180 (302)
T TIGR01188 101 AEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180 (302)
T ss_pred HHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45678899999999988999999999999999999999999999999999999999999999999999998778999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||++. ++..+||++++|++ |++++.|+++++...
T Consensus 181 sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 181 THYME-EADKLCDRIAIIDH-GRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHHh
Confidence 99974 78899999999987 899999999887654
No 23
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-51 Score=324.80 Aligned_cols=188 Identities=30% Similarity=0.425 Sum_probs=168.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC----cccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~----~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+|+||||||||+++++|+++ |++|.|.++|.++. ....++++|||||+| ..+..-||.+.++|+..... .+
T Consensus 36 ~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g---~~ 111 (235)
T COG1122 36 IGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG---LP 111 (235)
T ss_pred ECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC---CC
Confidence 59999999999999999999 79999999999976 235678899999997 34445599999999876442 33
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
.++.++++.++++.+++.+.+++++.+|||||||||+||.+|+.+|++||||||||+||+..++++++++++++.+ |.|
T Consensus 112 ~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~t 191 (235)
T COG1122 112 REEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKT 191 (235)
T ss_pred HHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCe
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999999987 689
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+|++|||.. .+..+||++++|++ |+++.+|+|.++++.
T Consensus 192 ii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p~~i~~~ 229 (235)
T COG1122 192 IIIVTHDLE-LVLEYADRVVVLDD-GKILADGDPAEIFND 229 (235)
T ss_pred EEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCHHHHhhh
Confidence 999999974 89999999999998 999999999988765
No 24
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.7e-50 Score=340.11 Aligned_cols=187 Identities=25% Similarity=0.376 Sum_probs=166.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cc----cceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VM----SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++... .+ ++.++|+||++.+|+.+||.||+.|......
T Consensus 25 ~G~sGsGKSTLLr~L~Gl~~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~--- 100 (363)
T TIGR01186 25 MGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLG--- 100 (363)
T ss_pred ECCCCChHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcC---
Confidence 69999999999999999998 7999999999998642 12 4679999999999999999999998765421
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
....+..+++.++++.++|..+.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+.+++++ +
T Consensus 101 ~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~ 180 (363)
T TIGR01186 101 WPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180 (363)
T ss_pred CCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 223345678899999999999999999999999999999999999999999999999999999999999999999765 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|+|++||+.. ++.++||++++|++ |+++..|++++++.
T Consensus 181 ~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 181 KTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPDEILR 219 (363)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHHHHHh
Confidence 99999999975 78999999999987 89999999998764
No 25
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-50 Score=340.90 Aligned_cols=188 Identities=24% Similarity=0.376 Sum_probs=167.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCce--eEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQ--GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~--G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|||||||||||++|+|+.+ |++ |+|+++|+++... ..++.++|+||++.+||.+||+||+.|+..... ....
T Consensus 37 lGpsGsGKSTLLr~iaGl~~-p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~ 112 (362)
T TIGR03258 37 IGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKA 112 (362)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHH
Confidence 59999999999999999998 799 9999999998542 234679999999999999999999999865432 2233
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~~~i 155 (197)
...+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+
T Consensus 113 ~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~ti 192 (362)
T TIGR03258 113 DIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192 (362)
T ss_pred HHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999876 7899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|++||+.. ++..+||++++|++ |+++..|+++++...
T Consensus 193 l~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 193 LCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQALYDA 229 (362)
T ss_pred EEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 99999974 78999999999987 999999999988653
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-50 Score=320.94 Aligned_cols=188 Identities=30% Similarity=0.466 Sum_probs=163.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.++|++|++.+++.+||.||+.+...... ..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~ 108 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RL 108 (235)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CC
Confidence 69999999999999999998 7999999999987532 235679999999999999999999988643221 11
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 188 (235)
T cd03261 109 SEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188 (235)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 22334567888999999998889999999999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus 189 tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 226 (235)
T cd03261 189 TSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTPEELRA 226 (235)
T ss_pred EEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCHHHHcC
Confidence 9999999974 78889999999987 88988999887653
No 27
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.7e-50 Score=337.78 Aligned_cols=190 Identities=30% Similarity=0.442 Sum_probs=167.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~ 78 (197)
+||||||||||||+|+|+++ |++|+|+++|+++... ..++.++|+||++.+||.+||.||+.|....... .......
T Consensus 34 lGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~ 112 (353)
T PRK10851 34 LGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAA 112 (353)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHH
Confidence 59999999999999999998 7999999999998542 2346799999999999999999999987643210 1122344
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii 157 (197)
..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|+
T Consensus 113 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~ 192 (353)
T PRK10851 113 IKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF 192 (353)
T ss_pred HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999876 889999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+||+.. ++..+||++++|++ |+++..|++++++.
T Consensus 193 vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~~i~~ 226 (353)
T PRK10851 193 VTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPDQVWR 226 (353)
T ss_pred EeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 999974 78999999999997 99999999998864
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.3e-50 Score=339.50 Aligned_cols=187 Identities=25% Similarity=0.369 Sum_probs=167.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+|||||||||||++|+|+.+ |++|+|.++|+++... ..++.++|+||++.+||.+||.||+.|+..... ......
T Consensus 46 lGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~ 121 (375)
T PRK09452 46 LGPSGCGKTTVLRLIAGFET-PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEI 121 (375)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHH
Confidence 59999999999999999998 7999999999998542 235679999999999999999999999765321 223344
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~v 201 (375)
T PRK09452 122 TPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFV 201 (375)
T ss_pred HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999999875 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. ++..+||++++|++ |+++..|++++++.
T Consensus 202 THd~~-ea~~laDri~vl~~-G~i~~~g~~~~i~~ 234 (375)
T PRK09452 202 THDQE-EALTMSDRIVVMRD-GRIEQDGTPREIYE 234 (375)
T ss_pred eCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 99974 78999999999997 99999999998764
No 29
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.5e-50 Score=335.22 Aligned_cols=188 Identities=27% Similarity=0.396 Sum_probs=166.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... ..++.+||+||++.+++.+||.||+.++...+.. ....
T Consensus 73 lGpNGaGKSTLl~~L~Gl~~-p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~---~~~~ 148 (340)
T PRK13536 73 LGPNGAGKSTIARMILGMTS-PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM---STRE 148 (340)
T ss_pred ECCCCCCHHHHHHHHHcCCC-CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC---CHHH
Confidence 69999999999999999998 7999999999997532 3456799999999999999999999986554321 2223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.++|.+..++++.+||+|||||++||+||+++|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus 149 ~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilis 228 (340)
T PRK13536 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228 (340)
T ss_pred HHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999998789999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||+.. ++.++||++++|++ |++++.|+++++...
T Consensus 229 SH~l~-e~~~~~d~i~il~~-G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 229 THFME-EAERLCDRLCVLEA-GRKIAEGRPHALIDE 262 (340)
T ss_pred CCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHhh
Confidence 99975 78999999999988 899999999988653
No 30
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-50 Score=315.67 Aligned_cols=186 Identities=29% Similarity=0.376 Sum_probs=165.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+|+||||||||.++|+|+.+ |++|+|.++|.++.+. ..++.+.+|||+| .+.|..||.+.|..+...+...
T Consensus 39 vGeSGsGKSTL~r~l~Gl~~-p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~-- 115 (252)
T COG1124 39 VGESGSGKSTLARLLAGLEK-PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS-- 115 (252)
T ss_pred EcCCCCCHHHHHHHHhcccC-CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc--
Confidence 69999999999999999999 7999999999887653 3567799999997 5889999999998877653221
Q ss_pred cHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 75 TWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
..++++.++++.+||. .+++++|.+|||||+||++|||||+.+|++||||||||+||+..+.+|+++|.+++++ +
T Consensus 116 ---~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~ 192 (252)
T COG1124 116 ---KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192 (252)
T ss_pred ---HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence 2334599999999997 6789999999999999999999999999999999999999999999999999999875 7
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
.|.|++|||.. .+..+|||+++|++ |.+++.++..++...
T Consensus 193 lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~~l~~~ 232 (252)
T COG1124 193 LTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTEELLSH 232 (252)
T ss_pred ceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechhhhhcC
Confidence 89999999974 89999999999988 999999999887654
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=311.75 Aligned_cols=186 Identities=28% Similarity=0.434 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
|||||||||||||+++-.... ..+|+|.++|+++-.. .+|+++|+|||.|+.|| +|++||++|+.+.+..
T Consensus 39 IGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~ 117 (253)
T COG1117 39 IGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI 117 (253)
T ss_pred ECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc
Confidence 699999999999999865431 1469999999998542 46788999999999999 8999999999887754
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.. +...+.++..|+...|. +.+++.+..||||||||++|||||+.+|++||||||||+|||.+..+|.+++.+
T Consensus 118 ~~---~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~e 194 (253)
T COG1117 118 KD---KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194 (253)
T ss_pred ch---HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHH
Confidence 32 45667888888887774 567788999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ .-||+||||.+ ..+.+++|+..++.. |++++.|++++++.
T Consensus 195 Lk~-~yTIviVTHnm-qQAaRvSD~taFf~~-G~LvE~g~T~~iF~ 237 (253)
T COG1117 195 LKK-KYTIVIVTHNM-QQAARVSDYTAFFYL-GELVEFGPTDKIFT 237 (253)
T ss_pred HHh-ccEEEEEeCCH-HHHHHHhHhhhhhcc-cEEEEEcCHHhhhc
Confidence 984 57999999997 589999999999987 89999999998764
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-49 Score=336.90 Aligned_cols=187 Identities=22% Similarity=0.330 Sum_probs=166.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+.+ |++|+|+++|+++... ..++.+||+||++.+||.+||.||+.|+..... ....+.
T Consensus 51 lGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~ 126 (377)
T PRK11607 51 LGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEI 126 (377)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence 59999999999999999998 7999999999998542 345679999999999999999999999765321 123345
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++ +.|+|++
T Consensus 127 ~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v 206 (377)
T PRK11607 127 ASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206 (377)
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 677899999999999999999999999999999999999999999999999999999999999999998754 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 207 THd~~-ea~~laDri~vl~~-G~i~~~g~~~~~~~ 239 (377)
T PRK11607 207 THDQE-EAMTMAGRIAIMNR-GKFVQIGEPEEIYE 239 (377)
T ss_pred cCCHH-HHHHhCCEEEEEeC-CEEEEEcCHHHHHh
Confidence 99974 78999999999987 99999999998864
No 33
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-49 Score=335.84 Aligned_cols=187 Identities=27% Similarity=0.396 Sum_probs=165.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|.++|+++... ..++.++|+||++.+|+.+||.||+.|+..... ......
T Consensus 35 ~G~nGsGKSTLL~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~ 110 (369)
T PRK11000 35 VGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEI 110 (369)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHH
Confidence 59999999999999999998 7999999999998542 234669999999999999999999998764321 122344
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ +.|+|++
T Consensus 111 ~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~v 190 (369)
T PRK11000 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190 (369)
T ss_pred HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 191 THd~~-~~~~~~d~i~vl~~-G~i~~~g~~~~i~~ 223 (369)
T PRK11000 191 THDQV-EAMTLADKIVVLDA-GRVAQVGKPLELYH 223 (369)
T ss_pred eCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 99974 78899999999997 99999999988754
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-50 Score=314.94 Aligned_cols=190 Identities=26% Similarity=0.342 Sum_probs=168.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccc----cceEEEEecCCCCCCCCCHHHHHHHHHHccC------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM----SRISGYVAQQDFLIEELTVLEHLQFMAKLTM------ 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~----~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~------ 70 (197)
|||||||||||+|+|+|+++ |++|+|.++|++++..+. +.-++..||...+|++|||.||+..+...+.
T Consensus 36 IGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l 114 (250)
T COG0411 36 IGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLL 114 (250)
T ss_pred ECCCCCCceeeeeeeccccc-CCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhh
Confidence 79999999999999999999 799999999999975432 3458899999999999999999998754221
Q ss_pred -C--ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 71 -D--RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 71 -~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
. ......+..+++.++|+++||.+.++++.++||+|||+|+.|||||+.+|++|+||||.+||.+....++.+.|++
T Consensus 115 ~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~ 194 (250)
T COG0411 115 GRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194 (250)
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHH
Confidence 0 0112345667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++++ |.||+++.||+. .++.+||||+||+. |+++++|+|+++.+
T Consensus 195 i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~eV~~ 239 (250)
T COG0411 195 LRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEEVRN 239 (250)
T ss_pred HHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHHHhc
Confidence 9985 689999999974 89999999999998 89889999999865
No 35
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.6e-49 Score=326.73 Aligned_cols=188 Identities=28% Similarity=0.408 Sum_probs=164.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... ..++.+||+||++.+++.+||.||+.+....+. .....
T Consensus 36 ~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~ 111 (303)
T TIGR01288 36 LGPNGAGKSTIARMLLGMIS-PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTRE 111 (303)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHH
Confidence 59999999999999999998 7999999999987432 235679999999999999999999987544321 12223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus 112 ~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~ 191 (303)
T TIGR01288 112 IEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191 (303)
T ss_pred HHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||+.. ++..+||++++|++ |+++..|+++++...
T Consensus 192 sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 192 THFME-EAERLCDRLCVLES-GRKIAEGRPHALIDE 225 (303)
T ss_pred CCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHhh
Confidence 99974 78899999999987 899999999887643
No 36
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.6e-49 Score=328.49 Aligned_cols=187 Identities=26% Similarity=0.367 Sum_probs=165.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... ..++.++|+||++.+|+.+||.||+.|+..... ......
T Consensus 2 ~G~nGsGKSTLl~~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~ 77 (325)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQ-PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRAEI 77 (325)
T ss_pred cCCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHHHH
Confidence 69999999999999999998 7999999999998542 234679999999999999999999998754321 122334
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.++ +.|+|++
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 567889999999999999999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 158 THd~~-e~~~~~d~i~vl~~-G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 158 THDQE-EAMTMSDRIAIMRK-GKIAQIGTPEEIYE 190 (325)
T ss_pred eCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 99974 78899999999987 89999999988764
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-49 Score=312.28 Aligned_cols=185 Identities=29% Similarity=0.417 Sum_probs=161.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ...++.++|++|++.+++.+||.+|+.+...... .....
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~ 107 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAE 107 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHH
Confidence 59999999999999999988 799999999988743 2234578999999999999999999988654321 12223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii 157 (197)
..+.+.++++.+++.+..++++.+||||||||++||||++.+|++|||||||++||+.+++.+.+.|++++++ +.++|+
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 187 (220)
T cd03265 108 RRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 (220)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4567889999999998889999999999999999999999999999999999999999999999999999876 889999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
+||+.. .+..+||++++|++ |+++..++++++
T Consensus 188 ~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (220)
T cd03265 188 TTHYME-EAEQLCDRVAIIDH-GRIIAEGTPEEL 219 (220)
T ss_pred EeCCHH-HHHHhCCEEEEEeC-CEEEEeCChHHc
Confidence 999974 78899999999987 888888887653
No 38
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=7.6e-49 Score=314.39 Aligned_cols=190 Identities=27% Similarity=0.386 Sum_probs=163.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc---
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR--- 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~--- 73 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .++.++|+||++.+++.+||.||+.+.........
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~ 110 (236)
T cd03219 32 IGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL 110 (236)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc
Confidence 59999999999999999998 79999999999875421 23458999999999999999999988654321110
Q ss_pred ----ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 74 ----TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 74 ----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 190 (236)
T cd03219 111 ARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR 190 (236)
T ss_pred ccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0122344578899999999988999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 191 ~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 232 (236)
T cd03219 191 ERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTPDEVRN 232 (236)
T ss_pred HCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCHHHhcc
Confidence 77899999999975 78899999999987 88888899887753
No 39
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-50 Score=323.43 Aligned_cols=187 Identities=26% Similarity=0.371 Sum_probs=170.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+|-||||||||+|+|+++++ |++|+|+++|.++... . .++.+++|||...++|..||.||+.|+.....
T Consensus 60 MGLSGSGKSTLvR~~NrLie-pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~G--- 135 (386)
T COG4175 60 MGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG--- 135 (386)
T ss_pred EecCCCCHHHHHHHHhccCC-CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecC---
Confidence 58999999999999999998 7999999999998532 2 24569999999999999999999999987653
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
...++.++++.++++.+||..+.+++|.+|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++ +
T Consensus 136 v~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~ 215 (386)
T COG4175 136 VPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215 (386)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC
Confidence 345677889999999999999999999999999999999999999999999999999999999999999999999876 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+||+++|||.+ ++.++.|||.+|++ |+|+..|+|+|++.
T Consensus 216 KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp~eIl~ 254 (386)
T COG4175 216 KTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTPEEILL 254 (386)
T ss_pred CeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCHHHHHc
Confidence 99999999985 79999999999987 99999999999864
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-49 Score=330.67 Aligned_cols=187 Identities=29% Similarity=0.470 Sum_probs=164.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... ..++.++|+||++.+++.+||.||+.+...... .
T Consensus 37 iG~nGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~ 112 (343)
T PRK11153 37 IGASGAGKSTLIRCINLLER-PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---T 112 (343)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---C
Confidence 69999999999999999998 7999999999998532 124679999999999999999999998754321 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
......+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.
T Consensus 113 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 192 (343)
T PRK11153 113 PKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL 192 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 22334567889999999998899999999999999999999999999999999999999999999999999999765 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|+|++||++. .+.++||++++|++ |++++.|++++++.
T Consensus 193 tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~~~~~ 230 (343)
T PRK11153 193 TIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVSEVFS 230 (343)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999974 78899999999987 89989999887753
No 41
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.5e-49 Score=311.90 Aligned_cols=175 Identities=26% Similarity=0.408 Sum_probs=153.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... .+++.++|++|++.+++.+||.||+.+...... .
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~ 110 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGIEK-PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---V 110 (216)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---C
Confidence 59999999999999999998 7999999999987431 134679999999999999999999998654321 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.|
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 190 (216)
T TIGR00960 111 PPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTT 190 (216)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence 12234567889999999998899999999999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
+|++||+.. .+..+||++++|++ |+
T Consensus 191 ii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 191 VLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999974 67889999999987 64
No 42
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-48 Score=313.28 Aligned_cols=190 Identities=28% Similarity=0.415 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+||.||+.+....... .......
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 112 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAE 112 (239)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHH
Confidence 69999999999999999988 7999999999987542 2245689999999999999999999886433211 0011223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii 157 (197)
..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.++|++++++ +.|+|+
T Consensus 113 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii 192 (239)
T cd03296 113 IRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF 192 (239)
T ss_pred HHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3456788999999998889999999999999999999999999999999999999999999999999999875 889999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 193 ~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 226 (239)
T cd03296 193 VTHDQE-EALEVADRVVVMNK-GRIEQVGTPDEVYD 226 (239)
T ss_pred EeCCHH-HHHHhCCEEEEEEC-CeEEEecCHHHHhc
Confidence 999974 68899999999987 88988999887653
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=309.00 Aligned_cols=180 Identities=31% Similarity=0.423 Sum_probs=156.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|+|.++|+++... ..++.++|+||++.+++.+|+.||+.+...... ......
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~ 107 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLER-PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEI 107 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHH
Confidence 69999999999999999998 7999999999987532 234569999999999999999999987653321 112234
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.+||++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 187 (213)
T cd03259 108 RARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187 (213)
T ss_pred HHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 467889999999998899999999999999999999999999999999999999999999999999999764 8899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
||++. .+..+||++++|++ |+++..|
T Consensus 188 sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 188 THDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred ecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99974 68899999999987 8876543
No 44
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.6e-48 Score=311.69 Aligned_cols=186 Identities=27% Similarity=0.415 Sum_probs=162.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... . .++.++|++|++.+++.+||.||+.+...... ...
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~ 107 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSK 107 (232)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCH
Confidence 59999999999999999998 7999999999987432 1 23468999999999999999999988653321 112
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++++++.|+|
T Consensus 108 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii 187 (232)
T cd03218 108 KEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187 (232)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 23445678999999999889999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++||++. .+..+||++++|++ |+++..|+++++.
T Consensus 188 ~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 221 (232)
T cd03218 188 ITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPEEIA 221 (232)
T ss_pred EEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHHHhh
Confidence 9999974 78999999999987 8888888888764
No 45
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.4e-48 Score=322.14 Aligned_cols=187 Identities=26% Similarity=0.416 Sum_probs=165.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... ..++.+||+||++.+++.+||.||+.+....+. .....
T Consensus 34 ~G~NGaGKTTLl~~l~Gl~~-~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~ 109 (301)
T TIGR03522 34 LGPNGAGKSTTMKIITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQL 109 (301)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHH
Confidence 69999999999999999988 7999999999987542 345679999999999999999999998765432 12233
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+++.++++.++|.+..+++++.||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++
T Consensus 110 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~ 188 (301)
T TIGR03522 110 LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILS 188 (301)
T ss_pred HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999965 7899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||++. ++.++||++++|++ |++++.|+++++...
T Consensus 189 sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 189 THIMQ-EVEAICDRVIIINK-GKIVADKKLDELSAA 222 (301)
T ss_pred cCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHHh
Confidence 99974 78999999999987 999999999987653
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-48 Score=308.01 Aligned_cols=181 Identities=29% Similarity=0.412 Sum_probs=157.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+.+ |++|+|.++|.++.. .++.++|++|++.+++.+|+.||+.+...... .......
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~ 109 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEAR 109 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHH
Confidence 59999999999999999988 799999999998753 34678999999999998999999988654321 1122334
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|+++++ .+.|+|++|
T Consensus 110 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~s 189 (220)
T cd03293 110 ERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVT 189 (220)
T ss_pred HHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 6788999999999888999999999999999999999999999999999999999999999999999865 488999999
Q ss_pred cCCcchHHhhcCeEEEEeC-CcEEEEecCh
Q psy4235 160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQV 188 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~ 188 (197)
|++. .+..+||++++|++ +|+++..++.
T Consensus 190 H~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 190 HDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9974 68899999999983 3888877665
No 47
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-48 Score=310.97 Aligned_cols=187 Identities=26% Similarity=0.447 Sum_probs=162.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+...... .
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~ 112 (233)
T cd03258 37 IGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---V 112 (233)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---C
Confidence 59999999999999999998 7999999999987532 124569999999999999999999988654321 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
......+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ +.
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 192 (233)
T cd03258 113 PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL 192 (233)
T ss_pred CHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 22233557889999999998899999999999999999999999999999999999999999999999999999775 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus 193 tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 230 (233)
T cd03258 193 TIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTVEEVFA 230 (233)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhc
Confidence 9999999974 67889999999987 89988898887653
No 48
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-48 Score=331.25 Aligned_cols=187 Identities=25% Similarity=0.388 Sum_probs=164.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++.... .++.++|+||++.+|+.+||.||+.+......
T Consensus 60 vG~NGsGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~--- 135 (400)
T PRK10070 60 MGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG--- 135 (400)
T ss_pred ECCCCchHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---
Confidence 59999999999999999998 79999999999985321 13469999999999999999999998754321
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~ 152 (197)
.......+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ .+
T Consensus 136 ~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g 215 (400)
T PRK10070 136 INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215 (400)
T ss_pred CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC
Confidence 12233456788999999999999999999999999999999999999999999999999999999999999999975 48
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|||++||+.. ++.++||++++|++ |+++..|+++++..
T Consensus 216 ~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~~l~~ 254 (400)
T PRK10070 216 RTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPDEILN 254 (400)
T ss_pred CeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHHHHHh
Confidence 99999999974 78899999999987 89988899888754
No 49
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-50 Score=305.21 Aligned_cols=189 Identities=24% Similarity=0.408 Sum_probs=169.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccccc----ceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS----RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~----~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+|||||||||.+.++.|+.+ |++|+|+++|.+++..++. .-+||+||++..|..+||.||+.......... ...
T Consensus 36 LGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d-~~~ 113 (243)
T COG1137 36 LGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD-LKK 113 (243)
T ss_pred ECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc-hhH
Confidence 59999999999999999999 7999999999999865432 34899999999999999999999877655321 122
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
.+.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.+|+.++|||||+|+||.+...|.++++.++..|..|+
T Consensus 114 ~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvL 193 (243)
T COG1137 114 AERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVL 193 (243)
T ss_pred HHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEE
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|+-|... +...+|||.+++.+ |++.++|+|+++.+
T Consensus 194 ITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ei~~ 228 (243)
T COG1137 194 ITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEEIVN 228 (243)
T ss_pred EccccHH-HHHhhhheEEEEec-CeEEecCCHHHHhc
Confidence 9999875 68899999999998 99999999998864
No 50
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.7e-48 Score=332.75 Aligned_cols=189 Identities=29% Similarity=0.380 Sum_probs=164.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~ 76 (197)
+||||||||||||+|+|+++ |++|+|+++|.++.. ...++.+||++|++.+++.+||.||+.++...+.. .....
T Consensus 35 iGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~ 113 (402)
T PRK09536 35 VGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT 113 (402)
T ss_pred ECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCC
Confidence 69999999999999999998 799999999998754 23456799999999999999999999885422110 01011
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+.+.++++.+++.+..++++.+||||||||++|||||+++|++|||||||++||+.++.+++++|+++++++.|||
T Consensus 114 ~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TII 193 (402)
T PRK09536 114 ETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAV 193 (402)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 23456789999999999999999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++||++. .+.++||++++|++ |+++..|++++++
T Consensus 194 ivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ev~ 227 (402)
T PRK09536 194 AAIHDLD-LAARYCDELVLLAD-GRVRAAGPPADVL 227 (402)
T ss_pred EEECCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHh
Confidence 9999974 78899999999987 8888999998754
No 51
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-49 Score=308.97 Aligned_cols=189 Identities=28% Similarity=0.458 Sum_probs=174.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|||||||||++|+|.|+++ |++|+|.++|.+++.. .+.+|||+|.+..+|+.+||.|.+.|++.+.. .+.++.+
T Consensus 34 lG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~ 108 (300)
T COG4152 34 LGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQ 108 (300)
T ss_pred ecCCCCCccchHHHHhccCC-ccCceEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHH
Confidence 69999999999999999999 7999999999998653 34568999999999999999999999998864 3456778
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+..||+++++.....+++.+||.|++|++.+..+++++|+++|||||||||||.+.+.+.+.+.+++++|.|||++||
T Consensus 109 ~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH 188 (300)
T COG4152 109 KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH 188 (300)
T ss_pred HHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
.+ +.+.++||++++|++ |+.+..|+..++...|.
T Consensus 189 ~M-e~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~G 222 (300)
T COG4152 189 RM-EHVEELCDRLLMLKK-GQTVLYGTVEDIRRSFG 222 (300)
T ss_pred hH-HHHHHHhhhhheecC-CceEEeccHHHHHHhcC
Confidence 96 589999999999987 77778899999887653
No 52
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-48 Score=312.01 Aligned_cols=190 Identities=32% Similarity=0.435 Sum_probs=161.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccC----
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM---- 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~---- 70 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+||.||+.+......
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 111 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWR 111 (241)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhh
Confidence 59999999999999999998 7999999999987532 234568999999999999999999987532110
Q ss_pred -CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 71 -DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 71 -~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
..........+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 191 (241)
T cd03256 112 SLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRIN 191 (241)
T ss_pred hhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 0000112234567889999999988899999999999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++ +.|||++||++. .+..+||++++|++ |+++..|+++++.+
T Consensus 192 ~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~ 234 (241)
T cd03256 192 REEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPAELTD 234 (241)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHHHhhH
Confidence 64 899999999975 68889999999987 88888898887643
No 53
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-48 Score=315.08 Aligned_cols=187 Identities=26% Similarity=0.384 Sum_probs=162.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---c----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---V----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... . .++.++|++|++.+++.+||.||+.+......
T Consensus 56 ~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--- 131 (269)
T cd03294 56 MGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG--- 131 (269)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC---
Confidence 69999999999999999998 7999999999987531 1 13469999999999999999999988654321
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ |
T Consensus 132 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 211 (269)
T cd03294 132 VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 112233456888999999998899999999999999999999999999999999999999999999999999999754 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|+|++||+.. .+..+||++++|++ |+++..|+++++++
T Consensus 212 ~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 250 (269)
T cd03294 212 KTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPEEILT 250 (269)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHHh
Confidence 99999999974 68899999999987 88888899888754
No 54
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3e-48 Score=307.54 Aligned_cols=179 Identities=28% Similarity=0.453 Sum_probs=156.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+|+||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|++|++.+++.+||.||+.+....+. .....
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~ 112 (218)
T cd03266 37 LGPNGAGKTTTLRMLAGLLE-PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDE 112 (218)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHH
Confidence 59999999999999999988 799999999998753 2345679999999999999999999987654321 12233
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus 113 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 192 (218)
T cd03266 113 LTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192 (218)
T ss_pred HHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 45678899999999988999999999999999999999999999999999999999999999999999998778999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
||+.. .+..+||++++|++ |+++..
T Consensus 193 tH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (218)
T cd03266 193 THIMQ-EVERLCDRVVVLHR-GRVVYE 217 (218)
T ss_pred eCCHH-HHHHhcCEEEEEEC-CEEeec
Confidence 99974 78899999999987 887654
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-48 Score=317.99 Aligned_cols=187 Identities=28% Similarity=0.419 Sum_probs=160.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... ..++.+||+||++. .+..+||+||+.|...... .
T Consensus 39 ~G~nGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~ 114 (287)
T PRK13637 39 IGHTGSGKSTLIQHLNGLLK-PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG---L 114 (287)
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC---C
Confidence 59999999999999999998 7999999999998531 33567999999973 3335799999998654321 2
Q ss_pred cHHHHHHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235 75 TWLELNKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE- 151 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~- 151 (197)
...+..+++.++++.+||. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++++++
T Consensus 115 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~ 194 (287)
T PRK13637 115 SEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhc
Confidence 2334556788999999997 6789999999999999999999999999999999999999999999999999999865
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.|||++||+.. ++..+||++++|++ |++++.|+++++++
T Consensus 195 g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~ 234 (287)
T PRK13637 195 NMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTPREVFK 234 (287)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 899999999974 67889999999987 89989999988754
No 56
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.1e-48 Score=326.56 Aligned_cols=185 Identities=31% Similarity=0.437 Sum_probs=163.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... ..++.++|+||++.+|+.+||.||+.|+.....
T Consensus 29 ~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~--- 104 (354)
T TIGR02142 29 FGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR--- 104 (354)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC---
Confidence 59999999999999999998 7999999999987421 234679999999999999999999998654211
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
.....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +
T Consensus 105 --~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g 182 (354)
T TIGR02142 105 --PSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG 182 (354)
T ss_pred --hhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence 1223456889999999999999999999999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|+|++||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 183 ~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 183 IPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIAEVWA 221 (354)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHHHHhc
Confidence 89999999974 78899999999987 89989999988764
No 57
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.4e-48 Score=309.56 Aligned_cols=188 Identities=28% Similarity=0.452 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... .+++.++|++|++.+++.+||.||+.+...... ...
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~ 109 (240)
T PRK09493 33 IGPSGSGKSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GAS 109 (240)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCC
Confidence 59999999999999999988 7999999999987531 234579999999999999999999987542111 112
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.++|+++++++.|+
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 189 (240)
T PRK09493 110 KEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTM 189 (240)
T ss_pred HHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 23345678899999999988899999999999999999999999999999999999999999999999999998778999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. .+..+||++++|++ |++++.|+++++.+
T Consensus 190 ii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 225 (240)
T PRK09493 190 VIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDPQVLIK 225 (240)
T ss_pred EEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCHHHHhc
Confidence 99999975 67889999999987 89988898887653
No 58
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.6e-48 Score=307.05 Aligned_cols=174 Identities=32% Similarity=0.465 Sum_probs=151.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.... .++.++|++|++.+++.+||.||+.+......
T Consensus 36 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--- 111 (218)
T cd03255 36 VGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG--- 111 (218)
T ss_pred EcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---
Confidence 69999999999999999998 79999999999875321 23569999999999999999999998654321
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~ 152 (197)
.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++ ++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~ 191 (218)
T cd03255 112 VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG 191 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 11223446788999999999888999999999999999999999999999999999999999999999999999987 58
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
.|+|++||+.. .+. .||++++|++ |+
T Consensus 192 ~tii~~sH~~~-~~~-~~d~v~~l~~-G~ 217 (218)
T cd03255 192 TTIVVVTHDPE-LAE-YADRIIELRD-GK 217 (218)
T ss_pred CeEEEEECCHH-HHh-hhcEEEEeeC-Cc
Confidence 99999999975 565 9999999987 64
No 59
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-48 Score=320.39 Aligned_cols=187 Identities=26% Similarity=0.339 Sum_probs=159.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---------------------------ccccceEEEEecCC-CC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---------------------------TVMSRISGYVAQQD-FL 52 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---------------------------~~~~~~~~~v~q~~-~~ 52 (197)
+||||||||||+++|+|+++ |++|+|+++|.+... ..+++.+||+||++ ..
T Consensus 39 iG~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~ 117 (305)
T PRK13651 39 IGQTGSGKTTFIEHLNALLL-PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQ 117 (305)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccc
Confidence 69999999999999999998 799999999876421 12356799999985 23
Q ss_pred CCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy4235 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT 131 (197)
Q Consensus 53 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts 131 (197)
+...||.||+.|+..... .......+++.++++.+||. +..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 118 l~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~ 194 (305)
T PRK13651 118 LFEQTIEKDIIFGPVSMG---VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTA 194 (305)
T ss_pred cccccHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 345699999998654321 22334556789999999996 68899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 132 GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 132 ~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+||+.++..+.++|++++++|.|||++||+.. .+.++|||+++|++ |++++.|++++++.
T Consensus 195 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g~~~~~~~ 254 (305)
T PRK13651 195 GLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDGDTYDILS 254 (305)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence 99999999999999999877999999999974 78899999999987 88999999988754
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.6e-48 Score=305.95 Aligned_cols=184 Identities=30% Similarity=0.500 Sum_probs=160.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... .+++.++|++|++.+++.+|+.||+.+...... .....
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~ 109 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSE 109 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHH
Confidence 59999999999999999998 7999999999987532 334569999999999999999999988654322 11223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++
T Consensus 110 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~ 188 (220)
T cd03263 110 IKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILT 188 (220)
T ss_pred HHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 345788999999999888999999999999999999999999999999999999999999999999999876 5899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
||++. .+..+||++++|++ |+++..|+++++
T Consensus 189 sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 219 (220)
T cd03263 189 THSMD-EAEALCDRIAIMSD-GKLRCIGSPQEL 219 (220)
T ss_pred cCCHH-HHHHhcCEEEEEEC-CEEEecCCHHHc
Confidence 99975 67889999999987 888888888764
No 61
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-48 Score=304.71 Aligned_cols=178 Identities=26% Similarity=0.434 Sum_probs=155.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..++.++|++|++.+++.+|+.||+.+...... .......
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~ 106 (210)
T cd03269 32 LGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEAR 106 (210)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHH
Confidence 59999999999999999988 799999999998754 345678999999999999999999988654321 1122345
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++||
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH 186 (210)
T cd03269 107 RRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186 (210)
T ss_pred HHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 67889999999998889999999999999999999999999999999999999999999999999999877889999999
Q ss_pred CCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
+.. .+.++||++++|.+ |++++.
T Consensus 187 ~~~-~~~~~~d~i~~l~~-g~i~~~ 209 (210)
T cd03269 187 QME-LVEELCDRVLLLNK-GRAVLY 209 (210)
T ss_pred CHH-HHHHhhhEEEEEeC-CEEEec
Confidence 974 67889999999987 887654
No 62
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.9e-48 Score=311.52 Aligned_cols=188 Identities=31% Similarity=0.430 Sum_probs=159.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccC----
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM---- 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~---- 70 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+++.++|+||++.+++.+||.||+.+......
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 112 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRLVE-PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWR 112 (243)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchh
Confidence 69999999999999999998 7999999999987531 134669999999999999999999986432100
Q ss_pred -CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 71 -DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 71 -~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
..........+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 192 (243)
T TIGR02315 113 SLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN 192 (243)
T ss_pred hhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0000112334678889999999988899999999999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
++ +.|+|++||+.. .+.++||++++|++ |+++..|+++++
T Consensus 193 ~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 233 (243)
T TIGR02315 193 KEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPSEL 233 (243)
T ss_pred HHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHHHh
Confidence 64 889999999975 67889999999987 888888988775
No 63
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1e-47 Score=313.73 Aligned_cols=188 Identities=26% Similarity=0.399 Sum_probs=162.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|+++|+++... ..++.++|++|++.+++.+||.||+.+...... ..
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~ 115 (269)
T PRK11831 39 MGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QL 115 (269)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CC
Confidence 69999999999999999998 7999999999987531 124568999999999999999999988643211 11
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
........+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++ +.
T Consensus 116 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 195 (269)
T PRK11831 116 PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV 195 (269)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc
Confidence 22233456788999999998899999999999999999999999999999999999999999999999999999765 88
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|+|++||+.. .+..+||++++|++ |++++.|+++++.+
T Consensus 196 tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 233 (269)
T PRK11831 196 TCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSAQALQA 233 (269)
T ss_pred EEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCHHHHhc
Confidence 9999999974 78899999999987 89988999887754
No 64
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1e-47 Score=321.73 Aligned_cols=189 Identities=26% Similarity=0.313 Sum_probs=163.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+|+||||||||+++|+|+++ |++|+|+++|+++... .+++.++||||++ .++|.+||.+|+.+....+..
T Consensus 53 vG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~- 130 (331)
T PRK15079 53 VGESGCGKSTFARAIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP- 130 (331)
T ss_pred ECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-
Confidence 69999999999999999998 7999999999998532 2345799999997 588899999999986543211
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.....+..+.+.++++.+++. +..++++.+|||||+||++|||||+.+|++||+||||++||+.++.+++++|++++++
T Consensus 131 ~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 131 KLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred CCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 122334556788999999995 5789999999999999999999999999999999999999999999999999999865
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus 211 ~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~~~i~~ 251 (331)
T PRK15079 211 MGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTYDEVYH 251 (331)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHc
Confidence 899999999974 78889999999987 89999999988764
No 65
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-48 Score=325.81 Aligned_cols=181 Identities=28% Similarity=0.417 Sum_probs=161.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++.. ...++.++|+||++.+|+.+||+||+.+....
T Consensus 30 ~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----- 103 (352)
T PRK11144 30 FGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK----- 103 (352)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh-----
Confidence 59999999999999999998 799999999998742 12356799999999999999999999876421
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +
T Consensus 104 ----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g 179 (352)
T PRK11144 104 ----SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN 179 (352)
T ss_pred ----hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12356889999999999999999999999999999999999999999999999999999999999999999865 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|+|++||+.. ++..+||++++|++ |+++..|+++++..
T Consensus 180 ~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~i~~ 218 (352)
T PRK11144 180 IPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLEEVWA 218 (352)
T ss_pred CeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHHHHHh
Confidence 89999999974 78899999999987 89999999988764
No 66
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-47 Score=310.24 Aligned_cols=188 Identities=27% Similarity=0.382 Sum_probs=162.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----------cccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.++....
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (250)
T PRK11264 35 IGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV 113 (250)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh
Confidence 59999999999999999988 7999999999987421 23456899999999999999999998753211
Q ss_pred CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.. .......+.+.++++.+++....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++
T Consensus 114 ~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 191 (250)
T PRK11264 114 KG--EPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA 191 (250)
T ss_pred cC--CCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 11 1222344668889999999988899999999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++.++|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus 192 ~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 233 (250)
T PRK11264 192 QEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPAKALFA 233 (250)
T ss_pred hcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence 77899999999974 68889999999987 88888899887653
No 67
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=9.9e-48 Score=303.54 Aligned_cols=180 Identities=28% Similarity=0.392 Sum_probs=156.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+...... ......
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~ 107 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEI 107 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHH
Confidence 59999999999999999988 7999999999987532 223569999999999999999999988644321 122334
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ +.|+|++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~ 187 (213)
T cd03301 108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187 (213)
T ss_pred HHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 567888999999998899999999999999999999999999999999999999999999999999999864 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
||+.. .+..+||++++|++ |++++.|
T Consensus 188 sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 188 THDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred eCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99974 78889999999987 8887654
No 68
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.6e-48 Score=304.58 Aligned_cols=172 Identities=35% Similarity=0.435 Sum_probs=149.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.....++.++|++|++. .++.+|+.||+.++..... ..
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~-------~~ 103 (205)
T cd03226 32 TGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD-------AG 103 (205)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC-------cc
Confidence 59999999999999999998 799999999998754344567999999974 3445799999987643221 11
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
.+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.++|++|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 183 (205)
T cd03226 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVIT 183 (205)
T ss_pred HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 24678999999999999999999999999999999999999999999999999999999999999999977789999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEE
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLL 182 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i 182 (197)
|++. .+..+||++++|++ |++
T Consensus 184 H~~~-~~~~~~d~i~~l~~-G~i 204 (205)
T cd03226 184 HDYE-FLAKVCDRVLLLAN-GAI 204 (205)
T ss_pred CCHH-HHHHhCCEEEEEEC-CEE
Confidence 9974 67889999999987 765
No 69
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.3e-48 Score=305.97 Aligned_cols=185 Identities=27% Similarity=0.390 Sum_probs=159.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .++.++|+||++.+++.+|+.||+.++..... .
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~ 105 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----R 105 (222)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----c
Confidence 69999999999999999998 79999999999875321 23569999999999999999999988654321 1
Q ss_pred HHHHHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 77 LELNKTITRVMENL-GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
....+.+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.|+
T Consensus 106 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 185 (222)
T cd03224 106 AKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTI 185 (222)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 12334567788888 57778899999999999999999999999999999999999999999999999999998778999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||++. .+..+||++++|++ |+++..|+++++.+
T Consensus 186 ii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 221 (222)
T cd03224 186 LLVEQNAR-FALEIADRAYVLER-GRVVLEGTAAELLA 221 (222)
T ss_pred EEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCHHHHhc
Confidence 99999974 68899999999987 89988898887653
No 70
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.1e-47 Score=325.64 Aligned_cols=187 Identities=24% Similarity=0.360 Sum_probs=163.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe----eCCc---cc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC----PISR---TV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~----~~~~---~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
+||||||||||+|+|+|+++ |++|+|+++|+ ++.. .. . ++.++|+||++.+++.+||.||+.++....
T Consensus 56 ~G~nGsGKSTLlr~L~Gl~~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~ 134 (382)
T TIGR03415 56 MGLSGSGKSSLLRAVNGLNP-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ 134 (382)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc
Confidence 69999999999999999998 79999999996 3322 11 1 246999999999999999999999875432
Q ss_pred CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
. .......+.+.++++.+||.+..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++++
T Consensus 135 g---~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 135 G---MPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred C---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 1 1233445678999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++ ++|+|++||+.. ++.++||++++|++ |+++..|+++++..
T Consensus 212 ~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 212 AKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPEEIVL 254 (382)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhh
Confidence 75 899999999975 78899999999988 88999999988753
No 71
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-47 Score=308.93 Aligned_cols=186 Identities=27% Similarity=0.449 Sum_probs=161.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+||.||+.++..... ....
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~ 108 (242)
T cd03295 33 IGPSGSGKTTTMKMINRLIE-PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKE 108 (242)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHH
Confidence 59999999999999999988 7999999999987532 234578999999999999999999988654321 1223
Q ss_pred HHHHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 78 ELNKTITRVMENLGINH--RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
...+.+.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.+
T Consensus 109 ~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 188 (242)
T cd03295 109 KIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT 188 (242)
T ss_pred HHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 34567889999999985 789999999999999999999999999999999999999999999999999999865 899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+|++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus 189 vii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 224 (242)
T cd03295 189 IVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTPDEIL 224 (242)
T ss_pred EEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHH
Confidence 999999974 67899999999987 8888888887764
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.5e-48 Score=307.41 Aligned_cols=183 Identities=29% Similarity=0.417 Sum_probs=156.3
Q ss_pred CCCCCCcHHHHHHHHhcCc-----CCCceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRV-----KGLVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~-----~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+|+|+|++ + |++|+|.++|+++... .+++.++|++|++.++ .+||.||+.+......
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~ 109 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLNDLIPGA-PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG 109 (227)
T ss_pred ECCCCCCHHHHHHHHHhhcccccCC-CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC
Confidence 5999999999999999998 6 7999999999987431 2346799999999888 7899999988654321
Q ss_pred CccccHHHHHHHHHHHHHHcCCccccccc--CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGINHRRQVQ--ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
. .......+++.++++.+++.+..+++ +.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 110 ~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 187 (227)
T cd03260 110 I--KLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL 187 (227)
T ss_pred C--CcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 1 11112346788999999998777766 5999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
+++ .|+|++||+.. .+..+||++++|++ |++++.|++++
T Consensus 188 ~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (227)
T cd03260 188 KKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTEQ 226 (227)
T ss_pred hhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCccc
Confidence 877 89999999974 78889999999987 88888888765
No 73
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-48 Score=303.50 Aligned_cols=179 Identities=34% Similarity=0.507 Sum_probs=155.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+++.++|++|++.+++.+||.||+.+...... .....
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~ 106 (211)
T cd03264 31 LGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKE 106 (211)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHH
Confidence 59999999999999999998 7999999999887532 235678999999999999999999988654321 11223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++ +.|+|++
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~v 185 (211)
T cd03264 107 VKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILS 185 (211)
T ss_pred HHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 356788999999999888999999999999999999999999999999999999999999999999999976 5899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
||+.. .+.++||++++|++ |+++..|
T Consensus 186 sH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 186 THIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred cCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99974 67889999999987 8876543
No 74
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8e-48 Score=303.12 Aligned_cols=176 Identities=28% Similarity=0.438 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+.+ |++|+|.++|.++.. ...++.++|++|++.+++.+||.||+.++..... . .
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~ 103 (208)
T cd03268 32 LGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----R 103 (208)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----c
Confidence 59999999999999999998 799999999998753 2234568999999999999999999988654321 1 1
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
.+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.++|++|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~t 183 (208)
T cd03268 104 KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183 (208)
T ss_pred HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 34678899999999889999999999999999999999999999999999999999999999999999987789999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
|+.. .+..+||++++|++ |++++.|
T Consensus 184 H~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 184 HLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9974 67889999999987 8887643
No 75
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=315.33 Aligned_cols=186 Identities=28% Similarity=0.368 Sum_probs=160.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++.. ...++.+||+||++ .+++ .||.||+.|......
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~- 114 (288)
T PRK13643 38 IGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG- 114 (288)
T ss_pred ECCCCChHHHHHHHHhcCCC-CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC-
Confidence 59999999999999999998 799999999999742 12356799999986 5565 599999998754321
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
....+..+++.++++.++|. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++
T Consensus 115 --~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~ 192 (288)
T PRK13643 115 --IPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192 (288)
T ss_pred --CCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 12234456788999999996 578999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|.|||++||++. .+..+||++++|++ |++++.|++++++.
T Consensus 193 ~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~ 233 (288)
T PRK13643 193 SGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTPSDVFQ 233 (288)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHc
Confidence 7899999999974 68899999999987 99999999988754
No 76
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-47 Score=314.35 Aligned_cols=186 Identities=29% Similarity=0.380 Sum_probs=159.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++.. ...++.++|++|++ .++ .+||.||+.+......
T Consensus 39 iG~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~- 115 (287)
T PRK13641 39 VGHTGSGKSTLMQHFNALLK-PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFG- 115 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcC-
Confidence 69999999999999999998 799999999998742 12345699999997 345 5799999987643221
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.......+.+.++++.++|. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++++
T Consensus 116 --~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~ 193 (287)
T PRK13641 116 --FSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193 (287)
T ss_pred --CCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 12233456788999999997 678999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|.|+|++||+.. .+.++||++++|++ |+++..|+++++..
T Consensus 194 ~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 234 (287)
T PRK13641 194 AGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPKEIFS 234 (287)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 7899999999974 78899999999987 88988999887653
No 77
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=315.50 Aligned_cols=186 Identities=24% Similarity=0.328 Sum_probs=159.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...++.+||+||++ .++ ..||.||+.|......
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~- 115 (290)
T PRK13634 39 IGHTGSGKSTLLQHLNGLLQ-PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG- 115 (290)
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC-
Confidence 59999999999999999998 799999999998742 12345799999986 455 4699999998654321
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.......+.+.++++.++|. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++
T Consensus 116 --~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~ 193 (290)
T PRK13634 116 --VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK 193 (290)
T ss_pred --CCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 12334456788999999997 668999999999999999999999999999999999999999999999999999976
Q ss_pred C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+ |.|||++||+.. .+..+|||+++|++ |++++.|++++++.
T Consensus 194 ~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~ 235 (290)
T PRK13634 194 EKGLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTPREIFA 235 (290)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence 5 899999999975 78899999999987 99989999887653
No 78
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-47 Score=301.83 Aligned_cols=178 Identities=32% Similarity=0.396 Sum_probs=154.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.++|++|++.+++.+|+.+|+.+.....
T Consensus 29 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---- 103 (214)
T cd03297 29 FGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK---- 103 (214)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC----
Confidence 59999999999999999998 799999999998742 123456999999999999999999998764321
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ +
T Consensus 104 -~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (214)
T cd03297 104 -RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182 (214)
T ss_pred -CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 11223456889999999998889999999999999999999999999999999999999999999999999999765 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
.|+|++||+.. .+..+||++++|++ |+++..|
T Consensus 183 ~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 183 IPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred cEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 89999999974 67889999999987 8877654
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.7e-47 Score=302.35 Aligned_cols=173 Identities=29% Similarity=0.442 Sum_probs=151.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+++.++|++|++.+++.+|+.||+.+...... .
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~ 109 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---K 109 (214)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---C
Confidence 59999999999999999988 7999999999987531 234679999999999999999999998654321 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T TIGR02673 110 KEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189 (214)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 12234467889999999998889999999999999999999999999999999999999999999999999999777899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeC
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+|++||++. ++..+||++++|++
T Consensus 190 ii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 190 VIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred EEEEeCCHH-HHHHhcCEEEEecC
Confidence 999999974 78889999999986
No 80
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-47 Score=301.61 Aligned_cols=179 Identities=27% Similarity=0.387 Sum_probs=154.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+...... .. ....
T Consensus 30 ~G~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~ 105 (211)
T cd03298 30 VGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAED 105 (211)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHH
Confidence 59999999999999999998 7999999999987532 234569999999999999999999987543111 01 1233
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
++.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++++++ +.|+|++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 185 (211)
T cd03298 106 RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185 (211)
T ss_pred HHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 457889999999998899999999999999999999999999999999999999999999999999999764 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
||+.. .+.++||++++|++ |+++..
T Consensus 186 sH~~~-~~~~~~d~i~~l~~-G~i~~~ 210 (211)
T cd03298 186 THQPE-DAKRLAQRVVFLDN-GRIAAQ 210 (211)
T ss_pred ecCHH-HHHhhhCEEEEEEC-CEEeec
Confidence 99974 68899999999987 887654
No 81
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2e-47 Score=301.90 Aligned_cols=175 Identities=32% Similarity=0.448 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.++..... .
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~ 108 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---V 108 (214)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---C
Confidence 59999999999999999988 7999999999987531 234569999999999999999999998754321 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 188 (214)
T cd03292 109 PPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCE
Confidence 22334567889999999998889999999999999999999999999999999999999999999999999999777899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
+|++||+.. .+..+||++++|++ |+
T Consensus 189 iiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 189 VVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999974 67889999999987 64
No 82
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-47 Score=311.90 Aligned_cols=185 Identities=26% Similarity=0.309 Sum_probs=159.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... ..++.++|+||++. .++.+||.||+.|...... ...
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~ 112 (274)
T PRK13647 37 LGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG---LDK 112 (274)
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC---CCH
Confidence 59999999999999999998 7999999999988532 23456999999963 4456799999987643221 122
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+++++++.|||
T Consensus 113 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~til 192 (274)
T PRK13647 113 DEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVI 192 (274)
T ss_pred HHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 33456788999999999889999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
++||+.. .+.++||++++|++ |++++.|+++++
T Consensus 193 i~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~ 225 (274)
T PRK13647 193 VATHDVD-LAAEWADQVIVLKE-GRVLAEGDKSLL 225 (274)
T ss_pred EEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHh
Confidence 9999974 67889999999987 888888987643
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=305.91 Aligned_cols=188 Identities=25% Similarity=0.394 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .++.++|++|++.+++.+||.||+.+...... ....
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~ 111 (241)
T PRK10895 35 LGPNGAGKTTTFYMVVGIVP-RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSA 111 (241)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCH
Confidence 59999999999999999998 79999999999875321 34569999999999999999999987643221 1112
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
......+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.++++++++.|+|
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 191 (241)
T PRK10895 112 EQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191 (241)
T ss_pred HHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 23446788999999999888999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++||++. .+...||++++|++ |++++.|+++++..
T Consensus 192 i~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~ 226 (241)
T PRK10895 192 ITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPTEILQ 226 (241)
T ss_pred EEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHHHHhc
Confidence 9999974 68899999999987 88888999887643
No 84
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.8e-47 Score=304.67 Aligned_cols=185 Identities=26% Similarity=0.331 Sum_probs=157.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++..... ..+|++|++.+++.+||.||+.+....... ........
T Consensus 17 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~ 92 (230)
T TIGR01184 17 IGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLP-DLSKSERR 92 (230)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhccc-CCCHHHHH
Confidence 59999999999999999998 799999999998754222 248999999999999999999886421111 11223344
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t 159 (197)
+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ +.|+|++|
T Consensus 93 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~s 172 (230)
T TIGR01184 93 AIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT 172 (230)
T ss_pred HHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56889999999998899999999999999999999999999999999999999999999999999998765 88999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
|++. .+.++||++++|++ |+++..|++.++
T Consensus 173 H~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 202 (230)
T TIGR01184 173 HDVD-EALLLSDRVVMLTN-GPAANIGQILEV 202 (230)
T ss_pred CCHH-HHHHhcCEEEEEeC-CcEecccCceec
Confidence 9974 78899999999987 888777765443
No 85
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7e-47 Score=303.26 Aligned_cols=187 Identities=29% Similarity=0.433 Sum_probs=160.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ...+.++|++|++.+++.+|+.||+.+...... .....
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~ 108 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG---LSRAE 108 (236)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC---CCHHH
Confidence 59999999999999999998 7999999999987532 223568999999998889999999987654321 11223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii 157 (197)
..+.+.++++.+++.+..++++.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++ ++.|+|+
T Consensus 109 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii 188 (236)
T TIGR03864 109 ARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLW 188 (236)
T ss_pred HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345678899999999889999999999999999999999999999999999999999999999999999975 5899999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+||+.. .+. .||++++|++ |+++..|+++++...
T Consensus 189 ~sH~~~-~~~-~~d~i~~l~~-G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 189 ATHLVD-EIE-ADDRLVVLHR-GRVLADGAAAELRGA 222 (236)
T ss_pred EecChh-hHh-hCCEEEEEeC-CeEEEeCCHHHHHHH
Confidence 999985 555 5999999987 888888998877654
No 86
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=312.67 Aligned_cols=186 Identities=21% Similarity=0.322 Sum_probs=161.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... ..++.++|++|++ .+++.+||.||+.|...... ...
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~ 114 (279)
T PRK13650 39 IGHNGSGKSTTVRLIDGLLE-AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG---IPH 114 (279)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC---CCH
Confidence 59999999999999999998 7999999999998532 2446799999997 46777899999988643221 223
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.||
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 194 (279)
T PRK13650 115 EEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTV 194 (279)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 344567889999999999899999999999999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus 195 livtH~~~-~~-~~~dri~~l~~-G~i~~~g~~~~~~~ 229 (279)
T PRK13650 195 ISITHDLD-EV-ALSDRVLVMKN-GQVESTSTPRELFS 229 (279)
T ss_pred EEEecCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHc
Confidence 99999975 55 58999999987 89988999887653
No 87
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-47 Score=302.64 Aligned_cols=180 Identities=27% Similarity=0.443 Sum_probs=154.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++.... . ++.++|++|++.+++.+|+.||+.+......
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--- 116 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLDT-PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK--- 116 (233)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---
Confidence 59999999999999999988 79999999999875321 1 2569999999999999999999988654221
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~ 152 (197)
.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ +|
T Consensus 117 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 196 (233)
T PRK11629 117 KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 11223456788999999999888999999999999999999999999999999999999999999999999999975 58
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
.|+|++||+.. .+.. +|++++|++ |+++..++
T Consensus 197 ~tvii~sH~~~-~~~~-~~~~~~l~~-G~i~~~~~ 228 (233)
T PRK11629 197 TAFLVVTHDLQ-LAKR-MSRQLEMRD-GRLTAELS 228 (233)
T ss_pred CEEEEEeCCHH-HHHh-hCEEEEEEC-CEEEEEec
Confidence 99999999975 5554 679999987 88877654
No 88
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-47 Score=316.48 Aligned_cols=185 Identities=26% Similarity=0.374 Sum_probs=159.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------------------cccceEEEEecCC--CCCCCCCHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------------------VMSRISGYVAQQD--FLIEELTVL 59 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------------------~~~~~~~~v~q~~--~~~~~ltv~ 59 (197)
+|+||||||||+++|+|+++ |++|+|+++|.++... .+++.++|++|++ .+++. ||.
T Consensus 58 ~G~nGsGKSTLl~~L~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~ 135 (320)
T PRK13631 58 IGNSGSGKSTLVTHFNGLIK-SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIE 135 (320)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHH
Confidence 59999999999999999998 7999999999887421 2356799999987 46654 999
Q ss_pred HHHHHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA 138 (197)
Q Consensus 60 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~ 138 (197)
||+.|+..... .......+++.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 136 eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~ 212 (320)
T PRK13631 136 KDIMFGPVALG---VKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212 (320)
T ss_pred HHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 99988643221 12234456788999999996 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 139 NNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 139 ~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
..+.++|+++++++.|||++||++. .+..+||++++|++ |+++..|++++++
T Consensus 213 ~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~-G~i~~~g~~~~~~ 264 (320)
T PRK13631 213 HEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTGTPYEIF 264 (320)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999877899999999974 67899999999988 8999999998764
No 89
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-48 Score=309.83 Aligned_cols=181 Identities=29% Similarity=0.421 Sum_probs=164.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
.|+||||||||+|+|+|+.+ |++|.|.+||.-+.. ..-+|++|||||+..+||.+||+.|+.|+....
T Consensus 30 FG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~---- 104 (352)
T COG4148 30 FGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS---- 104 (352)
T ss_pred ecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc----
Confidence 39999999999999999999 799999999987632 123578999999999999999999999976422
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
.....+++++.+|+.+.++++|..|||||||||+|+|||+..|++|+||||.++||..-+.+++-.|..++++ .
T Consensus 105 -----~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~ 179 (352)
T COG4148 105 -----MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179 (352)
T ss_pred -----chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC
Confidence 2456889999999999999999999999999999999999999999999999999999999999999999977 7
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
..|+.+||.+. ++.+++|++++|++ |++.+.|..++++.
T Consensus 180 IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e~v~~ 218 (352)
T COG4148 180 IPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLEEVWG 218 (352)
T ss_pred CCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcHHHHhc
Confidence 79999999975 79999999999987 99999999998865
No 90
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.1e-47 Score=301.42 Aligned_cols=177 Identities=23% Similarity=0.378 Sum_probs=153.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+++.++|++|++.+++.+|+.||+.+...... .
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~ 109 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGIER-PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---A 109 (222)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---C
Confidence 59999999999999999998 7999999999987431 134678999999998889999999988653321 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.+
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (222)
T PRK10908 110 SGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189 (222)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence 22233456788999999998889999999999999999999999999999999999999999999999999999777899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLA 183 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~ 183 (197)
+|++||++. .+...||++++|++ |+++
T Consensus 190 iii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 190 VLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 999999974 78889999999987 7764
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.7e-47 Score=304.90 Aligned_cols=186 Identities=27% Similarity=0.453 Sum_probs=160.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc-----eeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~-----~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
+|+||||||||+|+|+|+++ |+ +|+|+++|+++.. ...++.++|+||++.+++ +|+.||+.+......
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~ 110 (247)
T TIGR00972 33 IGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG 110 (247)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC
Confidence 59999999999999999998 67 9999999998753 123467999999999888 899999998654321
Q ss_pred CccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
........+.+.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.++|+
T Consensus 111 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 188 (247)
T TIGR00972 111 --IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ 188 (247)
T ss_pred --CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 012233456788999999997 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++++ .|+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus 189 ~~~~~-~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 189 ELKKK-YTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPTEQIFT 232 (247)
T ss_pred HHHhc-CeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 99764 89999999974 68899999999997 88888999887753
No 92
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-47 Score=297.54 Aligned_cols=187 Identities=27% Similarity=0.395 Sum_probs=162.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+|+||||||||||+|+|+.+ +.+|+|.++|++++..+ .+.-++||||...+|+.|||.|||.++.......
T Consensus 35 lG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~---- 109 (237)
T COG0410 35 LGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK---- 109 (237)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc----
Confidence 69999999999999999998 68999999999997542 3456899999999999999999999876543211
Q ss_pred HHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 77 LELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
......++++.+.|. |.+..+++.++|||||||.++|||||+.+|++|+|||||.||-|.-.++|++.|++++++ |.|
T Consensus 110 ~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~t 189 (237)
T COG0410 110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMT 189 (237)
T ss_pred ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcE
Confidence 111122778888885 788999999999999999999999999999999999999999999999999999999976 668
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|+++.++. ..+.+++||.++|.+ |+++++|+.+++...
T Consensus 190 IlLVEQn~-~~Al~iaDr~yvle~-Griv~~G~~~eL~~~ 227 (237)
T COG0410 190 ILLVEQNA-RFALEIADRGYVLEN-GRIVLSGTAAELLAD 227 (237)
T ss_pred EEEEeccH-HHHHHhhCEEEEEeC-CEEEEecCHHHHhcC
Confidence 88887775 589999999999998 999999999987653
No 93
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.9e-47 Score=306.56 Aligned_cols=187 Identities=27% Similarity=0.378 Sum_probs=160.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------------ccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------------TVMSRISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
+|+||||||||+++|+|+++ |++|+|+++|.++.. ..+++.++|++|++.+++.+|++||+.+
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~ 115 (257)
T PRK10619 37 IGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 115 (257)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHH
Confidence 59999999999999999998 799999999988742 1234579999999999999999999987
Q ss_pred HHHccCCccccHHHHHHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4235 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN 143 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~ 143 (197)
+..... ........+++.++++.+++.+.. ++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+
T Consensus 116 ~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 193 (257)
T PRK10619 116 APIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR 193 (257)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 542111 112233456788999999998764 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 144 LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 144 ~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+|++++++|.++|++||++. .+..+||++++|++ |++++.|+++++.
T Consensus 194 ~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 240 (257)
T PRK10619 194 IMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHhh
Confidence 99999877899999999974 67889999999987 8888889888764
No 94
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-47 Score=302.95 Aligned_cols=187 Identities=27% Similarity=0.368 Sum_probs=161.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|+|.++|+++... ..++.++|+||++.+++.+|+.||+.+...... .. ....
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~ 106 (232)
T PRK10771 31 LGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQ 106 (232)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHH
Confidence 59999999999999999998 7999999999987532 223568999999999999999999987532111 01 1223
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+.+.++++.+++.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.++|++++++ +.|+|++
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~ 186 (232)
T PRK10771 107 REKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV 186 (232)
T ss_pred HHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 466889999999998899999999999999999999999999999999999999999999999999998764 8899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. .+.++||++++|++ |++++.|+++++..
T Consensus 187 sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~ 219 (232)
T PRK10771 187 SHSLE-DAARIAPRSLVVAD-GRIAWDGPTDELLS 219 (232)
T ss_pred ECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 99974 67889999999987 88888898877654
No 95
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-47 Score=312.18 Aligned_cols=186 Identities=27% Similarity=0.386 Sum_probs=159.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... ..++.+||+||++ .+++ .||.||+.|......
T Consensus 39 ~G~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~- 115 (286)
T PRK13646 39 VGQTGSGKSTLIQNINALLK-PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK- 115 (286)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC-
Confidence 59999999999999999998 7999999999987431 2456799999986 4555 499999998653321
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.......+.+.++++.+||. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++++
T Consensus 116 --~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~ 193 (286)
T PRK13646 116 --MNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193 (286)
T ss_pred --CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 12334456788999999997 678899999999999999999999999999999999999999999999999999976
Q ss_pred C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+ |.|||++||+.. .+..+||++++|++ |++++.|++++++.
T Consensus 194 ~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~ 235 (286)
T PRK13646 194 DENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSPKELFK 235 (286)
T ss_pred hCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 4 899999999974 67889999999987 89989999987654
No 96
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.1e-47 Score=300.57 Aligned_cols=176 Identities=29% Similarity=0.434 Sum_probs=152.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.++..... ...
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~ 108 (213)
T cd03262 32 IGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMS 108 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCC
Confidence 59999999999999999998 799999999998742 1235679999999999999999999988643111 111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++++.|+
T Consensus 109 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tv 188 (213)
T cd03262 109 KAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTM 188 (213)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 22344678889999999988999999999999999999999999999999999999999999999999999998778899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
|++||++. .+.++||++++|++ |+
T Consensus 189 i~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 189 VVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999974 68899999999987 64
No 97
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-47 Score=306.32 Aligned_cols=189 Identities=27% Similarity=0.343 Sum_probs=160.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccC------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTM------ 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~------ 70 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .+..++|+||++.+++.+||.||+.+......
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 115 (255)
T PRK11300 37 IGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFS 115 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhh
Confidence 59999999999999999988 79999999999875321 22348999999999999999999998532110
Q ss_pred ----Cc--cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 71 ----DR--RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 71 ----~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
.. ........+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 195 (255)
T PRK11300 116 GLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL 195 (255)
T ss_pred hhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence 00 001112335678899999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
|++++++ +.|||++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus 196 L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 242 (255)
T PRK11300 196 IAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTPEEIR 242 (255)
T ss_pred HHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCHHHHh
Confidence 9999875 889999999974 78899999999987 8888889888764
No 98
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.2e-46 Score=300.19 Aligned_cols=185 Identities=42% Similarity=0.689 Sum_probs=155.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|++++ |++|+|.++|.++....+++.++|++|++.+++.+||.||+.+..............
T Consensus 39 ~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 118 (226)
T cd03234 39 LGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI 118 (226)
T ss_pred ECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHH
Confidence 599999999999999999862 589999999998865445677999999999999999999999865432111111112
Q ss_pred HHHHHHH-HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 79 LNKTITR-VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 79 ~~~~~~~-~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
....+.+ +++.+++.+..++.+.+||+||+||++|||||+.+|++|||||||+|||+.++..+.++|+++++++.|+|+
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii 198 (226)
T cd03234 119 RKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVIL 198 (226)
T ss_pred HHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 2234555 899999988889999999999999999999999999999999999999999999999999999877889999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
+||+..+.+.++||++++|++ |++++.|
T Consensus 199 ~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 199 TIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred EecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999973368899999999987 8887654
No 99
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.7e-47 Score=299.84 Aligned_cols=173 Identities=32% Similarity=0.441 Sum_probs=149.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.++|++|++. .++.+|+.||+.+...... ...
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~---~~~ 108 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG---LPE 108 (211)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC---CCH
Confidence 59999999999999999998 7999999999987532 23467899999975 3667899999987643221 112
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.++|
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi 188 (211)
T cd03225 109 EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTII 188 (211)
T ss_pred HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 23345688899999999888999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeC
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~ 178 (197)
++||+.. .+..+||++++|++
T Consensus 189 ~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 189 IVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred EEeCCHH-HHHHhCCEEEEEeC
Confidence 9999974 78888999999987
No 100
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-47 Score=303.95 Aligned_cols=186 Identities=27% Similarity=0.337 Sum_probs=159.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---------ccccceEEEEecCCCCCCCCCHHHHHHHHH-HccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---------TVMSRISGYVAQQDFLIEELTVLEHLQFMA-KLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~-~~~~ 70 (197)
+||||||||||+|+|+|+.+ |++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.++. ....
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~ 112 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG 112 (242)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcC
Confidence 59999999999999999988 799999999998631 123456899999999999999999997532 2111
Q ss_pred CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.......+.+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|+++++
T Consensus 113 ---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~ 189 (242)
T PRK11124 113 ---LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE 189 (242)
T ss_pred ---CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH
Confidence 11223345788999999999889999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++.|+|++||+.. .+..+||++++|.+ |++++.|+++++.
T Consensus 190 ~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 229 (242)
T PRK11124 190 TGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDASCFT 229 (242)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHhc
Confidence 7899999999974 67789999999987 8888889887753
No 101
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=315.03 Aligned_cols=188 Identities=23% Similarity=0.289 Sum_probs=163.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+|+||||||||+++|+|+++ |++|+|.++|+++... .+++.++||||++ .+++.+|+.+++.+....+.
T Consensus 47 vG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~-- 123 (327)
T PRK11308 47 VGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-- 123 (327)
T ss_pred ECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--
Confidence 69999999999999999998 7999999999998532 2345799999997 58899999999987654331
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
........+++.++++.+||. ...++++.+||||||||++|||||+.+|++||+||||++||+.++.+++++|++++++
T Consensus 124 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~ 203 (327)
T PRK11308 124 SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE 203 (327)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 112334556789999999996 4679999999999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|.|+|++|||.. .+.++||++++|.+ |++++.|+++++++
T Consensus 204 ~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~~~~~~ 244 (327)
T PRK11308 204 LGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTKEQIFN 244 (327)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence 899999999974 77889999999987 99999999988765
No 102
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-46 Score=302.84 Aligned_cols=188 Identities=26% Similarity=0.388 Sum_probs=160.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-----
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD----- 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~----- 71 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .++.++|++|++.+++.+||.||+.++......
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~ 112 (242)
T TIGR03411 34 IGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASL 112 (242)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccccccc
Confidence 59999999999999999988 79999999999875321 234699999999999999999999886432100
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.........+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|+++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~- 191 (242)
T TIGR03411 113 FFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG- 191 (242)
T ss_pred ccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-
Confidence 0011123456788999999999888999999999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+.|+|++||+.. .+.++||++++|++ |+++..|+++++.
T Consensus 192 ~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~~~~ 230 (242)
T TIGR03411 192 KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLDQVQ 230 (242)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHHHHh
Confidence 689999999974 68889999999987 8888889888764
No 103
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-47 Score=303.15 Aligned_cols=184 Identities=23% Similarity=0.368 Sum_probs=158.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .++.++|++|++.+++.+||.||+.+..... ..
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~ 110 (237)
T PRK11614 37 IGANGAGKTTLLGTLCGDPR-ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ER 110 (237)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----Ch
Confidence 59999999999999999998 79999999999875421 3456999999999999999999998754211 11
Q ss_pred HHHHHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 77 LELNKTITRVMENL-GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
....+.+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.|+
T Consensus 111 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 190 (237)
T PRK11614 111 DQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 12334567778887 57777788999999999999999999999999999999999999999999999999998778999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
|++||++. ++.++||++++|++ |++++.|+++++.
T Consensus 191 ii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 225 (237)
T PRK11614 191 FLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGDALL 225 (237)
T ss_pred EEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHHHHh
Confidence 99999974 78899999999987 8999999998775
No 104
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.8e-47 Score=299.67 Aligned_cols=176 Identities=30% Similarity=0.474 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------cc-ceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------MS-RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+++ |++|+|+++|.++.... ++ +.++|++|++.+++.+|++||+.+......
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--- 112 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGLDN-PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK--- 112 (221)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---
Confidence 69999999999999999998 79999999999875321 12 568999999999999999999988643221
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++ +
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 192 (221)
T TIGR02211 113 KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192 (221)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 112233456789999999998899999999999999999999999999999999999999999999999999999764 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLA 183 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~ 183 (197)
.|+|++||+.. .+ ..||++++|++ |+++
T Consensus 193 ~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 193 TSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 89999999975 55 45899999987 7764
No 105
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.1e-46 Score=300.30 Aligned_cols=182 Identities=25% Similarity=0.340 Sum_probs=151.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||||||||+++|+|+++ |++|+|.++|+++... .+++.++|++|++ .+++.+||++|+.+........
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~ 115 (228)
T cd03257 37 VGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL 115 (228)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC
Confidence 59999999999999999988 7999999999987532 2346799999998 5677899999998764432111
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.........+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++
T Consensus 116 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (228)
T cd03257 116 -SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE 194 (228)
T ss_pred -cHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11111122235789999995 6789999999999999999999999999999999999999999999999999999876
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
+.|||++||+.. .+..+||++++|++ |+++..|
T Consensus 195 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 195 LGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred cCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 899999999974 67789999999987 8876543
No 106
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=304.90 Aligned_cols=180 Identities=27% Similarity=0.378 Sum_probs=155.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... ...++|++|++.+++.+||.||+.+...... .......
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~ 106 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRL 106 (255)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHH
Confidence 59999999999999999998 7999999999987532 2458999999999998999999987643221 1222334
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++ ++.|+|++|
T Consensus 107 ~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs 186 (255)
T PRK11248 107 EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT 186 (255)
T ss_pred HHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6788999999999888999999999999999999999999999999999999999999999999999854 589999999
Q ss_pred cCCcchHHhhcCeEEEEeC-CcEEEEecC
Q psy4235 160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQ 187 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~ 187 (197)
|++. .+..+||++++|++ +|+++..++
T Consensus 187 H~~~-~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 187 HDIE-EAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred CCHH-HHHHhCCEEEEEeCCCcEEEEEec
Confidence 9974 78899999999984 488877654
No 107
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=308.87 Aligned_cols=186 Identities=28% Similarity=0.359 Sum_probs=158.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|++|++ .+++ .||.||+.+......
T Consensus 39 ~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~- 115 (280)
T PRK13649 39 IGHTGSGKSTIMQLLNGLHV-PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFG- 115 (280)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcC-
Confidence 59999999999999999998 799999999998743 12345689999996 4555 699999987643221
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.......+.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++
T Consensus 116 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (280)
T PRK13649 116 --VSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193 (280)
T ss_pred --CCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 12223445678899999997 467999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++.|||++||++. .+..+||++++|++ |+++..|+++++..
T Consensus 194 ~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 234 (280)
T PRK13649 194 SGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPKDIFQ 234 (280)
T ss_pred CCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 7899999999974 78899999999987 88888898887644
No 108
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.5e-47 Score=299.88 Aligned_cols=177 Identities=29% Similarity=0.428 Sum_probs=149.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHccCC-ccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLTMD-RRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|+++. ..++.++|++|++.++ +.+||.||+.+....... ......
T Consensus 31 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (213)
T cd03235 31 VGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSK 107 (213)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCH
Confidence 59999999999999999988 79999999998764 2456799999998763 347999999875432110 000112
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|+
T Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 187 (213)
T cd03235 108 ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILV 187 (213)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 33467889999999998889999999999999999999999999999999999999999999999999999877899999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEE
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLL 182 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i 182 (197)
+||+.. .+.++||++++|++ |.+
T Consensus 188 ~sH~~~-~~~~~~d~i~~l~~-~~~ 210 (213)
T cd03235 188 VTHDLG-LVLEYFDRVLLLNR-TVV 210 (213)
T ss_pred EeCCHH-HHHHhcCEEEEEcC-cEe
Confidence 999974 68899999999976 644
No 109
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.5e-46 Score=297.06 Aligned_cols=181 Identities=27% Similarity=0.365 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+|+.||+.+....... .....
T Consensus 30 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~---~~~~~ 105 (213)
T TIGR01277 30 MGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK---LNAEQ 105 (213)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC---ccHHH
Confidence 59999999999999999998 7999999999987532 3456799999999999999999999875432111 11123
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||++||+.++..+.++|++++++ +.|+|++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~v 185 (213)
T TIGR01277 106 QEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185 (213)
T ss_pred HHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788999999998899999999999999999999999999999999999999999999999999999765 8899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
||+.. .+.++||++++|++ |+++..|+
T Consensus 186 sh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 186 THHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred eCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 99974 67889999999987 88887764
No 110
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.9e-46 Score=303.45 Aligned_cols=188 Identities=26% Similarity=0.393 Sum_probs=161.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----------------cccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----------------VMSRISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----------------~~~~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... .+++.++|++|++.+++.+|+.||+.+
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~ 110 (252)
T TIGR03005 32 IGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE 110 (252)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHH
Confidence 59999999999999999998 7999999999987421 234679999999999999999999987
Q ss_pred HHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
...... ........+.+.++++.+++.+..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.
T Consensus 111 ~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 188 (252)
T TIGR03005 111 APVLVL--GMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188 (252)
T ss_pred HHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 532111 111223445688999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++++++ +.|+|++||++. .+..+||++++|++ |++++.|+++++..
T Consensus 189 l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 189 IRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKPDEIFR 236 (252)
T ss_pred HHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence 9999765 899999999975 67889999999987 89988898887653
No 111
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=289.05 Aligned_cols=188 Identities=28% Similarity=0.367 Sum_probs=165.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------c------cccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------T------VMSRISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------~------~~~~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
||.|||||||+||||+-+.. |+.|.|+++|+.+.. . .++.+.++|||+.+++..|||.||+..
T Consensus 38 IGsSGSGKSTfLRCiN~LE~-P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViE 116 (256)
T COG4598 38 IGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE 116 (256)
T ss_pred ecCCCCchhHHHHHHHhhcC-CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHh
Confidence 69999999999999987766 799999999998731 0 123457999999999999999999986
Q ss_pred HHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
....- ...+..+..+++..+|..+|+.+..+.+|..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.
T Consensus 117 aPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv 194 (256)
T COG4598 117 APVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKV 194 (256)
T ss_pred cchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHH
Confidence 53211 1223455677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 145 LKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 145 l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++++++|+|.+++||.+ .++...+..++++++ |.|.++|+|++++.
T Consensus 195 ~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~-G~iEE~G~P~qvf~ 241 (256)
T COG4598 195 MQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQ-GKIEEEGPPEQVFG 241 (256)
T ss_pred HHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeec-ceecccCChHHHhc
Confidence 999999999999999997 589999999999987 99999999998874
No 112
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=302.24 Aligned_cols=188 Identities=29% Similarity=0.418 Sum_probs=159.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|++++ |++|+|.++|.++.. ..+++.++|++|++.+++.+||.||+.+....... .
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~ 113 (250)
T PRK14247 35 MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-V 113 (250)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-c
Confidence 599999999999999999873 379999999998753 23456799999999889999999999886532211 0
Q ss_pred ccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 74 TTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14247 114 KSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK 193 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 11233456788999999985 35788999999999999999999999999999999999999999999999999986
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+ +.|+|++||++. .+..+||++++|++ |+++..|+++++.
T Consensus 194 ~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 233 (250)
T PRK14247 194 K-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPTREVF 233 (250)
T ss_pred c-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCHHHHH
Confidence 4 789999999974 67889999999987 8898889988765
No 113
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-46 Score=312.84 Aligned_cols=189 Identities=22% Similarity=0.291 Sum_probs=161.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC---CceeEEEECCeeCCcc---c----ccceEEEEecCC--CCCCCCCHHHHHHHHHHc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG---LVQGEILLNGCPISRT---V----MSRISGYVAQQD--FLIEELTVLEHLQFMAKL 68 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~---~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~ 68 (197)
+|+||||||||+++|+|++++ +++|+|.++|+++... . .++.++|+||++ .++|.+|+.+++......
T Consensus 39 vG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~ 118 (326)
T PRK11022 39 VGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV 118 (326)
T ss_pred ECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH
Confidence 699999999999999999873 3799999999997532 1 123699999997 578999999998776543
Q ss_pred cCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 69 TMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l 145 (197)
+.. ....+..+++.++++.++|.+ ..++++.+|||||||||+|||||+.+|++||+||||++||+.++.+++++|
T Consensus 119 ~~~--~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL 196 (326)
T PRK11022 119 HQG--GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL 196 (326)
T ss_pred hcC--CCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 211 123345677899999999963 568899999999999999999999999999999999999999999999999
Q ss_pred HHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 146 KQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 146 ~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++++ .|.|+|++|||.. .+.++||++++|.+ |++++.|++++++.
T Consensus 197 ~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~~~~~~ 243 (326)
T PRK11022 197 LELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKAHDIFR 243 (326)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhh
Confidence 99986 4899999999974 67889999999987 99999999988864
No 114
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-46 Score=307.27 Aligned_cols=187 Identities=29% Similarity=0.423 Sum_probs=160.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+|+||||||||+|+|+|+++ |++|+|+++|.++... ..++.++|++|++. .+...||.||+.+...... ...
T Consensus 36 ~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~ 111 (277)
T PRK13652 36 IGPNGAGKSTLFRHFNGILK-PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG---LDE 111 (277)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC---CCH
Confidence 59999999999999999998 7999999999987532 33457899999974 3445799999987643221 122
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.|+
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tv 191 (277)
T PRK13652 112 ETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191 (277)
T ss_pred HHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 334567889999999998899999999999999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||++. .+.+.||++++|++ |++++.|+++++++
T Consensus 192 li~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~ 227 (277)
T PRK13652 192 IFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVEEIFL 227 (277)
T ss_pred EEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHHHHhc
Confidence 99999974 67899999999987 88889999988754
No 115
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.3e-46 Score=299.31 Aligned_cols=187 Identities=26% Similarity=0.312 Sum_probs=159.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCcccc-cceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVM-SRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ | ++|+|+++|+++..... ++.++|++|++. +++.+|+.+|+.+.......
T Consensus 18 ~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~-- 94 (230)
T TIGR02770 18 VGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGK-- 94 (230)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCc--
Confidence 59999999999999999998 6 89999999998854333 356999999984 56778999999875432211
Q ss_pred ccHHHHHHHHHHHHHHcCCc---ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 74 TTWLELNKTITRVMENLGIN---HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 95 -~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 95 -LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173 (230)
T ss_pred -cHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 1123346788999999997 567899999999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+ +.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 174 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 174 LFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTVKEIFY 215 (230)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 4 889999999974 78889999999987 89988999988753
No 116
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-46 Score=306.44 Aligned_cols=187 Identities=25% Similarity=0.387 Sum_probs=158.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCCC-CCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDFL-IEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... ..++.++|++|++.+ +...|+.+|+.+...... .
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~---~ 108 (271)
T PRK13638 33 VGANGCGKSTLFMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG---V 108 (271)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC---C
Confidence 59999999999999999998 7999999999987421 234569999999753 344589999987643321 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++++.|
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 188 (271)
T PRK13638 109 PEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188 (271)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 22233456788999999998889999999999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus 189 ii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 225 (271)
T PRK13638 189 VIISSHDID-LIYEISDAVYVLRQ-GQILTHGAPGEVFA 225 (271)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 999999974 67899999999987 88888999887653
No 117
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2e-46 Score=305.57 Aligned_cols=188 Identities=22% Similarity=0.274 Sum_probs=160.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... .+++.++|++|++ .+++.+||.||+.+......
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-- 119 (265)
T TIGR02769 43 LGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT-- 119 (265)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--
Confidence 59999999999999999998 7999999999987532 1345699999997 46778999999987543211
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
........+.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++
T Consensus 120 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (265)
T TIGR02769 120 SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199 (265)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 111223446788999999996 6789999999999999999999999999999999999999999999999999999865
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.|||++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 200 ~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 200 FGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVAQLLS 240 (265)
T ss_pred cCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHHHHcC
Confidence 899999999974 77889999999987 89999999988764
No 118
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-46 Score=308.67 Aligned_cols=187 Identities=30% Similarity=0.408 Sum_probs=160.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|+||++. .+...||.||+.+...... .
T Consensus 38 ~G~nGaGKSTLl~~i~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~ 113 (283)
T PRK13636 38 LGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK---L 113 (283)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC---C
Confidence 59999999999999999998 799999999998741 124567999999973 3345799999988643221 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
......+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ |.
T Consensus 114 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~ 193 (283)
T PRK13636 114 PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193 (283)
T ss_pred CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 22334567889999999999999999999999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+++||++. .+..+||++++|++ |++++.|+++++..
T Consensus 194 tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~ 231 (283)
T PRK13636 194 TIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPKEVFA 231 (283)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 9999999974 67789999999988 88999999988754
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=304.65 Aligned_cols=186 Identities=30% Similarity=0.392 Sum_probs=159.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... .+++.++|++|++.+++.+||.||+.+...... ....
T Consensus 34 ~G~nGsGKSTLl~~i~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~ 109 (258)
T PRK13548 34 LGPNGAGKSTLLRALSGELS-PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRA 109 (258)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcH
Confidence 59999999999999999988 7999999999987532 234568999999988888999999988643211 1112
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-h
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL------TEPQILFCDEPTTGLDSYSANNVVNLLKQLA-C 150 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~ 150 (197)
...+.+.++++.+++.+..++.+.+||||||||++|||||+ .+|++|||||||++||+.++..+.++|++++ +
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (258)
T PRK13548 110 EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189 (258)
T ss_pred HHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 23456788999999998899999999999999999999999 5999999999999999999999999999997 5
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++.|||++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus 190 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 229 (258)
T PRK13548 190 RGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPAEVL 229 (258)
T ss_pred cCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHHHHh
Confidence 6899999999974 68889999999987 8888888887764
No 120
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=307.21 Aligned_cols=186 Identities=27% Similarity=0.382 Sum_probs=159.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++.. ...++.++|++|++. .+...|+.||+.+...... ..
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~ 109 (274)
T PRK13644 34 IGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC---LP 109 (274)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcC---CC
Confidence 59999999999999999998 799999999998853 123467999999975 4666899999987653321 12
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.++++.+++.+..++++.+||+||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~ti 189 (274)
T PRK13644 110 PIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTI 189 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999998778999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. .+ ..||++++|++ |++++.|+++++..
T Consensus 190 l~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~ 224 (274)
T PRK13644 190 VYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPENVLS 224 (274)
T ss_pred EEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHHHHhc
Confidence 99999975 55 56999999987 88888899887643
No 121
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=307.95 Aligned_cols=186 Identities=25% Similarity=0.330 Sum_probs=160.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|+||++ .+++..||.||+.+...... ...
T Consensus 39 ~G~nGaGKSTLl~~i~G~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~---~~~ 114 (279)
T PRK13635 39 VGHNGSGKSTLAKLLNGLLL-PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG---VPR 114 (279)
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC---CCH
Confidence 59999999999999999998 7999999999998542 2346799999997 36777899999988654321 122
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ +.||
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~ti 194 (279)
T PRK13635 115 EEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITV 194 (279)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 344567899999999999999999999999999999999999999999999999999999999999999999876 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||++. .+. .||+++++++ |++++.|+++++..
T Consensus 195 livsH~~~-~~~-~~d~i~~l~~-G~i~~~g~~~~~~~ 229 (279)
T PRK13635 195 LSITHDLD-EAA-QADRVIVMNK-GEILEEGTPEEIFK 229 (279)
T ss_pred EEEecCHH-HHH-cCCEEEEEEC-CEEEEECCHHHHhc
Confidence 99999975 555 5999999987 88888999887653
No 122
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=304.64 Aligned_cols=189 Identities=28% Similarity=0.409 Sum_probs=160.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC-CccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM-DRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~ 76 (197)
+|+||||||||+++|+|+++ |++|+|.++|.++.. ...++.++|+||++.+++.+|+.||+.++..... ......
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~ 112 (255)
T PRK11231 34 IGPNGCGKSTLLKCFARLLT-PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS 112 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCC
Confidence 59999999999999999988 799999999998743 2234568999999998888999999987521100 000011
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+.+.++++.+++.+..++++.+|||||+||++||||++.+|++|||||||+|||+.++..+.+.|+++++++.|+|
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tii 192 (255)
T PRK11231 113 AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 22345678899999999889999999999999999999999999999999999999999999999999999977789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++||++. .+.++||++++|++ |+++..|+++++.
T Consensus 193 i~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 226 (255)
T PRK11231 193 TVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPEEVM 226 (255)
T ss_pred EEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHHHhc
Confidence 9999974 78899999999987 8888888887664
No 123
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=302.56 Aligned_cols=186 Identities=23% Similarity=0.393 Sum_probs=157.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+|+||||||||+++|+|+.++ |++|+|.++|.++... ..++.++|++|++.+++ +|+.||+.+......
T Consensus 44 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~- 121 (258)
T PRK14268 44 IGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG- 121 (258)
T ss_pred ECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-
Confidence 599999999999999999873 3799999999987421 23456999999998888 899999998653321
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus 122 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 199 (258)
T PRK14268 122 --ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199 (258)
T ss_pred --CCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 12223345678899999883 457889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus 200 l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 242 (258)
T PRK14268 200 LKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQTRQIFH 242 (258)
T ss_pred Hhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 864 789999999974 67889999999987 89999999988753
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.4e-46 Score=297.04 Aligned_cols=177 Identities=31% Similarity=0.431 Sum_probs=152.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+++ |++|+|.++|+++.... . ++.++|++|++.+++.+|+.||+.+......
T Consensus 42 ~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~--- 117 (228)
T PRK10584 42 IGESGSGKSTLLAILAGLDD-GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG--- 117 (228)
T ss_pred ECCCCCCHHHHHHHHHcCCC-CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---
Confidence 59999999999999999988 79999999999875321 1 2469999999999999999999987643221
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ +
T Consensus 118 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 197 (228)
T PRK10584 118 ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197 (228)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 112234567889999999998889999999999999999999999999999999999999999999999999999765 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY 184 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~ 184 (197)
.|||++||+.. .+ ..||++++|++ |++++
T Consensus 198 ~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 198 TTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 89999999975 55 55999999987 77754
No 125
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-46 Score=305.58 Aligned_cols=189 Identities=25% Similarity=0.335 Sum_probs=160.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.+....... .....
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 121 (265)
T PRK10575 43 IGHNGSGKSTLLKMLGRHQP-PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFG 121 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCC
Confidence 59999999999999999988 799999999998743 23345699999998888999999999875321100 00011
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++ +.++
T Consensus 122 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~ti 201 (265)
T PRK10575 122 AADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTV 201 (265)
T ss_pred HHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 223456889999999998889999999999999999999999999999999999999999999999999999765 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
|++||++. .+.++||++++|++ |+++..|+++++.
T Consensus 202 ii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~~~~ 236 (265)
T PRK10575 202 IAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPAELM 236 (265)
T ss_pred EEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHHHhc
Confidence 99999975 78899999999987 8888888887764
No 126
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-46 Score=311.67 Aligned_cols=191 Identities=16% Similarity=0.218 Sum_probs=159.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC---CceeEEEECCeeCCcc---c----ccceEEEEecCCC--CCCCCCHHHHHHHHHHc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG---LVQGEILLNGCPISRT---V----MSRISGYVAQQDF--LIEELTVLEHLQFMAKL 68 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~---~~~G~i~~~g~~~~~~---~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~ 68 (197)
+|+||||||||+++|+|+.++ +++|+|+|+|+++... . .++.++||||++. +++.+||.+++.+....
T Consensus 39 vG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~ 118 (330)
T PRK15093 39 VGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPG 118 (330)
T ss_pred ECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHh
Confidence 699999999999999999863 4799999999987532 1 1246999999975 67889999999864321
Q ss_pred cCCcc---ccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235 69 TMDRR---TTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV 142 (197)
Q Consensus 69 ~~~~~---~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~ 142 (197)
..... .......+.+.++++.++|.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~ 198 (330)
T PRK15093 119 WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF 198 (330)
T ss_pred hhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHH
Confidence 10000 011233467889999999974 468899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 143 NLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 143 ~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++|++++++ |.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus 199 ~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~~~i~~ 248 (330)
T PRK15093 199 RLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPSKELVT 248 (330)
T ss_pred HHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 999999875 899999999974 78899999999987 99999999988764
No 127
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-46 Score=304.66 Aligned_cols=186 Identities=24% Similarity=0.351 Sum_probs=159.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+.+ |++|+|+++|.++... .+++.++|++|++. .++.+||.||+.+...... ...
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~ 116 (271)
T PRK13632 41 LGHNGSGKSTISKILTGLLK-PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPP 116 (271)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC---CCH
Confidence 59999999999999999998 7999999999998532 34567999999974 6777899999988643221 122
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
......+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.++++|++++++ +.|+
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti 196 (271)
T PRK13632 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL 196 (271)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 334456889999999999999999999999999999999999999999999999999999999999999999866 4899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||++. .+ ..||++++|++ |+++..|+++++..
T Consensus 197 ii~sH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~ 231 (271)
T PRK13632 197 ISITHDMD-EA-ILADKVIVFSE-GKLIAQGKPKEILN 231 (271)
T ss_pred EEEEechh-HH-hhCCEEEEEEC-CEEEEecCHHHHhc
Confidence 99999985 55 47999999987 88888888877643
No 128
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-46 Score=305.21 Aligned_cols=187 Identities=30% Similarity=0.416 Sum_probs=160.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.++|++|++. .+..+||.||+.+...... .
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~---~ 109 (275)
T PRK13639 34 LGPNGAGKSTLFLHFNGILK-PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG---L 109 (275)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---C
Confidence 59999999999999999998 7999999999987421 23467999999963 3344699999987543211 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++++++.|
T Consensus 110 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~t 189 (275)
T PRK13639 110 SKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGIT 189 (275)
T ss_pred CHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 22334567889999999999999999999999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||++||+.. .+..+||++++|++ |+++..|++++++.
T Consensus 190 il~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 226 (275)
T PRK13639 190 IIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPKEVFS 226 (275)
T ss_pred EEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 999999974 67889999999988 88888999988753
No 129
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.7e-46 Score=311.12 Aligned_cols=188 Identities=26% Similarity=0.301 Sum_probs=160.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCcc---c---cc-ceEEEEecCC--CCCCCCCHHHHHHHHHHc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT---V---MS-RISGYVAQQD--FLIEELTVLEHLQFMAKL 68 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~~---~---~~-~~~~~v~q~~--~~~~~ltv~e~l~~~~~~ 68 (197)
+|+||||||||+++|+|+++ |+ +|+|.++|+++... . ++ +.++||||++ .++|.+|+.+++.+....
T Consensus 48 vG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~ 126 (330)
T PRK09473 48 VGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 126 (330)
T ss_pred ECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH
Confidence 69999999999999999998 54 99999999998532 1 12 4699999997 688999999999876543
Q ss_pred cCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 69 TMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l 145 (197)
+. .....+..+++.++++.++|.+ ..++++.+|||||+||++|||||+.+|++||+||||++||+.++..++++|
T Consensus 127 ~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL 204 (330)
T PRK09473 127 HK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL 204 (330)
T ss_pred hc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 31 1123344567889999999964 357899999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++++++ +.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus 205 ~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~~~i~~ 251 (330)
T PRK09473 205 NELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNARDVFY 251 (330)
T ss_pred HHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 999875 899999999975 67889999999987 99999999998864
No 130
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-46 Score=304.65 Aligned_cols=189 Identities=27% Similarity=0.363 Sum_probs=160.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|+++... ..++.++|+||++.+++.+|+.||+.+....... .....
T Consensus 39 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 117 (265)
T PRK10253 39 IGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR 117 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCC
Confidence 59999999999999999988 7999999999987532 2345689999999999989999999874211100 00011
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
......+.++++.+++.+..++++.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|++++++ +.|+
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~ti 197 (265)
T PRK10253 118 KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL 197 (265)
T ss_pred HHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 223456789999999998899999999999999999999999999999999999999999999999999999764 8899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
|++||++. .+.++||++++|++ |+++..|+++++.
T Consensus 198 ii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 232 (265)
T PRK10253 198 AAVLHDLN-QACRYASHLIALRE-GKIVAQGAPKEIV 232 (265)
T ss_pred EEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 99999974 78999999999987 8888889988764
No 131
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-46 Score=303.68 Aligned_cols=174 Identities=25% Similarity=0.359 Sum_probs=153.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++. .+++.++|++|++.+++.+||.||+.+... . ...
T Consensus 44 ~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~ 111 (257)
T PRK11247 44 VGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWR 111 (257)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHH
Confidence 59999999999999999998 79999999998763 234668999999999998999999987521 0 123
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
..+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++ .+.|+|++|
T Consensus 112 ~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 5678899999999889999999999999999999999999999999999999999999999999999865 488999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEecCh
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQV 188 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~ 188 (197)
|+.. .+..+||++++|++ |+++..++.
T Consensus 192 Hd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 192 HDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred CCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 9974 67889999999987 888776654
No 132
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-46 Score=330.57 Aligned_cols=189 Identities=20% Similarity=0.288 Sum_probs=161.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+|+|+|+++| |++|+|+++|.++.... .++.++|++|++.+++.+||.||+.++..........
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 116 (506)
T PRK13549 37 CGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMD 116 (506)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcC
Confidence 699999999999999999884 48999999999885322 2356999999999999999999998864322100112
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++++.++
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tv 196 (506)
T PRK13549 117 YDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIAC 196 (506)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 23344678899999999888999999999999999999999999999999999999999999999999999998778999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
|++||+.. .+..+||++++|++ |+++..|+++++
T Consensus 197 i~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 230 (506)
T PRK13549 197 IYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAGM 230 (506)
T ss_pred EEEeCcHH-HHHHhcCEEEEEEC-CEEeeecccccC
Confidence 99999974 78899999999987 888888887654
No 133
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.3e-46 Score=296.28 Aligned_cols=179 Identities=28% Similarity=0.496 Sum_probs=157.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .+.++|+||++.+++.+|++||+.+...... .. .
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~ 102 (223)
T TIGR03740 32 LGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----D 102 (223)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----H
Confidence 59999999999999999988 79999999999875432 2468999999999999999999987654321 11 2
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
..+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||+|||+.+++.+.++|+++++++.++|++||
T Consensus 103 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH 182 (223)
T TIGR03740 103 SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182 (223)
T ss_pred HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45778999999998899999999999999999999999999999999999999999999999999999877889999999
Q ss_pred CCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
++. .+..+||++++|++ |+++..|++.+
T Consensus 183 ~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 183 ILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred CHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 974 67899999999987 88888887754
No 134
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.9e-46 Score=297.73 Aligned_cols=182 Identities=25% Similarity=0.312 Sum_probs=156.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.... .++.++|++|++.+++.+|+.||+.+....... .
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~- 106 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR---R- 106 (230)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc---c-
Confidence 59999999999999999998 79999999999875321 245689999999999999999999886543211 1
Q ss_pred HHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 77 LELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
..+.+.++++.++ +....++++.+||||||||++|||||+.+|+++||||||++||+.++..+.++|++++++ +.|
T Consensus 107 --~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 184 (230)
T TIGR03410 107 --SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184 (230)
T ss_pred --hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence 1234567777776 567789999999999999999999999999999999999999999999999999999875 789
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
+|++||+.. .+..+||+++++++ |+++..|+++++
T Consensus 185 ii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~~~ 219 (230)
T TIGR03410 185 ILLVEQYLD-FARELADRYYVMER-GRVVASGAGDEL 219 (230)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHc
Confidence 999999974 78889999999987 888889988876
No 135
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.2e-46 Score=297.61 Aligned_cols=190 Identities=24% Similarity=0.269 Sum_probs=156.9
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcc---cc-cceEEEEecCCCCCCCCCHHHHHHHHHHccCC-c--
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRT---VM-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-R-- 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~-- 72 (197)
+||||||||||+|+|+|+.+ +|++|+|.++|.++... .. +..++|++|++.+++.+|+.||+.+....... .
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~ 111 (243)
T TIGR01978 32 MGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE 111 (243)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhccccc
Confidence 59999999999999999951 37999999999987532 11 23489999999999999999999876432110 0
Q ss_pred -cccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 73 -RTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 73 -~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
........+.+.++++.+++. ...++++. +||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 191 (243)
T TIGR01978 112 EPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR 191 (243)
T ss_pred ccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 011223345688999999997 46788887 599999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhHHH
Q psy4235 150 CESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++.|+|++||++. .+... ||++++|++ |+++..|+++++.
T Consensus 192 ~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 233 (243)
T TIGR01978 192 EPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDVELAK 233 (243)
T ss_pred HCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCHHHhc
Confidence 77899999999974 67777 899999987 8888889887553
No 136
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.1e-46 Score=302.19 Aligned_cols=189 Identities=26% Similarity=0.338 Sum_probs=160.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHcc-CCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT-MDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~-~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+||.||+.++.... .......
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 111 (256)
T TIGR03873 33 LGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDS 111 (256)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCC
Confidence 59999999999999999998 7999999999987532 23456899999988888899999998753211 0000011
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+.+.++++.+++.+..++++.+||+||+||++|||||+.+|+++||||||+|||+.++..+.++|+++++++.|+|
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 191 (256)
T TIGR03873 112 PHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191 (256)
T ss_pred HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 22345688899999999889999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++||++. .+..+||++++|++ |+++..|+.+++.
T Consensus 192 i~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 225 (256)
T TIGR03873 192 AALHDLN-LAASYCDHVVVLDG-GRVVAAGPPREVL 225 (256)
T ss_pred EEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHHHhh
Confidence 9999975 78899999999987 8888889888763
No 137
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=296.25 Aligned_cols=187 Identities=30% Similarity=0.453 Sum_probs=162.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+|+.||+.+...... ......
T Consensus 31 ~G~nG~GKStLl~~l~G~~~-p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~ 106 (235)
T cd03299 31 LGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEI 106 (235)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC---CCHHHH
Confidence 59999999999999999988 7999999999987542 234579999999999999999999987643321 112234
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+.+.++++.+++.+..++++.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.|++++.+ +.|+|++
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~ 186 (235)
T cd03299 107 ERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186 (235)
T ss_pred HHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788999999998899999999999999999999999999999999999999999999999999998765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||++. .+.+.||++++|++ |+++..|+++++.+
T Consensus 187 tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 219 (235)
T cd03299 187 THDFE-EAWALADKVAIMLN-GKLIQVGKPEEVFK 219 (235)
T ss_pred ecCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHHh
Confidence 99974 67889999999987 88888888876643
No 138
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-46 Score=299.65 Aligned_cols=188 Identities=31% Similarity=0.406 Sum_probs=158.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+++| +++|+|+++|+++.. ..+++.++|++|++.+++.+||.||+.+.......
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 115 (253)
T PRK14267 36 MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL 115 (253)
T ss_pred ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc
Confidence 699999999999999999873 259999999998751 12345799999999999999999999886532211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
........+.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus 116 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14267 116 -VKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194 (253)
T ss_pred -cCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 011223345678899999874 357889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++ +.|+|++||++. .+..+||++++|++ |+++..|+++++.
T Consensus 195 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 236 (253)
T PRK14267 195 LKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPTRKVF 236 (253)
T ss_pred Hhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 865 689999999974 68899999999987 8998999988775
No 139
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-46 Score=299.50 Aligned_cols=182 Identities=29% Similarity=0.441 Sum_probs=157.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|+++|.++.. ...++.++|++|++.+++ .|+.||+.+......
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~------- 105 (241)
T PRK14250 35 VGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG------- 105 (241)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-------
Confidence 59999999999999999988 799999999998753 233467999999998887 599999886532211
Q ss_pred HHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 78 ELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
.....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ |.|+
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 185 (241)
T PRK14250 106 EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185 (241)
T ss_pred cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 1134677899999996 5788999999999999999999999999999999999999999999999999999764 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. .+.++||++++|++ |+++..|+++++..
T Consensus 186 i~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 221 (241)
T PRK14250 186 IWITHNME-QAKRIGDYTAFLNK-GILVEYAKTYDFFT 221 (241)
T ss_pred EEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCHHHHhc
Confidence 99999974 68889999999987 88888898887753
No 140
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.3e-46 Score=334.20 Aligned_cols=193 Identities=36% Similarity=0.579 Sum_probs=166.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC--ceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL--VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~--~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||||+|+|+.+ | .+|+|.+||+++... .++.++||+|++.+++.+||+||+.+.+..........++
T Consensus 100 ~GpnGaGKSTLL~iLaG~~~-~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~ 177 (659)
T PLN03211 100 LGPSGSGKSTLLNALAGRIQ-GNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQE 177 (659)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHH
Confidence 69999999999999999987 4 489999999987542 3456899999999999999999999876543221222334
Q ss_pred HHHHHHHHHHHcCCccccc-----ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 79 LNKTITRVMENLGINHRRQ-----VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
..++++++++.+||.+..+ +.+++||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|++++++|+
T Consensus 178 ~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~ 257 (659)
T PLN03211 178 KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257 (659)
T ss_pred HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCC
Confidence 4567899999999987664 45678999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
|||+++|++...+.+.||++++|++ |++++.|+++++.++|.
T Consensus 258 TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~ 299 (659)
T PLN03211 258 TIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFE 299 (659)
T ss_pred EEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHH
Confidence 9999999986457899999999987 89999999999988774
No 141
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=299.36 Aligned_cols=187 Identities=23% Similarity=0.383 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|++++ +++|+|+++|+++.. ...++.++|++|++.+++ +||+||+.+.......
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~ 117 (254)
T PRK14273 39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT 117 (254)
T ss_pred ECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC
Confidence 599999999999999999873 258999999998742 123567999999988885 8999999886532211
Q ss_pred ccccHHHHHHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGI----NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++ .+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 118 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (254)
T PRK14273 118 --KDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195 (254)
T ss_pred --CCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 1122344667888999887 3457889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus 196 ~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 238 (254)
T PRK14273 196 LKE-SYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESSTDELFF 238 (254)
T ss_pred Hhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 964 789999999974 67899999999987 89988999988753
No 142
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.6e-46 Score=295.42 Aligned_cols=186 Identities=26% Similarity=0.374 Sum_probs=156.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHccC-CccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLTM-DRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~-~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|+++.. .++.++|++|++.++ ..+|+.+|+.+...... .......
T Consensus 12 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 88 (223)
T TIGR03771 12 LGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCV 88 (223)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcH
Confidence 59999999999999999988 799999999988642 345689999998764 34799999987532110 0000112
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
...+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.|+++++++.|+|+
T Consensus 89 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii 168 (223)
T TIGR03771 89 ADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168 (223)
T ss_pred HHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 23456888999999998889999999999999999999999999999999999999999999999999999877899999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+||+.. .+.++||+++++ + |+++..|+++++.
T Consensus 169 ~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~~~ 200 (223)
T TIGR03771 169 TTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQLQ 200 (223)
T ss_pred EeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHHhc
Confidence 999974 688999999998 6 8888889888764
No 143
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1e-45 Score=301.72 Aligned_cols=188 Identities=23% Similarity=0.311 Sum_probs=159.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++. +++.+|+.+++.+....... ..
T Consensus 45 ~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~--~~ 121 (267)
T PRK15112 45 IGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD--LE 121 (267)
T ss_pred EcCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC--CC
Confidence 69999999999999999998 7999999999987531 22356999999975 67788999999876543211 11
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 76 WLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
.....+.+.++++.+++. ...++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +.
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 201 (267)
T PRK15112 122 PEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI 201 (267)
T ss_pred HHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 223445788999999994 6778899999999999999999999999999999999999999999999999999765 88
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 202 tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 239 (267)
T PRK15112 202 SYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGSTADVLA 239 (267)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCHHHHhc
Confidence 9999999974 78889999999987 88888888887653
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=301.83 Aligned_cols=186 Identities=23% Similarity=0.363 Sum_probs=159.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... .+++.++|++|++. +++..|+.+|+.+...... ...
T Consensus 41 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~---~~~ 116 (269)
T PRK13648 41 VGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA---VPY 116 (269)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC---CCH
Confidence 59999999999999999998 7999999999987532 34567999999974 6777899999988643221 122
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
....+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti 196 (269)
T PRK13648 117 DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196 (269)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 334456788999999998899999999999999999999999999999999999999999999999999999765 8899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||++. .+.. ||++++|++ |+++..|+++++..
T Consensus 197 iivtH~~~-~~~~-~d~i~~l~~-G~i~~~g~~~~~~~ 231 (269)
T PRK13648 197 ISITHDLS-EAME-ADHVIVMNK-GTVYKEGTPTEIFD 231 (269)
T ss_pred EEEecCch-HHhc-CCEEEEEEC-CEEEEecCHHHHhc
Confidence 99999975 5654 999999987 89988999887644
No 145
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=298.59 Aligned_cols=186 Identities=27% Similarity=0.432 Sum_probs=156.0
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+.. + |++|+|.++|+++.. ..+++.++|++|++.+|+. ||.||+.+.......
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 116 (253)
T PRK14242 38 IGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGV 116 (253)
T ss_pred ECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCC
Confidence 59999999999999999863 2 479999999998743 1234679999999988884 999999886533211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus 117 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 117 --KDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 112233567888999999843 46788999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++ +.|||++||+.. .+.++||++++|++ |+++..|+++++.
T Consensus 195 ~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 236 (253)
T PRK14242 195 LKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPTEQIF 236 (253)
T ss_pred Hhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 954 789999999974 68899999999987 8888889988765
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-46 Score=305.40 Aligned_cols=185 Identities=23% Similarity=0.320 Sum_probs=156.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--------ccccceEEEEecCCC--CCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--------TVMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--------~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ..+++.++|++|++. +++ .|+.||+.+......
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~ 120 (289)
T PRK13645 43 IGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLG 120 (289)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcC
Confidence 59999999999999999998 799999999998741 123457999999973 444 599999987643211
Q ss_pred CccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.......+.+.++++.++|. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++
T Consensus 121 ---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 197 (289)
T PRK13645 121 ---ENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLN 197 (289)
T ss_pred ---CCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11223345678899999994 67899999999999999999999999999999999999999999999999999987
Q ss_pred hC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 150 CE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 150 ~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++ +.|||++||++. .+.++||++++|++ |++++.|+++++.
T Consensus 198 ~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 239 (289)
T PRK13645 198 KEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSPFEIF 239 (289)
T ss_pred HhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 64 889999999974 68899999999987 8888889887764
No 147
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-46 Score=304.55 Aligned_cols=186 Identities=24% Similarity=0.338 Sum_probs=159.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCce---eEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~---G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+++ |++ |+|.++|.++... ..++.+||+||++. +++.+||.||+.|......
T Consensus 39 ~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~--- 114 (282)
T PRK13640 39 IGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA--- 114 (282)
T ss_pred ECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC---
Confidence 59999999999999999998 676 9999999998542 23457999999974 6777899999987643221
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
.......+.+.++++.++|.+..++++.+||+||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |
T Consensus 115 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g 194 (282)
T PRK13640 115 VPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN 194 (282)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 123344567889999999999999999999999999999999999999999999999999999999999999999765 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|||++||+.. .+ ..||++++|++ |++++.|+++++..
T Consensus 195 ~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~~~~ 232 (282)
T PRK13640 195 LTVISITHDID-EA-NMADQVLVLDD-GKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 99999999975 55 57999999987 89989999987654
No 148
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-46 Score=303.85 Aligned_cols=186 Identities=25% Similarity=0.340 Sum_probs=158.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.++|+||++. .+...||.+|+.|...... ..
T Consensus 42 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~---~~ 117 (280)
T PRK13633 42 LGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLG---IP 117 (280)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcC---CC
Confidence 59999999999999999998 799999999998853 223567999999974 2334699999988654321 12
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
.....+.+.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t 197 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT 197 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 2334567889999999999999999999999999999999999999999999999999999999999999999764 899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||++||++. .+.. ||++++|++ |+++..|+++++..
T Consensus 198 illvtH~~~-~~~~-~d~v~~l~~-G~i~~~g~~~~~~~ 233 (280)
T PRK13633 198 IILITHYME-EAVE-ADRIIVMDS-GKVVMEGTPKEIFK 233 (280)
T ss_pred EEEEecChH-HHhc-CCEEEEEEC-CEEEEecCHHHHhc
Confidence 999999985 5655 999999987 88888999988754
No 149
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4e-46 Score=327.90 Aligned_cols=188 Identities=21% Similarity=0.361 Sum_probs=161.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-cccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~ 75 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... . .++.++|++|++.+++.+||.||+.++...... ....
T Consensus 36 ~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 114 (501)
T PRK10762 36 VGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRID 114 (501)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccC
Confidence 69999999999999999998 7999999999987432 1 235689999999999999999999886432110 0112
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
....++++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|+++++++.|+
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tv 194 (501)
T PRK10762 115 WKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGI 194 (501)
T ss_pred HHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 23344678899999999988999999999999999999999999999999999999999999999999999998778899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
|++||+.. .+..+||++++|++ |+++..|+++++
T Consensus 195 ii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (501)
T PRK10762 195 VYISHRLK-EIFEICDDVTVFRD-GQFIAEREVADL 228 (501)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCcC
Confidence 99999974 78899999999987 888888877654
No 150
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-45 Score=294.36 Aligned_cols=187 Identities=28% Similarity=0.400 Sum_probs=162.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|.++ |++|+|.++|+++... ..++.++|++|++.+++.+|+.+|+.+...... ......
T Consensus 32 ~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~ 107 (232)
T cd03300 32 LGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEI 107 (232)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHH
Confidence 59999999999999999998 7999999999988542 234578999999999999999999987654321 112234
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~ 187 (232)
T cd03300 108 KERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV 187 (232)
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 557788999999998999999999999999999999999999999999999999999999999999999865 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. .+.+.||++++|++ |++.+.|+.+++..
T Consensus 188 sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~~~~~~ 220 (232)
T cd03300 188 THDQE-EALTMSDRIAVMNK-GKIQQIGTPEEIYE 220 (232)
T ss_pred eCCHH-HHHHhcCEEEEEEC-CEEEecCCHHHHHh
Confidence 99974 67899999999987 88888888877654
No 151
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=8e-46 Score=301.43 Aligned_cols=188 Identities=28% Similarity=0.394 Sum_probs=158.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCcc--------cccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT--------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~~--------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
+||||||||||+++|+|+++ |+ +|+|+++|.++... ..++.++|+||++.+++.+||.||+.+.....
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 114 (262)
T PRK09984 36 LGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGS 114 (262)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhccc
Confidence 59999999999999999987 44 59999999987421 22456899999999999999999998753211
Q ss_pred CC-----ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 70 MD-----RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 70 ~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
.. ...........+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 194 (262)
T PRK09984 115 TPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194 (262)
T ss_pred ccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHH
Confidence 00 0001123345788999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
|++++++ |.|+|++||+.. .+..+||++++|++ |++++.|+++++
T Consensus 195 l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~ 240 (262)
T PRK09984 195 LRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHh
Confidence 9999764 899999999974 68899999999987 888889998875
No 152
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=299.15 Aligned_cols=189 Identities=25% Similarity=0.391 Sum_probs=158.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.+| |++|+|.++|.++.. ..+++.++|++|++.+++.+||.||+.+.......
T Consensus 36 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~ 115 (258)
T PRK14241 36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGV 115 (258)
T ss_pred ECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCC
Confidence 599999999999999999873 279999999998742 13346799999999999999999999886543211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 116 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 116 --RNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 11223445678899999884 467889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+.++||++++|+ +.|++++.|++++++.
T Consensus 194 ~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 194 LKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred Hhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 964 689999999974 6889999999997 2389999999887753
No 153
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6.1e-46 Score=333.56 Aligned_cols=195 Identities=49% Similarity=0.776 Sum_probs=172.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC--ceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL--VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~--~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+|||||||||||++|+|..++. .+|+|.+||.+++...+++.+||++|++.+++.+||+||+.|.+..........++
T Consensus 57 ~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~ 136 (617)
T TIGR00955 57 MGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE 136 (617)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH
Confidence 6999999999999999988731 38999999999875556678999999999999999999999987655332233445
Q ss_pred HHHHHHHHHHHcCCcccccccCC------CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235 79 LNKTITRVMENLGINHRRQVQIS------GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES 152 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~------~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 152 (197)
..+.++++++.+|+.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++++|
T Consensus 137 ~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g 216 (617)
T TIGR00955 137 KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216 (617)
T ss_pred HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCC
Confidence 56789999999999988888876 599999999999999999999999999999999999999999999998779
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
+|+|+++|++..++.+.||++++|++ |++++.|+++++.++|.
T Consensus 217 ~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 217 KTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFS 259 (617)
T ss_pred CEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHH
Confidence 99999999986578999999999987 89999999999987764
No 154
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=296.00 Aligned_cols=188 Identities=24% Similarity=0.372 Sum_probs=157.7
Q ss_pred CCCCCCcHHHHHHHHhcCcC--CCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--GLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+|+|+|+++ +|++|+|.++|+++... ..++.++|+||++.+|+ .|++||+.++...+... ..
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~ 111 (246)
T PRK14269 34 IGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KN 111 (246)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cC
Confidence 59999999999999999874 26899999999988532 23456999999999887 59999998864332110 01
Q ss_pred HHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 76 WLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.....+.+.++++.+++. +..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.|++++.
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~- 190 (246)
T PRK14269 112 KDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH- 190 (246)
T ss_pred hHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-
Confidence 123445678899999995 346788999999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 191 ~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 230 (246)
T PRK14269 191 NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGESKEFFE 230 (246)
T ss_pred CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCHHHHHh
Confidence 889999999974 68899999999987 89998999887653
No 155
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-46 Score=326.92 Aligned_cols=188 Identities=24% Similarity=0.350 Sum_probs=161.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccC-Ccc--
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTM-DRR-- 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~-- 73 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++.... .++.++|++|++.+++.+||.||+.+...... ...
T Consensus 37 iG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 115 (510)
T PRK09700 37 LGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVN 115 (510)
T ss_pred ECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccccccc
Confidence 69999999999999999998 79999999999885421 23469999999999999999999987532110 000
Q ss_pred -ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235 74 -TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES 152 (197)
Q Consensus 74 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 152 (197)
.......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++|
T Consensus 116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 195 (510)
T PRK09700 116 IIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195 (510)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 1122345678899999999988999999999999999999999999999999999999999999999999999998778
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
.|||++||+.. .+..+||++++|++ |++++.|+++++
T Consensus 196 ~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~ 232 (510)
T PRK09700 196 TAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSDV 232 (510)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhhC
Confidence 99999999974 78899999999987 888888888764
No 156
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=299.11 Aligned_cols=188 Identities=24% Similarity=0.393 Sum_probs=157.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|++++ |++|+|+++|+++.. ..+++.++|++|++.+++. ||.||+.+....+..
T Consensus 51 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 129 (267)
T PRK14235 51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL 129 (267)
T ss_pred ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc
Confidence 599999999999999999873 489999999998752 1235678999999988885 999999886532211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
. .......+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 130 ~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 208 (267)
T PRK14235 130 A-RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208 (267)
T ss_pred c-cchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 0 112233456788999999953 46788999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 209 l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 251 (267)
T PRK14235 209 LRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDTEKMFT 251 (267)
T ss_pred Hhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 965 689999999974 78899999999987 89989999887753
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=298.54 Aligned_cols=187 Identities=25% Similarity=0.408 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+++ | |++|+|.++|+++.. ..+++.++|++|++.+++ +|+.||+.+......
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~- 122 (260)
T PRK10744 45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE- 122 (260)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC-
Confidence 59999999999999999985 2 479999999998742 123567999999998887 799999987653221
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
........+++.++++.+++. +..++++.+|||||+||++|||||+.+|++|||||||+|||+.+++.+.+.|++
T Consensus 123 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 201 (260)
T PRK10744 123 -KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201 (260)
T ss_pred -CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 112223345688899999874 457889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||++. .+..+||++++|++ |+++..|+++++..
T Consensus 202 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 244 (260)
T PRK10744 202 LKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNTDTIFT 244 (260)
T ss_pred Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 964 689999999974 67889999999987 89988899887653
No 158
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=330.96 Aligned_cols=188 Identities=23% Similarity=0.277 Sum_probs=162.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++... .+++.++|+||++ .+++.+||.+|+.+....+..
T Consensus 356 vG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~- 433 (623)
T PRK10261 356 VGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL- 433 (623)
T ss_pred ECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC-
Confidence 69999999999999999998 7999999999987531 1345799999997 588999999999886543211
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.......+++.++++.++|. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++
T Consensus 434 -~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 434 -LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred -CCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 11223456788999999996 6789999999999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.|+|++|||.. .+..+||++++|.+ |++++.|++++++.
T Consensus 513 ~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~~i~~ 553 (623)
T PRK10261 513 FGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRRAVFE 553 (623)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhc
Confidence 899999999974 78899999999987 89999999988753
No 159
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.4e-45 Score=294.49 Aligned_cols=180 Identities=31% Similarity=0.418 Sum_probs=153.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEe-cCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVA-QQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.++|++ |.+.+++.+|+.||+.+...... ....
T Consensus 53 ~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~ 128 (236)
T cd03267 53 IGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD---LPPA 128 (236)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcC---CCHH
Confidence 59999999999999999998 799999999987632 23445789998 55778888999999987654321 1122
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI 156 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ii 156 (197)
...+.+.++++.+++.+..++++.+||+|||||++||+||+.+|++|||||||++||+.+++.+.++|++++++ +.|+|
T Consensus 129 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 208 (236)
T cd03267 129 RFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208 (236)
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 33456788999999998889999999999999999999999999999999999999999999999999999765 78999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
++||++. .+..+||++++|.+ |++++.|
T Consensus 209 ivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 209 LTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred EEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999974 78899999999987 8876543
No 160
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-45 Score=325.13 Aligned_cols=182 Identities=20% Similarity=0.312 Sum_probs=160.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.... . ++.++|++|++.+++.+||.||+.+.... .
T Consensus 43 iG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~ 114 (510)
T PRK15439 43 LGGNGAGKSTLMKIIAGIVP-PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------R 114 (510)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------c
Confidence 69999999999999999998 79999999999875321 1 24589999999999999999999875321 1
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
...++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++|.+||
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 194 (510)
T PRK15439 115 QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194 (510)
T ss_pred hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 12346788999999999889999999999999999999999999999999999999999999999999999987889999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus 195 ivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 228 (510)
T PRK15439 195 FISHKLP-EIRQLADRISVMRD-GTIALSGKTADLS 228 (510)
T ss_pred EEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHHcC
Confidence 9999974 78899999999987 8888889887653
No 161
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.2e-45 Score=296.71 Aligned_cols=184 Identities=29% Similarity=0.407 Sum_probs=158.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+.+ + +|+|.++|+++... .+++.++|++|++.+++.+|+.+|+.++.... ....
T Consensus 28 ~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~ 101 (248)
T PRK03695 28 VGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK----TRTE 101 (248)
T ss_pred ECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----CCcH
Confidence 59999999999999999875 4 89999999987532 23456899999988888899999998763211 1122
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT-------EPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
...+.+.++++.+++.+..++++.+||+|||||++|||||+. +|++|||||||+|||+.++..+.++|+++++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~ 181 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 335678899999999988899999999999999999999997 6799999999999999999999999999987
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++.|+|++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus 182 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 221 (248)
T PRK03695 182 QGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRDEVL 221 (248)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHh
Confidence 7899999999974 68899999999987 8888889887764
No 162
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=300.67 Aligned_cols=186 Identities=19% Similarity=0.276 Sum_probs=159.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+|+||||||||+++|+|+++ |++|+|.++|+++... ..++.++|++|++. +++..||.||+.+...... ...
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~ 114 (277)
T PRK13642 39 IGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG---IPR 114 (277)
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC---CCH
Confidence 59999999999999999998 7999999999987532 24567999999974 6777899999987643221 122
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
....+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++++++ |.|+
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 194 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 234467889999999998899999999999999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. .+. .||++++|++ |+++..|++++++.
T Consensus 195 il~sH~~~-~~~-~~d~i~~l~~-G~i~~~g~~~~~~~ 229 (277)
T PRK13642 195 LSITHDLD-EAA-SSDRILVMKA-GEIIKEAAPSELFA 229 (277)
T ss_pred EEEeCCHH-HHH-hCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 99999975 554 6999999997 88888899887653
No 163
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.3e-45 Score=293.18 Aligned_cols=187 Identities=28% Similarity=0.414 Sum_probs=162.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+|+.+|+.||+.+...... ......
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~ 107 (237)
T TIGR00968 32 LGPSGSGKSTLLRIIAGLEQ-PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKI 107 (237)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHH
Confidence 59999999999999999988 7999999999987542 234569999999999999999999987654321 112233
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.++|++++.+ +.|+|++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~ 187 (237)
T TIGR00968 108 KARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187 (237)
T ss_pred HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 456789999999998899999999999999999999999999999999999999999999999999998775 7899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||++. .+.++||++++|++ |++++.|+.+++.+
T Consensus 188 sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 188 THDQE-EAMEVADRIVVMSN-GKIEQIGSPDEVYD 220 (237)
T ss_pred eCCHH-HHHhhcCEEEEEEC-CEEEEecCHHHHHc
Confidence 99974 67899999999987 88888898887653
No 164
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-45 Score=299.19 Aligned_cols=191 Identities=27% Similarity=0.373 Sum_probs=165.0
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CC---ceeEEEECCeeCCc---c---c-ccceEEEEecCC--CCCCCCCHHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GL---VQGEILLNGCPISR---T---V-MSRISGYVAQQD--FLIEELTVLEHLQFMAK 67 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~---~~G~i~~~g~~~~~---~---~-~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~ 67 (197)
+|.|||||||+.++|+|+++ ++ .+|+|.|+|+++.. . . +.+.|+|+||++ .|.|-+||.+.+.....
T Consensus 37 VGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~ 116 (316)
T COG0444 37 VGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR 116 (316)
T ss_pred EcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHH
Confidence 69999999999999999997 32 57999999998743 1 1 235799999996 58899999999988776
Q ss_pred ccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 68 LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
.+.... ..++..+++.++|+.+|+.+ ..+.+|.+|||||||||.||.||+.+|++||.||||++||...+.+|+++
T Consensus 117 ~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~L 195 (316)
T COG0444 117 LHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDL 195 (316)
T ss_pred Hhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHH
Confidence 543210 23455678999999999974 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 145 LKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 145 l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|+++++ .|.++|++|||+ ..+.++||||+||.. |++++.|+.+++++.
T Consensus 196 l~~l~~e~~~aiilITHDl-~vva~~aDri~VMYa-G~iVE~g~~~~i~~~ 244 (316)
T COG0444 196 LKELQREKGTALILITHDL-GVVAEIADRVAVMYA-GRIVEEGPVEEIFKN 244 (316)
T ss_pred HHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEEC-cEEEEeCCHHHHhcC
Confidence 999987 489999999997 589999999999987 999999999988753
No 165
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-45 Score=294.51 Aligned_cols=188 Identities=25% Similarity=0.392 Sum_probs=157.9
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+++ | |++|+|+++|.++.. ...++.++|+||++.+++.+|+.||+.+......
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~- 114 (252)
T PRK14256 36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG- 114 (252)
T ss_pred ECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC-
Confidence 59999999999999999975 2 268999999998742 1235679999999999999999999987643221
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
........+.+.++++.+++.. ..++.+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 115 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 193 (252)
T PRK14256 115 -RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE 193 (252)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1112233456788999999853 46788999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|||++||+.. .+.++||++++|.+ |+++..|+++++..
T Consensus 194 ~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 236 (252)
T PRK14256 194 LKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGETKKIFT 236 (252)
T ss_pred HHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 975 589999999974 77899999999987 89988999887753
No 166
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=322.65 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=160.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... ..++.++|++|++.+++.+||.||+.+............
T Consensus 30 iG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 108 (491)
T PRK10982 30 MGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQ 108 (491)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCH
Confidence 69999999999999999998 7999999999987532 124569999999999999999999987532111000112
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+.+.++++.+++....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|.|+|
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 188 (491)
T PRK10982 109 DKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIV 188 (491)
T ss_pred HHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 23345788999999999888999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
++||+.. ++..+||++++|++ |+++..|+++++
T Consensus 189 i~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 189 YISHKME-EIFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred EEecCHH-HHHHhCCEEEEEEC-CEEEeecChhhC
Confidence 9999974 78899999999997 899888887654
No 167
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.8e-45 Score=295.79 Aligned_cols=187 Identities=26% Similarity=0.323 Sum_probs=157.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee-----CCcc---c----ccceEEEEecCC--CCCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP-----ISRT---V----MSRISGYVAQQD--FLIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~-----~~~~---~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~ 66 (197)
+||||||||||+|+|+|+++ |++|+|.++|++ +... . .++.++|++|++ .+++.+|+.+|+.+..
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~ 116 (258)
T PRK11701 38 VGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERL 116 (258)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHH
Confidence 59999999999999999998 799999999988 5431 1 234689999997 4677889999997643
Q ss_pred HccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 67 KLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l 145 (197)
..... .........+.++++.+++. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|
T Consensus 117 ~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 194 (258)
T PRK11701 117 MAVGA--RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL 194 (258)
T ss_pred HHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 22111 01123345678999999997 4788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++++++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus 195 ~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 240 (258)
T PRK11701 195 RGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLTDQVL 240 (258)
T ss_pred HHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHh
Confidence 998765 889999999974 67789999999987 8999999988775
No 168
>KOG0061|consensus
Probab=100.00 E-value=1.1e-45 Score=330.22 Aligned_cols=195 Identities=49% Similarity=0.786 Sum_probs=180.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+|||||||||||++|+|...+ ..+|+|.+||++.....+++..|||.|++.+++.+||+|++.|.+.++........+
T Consensus 62 mG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~ 141 (613)
T KOG0061|consen 62 MGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE 141 (613)
T ss_pred ECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH
Confidence 699999999999999999863 378999999988877778889999999999999999999999999887655445667
Q ss_pred HHHHHHHHHHHcCCcccccccCC-----CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 79 LNKTITRVMENLGINHRRQVQIS-----GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
.+++++++++.+||.+.+|+.++ .+||||||||+||.-|+++|.+|+|||||+|||..+..++++.|++++++|+
T Consensus 142 k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~gr 221 (613)
T KOG0061|consen 142 KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGR 221 (613)
T ss_pred HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCC
Confidence 78899999999999999999886 5999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
|||++.|+|...+++.+|++++|.+ |++++.|+++++.++|.
T Consensus 222 tVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~~~~~~ff~ 263 (613)
T KOG0061|consen 222 TVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSPRELLEFFS 263 (613)
T ss_pred EEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCHHHHHHHHH
Confidence 9999999999999999999999997 89999999999988774
No 169
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=280.42 Aligned_cols=181 Identities=28% Similarity=0.372 Sum_probs=160.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+++|+.. |+.|+|.+||.+++..... -|.|||++.++|.+|+.||++|+...... .+.+..
T Consensus 37 lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi---~k~~R~ 110 (259)
T COG4525 37 LGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVIDNVAFGLQLRGI---EKAQRR 110 (259)
T ss_pred EcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCCCcc--ceeEeccCccchhhHHHHHHHHHHHhcCC---CHHHHH
Confidence 59999999999999999998 7999999999999754322 28999999999999999999999887643 345667
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
+.+.+++..+||.+..++++.+||||||||+.|||||+.+|++|+||||+++||.-+++++.++|-++++ .|+.++++|
T Consensus 111 ~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT 190 (259)
T COG4525 111 EIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT 190 (259)
T ss_pred HHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 7899999999999999999999999999999999999999999999999999999999999999999875 499999999
Q ss_pred cCCcchHHhhcCeEEEEeCC-cEEEEecCh
Q psy4235 160 HQPTSGVFEKFDTVSLLAHG-GLLAYHGQV 188 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~g-g~i~~~g~~ 188 (197)
|+.. ++.-.++++++|..+ |+|+..-++
T Consensus 191 H~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 191 HDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred ccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 9985 678889999999853 678765444
No 170
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-45 Score=318.71 Aligned_cols=189 Identities=28% Similarity=0.336 Sum_probs=166.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--c---ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--R---TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~---~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+|+||||||||.|+|+|+.+ |++|+|.++|.+++ . ...++.+-++||+| .+.|.+||.+++......+....
T Consensus 323 VGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~ 401 (539)
T COG1123 323 VGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS 401 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc
Confidence 69999999999999999998 69999999998732 1 12345688999986 58899999999998876554322
Q ss_pred ccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235 74 TTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE- 151 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~- 151 (197)
..+.++++.++++.++|.. .++++|.+||||||||++|||||+.+|++|++|||||+||+..+.++.++|+++.++
T Consensus 402 --~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 402 --GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred --hHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 3445568999999999986 799999999999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|.|.+++|||. ..+..+||||++|.. |++++.|+.+++++.
T Consensus 480 g~t~lfISHDl-~vV~~i~drv~vm~~-G~iVE~G~~~~v~~~ 520 (539)
T COG1123 480 GLTYLFISHDL-AVVRYIADRVAVMYD-GRIVEEGPTEKVFEN 520 (539)
T ss_pred CCEEEEEeCCH-HHHHhhCceEEEEEC-CeEEEeCCHHHHhcC
Confidence 89999999997 489999999999998 999999988887653
No 171
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=294.40 Aligned_cols=187 Identities=21% Similarity=0.368 Sum_probs=155.6
Q ss_pred CCCCCCcHHHHHHHHhcC---cCC-CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKR---VKG-LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~---~~~-~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+ .++ +++|+|.++|.++... ..++.++|+||++.+++ .|+.||+.+.......
T Consensus 35 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~ 113 (250)
T PRK14245 35 IGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV 113 (250)
T ss_pred ECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence 599999999999999996 331 2589999999987531 23456999999998887 5999999876543211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 114 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14245 114 --KDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191 (250)
T ss_pred --CcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 111223456788999999853 56888999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+. ++.|||++||+.. .+.+.||++++|++ |++++.|+++++.+
T Consensus 192 ~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~~~~~~ 234 (250)
T PRK14245 192 LK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDTKKIFT 234 (250)
T ss_pred Hh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCHHHHhc
Confidence 95 4789999999974 67899999999987 89999999988753
No 172
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.5e-45 Score=287.53 Aligned_cols=170 Identities=32% Similarity=0.461 Sum_probs=147.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---c----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---T----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. . ..++.++|++|++.+++.+|+.||+.+......
T Consensus 30 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~--- 105 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLLEK-FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK--- 105 (206)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC---
Confidence 59999999999999999998 799999999998532 1 134579999999999999999999998654221
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
.......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.++|+++.+++.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 185 (206)
T TIGR03608 106 LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185 (206)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 12233456788999999999889999999999999999999999999999999999999999999999999999987789
Q ss_pred EEEEEecCCcchHHhhcCeEEEE
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l 176 (197)
++|++||+.. . ...||++++|
T Consensus 186 tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 186 TIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred EEEEEeCCHH-H-HhhcCEEEeC
Confidence 9999999974 4 4689999875
No 173
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.9e-46 Score=276.26 Aligned_cols=177 Identities=32% Similarity=0.467 Sum_probs=157.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+|||||||||||-+++|+.. |++|+|++.|+++... . ..+.+|||||...+.|+||..||+.....+...
T Consensus 42 VG~SGSGKSTLl~vlAGLd~-~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-- 118 (228)
T COG4181 42 VGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-- 118 (228)
T ss_pred EcCCCCcHHhHHHHHhcCCC-CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC--
Confidence 69999999999999999998 7999999999998532 1 236799999999999999999999998776532
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
........+.++|+.+||.+.++.+|.+|||||+|||+||||++..|++||.||||.+||..+-++|.+++-.+..+ |
T Consensus 119 -~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G 197 (228)
T COG4181 119 -SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197 (228)
T ss_pred -ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC
Confidence 12234567889999999999999999999999999999999999999999999999999999999999999999765 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY 184 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~ 184 (197)
.|.+++|||+ .+...|+|.+.|.. |+++.
T Consensus 198 ~TlVlVTHD~--~LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 198 TTLVLVTHDP--QLAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred ceEEEEeCCH--HHHHhhhheeeeec-ceecc
Confidence 9999999997 47899999999998 88763
No 174
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-45 Score=298.01 Aligned_cols=186 Identities=24% Similarity=0.405 Sum_probs=155.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|++++ |++|+|.++|.++.. ..+++.++|+||++.+++. ||.||+.+......
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~- 122 (269)
T PRK14259 45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING- 122 (269)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC-
Confidence 599999999999999999763 489999999998742 2334569999999988885 99999988654321
Q ss_pred ccccHHHHHHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGI----NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.. ....+.+.++++.+++ .+..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 123 --~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 199 (269)
T PRK14259 123 --YT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE 199 (269)
T ss_pred --Cc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 11 1233566778888876 3457889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeC----------CcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAH----------GGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~----------gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||++. .+..+||++++|++ .|++++.|+++++..
T Consensus 200 ~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 200 LKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred Hhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 864 689999999974 78999999999985 267889999988754
No 175
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.5e-45 Score=295.62 Aligned_cols=188 Identities=25% Similarity=0.383 Sum_probs=150.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|+++|.++.. ..+++.++|++|++.+++ .||.||+.+.............
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~ 111 (237)
T cd03252 34 VGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEA 111 (237)
T ss_pred ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHH
Confidence 59999999999999999998 799999999998743 223567999999988775 5999999874321100000000
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.++++.+ ++....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++++ ++.|+
T Consensus 112 ~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~ti 190 (237)
T cd03252 112 AKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTV 190 (237)
T ss_pred HHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEE
Confidence 0111234556655 56666788999999999999999999999999999999999999999999999999996 48999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|++||++. .+ ..||++++|++ |++++.|++++++..
T Consensus 191 ii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~~~~~~~ 226 (237)
T cd03252 191 IIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSHDELLAE 226 (237)
T ss_pred EEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCHHHHHhc
Confidence 99999985 55 56999999987 899899999887653
No 176
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-45 Score=294.89 Aligned_cols=187 Identities=24% Similarity=0.408 Sum_probs=156.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|++++ | ++|+|+++|+++.. ...++.++|++|++.+++. |++||+.+.......
T Consensus 44 ~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 122 (259)
T PRK14274 44 IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT 122 (259)
T ss_pred ECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC
Confidence 699999999999999999862 2 58999999998742 1234679999999988886 999999876433211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 123 --~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 200 (259)
T PRK14274 123 --KNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200 (259)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 11223345678889999885 346889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+.++||++++|++ |+++..|++++++.
T Consensus 201 ~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 243 (259)
T PRK14274 201 LKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDTNKMFS 243 (259)
T ss_pred Hhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhh
Confidence 965 789999999974 78899999999987 89999999988753
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-45 Score=298.79 Aligned_cols=189 Identities=24% Similarity=0.336 Sum_probs=158.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc--------eeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV--------QGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~--------~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
+||||||||||+|+|+|+++ |+ +|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+.....
T Consensus 33 ~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~ 111 (272)
T PRK13547 33 LGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPH 111 (272)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhccccc
Confidence 59999999999999999988 66 89999999987532 23456899999987666789999998753211
Q ss_pred CC-ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHH
Q psy4235 70 MD-RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSAN 139 (197)
Q Consensus 70 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~ 139 (197)
.. .........+.+.++++.+++.+..++++.+||||||||++|||||+ .+|++|||||||++||+.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~ 191 (272)
T PRK13547 112 ARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191 (272)
T ss_pred ccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHH
Confidence 00 00011223456788999999998899999999999999999999999 499999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 140 NVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 140 ~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
.+.++|++++++ +.|+|++||++. .+..+||++++|++ |+++..|+++++.
T Consensus 192 ~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 243 (272)
T PRK13547 192 RLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPADVL 243 (272)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHHHHc
Confidence 999999999876 899999999974 67889999999987 8888889887764
No 178
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-45 Score=293.33 Aligned_cols=186 Identities=24% Similarity=0.380 Sum_probs=156.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+|+||||||||+++|+|+.+| +++|+|.++|.++... ..++.++|+||++.+++ +|+.||+.+.......
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~ 114 (251)
T PRK14270 36 IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI 114 (251)
T ss_pred ECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC
Confidence 599999999999999999873 2799999999988431 23456999999998887 8999999876533211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 115 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 115 --KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred --CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11223345677899999874 457889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++ +.++|++||+.. .+.++||++++|++ |+++..|+++++.
T Consensus 193 ~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~ 234 (251)
T PRK14270 193 LKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTEKIF 234 (251)
T ss_pred HHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHHHHh
Confidence 876 589999999974 78899999999987 8898899998875
No 179
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=293.19 Aligned_cols=188 Identities=24% Similarity=0.401 Sum_probs=156.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.+ + |++|+|.++|+++... ..++.++|+||++.+++. |+.||+.+.......
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~ 115 (251)
T PRK14244 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL 115 (251)
T ss_pred ECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC
Confidence 59999999999999999975 2 3799999999987421 235679999999988886 999999876432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
........+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 116 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 116 -AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred -CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0112233456788999999864 45778999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+.++||++++|++ |+++..|+++++.+
T Consensus 195 ~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 237 (251)
T PRK14244 195 LKK-NFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTTQEIFK 237 (251)
T ss_pred Hhc-CCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence 864 799999999974 67889999999987 89988899888754
No 180
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.5e-44 Score=292.85 Aligned_cols=185 Identities=24% Similarity=0.337 Sum_probs=156.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCcccc-cceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVM-SRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+.+ | ++|+|+++|.++..... ++.++|++|++. +.+.+|+.+|+.+.......
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-- 111 (254)
T PRK10418 35 VGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-- 111 (254)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC--
Confidence 69999999999999999988 6 89999999998854332 356999999974 45667999998765432211
Q ss_pred ccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 74 TTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.. ..+.+.++++.+++.+ ..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++
T Consensus 112 -~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~ 188 (254)
T PRK10418 112 -PA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ 188 (254)
T ss_pred -Ch--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH
Confidence 11 2356889999999976 56889999999999999999999999999999999999999999999999999876
Q ss_pred C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+ |.|||++||++. .+..+||++++|++ |+++..|+++++.+
T Consensus 189 ~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~ 230 (254)
T PRK10418 189 KRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDVETLFN 230 (254)
T ss_pred hcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhh
Confidence 4 889999999974 67889999999987 88989999887753
No 181
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=292.45 Aligned_cols=187 Identities=26% Similarity=0.362 Sum_probs=155.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CC---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GL---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.+ .| ++|+|.++|+++.. ..+++.++|++|++.+++ +||.||+.+.......
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~ 115 (252)
T PRK14239 37 IGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI 115 (252)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC
Confidence 59999999999999999853 14 58999999998742 123467999999998887 7999999886432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus 116 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14239 116 --KDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193 (252)
T ss_pred --CcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence 11222345677889998874 456889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus 194 ~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 236 (252)
T PRK14239 194 LKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDTKQMFM 236 (252)
T ss_pred Hhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 865 689999999974 68899999999987 88889999888753
No 182
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-45 Score=294.24 Aligned_cols=188 Identities=28% Similarity=0.403 Sum_probs=152.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|+++|.++.. ...++.++|++|++.+++ .|++||+.++............
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~ 111 (234)
T cd03251 34 VGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEA 111 (234)
T ss_pred ECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHH
Confidence 59999999999999999998 799999999998743 223566999999998887 5999999875321100000000
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.++++.+ ++....++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+.|++++ ++.+|
T Consensus 112 ~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~ti 190 (234)
T cd03251 112 ARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTT 190 (234)
T ss_pred HHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEE
Confidence 0111245666666 67777888999999999999999999999999999999999999999999999999986 48899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|++||+.. .+.. ||++++|++ |+++..++++++...
T Consensus 191 i~~sh~~~-~~~~-~d~v~~l~~-G~i~~~~~~~~~~~~ 226 (234)
T cd03251 191 FVIAHRLS-TIEN-ADRIVVLED-GKIVERGTHEELLAQ 226 (234)
T ss_pred EEEecCHH-HHhh-CCEEEEecC-CeEeeeCCHHHHHHc
Confidence 99999985 5654 999999988 888888998887654
No 183
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=291.29 Aligned_cols=187 Identities=25% Similarity=0.424 Sum_probs=156.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.++ | ++|+|+++|+++.. ...++.++|++|++.+++ +|+.||+.+.......
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~ 113 (250)
T PRK14240 35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI 113 (250)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC
Confidence 599999999999999998752 2 68999999998753 123567999999998887 8999999986432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus 114 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14240 114 --KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191 (250)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 11223456778888888874 456889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+...||++++|++ |+++..|+++++..
T Consensus 192 ~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~ 234 (250)
T PRK14240 192 LKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDTVDLFT 234 (250)
T ss_pred Hhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 864 789999999974 68899999999988 88988898887653
No 184
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.2e-45 Score=320.30 Aligned_cols=188 Identities=20% Similarity=0.323 Sum_probs=158.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc-cc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR-RT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~ 74 (197)
+||||||||||+|+|+|+.+| |++|+|.++|+++.... .++.++|+||++.+++.+||.||+.+........ ..
T Consensus 33 iG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 112 (500)
T TIGR02633 33 CGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRM 112 (500)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcccccccccc
Confidence 699999999999999999873 37999999999885421 2356999999999999999999998764321100 01
Q ss_pred cHHHHHHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 75 TWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
......+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|.
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 192 (500)
T TIGR02633 113 AYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192 (500)
T ss_pred CHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 2233456788999999998664 678999999999999999999999999999999999999999999999999987789
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
|||++||+.. .+..+||++++|++ |+++..+++++
T Consensus 193 tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 193 ACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred EEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 9999999974 78899999999987 88887777654
No 185
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=294.70 Aligned_cols=187 Identities=25% Similarity=0.381 Sum_probs=155.2
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+.+ + |++|+|.++|+++... .+++.++|++|++.+++. |+.||+.+.......
T Consensus 53 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 131 (268)
T PRK14248 53 IGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGE 131 (268)
T ss_pred ECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC
Confidence 59999999999999999753 2 5899999999987531 234579999999988885 999999876432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus 132 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 209 (268)
T PRK14248 132 --RRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE 209 (268)
T ss_pred --CcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHH
Confidence 11122345577788888874 456889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|||++||++. .+.++||++++|++ |++++.|+++++..
T Consensus 210 ~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~ 252 (268)
T PRK14248 210 LKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQTEQIFT 252 (268)
T ss_pred Hhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 965 689999999974 68899999999987 89988999887653
No 186
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=291.33 Aligned_cols=187 Identities=25% Similarity=0.414 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.++ |++|+|.++|.++.. ..+++.++|++|++.+++ +|++||+.+.......
T Consensus 35 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~ 113 (250)
T PRK14262 35 IGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV 113 (250)
T ss_pred ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence 599999999999999999863 389999999998753 123467999999998887 7999999886533211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++.. ..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 114 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14262 114 --KSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191 (250)
T ss_pred --CcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 112233456788899988853 46889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+..+||++++|++ |+++..|+++++.+
T Consensus 192 ~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 234 (250)
T PRK14262 192 LSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPTREIVE 234 (250)
T ss_pred Hhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHHh
Confidence 865 689999999974 68899999999987 88888999988754
No 187
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=290.80 Aligned_cols=188 Identities=32% Similarity=0.430 Sum_probs=155.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|+++|. ++|+|.++|.++.. ..+++.++|++|++.+++.+|+.||+.+.......
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~ 115 (252)
T PRK14272 36 IGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI 115 (252)
T ss_pred ECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC
Confidence 5999999999999999998731 38999999998742 12345699999999999999999999876432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus 116 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 116 --RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred --CCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 11222345566777777653 456888999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus 194 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 236 (252)
T PRK14272 194 LKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPTDQLFT 236 (252)
T ss_pred Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 864 689999999975 78889999999988 88989999887753
No 188
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=293.84 Aligned_cols=187 Identities=25% Similarity=0.345 Sum_probs=157.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|++++ |++|+|.++|.++... ..++.++|+||++.+++ .||.||+.++......
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~ 130 (267)
T PRK14237 52 IGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGV 130 (267)
T ss_pred ECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCC
Confidence 599999999999999999863 4899999999987431 23567999999998887 5999999886432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++++.+||+||+||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 131 --~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 208 (267)
T PRK14237 131 --KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208 (267)
T ss_pred --CCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11223446678889999884 457889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.++|++||++. .+.++||++++|++ |++++.|+++++..
T Consensus 209 ~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 251 (267)
T PRK14237 209 LKK-NYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKTRNIFT 251 (267)
T ss_pred Hhc-CCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHhc
Confidence 964 689999999975 68899999999987 89999999988753
No 189
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-45 Score=320.61 Aligned_cols=189 Identities=25% Similarity=0.336 Sum_probs=158.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHH--ccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAK--LTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~--~~~~ 71 (197)
+||||||||||+|+|+|+++||++|+|+++|+++... ..++.++|++|++ .+++.+||.||+.+... ....
T Consensus 294 ~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (506)
T PRK13549 294 AGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGG 373 (506)
T ss_pred eCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccC
Confidence 6999999999999999998744899999999987532 1234689999995 47888999999987532 1100
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
........++.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+++++
T Consensus 374 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 453 (506)
T PRK13549 374 SRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ 453 (506)
T ss_pred cccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH
Confidence 0011223446788999999996 578999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
+|.|||++||+.. ++.++||++++|++ |+++..|+++++
T Consensus 454 ~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 454 QGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence 8999999999974 78899999999987 888888877665
No 190
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-45 Score=319.17 Aligned_cols=184 Identities=24% Similarity=0.353 Sum_probs=157.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++... .+++.++|++|++.+++.+||.||+.+............
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 114 (501)
T PRK11288 36 MGENGAGKSTLLKILSGNYQ-PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNR 114 (501)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCH
Confidence 69999999999999999998 7999999999987532 234679999999999999999999988532111000112
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+++.++++.+++....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++|.|+|
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 194 (501)
T PRK11288 115 RLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL 194 (501)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 33456788999999998888999999999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
++||++. .+..+||++++|++ |+++..++
T Consensus 195 iitHd~~-~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 195 YVSHRME-EIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred EEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence 9999974 78899999999987 88776554
No 191
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-44 Score=290.62 Aligned_cols=186 Identities=24% Similarity=0.366 Sum_probs=155.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+|+||||||||+|+|+|++++ |++|+|.++|+++.. ...++.++|++|++.+++ .||.||+.+.......
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~ 114 (251)
T PRK14251 36 IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV 114 (251)
T ss_pred ECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC
Confidence 599999999999999999862 379999999998742 123456999999998886 6999999876432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. ..+++++.+|||||+||++|||||+.+|+++||||||++||+.++..+.+.|++
T Consensus 115 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14251 115 --KDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192 (251)
T ss_pred --CCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHH
Confidence 11122345677889999984 456889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++ +.|+|++||++. .+.++||++++|++ |+++..|+++++.
T Consensus 193 ~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 234 (251)
T PRK14251 193 LKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPTEEMF 234 (251)
T ss_pred HHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCHHHHH
Confidence 864 689999999974 68889999999987 8888889988775
No 192
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=290.17 Aligned_cols=186 Identities=24% Similarity=0.383 Sum_probs=155.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||||||||+++|+|+.++ +++|+|.++|.++.. ...++.++|++|++.+++ .||.||+.+.......
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~- 112 (249)
T PRK14253 35 IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGI- 112 (249)
T ss_pred ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCC-
Confidence 599999999999999999873 269999999998742 234567999999999887 7999999876432211
Q ss_pred cccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 73 RTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
.......+.+.++++.+++. +..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|+++
T Consensus 113 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 191 (249)
T PRK14253 113 -KDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191 (249)
T ss_pred -CchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 11223345677788888874 4567889999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++ +.|||++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus 192 ~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 232 (249)
T PRK14253 192 KK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDTQVIF 232 (249)
T ss_pred hc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 76 589999999974 78899999999987 8998889888764
No 193
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=295.90 Aligned_cols=187 Identities=25% Similarity=0.422 Sum_probs=155.9
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.+ | |++|+|.++|.++... .+++.++|++|++.+++. ||.||+.+.......
T Consensus 71 ~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 149 (286)
T PRK14275 71 IGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI 149 (286)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC
Confidence 59999999999999999853 3 3899999999987421 235679999999988875 999999986533211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
. ......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus 150 ~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 227 (286)
T PRK14275 150 N--DKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE 227 (286)
T ss_pred C--cHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 1 1223345677888888873 567889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. +.+||++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 228 ~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~~~~~~ 270 (286)
T PRK14275 228 LRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPTAQLFT 270 (286)
T ss_pred Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 875 589999999974 67889999999987 88988999887753
No 194
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.8e-44 Score=318.79 Aligned_cols=190 Identities=25% Similarity=0.309 Sum_probs=158.9
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CCceeEEEEC-----------------------CeeCC-------c------ccccceE
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLN-----------------------GCPIS-------R------TVMSRIS 43 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~-----------------------g~~~~-------~------~~~~~~~ 43 (197)
+||||||||||+|+|+|+++ +|++|+|.++ |.++. . ..+++.+
T Consensus 32 iG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i 111 (520)
T TIGR03269 32 LGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRI 111 (520)
T ss_pred ECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcE
Confidence 69999999999999999962 3799999997 22221 0 1124568
Q ss_pred EEEecC-CCCCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC
Q psy4235 44 GYVAQQ-DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122 (197)
Q Consensus 44 ~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~ 122 (197)
+|+||+ +.+++.+||.||+.+...... .......+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 112 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~ 188 (520)
T TIGR03269 112 AIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188 (520)
T ss_pred EEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999997 678888999999988654321 1223445678899999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 123 ILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 123 llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
+|||||||++||+.++..+.++|++++++ |.|||++||+.. .+.++||++++|++ |+++..|+++++...+
T Consensus 189 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPDEVVAVF 260 (520)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHHHHHHHH
Confidence 99999999999999999999999999654 899999999974 67889999999987 8888889888776543
No 195
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-44 Score=319.50 Aligned_cols=188 Identities=25% Similarity=0.320 Sum_probs=159.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEEC-Cee---CCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCP---ISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~-g~~---~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+|+|+|+++ |++|+|.++ |.+ +... ..++.++|+||++.+++.+||.||+.+.....
T Consensus 316 ~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~- 393 (520)
T TIGR03269 316 VGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE- 393 (520)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC-
Confidence 59999999999999999998 799999996 642 2211 12356899999999999999999998754321
Q ss_pred CccccHHHHHHHHHHHHHHcCCcc-----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGINH-----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l 145 (197)
......++.+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|
T Consensus 394 ---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 394 ---LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 112223456889999999974 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
++++++ +.|||++||+.. .+..+||++++|++ |+++..|+++++.+.+
T Consensus 471 ~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~ 519 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDPEEIVEEL 519 (520)
T ss_pred HHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhhc
Confidence 999765 899999999974 78899999999987 8888889998876643
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.1e-44 Score=286.14 Aligned_cols=176 Identities=28% Similarity=0.472 Sum_probs=152.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... ..++.++|++|++.+++.+|+.||+.++...... .
T Consensus 37 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~--~ 113 (220)
T TIGR02982 37 TGPSGSGKTTLLTLIGGLRS-VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN--L 113 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC--C
Confidence 59999999999999999988 7999999999987431 2346799999999999989999999986543311 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~ 153 (197)
......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.|+++++ .+.
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 193 (220)
T TIGR02982 114 SYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193 (220)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 2233456788999999999889999999999999999999999999999999999999999999999999999986 489
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEE
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLL 182 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i 182 (197)
|+|++||+.. ...+||++++|++ |++
T Consensus 194 tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 194 TILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred EEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999973 4689999999987 654
No 197
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.9e-44 Score=293.23 Aligned_cols=187 Identities=24% Similarity=0.274 Sum_probs=158.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||||||||+++|+|+.+ |++|+|.++|.++... ..++.++|++|++ .+++..|+.+|+.+......
T Consensus 44 ~G~nGsGKSTLl~~l~Gl~~-p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~-- 120 (268)
T PRK10419 44 LGRSGCGKSTLARLLVGLES-PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL-- 120 (268)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--
Confidence 59999999999999999988 7999999999987431 2346799999997 46778899999876543211
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
..........+.++++.+++. ...++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++++++
T Consensus 121 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 200 (268)
T PRK10419 121 SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200 (268)
T ss_pred cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence 111223445788999999997 5789999999999999999999999999999999999999999999999999999765
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+.|+|++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus 201 ~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~ 240 (268)
T PRK10419 201 FGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVGDKL 240 (268)
T ss_pred cCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChhhcc
Confidence 889999999974 77889999999987 8898899988765
No 198
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.7e-45 Score=292.35 Aligned_cols=183 Identities=28% Similarity=0.421 Sum_probs=148.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++ .||.||+.++..... ..
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-----~~ 107 (238)
T cd03249 35 VGSSGCGKSTVVSLLERFYD-PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDAT-----DE 107 (238)
T ss_pred EeCCCCCHHHHHHHHhccCC-CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCC-----HH
Confidence 59999999999999999998 7999999999887431 23456999999988876 599999987532110 11
Q ss_pred HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.... .+.++++.+ ++....++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~- 186 (238)
T cd03249 108 EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM- 186 (238)
T ss_pred HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence 1111 123344444 55666778899999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
++.++|++||+.. .+. .||++++|++ |++++.++.+++...
T Consensus 187 ~g~~vi~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~~~~~~~ 227 (238)
T cd03249 187 KGRTTIVIAHRLS-TIR-NADLIAVLQN-GQVVEQGTHDELMAQ 227 (238)
T ss_pred CCCEEEEEeCCHH-HHh-hCCEEEEEEC-CEEEEeCCHHHHhhc
Confidence 7899999999975 554 8999999988 888888888877553
No 199
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=293.64 Aligned_cols=187 Identities=26% Similarity=0.375 Sum_probs=157.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||||||||+++|+|+++| |++|+|.++|.++... .+++.++|++|++.+|+ +|+.+|+.+......
T Consensus 53 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~-- 129 (276)
T PRK14271 53 MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK-- 129 (276)
T ss_pred ECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--
Confidence 599999999999999999874 3799999999987531 23567999999998888 799999987643221
Q ss_pred cccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 73 RTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
..........+.++++.+++.. ..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++
T Consensus 130 ~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 209 (276)
T PRK14271 130 LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209 (276)
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1122233455678899999863 457889999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++ ..|+|++||+.. .+..+||++++|++ |+++..|+++++.+
T Consensus 210 ~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~~ 251 (276)
T PRK14271 210 AD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPTEQLFS 251 (276)
T ss_pred hc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 76 489999999974 78899999999997 89988999888754
No 200
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-44 Score=289.13 Aligned_cols=186 Identities=26% Similarity=0.411 Sum_probs=155.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc-----eeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~-----~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+++|+|+++ |+ +|+|+++|.++.. ..+++.++|++|++.+++. |+.||+.+......
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~ 113 (251)
T PRK14249 36 IGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG 113 (251)
T ss_pred ECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC
Confidence 59999999999999999988 55 6999999998742 1345679999999998885 99999998654221
Q ss_pred CccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
. .......+.+.++++.+++. +..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|+
T Consensus 114 ~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 191 (251)
T PRK14249 114 T--TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191 (251)
T ss_pred C--ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 1 11122345577788888864 45788999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ ++.|||++||+.. .+...||++++|++ |++++.|+++++..
T Consensus 192 ~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 235 (251)
T PRK14249 192 ELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRTGEIFS 235 (251)
T ss_pred HHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCHHHHHh
Confidence 985 5789999999974 78899999999987 88888899887753
No 201
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=324.99 Aligned_cols=187 Identities=26% Similarity=0.288 Sum_probs=159.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC----------c---c---cc-cceEEEEecCC--CCCCCCCHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----------R---T---VM-SRISGYVAQQD--FLIEELTVLEH 61 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~----------~---~---~~-~~~~~~v~q~~--~~~~~ltv~e~ 61 (197)
+||||||||||+|+|+|+++ |++|+|.++|..+. . . .. ++.+|||+|++ .+++.+||.||
T Consensus 48 vG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~ 126 (623)
T PRK10261 48 VGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQ 126 (623)
T ss_pred ECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHH
Confidence 69999999999999999998 79999999987441 0 0 11 23689999997 68888999999
Q ss_pred HHHHHHccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA 138 (197)
Q Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~ 138 (197)
+.+....+. ........+++.++++.+||.+ .+++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 127 l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~ 204 (623)
T PRK10261 127 IAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ 204 (623)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHH
Confidence 998765321 1123344577889999999953 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 139 NNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 139 ~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
.++.++|++++++ |.|||++||+.. .+..+||++++|++ |++++.|++++++
T Consensus 205 ~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~-G~i~~~g~~~~~~ 257 (623)
T PRK10261 205 AQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQ-GEAVETGSVEQIF 257 (623)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeC-CeecccCCHHHhh
Confidence 9999999999865 899999999974 78899999999987 8898889888775
No 202
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-44 Score=292.46 Aligned_cols=187 Identities=27% Similarity=0.407 Sum_probs=157.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|++++ |++|+|+++|.++.. ..+++.++|++|++.+|+. |+.||+.+.......
T Consensus 57 ~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 135 (272)
T PRK14236 57 IGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI 135 (272)
T ss_pred ECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC
Confidence 599999999999999999873 489999999998753 1235679999999988886 999999876433211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
......++.+.++++.+++. +..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|++
T Consensus 136 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 213 (272)
T PRK14236 136 --NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITE 213 (272)
T ss_pred --CcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11122345678889988885 356888999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.++|++||+.. .+.+.||++++|++ |+++..|+++++..
T Consensus 214 ~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 256 (272)
T PRK14236 214 LKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDTDTLFT 256 (272)
T ss_pred HHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCHHHHhc
Confidence 975 689999999974 67889999999987 89988898887653
No 203
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.8e-44 Score=290.10 Aligned_cols=188 Identities=24% Similarity=0.306 Sum_probs=155.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee-----CCccc-------ccceEEEEecCCC--CCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP-----ISRTV-------MSRISGYVAQQDF--LIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~-----~~~~~-------~~~~~~~v~q~~~--~~~~ltv~e~l~~~~ 66 (197)
+||||||||||+++|+|+.+ |++|+|.++|.+ +.... .++.++|++|++. +++.+|+.+|+.+..
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~ 113 (253)
T TIGR02323 35 VGESGSGKSTLLGCLAGRLA-PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERL 113 (253)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHH
Confidence 59999999999999999988 799999999976 53211 1345899999974 456678999987643
Q ss_pred HccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 67 KLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l 145 (197)
..... .......+.+.++++.+++. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|
T Consensus 114 ~~~~~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l 191 (253)
T TIGR02323 114 MAIGA--RHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191 (253)
T ss_pred HHhcc--cchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 21110 01112346788999999997 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++.++ +.++|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 192 ~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 192 RGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLTDQVLD 238 (253)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCHHHHhc
Confidence 998764 899999999974 77889999999987 88888898887653
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-44 Score=293.17 Aligned_cols=187 Identities=25% Similarity=0.381 Sum_probs=154.7
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+|+||||||||+++|+|+++ + |++|+|.++|.++.. ...++.++|++|++.+++. |+.||+.++......
T Consensus 56 ~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~ 134 (271)
T PRK14238 56 IGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI 134 (271)
T ss_pred ECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCC
Confidence 59999999999999999976 2 589999999998742 1235679999999988875 999999986532211
Q ss_pred ccccHHHHHHHHHHHHHHcC----CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.++ +.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 135 --~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 135 --KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred --CcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 111223345667777764 44567889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 213 ~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~~ 255 (271)
T PRK14238 213 LKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDTDKIFS 255 (271)
T ss_pred HHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHc
Confidence 975 689999999974 67889999999987 88988999887753
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-44 Score=294.43 Aligned_cols=184 Identities=23% Similarity=0.396 Sum_probs=154.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|++++ |++|+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+.......
T Consensus 71 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 149 (285)
T PRK14254 71 IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY 149 (285)
T ss_pred ECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC
Confidence 599999999999999999863 589999999998742 1345679999999988886 999999876543211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++
T Consensus 150 ---~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~ 225 (285)
T PRK14254 150 ---DG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE 225 (285)
T ss_pred ---cH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 11 2345688899999884 457889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEE-EEeCCcEEEEecChhHHH
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVS-LLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~-~l~~gg~i~~~g~~~~~~ 192 (197)
++++ .++|++||+.. .+..+||+++ +|++ |+++..|+++++.
T Consensus 226 ~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~~~~~ 268 (285)
T PRK14254 226 LAEE-YTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDTDKIF 268 (285)
T ss_pred HhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCHHHHH
Confidence 9764 79999999974 7888999975 5676 8888889888764
No 206
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.7e-44 Score=318.22 Aligned_cols=188 Identities=27% Similarity=0.383 Sum_probs=159.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||||||||+|+|+|+++ ++|+|+++|.++... .+++.++|+||++ .+++.+||.||+.+....+..
T Consensus 318 ~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~- 394 (529)
T PRK15134 318 VGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP- 394 (529)
T ss_pred ECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-
Confidence 69999999999999999973 799999999987431 1245689999997 488889999999886432210
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.......++.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.++++|++++++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 011223446788999999997 5789999999999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.|||++||+.. .+..+||++++|++ |+++..|+++++++
T Consensus 475 ~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 515 (529)
T PRK15134 475 HQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDCERVFA 515 (529)
T ss_pred hCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCHHHHhc
Confidence 889999999974 78899999999997 88988999888753
No 207
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=319.03 Aligned_cols=185 Identities=21% Similarity=0.351 Sum_probs=155.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecC---CCCCCCCCHHHHHHHHHHcc---C
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQ---DFLIEELTVLEHLQFMAKLT---M 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ltv~e~l~~~~~~~---~ 70 (197)
+||||||||||+|+|+|+.+ |++|+|+++|+++... ..++.++|+||+ ..+++.+||.||+.+..... .
T Consensus 295 ~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (510)
T PRK09700 295 AGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGY 373 (510)
T ss_pred ECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccc
Confidence 69999999999999999998 7999999999987431 124568999998 46889999999998753211 0
Q ss_pred Cc--c-ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 71 DR--R-TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 71 ~~--~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.. . .......+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 453 (510)
T PRK09700 374 KGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453 (510)
T ss_pred cccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 00 0 01122335678999999997 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecCh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV 188 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~ 188 (197)
+++++|.|||++|||.. .+..+||++++|++ |+++..++.
T Consensus 454 ~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 454 QLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99877899999999974 78899999999988 888776654
No 208
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-44 Score=290.52 Aligned_cols=188 Identities=22% Similarity=0.382 Sum_probs=156.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--C--ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--L--VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~--~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+|+||||||||+|+|+|++++ | ++|+|.++|+++.. ..+++.++|++|++.+|+ +|+.||+.+......
T Consensus 39 ~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~- 116 (259)
T PRK14260 39 IGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA- 116 (259)
T ss_pred ECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-
Confidence 599999999999999999873 2 58999999998742 123456999999998888 799999987643221
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
........+.+.++++.+++. +..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++
T Consensus 117 -~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (259)
T PRK14260 117 -KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS 195 (259)
T ss_pred -CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 011223345677889988873 467889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeC----CcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAH----GGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~----gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||++. .+.++||++++|+. .|+++..|+++++.+
T Consensus 196 ~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 196 LRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred Hhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 865 589999999975 78899999999972 388999999988753
No 209
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-45 Score=289.99 Aligned_cols=183 Identities=27% Similarity=0.420 Sum_probs=148.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+.+ |++|+|+++|.++.. ..+++.++|++|++.+++. |+.||+.+..... ...
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-----~~~ 107 (229)
T cd03254 35 VGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNA-----TDE 107 (229)
T ss_pred ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCC-----CHH
Confidence 59999999999999999998 799999999988743 2345669999999988876 9999998753211 011
Q ss_pred HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
...+ .+.++++.+ ++....++++.+||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~- 186 (229)
T cd03254 108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM- 186 (229)
T ss_pred HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence 1111 123344444 55556677789999999999999999999999999999999999999999999999986
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
++.|+|++||+.. .+ ..||++++|++ |++++.|+.+++...
T Consensus 187 ~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~~~~~~~ 227 (229)
T cd03254 187 KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTHDELLAK 227 (229)
T ss_pred CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCHHHHHhh
Confidence 5899999999975 55 46999999987 888888888877654
No 210
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=294.70 Aligned_cols=188 Identities=26% Similarity=0.352 Sum_probs=153.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHcc-CCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLT-MDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~-~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.....++.++|++|++.+. ...++.+|+.+..... ........
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 117 (272)
T PRK15056 39 VGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK 117 (272)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCH
Confidence 59999999999999999998 79999999999875322234589999997653 2346888876532110 00001112
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
...+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.|+|+
T Consensus 118 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tvii 197 (272)
T PRK15056 118 RDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLV 197 (272)
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 23456788999999998899999999999999999999999999999999999999999999999999999877899999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+||+.. .+.++||+++++ + |+++..|+++++.
T Consensus 198 vsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~~~~ 229 (272)
T PRK15056 198 STHNLG-SVTEFCDYTVMV-K-GTVLASGPTETTF 229 (272)
T ss_pred EeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHhcc
Confidence 999974 688999999766 6 8888889888754
No 211
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=317.28 Aligned_cols=188 Identities=21% Similarity=0.315 Sum_probs=158.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHHccC-C-
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAKLTM-D- 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~-~- 71 (197)
+||||||||||+|+|+|+.+ |++|+|.++|+++... ..++.+||++|++ .+++.+||.||+.+...... .
T Consensus 284 iG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 362 (501)
T PRK10762 284 SGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362 (501)
T ss_pred ecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc
Confidence 69999999999999999998 7999999999987532 1345699999996 57888999999987532110 0
Q ss_pred -ccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 72 -RRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 72 -~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.........+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 442 (501)
T PRK10762 363 GGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK 442 (501)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence 0011223345688999999995 67899999999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
++|.|+|++||+.. .+..+||++++|++ |+++..++++++
T Consensus 443 ~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 443 AEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred HCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 78999999999974 78999999999987 888888877665
No 212
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-44 Score=283.74 Aligned_cols=170 Identities=25% Similarity=0.317 Sum_probs=149.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++.....++.++|++|++.+++.+|+.||+.+...... . ...
T Consensus 43 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~ 115 (214)
T PRK13543 43 QGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAK 115 (214)
T ss_pred EcCCCCCHHHHHHHHhCCCC-CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHH
Confidence 59999999999999999998 7999999999988643334568999999999999999999988654321 1 123
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++.+++.+..++++.+||+|||||++||||++.+|++|||||||++||+.+++.+.++|+++++++.|+|++||
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195 (214)
T ss_pred HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45678999999998889999999999999999999999999999999999999999999999999999888899999999
Q ss_pred CCcchHHhhcCeEEEEeC
Q psy4235 161 QPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~ 178 (197)
+.. .+.++||+++++..
T Consensus 196 ~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 196 GAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred Chh-hhhhhcceEEEEee
Confidence 975 78999999998853
No 213
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-44 Score=289.61 Aligned_cols=186 Identities=25% Similarity=0.412 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+|+||||||||+|+|+|+++| +++|+|+++|+++.. ..+++.++|++|++.++ .+|+.||+.+.......
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~ 118 (261)
T PRK14263 40 IGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY 118 (261)
T ss_pred ECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc
Confidence 599999999999999999873 379999999998742 12346699999999887 58999999987543211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.....+.+.++++.+++.+ ..++++.+||+||+||++|||||+.+|++|||||||+|||+.++.++.+.|++
T Consensus 119 ----~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~ 194 (261)
T PRK14263 119 ----KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194 (261)
T ss_pred ----hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 1123457888999999853 34678899999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEe-------CCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLA-------HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~-------~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||++. .+..+||++++|+ ++|++++.|+++++++
T Consensus 195 ~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 195 LKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred Hhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 964 689999999974 6889999999996 3499999999988754
No 214
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.8e-44 Score=317.23 Aligned_cols=188 Identities=23% Similarity=0.337 Sum_probs=158.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCccc------cc-ceEEEEecCCC--CCCCCCHHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISRTV------MS-RISGYVAQQDF--LIEELTVLEHLQFMAK 67 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~~~------~~-~~~~~v~q~~~--~~~~ltv~e~l~~~~~ 67 (197)
+||||||||||+|+|+|+++| |++|+|.++|+++.... .+ +.+||+||++. +++.+|+.+|+.+...
T Consensus 41 iG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~ 120 (529)
T PRK15134 41 VGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS 120 (529)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHH
Confidence 699999999999999999973 27999999999874321 12 46999999974 6777899999886543
Q ss_pred ccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 68 LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
... ........+++.++++.++|.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++
T Consensus 121 ~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~ 198 (529)
T PRK15134 121 LHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL 198 (529)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH
Confidence 211 1122344577889999999975 46889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
|++++++ +.|+|++||+.. .+..+||++++|++ |+++..|++++++
T Consensus 199 l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~~~~ 245 (529)
T PRK15134 199 LRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRAATLF 245 (529)
T ss_pred HHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999865 899999999974 78889999999997 8888889888764
No 215
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.8e-45 Score=328.60 Aligned_cols=188 Identities=32% Similarity=0.445 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+|+|+|++. |++|+|++||.|+.. ..+|+.+|||+|++.+|.. |++||+.++......+.....
T Consensus 505 vG~SGsGKSTL~KLL~gly~-p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A 582 (709)
T COG2274 505 VGRSGSGKSTLLKLLLGLYK-PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEA 582 (709)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHH
Confidence 69999999999999999999 799999999999854 4578899999999999998 999999986432211111111
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.+..+ |++........+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|.++. +|+|+
T Consensus 583 ~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~ 661 (709)
T COG2274 583 AQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTV 661 (709)
T ss_pred HHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeE
Confidence 1122344455544 44556667788999999999999999999999999999999999999999999999986 47999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|+++|++. ..+.|||+++|++ |+++.+|+.+|++..
T Consensus 662 I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~ell~~ 697 (709)
T COG2274 662 IIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHEELLAQ 697 (709)
T ss_pred EEEEccch--HhhhccEEEEccC-CceeccCCHHHHHHh
Confidence 99999974 5789999999987 999999999998764
No 216
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-46 Score=281.91 Aligned_cols=189 Identities=24% Similarity=0.374 Sum_probs=171.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
||||||||||||.+++.+++ .++|+|+++|.++.. ..+.+.++.+-|+..+...+||+|-+.|+..-+. ......
T Consensus 33 IGPNGAGKSTLLS~~sRL~~-~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~ 110 (252)
T COG4604 33 IGPNGAGKSTLLSMMSRLLK-KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTK 110 (252)
T ss_pred ECCCCccHHHHHHHHHHhcc-ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCch
Confidence 69999999999999999888 799999999999864 3466788999999999999999999998754333 333455
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI 156 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ii 156 (197)
+.+..+++.++.++|.+..+++..+||||||||..||+.++++.+.++||||.++||.....++++.|++++++ |+||+
T Consensus 111 eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktiv 190 (252)
T COG4604 111 EDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV 190 (252)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999987 99999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++.||.+ ++..++|.++-|++ |+++..|+++|+++
T Consensus 191 iVlHDIN-fAS~YsD~IVAlK~-G~vv~~G~~~eii~ 225 (252)
T COG4604 191 VVLHDIN-FASCYSDHIVALKN-GKVVKQGSPDEIIQ 225 (252)
T ss_pred EEEeccc-HHHhhhhheeeecC-CEEEecCCHHHhcC
Confidence 9999986 89999999999998 99999999998764
No 217
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=290.40 Aligned_cols=185 Identities=22% Similarity=0.378 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|+|+|++.+ |++|+|+++|.++.. ...++.++|++|++.+++. |+.||+.+.......
T Consensus 42 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~ 120 (264)
T PRK14243 42 IGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGY 120 (264)
T ss_pred ECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCc
Confidence 599999999999999998752 379999999998742 2235669999999988884 999999886532211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
. ....+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 121 ---~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 196 (264)
T PRK14243 121 ---K-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE 196 (264)
T ss_pred ---c-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 1 12234566778887773 356788999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEe---------CCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLA---------HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~---------~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|||++||+.. .+.++||++++|+ + |++++.|+++++..
T Consensus 197 ~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~-g~i~~~~~~~~~~~ 248 (264)
T PRK14243 197 LKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRY-GYLVEFDRTEKIFN 248 (264)
T ss_pred Hhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCHHHHHh
Confidence 976 489999999974 7899999999998 5 89999999988753
No 218
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.4e-44 Score=316.56 Aligned_cols=187 Identities=25% Similarity=0.337 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHH--ccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAK--LTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~--~~~~ 71 (197)
+||||||||||+|+|+|+++|+++|+|+++|+++... ..++.++|++|++ .+++.+||.+|+.+... ....
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~ 371 (500)
T TIGR02633 292 AGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK 371 (500)
T ss_pred eCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccC
Confidence 6999999999999999998744899999999987531 2345689999995 58899999999987532 1100
Q ss_pred ccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 72 RRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
........++.+.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++++
T Consensus 372 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 451 (500)
T TIGR02633 372 MRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451 (500)
T ss_pred CcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh
Confidence 01112233467889999999974 68999999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVS 189 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~ 189 (197)
+|.|||++|||.. ++..+||++++|++ |+++...+.+
T Consensus 452 ~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 452 EGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 8999999999974 78899999999987 8887766544
No 219
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=317.61 Aligned_cols=188 Identities=21% Similarity=0.292 Sum_probs=158.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHHccCCc-
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAKLTMDR- 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~~~- 72 (197)
+||||||||||+|+|+|+.+ |++|+|+++|+++... ..++.++|++|++ .+++.+|+.||+.+........
T Consensus 285 iG~NGsGKSTLlk~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 363 (501)
T PRK11288 285 FGLVGAGRSELMKLLYGATR-RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRA 363 (501)
T ss_pred EcCCCCCHHHHHHHHcCCCc-CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccc
Confidence 69999999999999999998 7999999999987421 1235689999986 4888899999998743211000
Q ss_pred c--ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 73 R--TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 73 ~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
. ......++.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++++
T Consensus 364 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 443 (501)
T PRK11288 364 GCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA 443 (501)
T ss_pred ccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH
Confidence 0 01122335678999999994 67899999999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
++|.+||++|||.. ++.++||++++|.+ |++++.|++++.
T Consensus 444 ~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 444 AQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred hCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 88999999999974 78999999999987 888888877653
No 220
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.7e-44 Score=347.55 Aligned_cols=190 Identities=25% Similarity=0.374 Sum_probs=169.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++.. ...++.+||+||++.+++.+||+||+.+.+..+.. ..+.
T Consensus 1971 LG~NGAGKTTLlkmL~Gll~-ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~---~~~~ 2046 (2272)
T TIGR01257 1971 LGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV---PAEE 2046 (2272)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC---CHHH
Confidence 69999999999999999998 799999999999853 22456799999999999999999999987655321 2233
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.++.++++++.++|.+..++++++||||||||++||+||+.+|++|||||||+||||.+++.++++|++++++|++||++
T Consensus 2047 ~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILt 2126 (2272)
T TIGR01257 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126 (2272)
T ss_pred HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999998789999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
||++ +++..+|||+++|.+ |++...|+++++...|.
T Consensus 2127 TH~m-ee~e~lcDrV~IL~~-G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2127 SHSM-EECEALCTRLAIMVK-GAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred eCCH-HHHHHhCCEEEEEEC-CEEEEECCHHHHHHHhC
Confidence 9997 479999999999997 99999999999987653
No 221
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=286.41 Aligned_cols=187 Identities=24% Similarity=0.355 Sum_probs=153.7
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CC---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GL---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.+ .| ++|+|.++|+++.. ..+++.++|++|++.+++ .|+.+|+.+.......
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~ 115 (252)
T PRK14255 37 IGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV 115 (252)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC
Confidence 59999999999999999864 13 58999999998742 123467999999998888 6999999886432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
. ......+.+.+.++.+++. +..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 116 ~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14255 116 K--DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193 (252)
T ss_pred C--CHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 1 1112234566778887763 456889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+..+||++++|++ |+++..|++.++..
T Consensus 194 ~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 236 (252)
T PRK14255 194 LRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADTKQMFL 236 (252)
T ss_pred HHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 976 489999999974 78899999999987 88988898887653
No 222
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=288.09 Aligned_cols=188 Identities=25% Similarity=0.395 Sum_probs=157.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc-----eeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~-----~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
+|+||||||||+++|+|+++ |+ +|+|.++|+++.. ..+++.++|++|++.+++ +|+.||+.+......
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~ 116 (261)
T PRK14258 39 IGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG 116 (261)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC
Confidence 59999999999999999988 54 8999999998732 123566999999988888 899999987643221
Q ss_pred CccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
. .......+.+.++++.+++. +..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+
T Consensus 117 ~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~ 194 (261)
T PRK14258 117 W--RPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ 194 (261)
T ss_pred C--CcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0 11223345678899999874 35688899999999999999999999999999999999999999999999999
Q ss_pred HHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCC----cEEEEecChhHHHh
Q psy4235 147 QLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHG----GLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~g----g~i~~~g~~~~~~~ 193 (197)
+++. ++.|+|++||++. .+.++||++++|+++ |+++..|+++++..
T Consensus 195 ~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 195 SLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred HHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence 9875 4899999999974 788999999999863 78888899988753
No 223
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.4e-44 Score=316.23 Aligned_cols=189 Identities=22% Similarity=0.265 Sum_probs=157.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCC---CCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQD---FLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+.+ |++|+|+++|.++.... .++.++|+||++ .+++.+|+.+|+...........
T Consensus 295 ~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~ 373 (510)
T PRK15439 295 AGVVGAGRTELAETLYGLRP-ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW 373 (510)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccc
Confidence 69999999999999999988 79999999999875321 234689999984 48888999999864311100000
Q ss_pred ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235 74 TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 152 (197)
......++.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++|
T Consensus 374 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g 453 (510)
T PRK15439 374 IKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN 453 (510)
T ss_pred cChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC
Confidence 01122345688999999997 78899999999999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
.+||++|||.. ++.++||++++|++ |+++..|+++++.
T Consensus 454 ~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~~~ 491 (510)
T PRK15439 454 VAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAAIN 491 (510)
T ss_pred CEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccccCC
Confidence 99999999974 78999999999987 8888888776543
No 224
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=286.72 Aligned_cols=186 Identities=24% Similarity=0.402 Sum_probs=155.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCcc-----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISRT-----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+..+ | ++|+|.++|+++... ..++.++|++|++.+++. ||+||+.+.......
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~ 116 (253)
T PRK14261 38 IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE 116 (253)
T ss_pred ECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC
Confidence 599999999999999998652 2 489999999987531 234569999999988885 999999986543211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
......++.+.++++.+++. +..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|++
T Consensus 117 --~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 194 (253)
T PRK14261 117 --KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194 (253)
T ss_pred --CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11223345677888888874 356889999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++ +.|+|++||+.. .+.+.||++++|++ |+++..|+++++.
T Consensus 195 ~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 236 (253)
T PRK14261 195 LKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKTTQIF 236 (253)
T ss_pred Hhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCHHHHH
Confidence 975 589999999974 67889999999987 8888889988775
No 225
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5.8e-44 Score=277.59 Aligned_cols=159 Identities=27% Similarity=0.419 Sum_probs=135.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+++.++|++|++. .+...||.||+.+...... .
T Consensus 24 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~---~ 99 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG---L 99 (190)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC---C
Confidence 59999999999999999998 7999999999987421 23456899999973 2334699999988643221 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+.+.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.++|+++++++.+
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 179 (190)
T TIGR01166 100 SEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179 (190)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 22334457889999999998899999999999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCCc
Q psy4235 155 VICAIHQPT 163 (197)
Q Consensus 155 iii~th~~~ 163 (197)
+|++||++.
T Consensus 180 ili~sH~~~ 188 (190)
T TIGR01166 180 VVISTHDVD 188 (190)
T ss_pred EEEEeeccc
Confidence 999999964
No 226
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=296.43 Aligned_cols=187 Identities=23% Similarity=0.351 Sum_probs=156.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.++ |++|+|.++|.++.. ..+++.++|+||++.+|+ .|++||+.|......
T Consensus 114 vG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~- 191 (329)
T PRK14257 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG- 191 (329)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC-
Confidence 599999999999999999752 479999999999852 234567999999999886 699999998643221
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
........+.+.++++.+++. ...++++.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|++
T Consensus 192 -~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~ 270 (329)
T PRK14257 192 -INDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE 270 (329)
T ss_pred -CChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111122234467788888763 456789999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.+ +.|+|++||++. .+.++||++++|++ |++++.|++++++.
T Consensus 271 l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~e~g~~~~l~~ 313 (329)
T PRK14257 271 LKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIEEAGETKTIFI 313 (329)
T ss_pred Hhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 875 689999999974 67888999999987 99999999999864
No 227
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6e-44 Score=280.48 Aligned_cols=168 Identities=32% Similarity=0.389 Sum_probs=146.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+....... .
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~ 105 (204)
T PRK13538 33 EGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP------G 105 (204)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc------c
Confidence 59999999999999999998 799999999998753 22446689999999999999999999887543211 1
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.++|+++++++.|+|++
T Consensus 106 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~ 185 (204)
T PRK13538 106 DDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT 185 (204)
T ss_pred HHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 23568889999999888899999999999999999999999999999999999999999999999999998778999999
Q ss_pred ecCCcchHHhhcCeEEEE
Q psy4235 159 IHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l 176 (197)
||+.. .+..+.+|++++
T Consensus 186 sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 186 THQDL-PVASDKVRKLRL 202 (204)
T ss_pred ecChh-hhccCCceEEec
Confidence 99975 676766777665
No 228
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-44 Score=288.00 Aligned_cols=187 Identities=25% Similarity=0.386 Sum_probs=148.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+.+ |++|+|.++|.++.. ..+++.++|++|++.+++ .|+.||+.++............
T Consensus 33 ~G~nGsGKSTLl~~i~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~ 110 (236)
T cd03253 33 VGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEA 110 (236)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHH
Confidence 59999999999999999988 799999999998753 233456999999998886 5999999875321100000000
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.++.+ ++....++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.++
T Consensus 111 ~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ti 189 (236)
T cd03253 111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTT 189 (236)
T ss_pred HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEE
Confidence 0001223444444 555666778899999999999999999999999999999999999999999999999976 8999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. .+. .||++++|++ |+++..|+.+++..
T Consensus 190 ii~sh~~~-~~~-~~d~~~~l~~-g~i~~~~~~~~~~~ 224 (236)
T cd03253 190 IVIAHRLS-TIV-NADKIIVLKD-GRIVERGTHEELLA 224 (236)
T ss_pred EEEcCCHH-HHH-hCCEEEEEEC-CEEEeeCCHHHHhh
Confidence 99999975 554 5999999998 88888888877654
No 229
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=278.71 Aligned_cols=159 Identities=31% Similarity=0.509 Sum_probs=136.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|++++ |++|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------- 111 (202)
T cd03233 39 LGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------- 111 (202)
T ss_pred ECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc-------
Confidence 699999999999999999873 5899999999987542 34567999999999999999999998653110
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
.++++..||+||+||++|||||+.+|++|||||||++||+.+++.+.+.|++++++ +.++
T Consensus 112 -------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ 172 (202)
T cd03233 112 -------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT 172 (202)
T ss_pred -------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 56778899999999999999999999999999999999999999999999999765 5677
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
|+++||..+.+.+.||++++|++ |+++..|
T Consensus 173 ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 173 FVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred EEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 77777654568899999999998 8887543
No 230
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=285.51 Aligned_cols=186 Identities=20% Similarity=0.373 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHhcCcC--C--CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK--G--LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~--~--~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.. + |++|+|.++|.++.. ...++.++|+||++.+|+. |+.||+.+......
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~- 112 (250)
T PRK14266 35 IGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG- 112 (250)
T ss_pred ECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC-
Confidence 59999999999999999863 2 389999999998743 1235679999999998885 99999987643221
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......++.+.++++.+++. +..++++.+||+|||||++|||||+.+|++|||||||+|||+.++..+.++|++
T Consensus 113 -~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 113 -EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred -CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 111223456788899999874 346788999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++ +.|+|++||+.. .+...||++++|++ |++++.|+++++.
T Consensus 192 ~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~~~~~ 233 (250)
T PRK14266 192 LKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLTDQIF 233 (250)
T ss_pred Hhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCHHHHH
Confidence 964 789999999974 78999999999987 8998999998875
No 231
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.1e-44 Score=284.89 Aligned_cols=170 Identities=32% Similarity=0.480 Sum_probs=142.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+.+ |++|+|.++|.++.. ...++.++|++|++.+++ .|+.||+.+.... ..
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~-- 106 (220)
T cd03245 36 IGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD-- 106 (220)
T ss_pred ECCCCCCHHHHHHHHhcCcC-CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC--
Confidence 59999999999999999988 799999999998743 123456899999998887 5999998764211 01
Q ss_pred HHHHHHHHHHHHcCCccccccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRRQVQ-----------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
...+.++++.+++.+..++. +.+||||||||++||||++.+|++|||||||+|||+.++..+.+.|+
T Consensus 107 --~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 107 --DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184 (220)
T ss_pred --HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 23456778888887666654 46999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
+++++ .|+|++||+.. .+ ++||+++++++ |++++.
T Consensus 185 ~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~-g~i~~~ 219 (220)
T cd03245 185 QLLGD-KTLIIITHRPS-LL-DLVDRIIVMDS-GRIVAD 219 (220)
T ss_pred HhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeC-CeEeec
Confidence 98764 89999999975 44 79999999987 777654
No 232
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8.9e-44 Score=283.50 Aligned_cols=178 Identities=26% Similarity=0.398 Sum_probs=147.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+.+ |++|+|.++|.++... .+++.++|++|++.+++. |+.||+.+....... .
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~-- 111 (225)
T PRK10247 39 TGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---Q-- 111 (225)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcCC---C--
Confidence 59999999999999999988 7999999999987532 234678999999988875 999999875433211 1
Q ss_pred HHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q psy4235 78 ELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~i 155 (197)
...+.+.++++.+++. ...++++.+||+||+||++|||||+.+|+++||||||++||+.+++.+.++|++++++ +.++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 191 (225)
T PRK10247 112 PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAV 191 (225)
T ss_pred hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1234577899999996 5789999999999999999999999999999999999999999999999999998764 8899
Q ss_pred EEEecCCcchHHhhcCeEEEEe-CCcEEEEecCh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLA-HGGLLAYHGQV 188 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~-~gg~i~~~g~~ 188 (197)
|++||+.. .+ ..||++++|+ ++|++ .+|+.
T Consensus 192 ii~sh~~~-~~-~~~d~i~~l~~~~~~~-~~~~~ 222 (225)
T PRK10247 192 LWVTHDKD-EI-NHADKVITLQPHAGEM-QEARY 222 (225)
T ss_pred EEEECChH-HH-HhCCEEEEEecccchH-hhhhh
Confidence 99999975 55 4699999996 43444 44543
No 233
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.2e-44 Score=320.42 Aligned_cols=181 Identities=28% Similarity=0.387 Sum_probs=149.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|++ | ++|+|.+||.++.. ..+++.++||+|++.+|+. |++||+.++... ...+
T Consensus 382 vG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~-----~~~e 453 (588)
T PRK11174 382 VGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPD-----ASDE 453 (588)
T ss_pred ECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCCC-----CCHH
Confidence 6999999999999999998 4 79999999999854 3567889999999999987 999999986321 1111
Q ss_pred HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+ .+++.++.+ |++.........||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~- 532 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS- 532 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-
Confidence 1111 223344444 45555555667899999999999999999999999999999999999999999999885
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++|+|++||++. ....||+|++|++ |++++.|+.+++++
T Consensus 533 ~~~TvIiItHrl~--~i~~aD~Iivl~~-G~i~e~G~~~eL~~ 572 (588)
T PRK11174 533 RRQTTLMVTHQLE--DLAQWDQIWVMQD-GQIVQQGDYAELSQ 572 (588)
T ss_pred CCCEEEEEecChH--HHHhCCEEEEEeC-CeEeecCCHHHHHh
Confidence 4789999999973 4677999999987 99999999999874
No 234
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.5e-43 Score=284.23 Aligned_cols=187 Identities=21% Similarity=0.278 Sum_probs=153.7
Q ss_pred CCCCCCcHHHHHHHHhcC--cCCCceeEEEECCeeCCcc---cccc-eEEEEecCCCCCCCCCHHHHHHHHHHccCC---
Q psy4235 1 MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRT---VMSR-ISGYVAQQDFLIEELTVLEHLQFMAKLTMD--- 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~--~~~~~~G~i~~~g~~~~~~---~~~~-~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~--- 71 (197)
+|+||||||||+++|+|+ ++ |++|+|+++|.++... ..++ .++|++|++.+++.+|+.+|+.+.......
T Consensus 39 ~G~nGsGKSTLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~ 117 (252)
T CHL00131 39 MGPNGSGKSTLSKVIAGHPAYK-ILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQG 117 (252)
T ss_pred ECCCCCCHHHHHHHHcCCCcCc-CCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccc
Confidence 599999999999999997 35 7999999999987532 1222 478999999999999999999875432100
Q ss_pred -ccccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 72 -RRTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 72 -~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
.........+.+.++++.+++. ...++++. .|||||+||++|||||+.+|++|||||||++||+.+++.+.++|+++
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (252)
T CHL00131 118 LPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL 197 (252)
T ss_pred cccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0011122345678899999997 46788887 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhH
Q psy4235 149 ACESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~ 190 (197)
++++.|+|++||+.. .+... ||++++|++ |++++.|+++.
T Consensus 198 ~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~-G~i~~~~~~~~ 238 (252)
T CHL00131 198 MTSENSIILITHYQR-LLDYIKPDYVHVMQN-GKIIKTGDAEL 238 (252)
T ss_pred HhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-CEEEEecChhh
Confidence 877899999999974 56666 899999987 89989998863
No 235
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-43 Score=339.64 Aligned_cols=195 Identities=38% Similarity=0.643 Sum_probs=168.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||||+|+|+.++ +++|+|.+||+++.. .+++.+|||+|++.+++.+||+||+.|.+..+........+
T Consensus 795 ~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~ 873 (1394)
T TIGR00956 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE 873 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHH
Confidence 699999999999999999862 478999999999853 45677999999998999999999999987654322223334
Q ss_pred HHHHHHHHHHHcCCcccccccCC----CCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 79 LNKTITRVMENLGINHRRQVQIS----GLSGGQRKRLALAVQLLTEPQ-ILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~----~LSgGq~qrv~ia~al~~~p~-llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
..+.++++++.++|.+.+++.++ +||||||||++||++|+.+|+ +|||||||+|||+.++..+.+.|++++++|+
T Consensus 874 ~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~ 953 (1394)
T TIGR00956 874 KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ 953 (1394)
T ss_pred HHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999998998887 799999999999999999997 9999999999999999999999999988899
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecCh----hHHHhhhh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV----SKVLKHFA 196 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~----~~~~~~~~ 196 (197)
|||+++|++...+.+.||++++|++||++++.|++ +++.++|.
T Consensus 954 tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~ 1000 (1394)
T TIGR00956 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE 1000 (1394)
T ss_pred EEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHH
Confidence 99999999875456889999999986699999987 44566553
No 236
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-43 Score=306.80 Aligned_cols=191 Identities=27% Similarity=0.376 Sum_probs=165.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC---ceeEEEECCeeCCc---c----cccceEEEEecCC--CCCCCCCHHHHHHHHHHc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISR---T----VMSRISGYVAQQD--FLIEELTVLEHLQFMAKL 68 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~---~~G~i~~~g~~~~~---~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~ 68 (197)
+|.|||||||+.++|.|++++. .+|+|.|+|.++.. . .+.+.|+|+||++ .+.|-+|+.+.+.-....
T Consensus 41 vGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~ 120 (539)
T COG1123 41 VGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL 120 (539)
T ss_pred EcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH
Confidence 6999999999999999999843 38999999998632 1 1235799999996 466779999999887766
Q ss_pred cCCccccHHHHHHHHHHHHHHcCCccccc--ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 69 TMDRRTTWLELNKTITRVMENLGINHRRQ--VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
+... ..++.++++.++|+.++|.+... ++|.+|||||||||.||+||+.+|++||+||||++||+..+.+|+++|+
T Consensus 121 h~~~--~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk 198 (539)
T COG1123 121 HGKG--SRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLK 198 (539)
T ss_pred hccc--cHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHH
Confidence 5421 25567788999999999986654 4999999999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 147 QLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 147 ~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
++.++ |.++|++|||+ ..+.++|||++||.+ |++++.|++++++..+
T Consensus 199 ~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~-G~iVE~G~~~~i~~~p 246 (539)
T COG1123 199 DLQRELGMAVLFITHDL-GVVAELADRVVVMYK-GEIVETGPTEEILSNP 246 (539)
T ss_pred HHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEEC-CEEEEecCHHHHHhcc
Confidence 99854 89999999997 589999999999998 9999999999998753
No 237
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-43 Score=343.87 Aligned_cols=189 Identities=28% Similarity=0.498 Sum_probs=168.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... ..++.+||+||++.+++.+||+||+.++...+.. ...+
T Consensus 962 LG~NGAGKSTLLkiLaGLl~-PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~---~~~~ 1037 (2272)
T TIGR01257 962 LGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR---SWEE 1037 (2272)
T ss_pred ECCCCChHHHHHHHHhcCCC-CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC---CHHH
Confidence 69999999999999999998 7999999999998532 3456799999999999999999999997665321 2234
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.+++++++++.++|.+..++++++||||||||++||+||+.+|++|||||||+|||+.+++.+.++|++++ +|++||++
T Consensus 1038 ~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIlt 1116 (2272)
T TIGR01257 1038 AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMS 1116 (2272)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999995 58999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
||++. ++..+|||+++|++ |+++..|++.++.+.|.
T Consensus 1117 THdmd-ea~~laDrI~iL~~-GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1117 THHMD-EADLLGDRIAIISQ-GRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred ECCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHHHhcC
Confidence 99974 78899999999997 89999999999887653
No 238
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=288.82 Aligned_cols=186 Identities=24% Similarity=0.353 Sum_probs=153.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.++ | ++|+|.++|+++.. ..+++.++|+||++.+++. |+.||+.+.......
T Consensus 52 iG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~ 130 (274)
T PRK14265 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGY 130 (274)
T ss_pred ECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCc
Confidence 599999999999999999752 2 68999999998742 1235679999999988875 999999876432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
. ....+.+.+.++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 131 ---~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 131 ---K-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred ---h-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1 11234466778887763 456789999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEe--------CCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLA--------HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~--------~gg~i~~~g~~~~~~~ 193 (197)
+++ +.+||++||+.. .+..+||++++|+ ..|+++..|+++++..
T Consensus 207 ~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 207 LKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFG 258 (274)
T ss_pred Hhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHHh
Confidence 975 689999999974 7889999999997 1489999999988753
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.1e-43 Score=278.47 Aligned_cols=165 Identities=29% Similarity=0.403 Sum_probs=145.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+|+||||||||+++|+|+++ |++|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+.....
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--------- 101 (201)
T cd03231 32 TGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH--------- 101 (201)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccc---------
Confidence 59999999999999999988 799999999998743 234567999999999998999999998753210
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus 102 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~ 181 (201)
T cd03231 102 SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181 (201)
T ss_pred cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 23567889999999988899999999999999999999999999999999999999999999999999988778999999
Q ss_pred ecCCcchHHhhcCeEEEE
Q psy4235 159 IHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l 176 (197)
||++. .....|++++++
T Consensus 182 sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 182 THQDL-GLSEAGARELDL 198 (201)
T ss_pred ecCch-hhhhccceeEec
Confidence 99975 678899999876
No 240
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-43 Score=339.30 Aligned_cols=196 Identities=38% Similarity=0.644 Sum_probs=168.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+.++ +.+|+|.++|.+......++.+||++|++.+++.+||+||+.|.+..+........+.
T Consensus 912 ~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~ 991 (1470)
T PLN03140 912 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEK 991 (1470)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHH
Confidence 699999999999999998652 3689999999987544455678999999999999999999999865442222233344
Q ss_pred HHHHHHHHHHcCCcccccccC-----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 80 NKTITRVMENLGINHRRQVQI-----SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
.+.++++++.++|.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus 992 ~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~t 1071 (1470)
T PLN03140 992 MMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071 (1470)
T ss_pred HHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 567899999999998888876 589999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecCh----hHHHhhhh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV----SKVLKHFA 196 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~----~~~~~~~~ 196 (197)
||+++|++...+.+.||++++|++||++++.|++ +++.++|+
T Consensus 1072 VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~ 1117 (1470)
T PLN03140 1072 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFE 1117 (1470)
T ss_pred EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHH
Confidence 9999999864578999999999877899999986 45666664
No 241
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-44 Score=265.62 Aligned_cols=185 Identities=28% Similarity=0.337 Sum_probs=161.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--c-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--R-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+|.+.=+.- |.+|+..|-|...+ . ..+++.+|+|||+-.++|.+||.||+......-
T Consensus 34 lgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv-- 110 (242)
T COG4161 34 LGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRV-- 110 (242)
T ss_pred ECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHH--
Confidence 59999999999999986555 79999999887653 1 135677999999999999999999997643211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
...+..+...++.++++++.|.+++++.|-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|+++...
T Consensus 111 ~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t 190 (242)
T COG4161 111 LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET 190 (242)
T ss_pred hCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc
Confidence 12334556678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
|.|-+++||... .+.+.+.+|++|++ |+|++.|+.+-
T Consensus 191 gitqvivthev~-va~k~as~vvyme~-g~ive~g~a~~ 227 (242)
T COG4161 191 GITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDASC 227 (242)
T ss_pred CceEEEEEeehh-HHHhhhhheEeeec-CeeEeecchhh
Confidence 999999999974 78999999999998 99999887653
No 242
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-43 Score=284.28 Aligned_cols=179 Identities=19% Similarity=0.263 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|.++|. +++++|.+.+++.+|+.+|+.+...... .......
T Consensus 56 iG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~ 121 (264)
T PRK13546 56 VGINGSGKSTLSNIIGGSLS-PTVGKVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCMG---FKRKEIK 121 (264)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCceEEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHcC---CCHHHHH
Confidence 69999999999999999998 79999999985 3567787777888999999987543221 1223344
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+..+++.+++.+..++++.+||+||+||++|||||+.+|++|||||||++||+.++..+.+.|.++++++.|+|++||
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 122 AMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 56778889999998899999999999999999999999999999999999999999999999999999877899999999
Q ss_pred CCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
+.. .+..+||++++|++ |++...|+++++...+
T Consensus 202 ~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 202 NLG-QVRQFCTKIAWIEG-GKLKDYGELDDVLPKY 234 (264)
T ss_pred CHH-HHHHHcCEEEEEEC-CEEEEeCCHHHHHHHh
Confidence 974 67889999999987 8888899998876543
No 243
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.4e-43 Score=275.21 Aligned_cols=151 Identities=53% Similarity=0.857 Sum_probs=134.0
Q ss_pred CCCCCCcHHHHHHHHhcCc--CCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRV--KGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~--~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|++ + |++|+|.++|+++.....++.++|++|++.+++.+|+.||+.+....
T Consensus 41 ~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------- 109 (194)
T cd03213 41 MGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------- 109 (194)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh----------
Confidence 5999999999999999998 7 79999999999986544456799999999999999999999764210
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
. +||+||+||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus 110 -----~-----------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 167 (194)
T cd03213 110 -----R-----------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167 (194)
T ss_pred -----c-----------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 799999999999999999999999999999999999999999999998778999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
||++...+...||++++|++ |++++.
T Consensus 168 sh~~~~~~~~~~d~v~~l~~-G~i~~~ 193 (194)
T cd03213 168 IHQPSSEIFELFDKLLLLSQ-GRVIYF 193 (194)
T ss_pred ecCchHHHHHhcCEEEEEeC-CEEEec
Confidence 99974357789999999987 887654
No 244
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-44 Score=274.36 Aligned_cols=189 Identities=29% Similarity=0.363 Sum_probs=164.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||||.|+|.+. |++|++.++|.+++.. .+.+.-+.+||+..+-+.+||.|-+.++..-+.. .....
T Consensus 33 lGPNGAGKSTlLk~LsGel~-p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~ 110 (259)
T COG4559 33 LGPNGAGKSTLLKALSGELS-PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPE 110 (259)
T ss_pred ECCCCccHHHHHHHhhCccC-CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCch
Confidence 69999999999999999998 7999999999998643 3455669999998877677999999997643321 11222
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT------EPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
+..+.+.++|...++..+..+...+|||||||||.+||.|++ ++++|+||||||+||...+..++++.++++++
T Consensus 111 e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~ 190 (259)
T COG4559 111 EDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190 (259)
T ss_pred hhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc
Confidence 445668899999999999999999999999999999999985 45689999999999999999999999999999
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|..|+.+-||.+ .+..+|||+++|++ |+++..|+|++++.
T Consensus 191 g~~V~~VLHDLN-LAA~YaDrivll~~-Grv~a~g~p~~vlt 230 (259)
T COG4559 191 GGAVLAVLHDLN-LAAQYADRIVLLHQ-GRVIASGSPQDVLT 230 (259)
T ss_pred CCcEEEEEccch-HHHHhhheeeeeeC-CeEeecCCHHHhcC
Confidence 999999999986 78999999999987 99999999998764
No 245
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-43 Score=284.59 Aligned_cols=187 Identities=28% Similarity=0.438 Sum_probs=155.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECC------eeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG------CPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g------~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.+ |++|+|.++| .++.. ..+++.++|++|++.+++.+|+.+|+.+.......
T Consensus 42 ~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~ 120 (257)
T PRK14246 42 MGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI 120 (257)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC
Confidence 59999999999999999988 6886666655 44422 12356799999999999999999999986432211
Q ss_pred ccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.......+.+.++++.+++. +..++.+..||+|||||++|||||+.+|+++||||||++||+.++..+.+.|++
T Consensus 121 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~ 198 (257)
T PRK14246 121 --KEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198 (257)
T ss_pred --CCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 11223446688899999985 356789999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ +.|+|++||+.. .+...||++++|++ |+++..|+++++..
T Consensus 199 ~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~~~~~~ 241 (257)
T PRK14246 199 LKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSSNEIFT 241 (257)
T ss_pred Hhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 865 689999999974 67799999999987 89988999887754
No 246
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.1e-43 Score=279.59 Aligned_cols=171 Identities=25% Similarity=0.314 Sum_probs=144.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|+++|+++.. ..+...+++.+||.||+.+...... .......
T Consensus 54 ~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~ 120 (224)
T cd03220 54 IGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSL---------LGLGGGFNPELTGRENIYLNGRLLG---LSRKEID 120 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchh---------hcccccCCCCCcHHHHHHHHHHHcC---CCHHHHH
Confidence 59999999999999999988 799999999987531 1112345567899999988654321 1122334
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++++++.|+|++||
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH 200 (224)
T cd03220 121 EKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200 (224)
T ss_pred HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56788999999998899999999999999999999999999999999999999999999999999999877889999999
Q ss_pred CCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
+.. .+..+||++++|++ |+++..|
T Consensus 201 ~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 201 DPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 974 67889999999987 8886643
No 247
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.8e-43 Score=280.15 Aligned_cols=171 Identities=25% Similarity=0.309 Sum_probs=143.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEEC--Ce--eCCcc---c----ccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN--GC--PISRT---V----MSRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~--g~--~~~~~---~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
+||||||||||+++|+|+++ |++|+|.++ |. ++... . .++.++|++|++.+++.+||.||+.+.....
T Consensus 40 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 118 (224)
T TIGR02324 40 SGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER 118 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc
Confidence 59999999999999999998 799999998 43 43211 1 1346899999999999999999998754322
Q ss_pred CCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 70 MDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
. .......+.+.++++.+++.+ ..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++
T Consensus 119 ~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (224)
T TIGR02324 119 G---VPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA 195 (224)
T ss_pred C---CCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 1 112233457788999999976 457899999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l 176 (197)
++++.|+|++||+. +.+..+||+++.+
T Consensus 196 ~~~g~tii~vsH~~-~~~~~~~d~i~~~ 222 (224)
T TIGR02324 196 KARGAALIGIFHDE-EVRELVADRVMDV 222 (224)
T ss_pred HhcCCEEEEEeCCH-HHHHHhcceeEec
Confidence 87789999999996 4677899999876
No 248
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=304.10 Aligned_cols=184 Identities=24% Similarity=0.346 Sum_probs=163.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccC-Ccccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM-DRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~~~ 75 (197)
+|.||||||||+|+|+|.++ |++|+|+++|+++... ....-|+.|+|+.+++|+|||.||+.++..... ....+
T Consensus 40 ~GeNGAGKSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id 118 (500)
T COG1129 40 LGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID 118 (500)
T ss_pred ecCCCCCHHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccC
Confidence 69999999999999999998 7999999999998532 223458999999999999999999987654322 22346
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
++...+.+.++|+.+++....+.++++||.||||.|+||||+..++++||||||||+|+....+.+++++++++++|.++
T Consensus 119 ~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~i 198 (500)
T COG1129 119 RKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAI 198 (500)
T ss_pred HHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 67888899999999999655899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
|++||.+. +++++|||+.||.+ |+.+...+
T Consensus 199 i~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~ 228 (500)
T COG1129 199 IYISHRLD-EVFEIADRITVLRD-GRVVGTRP 228 (500)
T ss_pred EEEcCcHH-HHHHhcCEEEEEeC-CEEeeecc
Confidence 99999975 89999999999998 77766555
No 249
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-43 Score=289.35 Aligned_cols=189 Identities=25% Similarity=0.394 Sum_probs=154.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----CceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----LVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|++++ |++|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+.......
T Consensus 77 vG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 155 (305)
T PRK14264 77 IGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGD 155 (305)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhccc
Confidence 599999999999999999852 589999999998743 1234679999999988875 999999986432110
Q ss_pred ---------ccc-cHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy4235 72 ---------RRT-TWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137 (197)
Q Consensus 72 ---------~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~ 137 (197)
... ......+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~ 235 (305)
T PRK14264 156 INTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235 (305)
T ss_pred ccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 000 1122345678899999874 45688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE-EEeCCcEEEEecChhHHHh
Q psy4235 138 ANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS-LLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 138 ~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~-~l~~gg~i~~~g~~~~~~~ 193 (197)
+..+.++|++++++ .++|++||+.. .+..+||+++ +|++ |+++..|+++++..
T Consensus 236 ~~~l~~~L~~~~~~-~tiiivtH~~~-~i~~~~d~i~~~l~~-G~i~~~g~~~~~~~ 289 (305)
T PRK14264 236 TSKIEDLIEELAEE-YTVVVVTHNMQ-QAARISDQTAVFLTG-GELVEYDDTDKIFE 289 (305)
T ss_pred HHHHHHHHHHHhcC-CEEEEEEcCHH-HHHHhcCEEEEEecC-CEEEEeCCHHHHHh
Confidence 99999999999764 89999999974 6789999974 5676 89999999887753
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1e-42 Score=280.75 Aligned_cols=189 Identities=22% Similarity=0.232 Sum_probs=150.8
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcc---cc-cceEEEEecCCCCCCCCCHHHHHHHHHHc-cC--C-
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRT---VM-SRISGYVAQQDFLIEELTVLEHLQFMAKL-TM--D- 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~--~- 71 (197)
+||||||||||+++|+|+.+ +|++|+|.++|.++... .. ++.++|++|++.+++.+|+.+++.+.... .. .
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (248)
T PRK09580 33 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ 112 (248)
T ss_pred ECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhccccc
Confidence 59999999999999999952 37999999999887432 12 24589999999988888877776543211 00 0
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
...........+.++++.+++. ...++++. +||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~ 192 (248)
T PRK09580 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR 192 (248)
T ss_pred ccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 0011112345677889999995 45667775 899999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhHH
Q psy4235 150 CESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
+++.|||++||+.. .+... ||++++|++ |+++..|+++.+
T Consensus 193 ~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g~i~~~g~~~~~ 233 (248)
T PRK09580 193 DGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDFTLV 233 (248)
T ss_pred hCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-CeEEEeCCHHHH
Confidence 77899999999974 56666 899999987 888888988754
No 251
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.4e-43 Score=282.45 Aligned_cols=173 Identities=21% Similarity=0.210 Sum_probs=145.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|.++|. .++|++|++..++.+||.||+.+...... . ..
T Consensus 31 ~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-----~~ 93 (246)
T cd03237 31 LGPNGIGKTTFIKMLAGVLK-PDEGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDFY--T-----HP 93 (246)
T ss_pred ECCCCCCHHHHHHHHhCCCc-CCCCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhcc--c-----cH
Confidence 69999999999999999998 79999999884 47999999887778899999876432111 0 11
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t 159 (197)
..+.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||++||+.++..+.++|++++++ +.++|++|
T Consensus 94 ~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 94 YFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred HHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34567899999998899999999999999999999999999999999999999999999999999999764 89999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEE-EEecChhHH
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKV 191 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~ 191 (197)
|+.. .+..+||++++|+++..+ ...+++.++
T Consensus 174 Hd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 174 HDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9974 788899999999753222 234555543
No 252
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-43 Score=310.43 Aligned_cols=178 Identities=23% Similarity=0.305 Sum_probs=152.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCC--C-C-----CCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFL--I-E-----ELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~--~-~-----~ltv~e~l~~~~~~~ 69 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... ..++.++|++|++.+ + + .+|+.+++.+.
T Consensus 35 iG~nGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---- 109 (490)
T PRK10938 35 VGANGSGKSALARALAGELP-LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---- 109 (490)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----
Confidence 69999999999999999998 7999999999876421 233558999998643 1 1 46888876532
Q ss_pred CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
....+++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|++++
T Consensus 110 -------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 182 (490)
T PRK10938 110 -------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH 182 (490)
T ss_pred -------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0123568899999999988999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++|.|+|++||+.. .+..+||++++|++ |+++..|+++++.
T Consensus 183 ~~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~ 223 (490)
T PRK10938 183 QSGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGEREEIL 223 (490)
T ss_pred hcCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 77899999999974 78899999999987 8888888887654
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-43 Score=272.80 Aligned_cols=153 Identities=52% Similarity=0.825 Sum_probs=132.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+.+ +|++|+|.++|+++. ...++.++|++|++.+++.+|++||+.+....
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------- 106 (192)
T cd03232 39 MGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL----------- 106 (192)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH-----------
Confidence 59999999999999999863 368999999999875 33456789999999999999999999864210
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
+ +|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|++|
T Consensus 107 --------~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivt 165 (192)
T cd03232 107 --------R-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165 (192)
T ss_pred --------h-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 0 8999999999999999999999999999999999999999999999987789999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
|++...+...||++++|+++|++++.|
T Consensus 166 H~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 166 HQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 997423678999999997647777654
No 254
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=306.52 Aligned_cols=178 Identities=29% Similarity=0.414 Sum_probs=153.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|+.+ |++|+|.+||.+..+ ..++++++||+|+|.+|+. |++||+.++...
T Consensus 353 vG~SGaGKSTLl~lL~G~~~-~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~--------- 421 (559)
T COG4988 353 VGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD--------- 421 (559)
T ss_pred ECCCCCCHHHHHHHHhCcCC-CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc---------
Confidence 69999999999999999998 799999999988754 4688999999999999998 999999986321
Q ss_pred HHHHHHHHHHHHcCCccccc----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRRQ----------VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~----------~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
..++.+.++++..++.+..+ .....|||||+|||++||||+.+++++|+||||++||.++.+.|.+.|.+
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~ 501 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHH
Confidence 12355667777766654433 33456999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++++ +|+|++||++. ...-+|+|++|++ |++++.|.++++.+
T Consensus 502 l~~~-ktvl~itHrl~--~~~~~D~I~vld~-G~l~~~g~~~~L~~ 543 (559)
T COG4988 502 LAKQ-KTVLVITHRLE--DAADADRIVVLDN-GRLVEQGTHEELSE 543 (559)
T ss_pred HHhC-CeEEEEEcChH--HHhcCCEEEEecC-CceeccCCHHHHhh
Confidence 9764 89999999973 5788999999987 99999999998864
No 255
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.5e-43 Score=282.81 Aligned_cols=170 Identities=33% Similarity=0.425 Sum_probs=145.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCC--CHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL--TVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|. ..++|++|++.+++.+ |+.+++.+.. ..
T Consensus 36 ~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~---- 96 (251)
T PRK09544 36 LGPNGAGKSTLVRVVLGLVA-PDEGVIKRNGK--------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GT---- 96 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCc--------cCEEEeccccccccccChhHHHHHhccc------cc----
Confidence 59999999999999999998 79999999862 3589999998877653 6777764311 11
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii 157 (197)
..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++ +.|+|+
T Consensus 97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiii 176 (251)
T PRK09544 97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176 (251)
T ss_pred cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1245778999999999899999999999999999999999999999999999999999999999999999765 889999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+||+.. .+...||++++|++ +++..|+++++.
T Consensus 177 vsH~~~-~i~~~~d~i~~l~~--~i~~~g~~~~~~ 208 (251)
T PRK09544 177 VSHDLH-LVMAKTDEVLCLNH--HICCSGTPEVVS 208 (251)
T ss_pred EecCHH-HHHHhCCEEEEECC--ceEeeCCHHHHh
Confidence 999974 78899999999953 577888887764
No 256
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.7e-43 Score=320.19 Aligned_cols=175 Identities=27% Similarity=0.362 Sum_probs=147.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+|+|+|+++ |++|+|.+||.++.. ..+++.+|||+|++.+|+. |++||+.++.. . +
T Consensus 485 vG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-~-----~-- 554 (686)
T TIGR03797 485 VGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-L-----T-- 554 (686)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC-C-----C--
Confidence 59999999999999999998 799999999999864 3567889999999999987 99999997532 1 1
Q ss_pred HHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++.++++..++.+ .......+||||||||++|||||+++|++||||||||+||+.+.+++.+.|+
T Consensus 555 --~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~ 632 (686)
T TIGR03797 555 --LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE 632 (686)
T ss_pred --HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 234455555555543 3334457899999999999999999999999999999999999999999998
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++ ++|+|++||++. ..+.||+|++|++ |++++.|+.+++++
T Consensus 633 ~~---~~T~IiItHr~~--~i~~~D~Iivl~~-G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 633 RL---KVTRIVIAHRLS--TIRNADRIYVLDA-GRVVQQGTYDELMA 673 (686)
T ss_pred Hh---CCeEEEEecChH--HHHcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 86 479999999974 4577999999987 99999999999864
No 257
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=8e-43 Score=272.86 Aligned_cols=164 Identities=30% Similarity=0.362 Sum_probs=141.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+...... .
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~---- 103 (198)
T TIGR01189 32 TGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG---G---- 103 (198)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC---C----
Confidence 59999999999999999988 7999999999987432 234568999999888888999999987653321 0
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||++||+.+++.+.+.|+++++++.|+|++
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 183 (198)
T TIGR01189 104 AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLT 183 (198)
T ss_pred cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 12457889999999988899999999999999999999999999999999999999999999999999987778999999
Q ss_pred ecCCcchHHhhcCeEEE
Q psy4235 159 IHQPTSGVFEKFDTVSL 175 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~ 175 (197)
||+.. .-.|++++.
T Consensus 184 sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 184 THQDL---GLVEARELR 197 (198)
T ss_pred Ecccc---cccceEEee
Confidence 99874 345677654
No 258
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=314.97 Aligned_cols=179 Identities=26% Similarity=0.392 Sum_probs=148.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|+++ |++|+|.+||.++.. ..+++.++|+||++.+|+. |++||+.++... ...
T Consensus 375 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~----~~~-- 446 (582)
T PRK11176 375 VGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTE----QYS-- 446 (582)
T ss_pred ECCCCCCHHHHHHHHHhccC-CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCCC----CCC--
Confidence 59999999999999999998 799999999999854 3456789999999999987 999999875311 011
Q ss_pred HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++.++++.++ ++........+||||||||++|||||+++|++||||||||+||+.+...+.+.|+
T Consensus 447 --~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~ 524 (582)
T PRK11176 447 --REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524 (582)
T ss_pred --HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 123444444444 3333444457799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. +++|+|++||++. ..+.||+|++|++ |++++.|+.+++++
T Consensus 525 ~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~-g~i~e~g~~~~l~~ 567 (582)
T PRK11176 525 ELQ-KNRTSLVIAHRLS--TIEKADEILVVED-GEIVERGTHAELLA 567 (582)
T ss_pred HHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 875 4689999999973 5678999999987 89999999998875
No 259
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-43 Score=282.45 Aligned_cols=175 Identities=27% Similarity=0.383 Sum_probs=142.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++ .|+.||+.+.............
T Consensus 46 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~ 123 (226)
T cd03248 46 VGPSGSGKSTVVALLENFYQ-PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEA 123 (226)
T ss_pred ECCCCCCHHHHHHHHhcCcC-CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHH
Confidence 59999999999999999988 7999999999887432 23456899999998876 5999999875321110000011
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.++++.+ |+....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++ +.|+
T Consensus 124 ~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti 202 (226)
T cd03248 124 AQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV 202 (226)
T ss_pred HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence 1112356788888 788888999999999999999999999999999999999999999999999999999865 6899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
|++||++. .+. .||++++|++ |+
T Consensus 203 i~~sh~~~-~~~-~~d~i~~l~~-g~ 225 (226)
T cd03248 203 LVIAHRLS-TVE-RADQILVLDG-GR 225 (226)
T ss_pred EEEECCHH-HHH-hCCEEEEecC-Cc
Confidence 99999975 564 5999999987 54
No 260
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4e-43 Score=314.34 Aligned_cols=177 Identities=27% Similarity=0.381 Sum_probs=149.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+|+|+|+++ |++|+|.+||.++.. ..+++.++|++|++.+|++ |++||+.++.. . .
T Consensus 373 vG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-~-----~-- 442 (592)
T PRK10790 373 VGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-I-----S-- 442 (592)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC-C-----C--
Confidence 59999999999999999998 799999999999854 3567889999999999998 99999998631 1 1
Q ss_pred HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
++++.++++.+|+. ........+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+
T Consensus 443 --d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~ 520 (592)
T PRK10790 443 --EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520 (592)
T ss_pred --HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 13345555555543 33334557799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++.+ ++|+|++||++. ....||+|++|++ |++++.|+++++++
T Consensus 521 ~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~-G~i~~~G~~~~L~~ 563 (592)
T PRK10790 521 AVRE-HTTLVVIAHRLS--TIVEADTILVLHR-GQAVEQGTHQQLLA 563 (592)
T ss_pred HHhC-CCEEEEEecchH--HHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9864 689999999974 4677999999987 99999999998864
No 261
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.5e-43 Score=321.47 Aligned_cols=176 Identities=27% Similarity=0.409 Sum_probs=146.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.+||.++.. ..+++.++||+|++.+|+. |++||+.++... .+
T Consensus 511 vG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~-----~~-- 581 (710)
T TIGR03796 511 VGGSGSGKSTIAKLVAGLYQ-PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDPT-----IP-- 581 (710)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCCC-----CC--
Confidence 69999999999999999998 799999999999853 3567889999999999987 999999875211 11
Q ss_pred HHHHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENL-----------GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++.+.++.. |++........+||||||||++|||||+++|++||||||||+||+.+.+++.+.|+
T Consensus 582 --~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 582 --DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred --HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 12233334333 34444445567899999999999999999999999999999999999999999997
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+ .++|+|++||++. ....||++++|++ |++++.|+.+++++
T Consensus 660 ~---~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 660 R---RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTHEELWA 700 (710)
T ss_pred h---cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCHHHHHH
Confidence 6 4789999999974 4577999999987 99999999999875
No 262
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.8e-43 Score=297.19 Aligned_cols=183 Identities=25% Similarity=0.340 Sum_probs=163.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+|+||||||||+++|.|+++ |++|+|+++|+++.-. ..+..||+|+|++.+++++||.||+.++...........
T Consensus 36 LGENGAGKSTLm~iL~G~~~-P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~ 114 (501)
T COG3845 36 LGENGAGKSTLMKILFGLYQ-PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR 114 (501)
T ss_pred eccCCCCHHHHHHHHhCccc-CCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCH
Confidence 59999999999999999999 7999999999998532 234569999999999999999999998764322223345
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
+...+++.++.+.+||.-..+.++.+||-||||||.|.+||..+|++|||||||+-|-|...+++++.++.++++|++||
T Consensus 115 ~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi 194 (501)
T COG3845 115 RQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194 (501)
T ss_pred HHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 66778899999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
++||... ++.++|||+-+|.+ |+++...
T Consensus 195 ~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~ 222 (501)
T COG3845 195 FITHKLK-EVMAIADRVTVLRR-GKVVGTV 222 (501)
T ss_pred EEeccHH-HHHHhhCeeEEEeC-CeEEeee
Confidence 9999985 79999999999998 7776443
No 263
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-42 Score=273.86 Aligned_cols=166 Identities=30% Similarity=0.415 Sum_probs=143.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+.+ |++|+|+++|.++.....++.++|++|++.+++.+|+.||+.+...... . ..
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~ 105 (207)
T PRK13539 34 TGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EE 105 (207)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cH
Confidence 69999999999999999988 7999999999886422245668999999888888999999987654321 1 12
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++.+++.+..++++++||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.|+|++||
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 185 (207)
T PRK13539 106 LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185 (207)
T ss_pred HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 35788999999988888999999999999999999999999999999999999999999999999998877899999999
Q ss_pred CCcchHHhhcCeEEEEe
Q psy4235 161 QPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~ 177 (197)
+.. .+.. |+++-+.
T Consensus 186 ~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 186 IPL-GLPG--ARELDLG 199 (207)
T ss_pred Cch-hhcc--CcEEeec
Confidence 974 4544 8887774
No 264
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=281.06 Aligned_cols=186 Identities=24% Similarity=0.343 Sum_probs=154.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-C---ceeEEEECCeeCCc-------ccccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-L---VQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~---~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
+|+||||||||+++|+|+.+| | ++|+|.++|.++.. ..+++.++|++|++.+++. |+.||+.+.....
T Consensus 48 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~ 126 (265)
T PRK14252 48 IGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR 126 (265)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc
Confidence 599999999999999999863 2 79999999987631 1235678999999998886 9999998764322
Q ss_pred CCccccHHHHHHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 70 MDRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l 145 (197)
.. ......++.+.++++.+++. +..++.+.+||+||+||++|||||+.+|+++||||||++||+.++..+.+.|
T Consensus 127 ~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 204 (265)
T PRK14252 127 GV--KRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204 (265)
T ss_pred CC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 11 11122345677788888763 4567889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 146 KQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 146 ~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++++. +.|+|++||+.. .+.++||++++|++ |+++..|+.+++.
T Consensus 205 ~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 248 (265)
T PRK14252 205 SDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGATDTIF 248 (265)
T ss_pred HHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 99975 689999999974 78889999999987 8888889988775
No 265
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.8e-43 Score=313.14 Aligned_cols=188 Identities=29% Similarity=0.415 Sum_probs=153.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||++.|++++. |++|+|.+||.++.. ..+++.++||+|++.+|.. |++||+.++......+.....
T Consensus 361 VG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~at~eei~~a 438 (567)
T COG1132 361 VGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEA 438 (567)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCCCCHHHHHHH
Confidence 69999999999999999998 799999999999864 3567889999999999995 999999987432111111111
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.++.+ |++.........||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +++|+
T Consensus 439 ~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~ 517 (567)
T COG1132 439 LKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTT 517 (567)
T ss_pred HHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEE
Confidence 1111234455555 56666666777999999999999999999999999999999999999999999999887 56899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|+++|++. .+ ..||+|++|++ |++++.|+++|++..
T Consensus 518 iiIaHRls-ti-~~aD~IiVl~~-G~i~e~G~h~eLl~~ 553 (567)
T COG1132 518 LIIAHRLS-TI-KNADRIIVLDN-GRIVERGTHEELLAK 553 (567)
T ss_pred EEEeccHh-HH-HhCCEEEEEEC-CEEEEecCHHHHHHc
Confidence 99999984 44 44999999998 899999999998763
No 266
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.8e-43 Score=309.77 Aligned_cols=188 Identities=26% Similarity=0.398 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|++|++.+|+. |++||+.++............
T Consensus 350 vG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~ 427 (544)
T TIGR01842 350 IGPSGSGKSTLARLIVGIWP-PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEA 427 (544)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCCCCHHHHHHH
Confidence 69999999999999999998 799999999998754 2456789999999999987 999999854311100000000
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....++++++.+ |++........+||||||||++||||++++|++|||||||++||+.+++.+.+.|+++..+++|+
T Consensus 428 ~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tv 507 (544)
T TIGR01842 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITV 507 (544)
T ss_pred HHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEE
Confidence 1112234566666 56666777789999999999999999999999999999999999999999999999987668999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. ..+.||++++|++ |++++.|+++++.+
T Consensus 508 i~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 508 VVITHRPS--LLGCVDKILVLQD-GRIARFGERDEVLA 542 (544)
T ss_pred EEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCHHHHhh
Confidence 99999974 4678999999987 89999999988765
No 267
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.4e-43 Score=285.27 Aligned_cols=176 Identities=23% Similarity=0.372 Sum_probs=151.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ ++|+|+++|.++.. ..+++.++|+||++.+|+. |+++|+..+.. ..
T Consensus 36 vG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~-- 104 (275)
T cd03289 36 LGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WS-- 104 (275)
T ss_pred ECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CC--
Confidence 69999999999999999985 58999999999753 2345679999999999986 99999964311 11
Q ss_pred HHHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISG-----------LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.++++.++|.+..++.+.. ||+|||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 105 --~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~ 182 (275)
T cd03289 105 --DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182 (275)
T ss_pred --HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 23567788899998888887776 99999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. .++|||++||+.. .+. .||++++|++ |++++.|++++++.
T Consensus 183 ~~~-~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~~~l~~ 225 (275)
T cd03289 183 QAF-ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSIQKLLN 225 (275)
T ss_pred Hhc-CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCHHHHhh
Confidence 875 4799999999974 554 5999999987 89999999998865
No 268
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-43 Score=267.15 Aligned_cols=139 Identities=39% Similarity=0.571 Sum_probs=126.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+++ |++|+|+++|.++.. ..+++.++|++|++.+++.+|+.||+.
T Consensus 32 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------- 95 (173)
T cd03230 32 LGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------- 95 (173)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh---------------
Confidence 59999999999999999988 799999999998753 234567999999999999999999863
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
||+||+||++|||||+.+|+++||||||++||+.++..+.+.|++++++|.++|++
T Consensus 96 ------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~ 151 (173)
T cd03230 96 ------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLS 151 (173)
T ss_pred ------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 99999999999999999999999999999999999999999999998778899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcE
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
||+.. .+...||++++|++ |+
T Consensus 152 th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 152 SHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred CCCHH-HHHHhCCEEEEEeC-CC
Confidence 99974 67889999999987 54
No 269
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-42 Score=268.95 Aligned_cols=143 Identities=28% Similarity=0.438 Sum_probs=127.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCC---CCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQD---FLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+++ |++|+|+++|.++... ..++.++|++|++ .+++.+|+.||+.+...
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------ 104 (182)
T cd03215 32 AGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------ 104 (182)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------
Confidence 59999999999999999998 7999999999987542 2345799999985 57888999999876420
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++++.
T Consensus 105 -----------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 155 (182)
T cd03215 105 -----------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155 (182)
T ss_pred -----------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999977789
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcE
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
|+|++||+.. .+..+||++++|++ |+
T Consensus 156 tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 156 AVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 9999999974 78899999999987 64
No 270
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=288.63 Aligned_cols=189 Identities=26% Similarity=0.372 Sum_probs=168.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+|+||||||||=.+|.++++ ++|+|+|+|+++.. .++++.+-.|||+| .+.|.|||.+-+..+...+..
T Consensus 319 VGESGSGKsTlG~allrL~~--s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~- 395 (534)
T COG4172 319 VGESGSGKSTLGLALLRLIP--SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP- 395 (534)
T ss_pred EecCCCCcchHHHHHHhhcC--cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-
Confidence 69999999999999999886 46999999999964 24567789999997 488999999999998877643
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
..+..+..+++.+.|+.+||+ ...+++|.++|||||||++||||++.+|++++||||||+||...+.+++++|+++.++
T Consensus 396 ~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 396 KLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 345567778999999999998 4579999999999999999999999999999999999999999999999999999865
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+.+-+++|||.. .+..+||+|+||++ |+|++.|+.++++..
T Consensus 476 ~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~~~if~~ 517 (534)
T COG4172 476 HGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPTEAVFAN 517 (534)
T ss_pred hCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCHHHHhcC
Confidence 889999999974 89999999999998 999999999998753
No 271
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-42 Score=276.24 Aligned_cols=171 Identities=25% Similarity=0.355 Sum_probs=140.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+.+ |++|+|+++|.++.. ..+++.++|++|++.+++ .|+.||+.+... ..
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~-- 105 (221)
T cd03244 36 VGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS-- 105 (221)
T ss_pred ECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC--
Confidence 59999999999999999988 799999999998743 234567999999998776 599999875321 11
Q ss_pred HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.+.++.+++.+. .++++.+||+||+||++|||||+.+|+++||||||++||+.+++.+.+.|+
T Consensus 106 --~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (221)
T cd03244 106 --DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183 (221)
T ss_pred --HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 1234445555555433 356889999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
+++. +.++|++||+.. .+. .||++++|++ |++++.|+
T Consensus 184 ~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 184 EAFK-DCTVLTIAHRLD-TII-DSDRILVLDK-GRVVEFDS 220 (221)
T ss_pred HhcC-CCEEEEEeCCHH-HHh-hCCEEEEEEC-CeEEecCC
Confidence 9864 689999999975 554 5999999987 88877664
No 272
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=297.79 Aligned_cols=179 Identities=19% Similarity=0.268 Sum_probs=152.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|.++|.+. ++.+.+.+++.+|++||+.+...... .......
T Consensus 56 iGpNGSGKSTLLkiLaGLl~-P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~~---~~~~e~~ 121 (549)
T PRK13545 56 IGLNGSGKSTLSNLIAGVTM-PNKGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMMG---LTKEKIK 121 (549)
T ss_pred EcCCCCCHHHHHHHHhCCCC-CCceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhcC---CCHHHHH
Confidence 59999999999999999998 7999999999752 12233456777899999987543221 1223344
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|++||
T Consensus 122 e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSH 201 (549)
T PRK13545 122 EIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH 201 (549)
T ss_pred HHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56788999999998899999999999999999999999999999999999999999999999999999877899999999
Q ss_pred CCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
++. .+..+||++++|++ |+++..|+++++...|
T Consensus 202 dl~-~i~~l~DrIivL~~-GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 202 SLS-QVKSFCTKALWLHY-GQVKEYGDIKEVVDHY 234 (549)
T ss_pred CHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhhH
Confidence 974 78899999999987 8998999998876654
No 273
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=8.3e-43 Score=317.31 Aligned_cols=180 Identities=29% Similarity=0.464 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+|+|+|+++ |++|+|.+||.++.. ..+++.++||+|++.+|+. |++||+.++... .+
T Consensus 497 vG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~~-----~~-- 567 (694)
T TIGR03375 497 IGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAPY-----AD-- 567 (694)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCCC-----CC--
Confidence 69999999999999999998 799999999999854 3567889999999999987 999999875321 11
Q ss_pred HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++.+.++..+ ++.........||||||||++|||||+.+|+++|||||||+||+.+.+.+.+.|+
T Consensus 568 --~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~ 645 (694)
T TIGR03375 568 --DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645 (694)
T ss_pred --HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 123333444333 3444445567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
++.+ ++|+|++||++. ..+.||+|++|++ |++++.|+.+++++..
T Consensus 646 ~~~~-~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~~eLl~~~ 690 (694)
T TIGR03375 646 RWLA-GKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPKDQVLEAL 690 (694)
T ss_pred HHhC-CCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCHHHHHHHh
Confidence 9864 789999999974 4688999999987 9999999999987654
No 274
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.9e-42 Score=330.81 Aligned_cols=195 Identities=29% Similarity=0.385 Sum_probs=164.8
Q ss_pred CCCCCCcHHHHHHHHhcCcC---CCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc---
Q psy4235 1 MSPSGAGKTTLLAALNKRVK---GLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR--- 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~---~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~--- 72 (197)
+||||||||||||+|+|+.. .+++|+|.+||.++... ..++.++|++|++.+++.+||+||+.|.+..+...
T Consensus 93 lG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~ 172 (1394)
T TIGR00956 93 LGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRP 172 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCC
Confidence 69999999999999999862 25899999999987532 24456999999999999999999999987643211
Q ss_pred -cccHHHHH-HHHHHHHHHcCCccccccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 73 -RTTWLELN-KTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 73 -~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l 145 (197)
....++.. ..++.+++.+||.+..+++ +++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 173 ~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L 252 (1394)
T TIGR00956 173 DGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252 (1394)
T ss_pred CCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHH
Confidence 11222222 2346789999998887765 4679999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 146 KQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 146 ~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
++++++ |.|+|+++|++...+.+++|++++|.+ |++++.|+++++.++|+
T Consensus 253 ~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~~~~~yF~ 303 (1394)
T TIGR00956 253 KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPADKAKQYFE 303 (1394)
T ss_pred HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHHHHHHHHH
Confidence 999875 899999999986678999999999987 89999999999988774
No 275
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-42 Score=270.81 Aligned_cols=163 Identities=23% Similarity=0.301 Sum_probs=140.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+.+ |++|+|+++|+++.. ...++.++|++|++.+++.+||.||+.+..... .
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~----- 103 (200)
T PRK13540 33 KGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS---P----- 103 (200)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC---c-----
Confidence 59999999999999999998 799999999998753 234567999999999989999999998764221 0
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
....+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||++||+.++..+.+.|+++++++.++|++
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 183 (200)
T PRK13540 104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLT 183 (200)
T ss_pred chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 12467889999999888889999999999999999999999999999999999999999999999999987778999999
Q ss_pred ecCCcchHHhhcCeEE
Q psy4235 159 IHQPTSGVFEKFDTVS 174 (197)
Q Consensus 159 th~~~~~~~~~~d~v~ 174 (197)
||+.. . ...||.-+
T Consensus 184 sh~~~-~-~~~~d~~~ 197 (200)
T PRK13540 184 SHQDL-P-LNKADYEE 197 (200)
T ss_pred eCCch-h-ccccchhh
Confidence 99964 3 46677654
No 276
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.1e-42 Score=317.08 Aligned_cols=178 Identities=31% Similarity=0.480 Sum_probs=148.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|++||.++.. ..+++.++||+|++.+|+. |++||+.++.... .+
T Consensus 506 vG~SGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~----~~-- 577 (708)
T TIGR01193 506 VGMSGSGKSTLAKLLVGFFQ-ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKEN----VS-- 577 (708)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCC----CC--
Confidence 69999999999999999998 799999999999753 3567889999999999987 9999999863111 11
Q ss_pred HHHHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENL-----------GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.++++.. |++........+||||||||++||||++++|++||||||||+||+.+.+.+.+.|+
T Consensus 578 --~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 578 --QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL 655 (708)
T ss_pred --HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 12233333333 33444455667899999999999999999999999999999999999999999998
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++ +++|+|++||++. ....||++++|++ |++++.|+.+++++
T Consensus 656 ~~--~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 656 NL--QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSHDELLD 697 (708)
T ss_pred Hh--cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 85 4789999999974 4678999999987 99999999999875
No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2e-42 Score=309.70 Aligned_cols=182 Identities=26% Similarity=0.390 Sum_probs=147.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+|+|+|+++ |++|+|.+||.++.. ..+++.++|++|++.+|+. |++||+.++... ...+
T Consensus 367 vG~sGsGKSTLl~lL~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~-----~~d~ 439 (588)
T PRK13657 367 VGPTGAGKSTLINLLQRVFD-PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRPD-----ATDE 439 (588)
T ss_pred ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCCC-----CCHH
Confidence 59999999999999999998 799999999999864 3456789999999999987 999999875211 1111
Q ss_pred HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+ .+.++++.+ |++.........||||||||++|||||+++|+++|||||||+||+.+.+.+.+.|+++.
T Consensus 440 ~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~- 518 (588)
T PRK13657 440 EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM- 518 (588)
T ss_pred HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-
Confidence 1111 122333333 33444444566799999999999999999999999999999999999999999999875
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++|+|++||++. ..+.||++++|++ |+++..|+.+++++
T Consensus 519 ~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~~~l~~ 558 (588)
T PRK13657 519 KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSFDELVA 558 (588)
T ss_pred cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCHHHHHH
Confidence 4799999999973 5688999999987 88989999988764
No 278
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.6e-42 Score=270.82 Aligned_cols=165 Identities=22% Similarity=0.315 Sum_probs=136.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.+++. |++||+.+... ...
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~------~~~- 110 (207)
T cd03369 40 VGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDE------YSD- 110 (207)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccCC------CCH-
Confidence 59999999999999999988 7999999999987432 234679999999988875 99999975311 111
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
+.+.+.++ .++++.+||+||+||++|||||+.+|+++||||||++||+.++..+.+.|+++. ++.|+|+
T Consensus 111 ---~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii 179 (207)
T cd03369 111 ---EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILT 179 (207)
T ss_pred ---HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 12333333 357889999999999999999999999999999999999999999999999985 4889999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecCh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQV 188 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~ 188 (197)
+||+.. .+.. ||++++|++ |++...|++
T Consensus 180 ~th~~~-~~~~-~d~v~~l~~-g~i~~~g~~ 207 (207)
T cd03369 180 IAHRLR-TIID-YDKILVMDA-GEVKEYDHP 207 (207)
T ss_pred EeCCHH-HHhh-CCEEEEEEC-CEEEecCCC
Confidence 999975 5554 999999987 888776653
No 279
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-42 Score=308.53 Aligned_cols=178 Identities=31% Similarity=0.533 Sum_probs=153.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|++||.++.. ..+++.++||+|++.+|+. |++||+.++...
T Consensus 372 vG~sGsGKSTL~~ll~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~--------- 440 (574)
T PRK11160 372 LGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPN--------- 440 (574)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCCc---------
Confidence 69999999999999999998 799999999999854 3456789999999999987 999999875321
Q ss_pred HHHHHHHHHHHHcCCcccccc----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRRQV----------QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
...+.+.+.++.+++.+..++ ....||||||||++||||++++|++|||||||++||+.+.+.+.+.|++
T Consensus 441 ~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 441 ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 123457778888887665443 4567999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+. +++|+|+++|++. . ...||++++|++ |++++.|+.+|+++
T Consensus 521 ~~-~~~tviiitHr~~-~-~~~~d~i~~l~~-G~i~~~g~~~~l~~ 562 (574)
T PRK11160 521 HA-QNKTVLMITHRLT-G-LEQFDRICVMDN-GQIIEQGTHQELLA 562 (574)
T ss_pred Hc-CCCEEEEEecChh-H-HHhCCEEEEEeC-CeEEEeCCHHHHHh
Confidence 85 4789999999974 4 466999999987 99999999998875
No 280
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-42 Score=266.12 Aligned_cols=139 Identities=36% Similarity=0.513 Sum_probs=125.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ...++.++|++|++.+++.+|+.||+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~---------- 100 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG---------- 100 (178)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec----------
Confidence 59999999999999999988 799999999998753 23456799999999999889999987542
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
||+|||||++|||||+.+|+++||||||+|||+.++..+.++|++++++ +.|
T Consensus 101 ---------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 153 (178)
T cd03229 101 ---------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153 (178)
T ss_pred ---------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 9999999999999999999999999999999999999999999999877 789
Q ss_pred EEEEecCCcchHHhhcCeEEEEeC
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+|++||+.. .+..+||++++|++
T Consensus 154 iii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 154 VVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEeC
Confidence 999999974 67789999999987
No 281
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.1e-42 Score=279.73 Aligned_cols=186 Identities=22% Similarity=0.307 Sum_probs=147.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|+++ |++|+|+++|.++... ..++.++|++|++.+++. |+.+|+...... ........
T Consensus 53 ~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~-~~~~~~~~ 129 (257)
T cd03288 53 CGRTGSGKSSLSLAFFRMVD-IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPECKC-TDDRLWEA 129 (257)
T ss_pred ECCCCCCHHHHHHHHHcccC-CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCCCC-CHHHHHHH
Confidence 59999999999999999988 7999999999987532 345679999999988875 999998532100 00000000
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.++++.+ +++...+.++.+||+||+||++|||||+.+|++|||||||++||+.++..+.+.++++. ++.|+
T Consensus 130 l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~ti 208 (257)
T cd03288 130 LEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTV 208 (257)
T ss_pred HHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEE
Confidence 0011234455555 66666777889999999999999999999999999999999999999999999999875 47899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||++. .+. .||++++|++ |+++..|+++++..
T Consensus 209 ii~sh~~~-~~~-~~dri~~l~~-G~i~~~g~~~~~~~ 243 (257)
T cd03288 209 VTIAHRVS-TIL-DADLVLVLSR-GILVECDTPENLLA 243 (257)
T ss_pred EEEecChH-HHH-hCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 99999985 455 4999999987 89989999887754
No 282
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.8e-42 Score=315.65 Aligned_cols=177 Identities=27% Similarity=0.428 Sum_probs=145.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.+||+++.. ..+++.++||+|++.+|+. |++||+.++.... +
T Consensus 513 vG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~~-----~-- 583 (711)
T TIGR00958 513 VGPSGSGKSTVAALLQNLYQ-PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDT-----P-- 583 (711)
T ss_pred ECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCCC-----C--
Confidence 69999999999999999998 799999999999854 3466789999999999986 9999998763211 1
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
++++.++++..++ +........+||||||||++||||++++|++||||||||+||+.+.+.+.+ ..
T Consensus 584 --~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~ 660 (711)
T TIGR00958 584 --DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR 660 (711)
T ss_pred --HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh
Confidence 1334444444444 333444556899999999999999999999999999999999999999988 22
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
...++|+|++||++. ....||+|++|++ |++++.|+++++++.
T Consensus 661 --~~~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 661 --SRASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTHKQLMED 703 (711)
T ss_pred --ccCCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCHHHHHhC
Confidence 235789999999974 4677999999987 999999999998753
No 283
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-43 Score=262.96 Aligned_cols=173 Identities=26% Similarity=0.382 Sum_probs=154.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+++.+++ |++|+++|.|++++. ..+++.++|+.|.|.+|++ ||.+|+.|....+...
T Consensus 35 tGPSG~GKStllk~va~Lis-p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr----- 107 (223)
T COG4619 35 TGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR----- 107 (223)
T ss_pred eCCCCccHHHHHHHHHhccC-CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccC-----
Confidence 59999999999999999998 799999999999864 4577889999999999998 9999999987655322
Q ss_pred HHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Q psy4235 78 ELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~i 155 (197)
.....+.++++++++.+ .+++++.+|||||+||++|+|-|...|+||+||||||+||+.+.+.|.++|.++. .+...+
T Consensus 108 ~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv 187 (223)
T COG4619 108 PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV 187 (223)
T ss_pred CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEE
Confidence 13467788999999975 5899999999999999999999999999999999999999999999999999987 568899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEE
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLL 182 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i 182 (197)
+.+||+.. +..+.+|+++-+.. |.+
T Consensus 188 ~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 188 LWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred EEEecChH-HHhhhhheEEEecc-Ccc
Confidence 99999985 77899999999987 654
No 284
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.9e-42 Score=328.63 Aligned_cols=194 Identities=31% Similarity=0.505 Sum_probs=165.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc-----
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR----- 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~----- 72 (197)
+||||||||||||+|+|+++ ++ +|+|.+||.++.....++.++|++|++.+++.+||+||+.|++......
T Consensus 197 lGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~ 275 (1470)
T PLN03140 197 LGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDL 275 (1470)
T ss_pred EcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccc
Confidence 69999999999999999987 56 9999999999865444567999999999999999999999987543110
Q ss_pred --cccHHH------------------------HHHHHHHHHHHcCCcccc-----cccCCCCCHHHHHHHHHHHHHhhCC
Q psy4235 73 --RTTWLE------------------------LNKTITRVMENLGINHRR-----QVQISGLSGGQRKRLALAVQLLTEP 121 (197)
Q Consensus 73 --~~~~~~------------------------~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGq~qrv~ia~al~~~p 121 (197)
.....+ ....++.+++.+||++.. ++.++.|||||||||+||++|+.+|
T Consensus 276 ~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p 355 (1470)
T PLN03140 276 LSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPT 355 (1470)
T ss_pred hhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCC
Confidence 000000 012357799999998765 4567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 122 QILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 122 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
++++|||||+|||+.++.++.+.|+++++ .|.|+|+++|++..++..+||++++|.+ |++++.|+++++.++|+
T Consensus 356 ~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~~~~~~yF~ 430 (1470)
T PLN03140 356 KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPRDHILEFFE 430 (1470)
T ss_pred cEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999976 4889999999986678999999999987 99999999999988775
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=299.82 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=152.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCC---CCCCCCCHHHHHHHHH--HccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQD---FLIEELTVLEHLQFMA--KLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~---~~~~~ltv~e~l~~~~--~~~~~ 71 (197)
+||||||||||+|+|+|+.+ |++|+|+++|.++.... .++.++|++|++ .+|+.+|+.+|..+.. .....
T Consensus 280 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (491)
T PRK10982 280 AGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNK 358 (491)
T ss_pred ecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhccc
Confidence 69999999999999999998 79999999999875321 234589999985 4788888887743211 00000
Q ss_pred cc-ccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 72 RR-TTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 72 ~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.. ......++.+.++++.+++. +..++++.+||||||||++||||++.+|++|||||||+|||+.+++.+++.|++++
T Consensus 359 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~ 438 (491)
T PRK10982 359 VGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA 438 (491)
T ss_pred ccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH
Confidence 00 11123346678899999995 56799999999999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChh
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVS 189 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~ 189 (197)
+++.|||++|||.. ++..+||++++|++ |+++..++.+
T Consensus 439 ~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 439 KKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 88999999999974 78899999999987 8887666553
No 286
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.2e-42 Score=306.47 Aligned_cols=179 Identities=27% Similarity=0.396 Sum_probs=148.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|+++ |++|+|+++|.++.. ..+++.++|++|++.+|+. |++||+.++... ...
T Consensus 364 vG~sGsGKSTLl~lL~gl~~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~----~~~-- 435 (571)
T TIGR02203 364 VGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRTE----QAD-- 435 (571)
T ss_pred ECCCCCCHHHHHHHHHhccC-CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCCC----CCC--
Confidence 59999999999999999998 799999999998753 3456789999999999987 999999875310 111
Q ss_pred HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
++++.++++.+++. .........||||||||++||||++.+|+++|||||||+||+.+.+.+.+.|+
T Consensus 436 --~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~ 513 (571)
T TIGR02203 436 --RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE 513 (571)
T ss_pred --HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 23445555555543 33333456799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. .++|+|++||++ ...+.||++++|++ |+++..|+.+++++
T Consensus 514 ~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~-g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 514 RLM-QGRTTLVIAHRL--STIEKADRIVVMDD-GRIVERGTHNELLA 556 (571)
T ss_pred HHh-CCCEEEEEehhh--HHHHhCCEEEEEeC-CEEEeeCCHHHHHH
Confidence 885 468999999997 35788999999987 89999999988763
No 287
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.2e-42 Score=312.05 Aligned_cols=182 Identities=26% Similarity=0.437 Sum_probs=150.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+|+|+|+++ |++|+|++||.++.. ..+++.++||+|++.+|+. |++||+.++... ...+
T Consensus 489 vG~sGsGKSTL~~ll~g~~~-p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~~-----~~~~ 561 (694)
T TIGR01846 489 VGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNPG-----APFE 561 (694)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCCC-----CCHH
Confidence 59999999999999999998 799999999999854 3466789999999999986 999999874211 1111
Q ss_pred HHH-----HHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELN-----KTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+.. ..+.+.++.+ |++........+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.
T Consensus 562 ~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~- 640 (694)
T TIGR01846 562 HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC- 640 (694)
T ss_pred HHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-
Confidence 111 1223444444 45555566678999999999999999999999999999999999999999999999985
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.++|+|++||++. . ...||++++|++ |++++.|+.+++++
T Consensus 641 ~~~t~i~itH~~~-~-~~~~d~ii~l~~-G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 641 RGRTVIIIAHRLS-T-VRACDRIIVLEK-GQIAESGRHEELLA 680 (694)
T ss_pred CCCEEEEEeCChH-H-HHhCCEEEEEeC-CEEEEeCCHHHHHH
Confidence 5789999999974 3 466999999987 99999999998864
No 288
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.7e-41 Score=265.92 Aligned_cols=156 Identities=28% Similarity=0.339 Sum_probs=132.9
Q ss_pred CCCCCCcHHHHHHHHhcCc--CCCceeEEEECCeeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRV--KGLVQGEILLNGCPISRTV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~--~~~~~G~i~~~g~~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+|+||||||||+++|+|+. + |++|+|.++|+++.... . +..++|++|++.+++.+++.+++
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l------------ 98 (200)
T cd03217 32 MGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL------------ 98 (200)
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-CCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH------------
Confidence 5999999999999999994 5 79999999999985421 1 33599999999988888887765
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
+....+||+||+||++|||||+.+|+++||||||++||+.++..+.+.|+++++++.|
T Consensus 99 ----------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~t 156 (200)
T cd03217 99 ----------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156 (200)
T ss_pred ----------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 1123579999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCCcchHHh-hcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 155 VICAIHQPTSGVFE-KFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 155 iii~th~~~~~~~~-~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+|++||++. .+.. .||++++|++ |++.+.| +.++...
T Consensus 157 iii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~-~~~~~~~ 194 (200)
T cd03217 157 VLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSG-DKELALE 194 (200)
T ss_pred EEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEc-cHHHHhh
Confidence 999999975 6666 7999999987 8888888 4445443
No 289
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.6e-42 Score=262.89 Aligned_cols=136 Identities=32% Similarity=0.527 Sum_probs=122.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|++|++.+++. |++||+
T Consensus 34 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l--------------- 96 (173)
T cd03246 34 IGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI--------------- 96 (173)
T ss_pred ECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC---------------
Confidence 59999999999999999998 799999999998753 2345678999999988875 999886
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+++++++.|+|+
T Consensus 97 -------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 151 (173)
T cd03246 97 -------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151 (173)
T ss_pred -------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999999999999877899999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcE
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~ 181 (197)
+||+.. .+ ..||++++|++ |+
T Consensus 152 ~sh~~~-~~-~~~d~v~~l~~-G~ 172 (173)
T cd03246 152 IAHRPE-TL-ASADRILVLED-GR 172 (173)
T ss_pred EeCCHH-HH-HhCCEEEEEEC-CC
Confidence 999974 55 68999999987 54
No 290
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.2e-42 Score=305.00 Aligned_cols=178 Identities=25% Similarity=0.432 Sum_probs=147.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|++|++.+|+. |++||+.++... ...
T Consensus 347 vG~sGsGKSTLl~ll~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~- 418 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD-----ATQ- 418 (569)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCC-----CCH-
Confidence 59999999999999999998 799999999999753 3456779999999999986 999999875311 111
Q ss_pred HHHHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENL-----------GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
+.+.+.++.. |++.........||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+
T Consensus 419 ---~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 419 ---QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred ---HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 2233333333 33444455677899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. +++|+|++||++. ....||++++|++ |+++..|+.+++++
T Consensus 496 ~~~-~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~~~l~~ 538 (569)
T PRK10789 496 QWG-EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNHDQLAQ 538 (569)
T ss_pred HHh-CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCHHHHHH
Confidence 985 5899999999974 4577999999987 89999999988764
No 291
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-41 Score=265.11 Aligned_cols=161 Identities=21% Similarity=0.306 Sum_probs=138.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|+||||||||+++|+|+.+ |++|+|+++|.++.... .+.++|++|++.+++.+||.||+.+...... ..
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~ 101 (195)
T PRK13541 32 KGANGCGKSSLLRMIAGIMQ-PSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SA 101 (195)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cH
Confidence 69999999999999999988 79999999999875422 3458999999888888999999987643221 12
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||++||+.+++.+.++|++..+++.|+|++||
T Consensus 102 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred HHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45778899999988889999999999999999999999999999999999999999999999999877667899999999
Q ss_pred CCcchHHhhcCeE
Q psy4235 161 QPTSGVFEKFDTV 173 (197)
Q Consensus 161 ~~~~~~~~~~d~v 173 (197)
+.. . ...+|.+
T Consensus 182 ~~~-~-i~~~~~~ 192 (195)
T PRK13541 182 LES-S-IKSAQIL 192 (195)
T ss_pred Ccc-c-cchhhee
Confidence 975 3 4546655
No 292
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.2e-41 Score=304.35 Aligned_cols=182 Identities=27% Similarity=0.377 Sum_probs=149.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|++|++.+|+. |++||+.++... ...+
T Consensus 367 vG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~~ 439 (585)
T TIGR01192 367 VGPTGAGKTTLINLLQRVYD-PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGREG-----ATDE 439 (585)
T ss_pred ECCCCCCHHHHHHHHccCCC-CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCCC-----CCHH
Confidence 59999999999999999998 799999999998753 3456789999999998875 999999875321 1111
Q ss_pred HHHHH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+. +.+.+..+ |++.........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.
T Consensus 440 ~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~- 518 (585)
T TIGR01192 440 EVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR- 518 (585)
T ss_pred HHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-
Confidence 11111 22333333 45556667788999999999999999999999999999999999999999999999885
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++|+|++||+.. . ...||++++|++ |+++..|+.+++.+
T Consensus 519 ~~~tvI~isH~~~-~-~~~~d~i~~l~~-G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 519 KNRTTFIIAHRLS-T-VRNADLVLFLDQ-GRLIEKGSFQELIQ 558 (585)
T ss_pred CCCEEEEEEcChH-H-HHcCCEEEEEEC-CEEEEECCHHHHHH
Confidence 4789999999974 4 467999999987 89999999988864
No 293
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.7e-42 Score=304.76 Aligned_cols=179 Identities=26% Similarity=0.398 Sum_probs=148.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+|+|+|+++ |++|+|.+||.+++. ..+++.++|+||++.+|+. |++||+.++... ..
T Consensus 372 vG~sGsGKSTLlklL~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~-----~~-- 442 (576)
T TIGR02204 372 VGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRPD-----AT-- 442 (576)
T ss_pred ECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCCC-----CC--
Confidence 59999999999999999998 799999999999854 3456789999999999987 999999875311 11
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++.+.++.+++ +.........||||||||++||||++.+|++||||||||+||+.+.+.+.+.|+
T Consensus 443 --~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 443 --DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred --HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 1234444444443 333344567799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
++. +++|+|++||++. ....||+++++++ |++++.|+++++.+.
T Consensus 521 ~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~-g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 521 TLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ-GRIVAQGTHAELIAK 564 (576)
T ss_pred HHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEeeecHHHHHHc
Confidence 985 4799999999973 4678999999998 889999999887643
No 294
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.7e-42 Score=264.42 Aligned_cols=145 Identities=38% Similarity=0.558 Sum_probs=126.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+++.++|++|
T Consensus 31 ~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q----------------------------- 80 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQ----------------------------- 80 (180)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------------------------
Confidence 59999999999999999988 7999999999987431 22334677776
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI 156 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~ii 156 (197)
+++.+++.+..++++.+||+||+||++|||||+.+|+++||||||++||+.+++.+.+.|++++++ +.|+|
T Consensus 81 --------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii 152 (180)
T cd03214 81 --------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152 (180)
T ss_pred --------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 666778877778889999999999999999999999999999999999999999999999999776 78999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
++||+.. .+.+.||++++|++ |++...
T Consensus 153 i~sh~~~-~~~~~~d~~~~l~~-g~i~~~ 179 (180)
T cd03214 153 MVLHDLN-LAARYADRVILLKD-GRIVAQ 179 (180)
T ss_pred EEeCCHH-HHHHhCCEEEEEEC-CEEEec
Confidence 9999974 67799999999987 777654
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.3e-41 Score=262.03 Aligned_cols=142 Identities=35% Similarity=0.599 Sum_probs=125.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+.+ |++|+|.++|.++.. ..+++.++|++|++.+++ .|++||+
T Consensus 34 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i---------------- 95 (178)
T cd03247 34 LGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL---------------- 95 (178)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh----------------
Confidence 59999999999999999988 799999999998743 233566899999988876 5998886
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
+.+||+||+||++||||++.+|++|||||||++||+.+++.+.+.|++++ ++.|+|++
T Consensus 96 ---------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~ 153 (178)
T cd03247 96 ---------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWI 153 (178)
T ss_pred ---------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 67899999999999999999999999999999999999999999999985 57899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
||+.. .+ ..||++++|++ |++++.
T Consensus 154 sh~~~-~~-~~~d~~~~l~~-g~i~~~ 177 (178)
T cd03247 154 THHLT-GI-EHMDKILFLEN-GKIIMQ 177 (178)
T ss_pred ecCHH-HH-HhCCEEEEEEC-CEEEec
Confidence 99975 55 57999999987 887654
No 296
>KOG0055|consensus
Probab=100.00 E-value=5.3e-42 Score=315.95 Aligned_cols=183 Identities=27% Similarity=0.426 Sum_probs=149.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|||||||||++++|.+++. |++|+|++||.++.. ..++.++|.|.|+|.+|.. |++||+.|+... ....
T Consensus 385 VG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~d-----at~~ 457 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPD-----ATRE 457 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCc-----ccHH
Confidence 69999999999999999998 799999999999865 3456789999999987775 999999986421 1111
Q ss_pred HHHHH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+. +.+.+..+ |++.....+..+||||||||++|||||+.+|+|||||||||+||+++.+.+.+.|.+.+
T Consensus 458 ~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~- 536 (1228)
T KOG0055|consen 458 EIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS- 536 (1228)
T ss_pred HHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-
Confidence 22111 23333333 34444445556799999999999999999999999999999999999999999998875
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
.|+|+|+++|+.. .+.. +|++++|++ |+|++.|+++|++..
T Consensus 537 ~grTTivVaHRLS-tIrn-aD~I~v~~~-G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 537 KGRTTIVVAHRLS-TIRN-ADKIAVMEE-GKIVEQGTHDELIAL 577 (1228)
T ss_pred cCCeEEEEeeehh-hhhc-cCEEEEEEC-CEEEEecCHHHHHhc
Confidence 4889999999975 5544 999999998 999999999998753
No 297
>KOG0058|consensus
Probab=100.00 E-value=8.2e-42 Score=300.50 Aligned_cols=188 Identities=29% Similarity=0.424 Sum_probs=154.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||+||||+.++|..++. |++|+|.+||.|+.. ..++++||+|.|+|.+|.. ||+|||.|+......+.....
T Consensus 500 VGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~A 577 (716)
T KOG0058|consen 500 VGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAA 577 (716)
T ss_pred ECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHH
Confidence 69999999999999999998 799999999999854 3467889999999999998 999999998652211111111
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.+..+ |.+.....+...||||||||++|||||+++|.||||||.||+||.++...+.+.|.+..+ ++||
T Consensus 578 Ak~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTV 656 (716)
T KOG0058|consen 578 AKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTV 656 (716)
T ss_pred HHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeE
Confidence 1222344455554 344555667778999999999999999999999999999999999999999999998865 5999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|++.|... -.+.+|+|+++++ |++++.|+.+|+++.
T Consensus 657 lvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 657 LVIAHRLS--TVRHADQIVVIDK-GRVVEMGTHDELLSK 692 (716)
T ss_pred EEEehhhh--HhhhccEEEEEcC-CeEEecccHHHHhhC
Confidence 99999974 4688999999987 999999999998753
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.7e-41 Score=266.47 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=132.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|++.++ ..|+.||+.+....
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~----- 105 (218)
T cd03290 33 VGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF----- 105 (218)
T ss_pred ECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC-----
Confidence 59999999999999999998 7999999999876421 1235689999999887 46999999874311
Q ss_pred ccHHHHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235 74 TTWLELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV 142 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~ 142 (197)
.. +...++++.+++.+ ..++++.+||+|||||++|||||+.+|++|||||||++||+.++..++
T Consensus 106 -~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 180 (218)
T cd03290 106 -NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180 (218)
T ss_pred -CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHH
Confidence 11 12233444444432 245678999999999999999999999999999999999999999999
Q ss_pred H--HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 143 N--LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 143 ~--~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+ +++.+++++.|+|++||+.. .+ ..||++++|++
T Consensus 181 ~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 181 QEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred HHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 8 67777666899999999975 45 57999999976
No 299
>KOG0057|consensus
Probab=100.00 E-value=1e-41 Score=291.65 Aligned_cols=177 Identities=25% Similarity=0.461 Sum_probs=150.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+|||||||++|+|.++.. ++|+|++||+++.. ...|+.||||||+..+|.+ ||.+|+.++.... .
T Consensus 384 vG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sa-----s-- 453 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSA-----S-- 453 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCc-----C--
Confidence 69999999999999999876 79999999999854 4578889999999999998 9999999864321 1
Q ss_pred HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++-+.+++.++. .....+...|||||||||+||||++++|+|+++|||||+||..+.+++++.++
T Consensus 454 --~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~ 531 (591)
T KOG0057|consen 454 --DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM 531 (591)
T ss_pred --HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence 23455555555553 33445667899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.. ..++|+|++.|+. .....||+|+++++ |++...|+.+|++.
T Consensus 532 ~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~n-G~v~e~gth~ell~ 574 (591)
T KOG0057|consen 532 DV-MSGRTVIMIVHRL--DLLKDFDKIIVLDN-GTVKEYGTHSELLA 574 (591)
T ss_pred Hh-cCCCeEEEEEecc--hhHhcCCEEEEEEC-CeeEEeccHHHHhh
Confidence 93 4589999999996 46788999999998 99999999999876
No 300
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=9.5e-41 Score=264.10 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=142.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEE-ECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEIL-LNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|+++ |++|+|. ++|..+ .+.+.+.+++.+|+.||+.+....+.. ....
T Consensus 19 ~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~enl~~~~~~~~~---~~~~- 83 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDAL----------PLGANSFILPGLTGEENARMMASLYGL---DGDE- 83 (213)
T ss_pred ECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCcee----------ccccccccCCcCcHHHHHHHHHHHcCC---CHHH-
Confidence 69999999999999999988 7999997 776532 123456788999999999987654321 1111
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
....+.+.+++....++++.+||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+..+ +.++|++|
T Consensus 84 --~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vs 160 (213)
T PRK15177 84 --FSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLT 160 (213)
T ss_pred --HHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEE
Confidence 123344567888888999999999999999999999999999999999999999999999998865433 35799999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|++. .+..+||++++|++ |++++.++.++....
T Consensus 161 H~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 161 HNPR-LIKEHCHAFGVLLH-GKITMCEDLAQATAL 193 (213)
T ss_pred CCHH-HHHHhcCeeEEEEC-CeEEEeCCHHHHHHH
Confidence 9974 67889999999987 899999999887544
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=300.33 Aligned_cols=185 Identities=26% Similarity=0.360 Sum_probs=161.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++.... .++.++|++|++.+++.+|+.||+.+......
T Consensus 40 ~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~--- 115 (648)
T PRK10535 40 VGASGSGKSTLMNILGCLDK-PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG--- 115 (648)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---
Confidence 59999999999999999998 79999999999985421 13569999999999999999999987543221
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
....+.++.+.++++.+++.+..++++.+||+||+||++|||||+.+|++|||||||++||+.+++.+.++|+++++++.
T Consensus 116 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~ 195 (648)
T PRK10535 116 LERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH 195 (648)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 12234456788999999999999999999999999999999999999999999999999999999999999999987789
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++++||+.. .+ ..||++++|++ |++++.|++++..
T Consensus 196 tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~~~ 231 (648)
T PRK10535 196 TVIIVTHDPQ-VA-AQAERVIEIRD-GEIVRNPPAQEKV 231 (648)
T ss_pred EEEEECCCHH-HH-HhCCEEEEEEC-CEEEeecCccccc
Confidence 9999999974 44 67999999987 9999999888764
No 302
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-41 Score=295.69 Aligned_cols=172 Identities=20% Similarity=0.307 Sum_probs=147.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCC--CCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|. +.+||++|++. +++.+|+.+|+.+... . . .
T Consensus 351 ~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~--~--~----~ 413 (530)
T PRK15064 351 IGENGVGKTTLLRTLVGELE-PDSGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ--E--G----D 413 (530)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhcc--C--C----c
Confidence 59999999999999999998 79999999873 45899999864 5667899999875321 0 0 1
Q ss_pred HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 79 LNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
..+.+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++ +.|+|+
T Consensus 414 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~ 490 (530)
T PRK15064 414 DEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIF 490 (530)
T ss_pred cHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEE
Confidence 235678899999994 6789999999999999999999999999999999999999999999999999887 359999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHhh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLKH 194 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~~ 194 (197)
+|||.. .+..+||++++|++ |+++ +.|+++++++.
T Consensus 491 vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 491 VSHDRE-FVSSLATRIIEITP-DGVVDFSGTYEEYLRS 526 (530)
T ss_pred EeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCHHHHHHH
Confidence 999974 78899999999998 7765 78999887764
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=295.64 Aligned_cols=178 Identities=22% Similarity=0.313 Sum_probs=147.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc-c----------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL-T---------- 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~---------- 69 (197)
+||||||||||||+|+|+++ |++|+|.++|. ..++|++|++.+++.+||.||+.+.... .
T Consensus 33 iG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 103 (530)
T PRK15064 33 IGANGCGKSTFMKILGGDLE-PSAGNVSLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY 103 (530)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh
Confidence 69999999999999999998 79999999873 3489999999999999999999864210 0
Q ss_pred CCcc--c----------------cHHHHHHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy4235 70 MDRR--T----------------TWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPT 130 (197)
Q Consensus 70 ~~~~--~----------------~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPt 130 (197)
.... . .....+.++.++++.+|+.+.. ++++.+||||||||++|||||+.+|++|||||||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt 183 (530)
T PRK15064 104 ALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPT 183 (530)
T ss_pred cccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0000 0 0001235678899999997644 5789999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHH
Q psy4235 131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVL 192 (197)
Q Consensus 131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~ 192 (197)
++||+.++..+.++|++ .+.|||++||+.. .+..+||++++|++ |++ ++.|++++++
T Consensus 184 ~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~~~~ 241 (530)
T PRK15064 184 NNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDY-GELRVYPGNYDEYM 241 (530)
T ss_pred cccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeC-CEEEEecCCHHHHH
Confidence 99999999999999864 4789999999974 78899999999998 777 5788887664
No 304
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7e-41 Score=262.95 Aligned_cols=158 Identities=24% Similarity=0.366 Sum_probs=127.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+.+ |++|+|.++| .++|++|++.+++ .|++||+.+..... .....
T Consensus 37 ~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g----------~i~~~~q~~~l~~-~t~~enl~~~~~~~------~~~~~ 98 (204)
T cd03250 37 VGPVGSGKSSLLSALLGELE-KLSGSVSVPG----------SIAYVSQEPWIQN-GTIRENILFGKPFD------EERYE 98 (204)
T ss_pred ECCCCCCHHHHHHHHhCcCC-CCCCeEEEcC----------EEEEEecCchhcc-CcHHHHhccCCCcC------HHHHH
Confidence 59999999999999999988 7999999998 4899999998885 59999998743211 11111
Q ss_pred HH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCC
Q psy4235 81 KT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN-LLKQLACES 152 (197)
Q Consensus 81 ~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~ 152 (197)
+. +.+.+..+ ++....++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+ +++++.+++
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~ 178 (204)
T cd03250 99 KVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN 178 (204)
T ss_pred HHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC
Confidence 11 12223332 34455667789999999999999999999999999999999999999999998 566666668
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
.|+|++||++. .+.. ||++++|++
T Consensus 179 ~tvi~~sh~~~-~~~~-~d~i~~l~~ 202 (204)
T cd03250 179 KTRILVTHQLQ-LLPH-ADQIVVLDN 202 (204)
T ss_pred CEEEEEeCCHH-HHhh-CCEEEEEeC
Confidence 89999999974 5655 999999987
No 305
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-40 Score=295.43 Aligned_cols=177 Identities=27% Similarity=0.318 Sum_probs=146.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc-c----------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL-T---------- 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~---------- 69 (197)
+||||||||||||+|+|+++ |++|+|.+++. ..+||++|++.+++.+||.||+.+.... .
T Consensus 39 iG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 109 (556)
T PRK11819 39 LGLNGAGKSTLLRIMAGVDK-EFEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIY 109 (556)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence 69999999999999999998 79999998742 3589999999999999999999874310 0
Q ss_pred ---CCcccc-------------------HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy4235 70 ---MDRRTT-------------------WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCD 127 (197)
Q Consensus 70 ---~~~~~~-------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllD 127 (197)
...... .....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLD 188 (556)
T PRK11819 110 AAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188 (556)
T ss_pred HHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 000000 0011356788999999964 78999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHH
Q psy4235 128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVL 192 (197)
Q Consensus 128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~ 192 (197)
|||++||+.++..+.++|+++. .|||++||+.. .+..+||++++|++ |+++ +.|+.++..
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~~~~ 249 (556)
T PRK11819 189 EPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYSSWL 249 (556)
T ss_pred CCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCHHHHH
Confidence 9999999999999999999873 59999999974 78899999999998 7764 778877643
No 306
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.5e-41 Score=322.72 Aligned_cols=185 Identities=26% Similarity=0.419 Sum_probs=148.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-----------------------------------------------------CceeEE
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-----------------------------------------------------LVQGEI 27 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-----------------------------------------------------~~~G~i 27 (197)
+||||||||||+++|+|++.| |++|+|
T Consensus 1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence 699999999999999999984 169999
Q ss_pred EECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHHH-----HHHHHHHHc--CCccccc
Q psy4235 28 LLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNK-----TITRVMENL--GINHRRQ 97 (197)
Q Consensus 28 ~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~ 97 (197)
++||.++.. ..+++.+|||+|++.+|+. |++|||.++... ...++..+ .+.+.++.+ |++....
T Consensus 1280 ~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~~-----at~eeI~~A~k~A~l~~fI~~LP~GydT~VG 1353 (1466)
T PTZ00265 1280 LLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKED-----ATREDVKRACKFAAIDEFIESLPNKYDTNVG 1353 (1466)
T ss_pred EECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCCC-----CCHHHHHHHHHHcCCHHHHHhCccccCCccC
Confidence 999999854 4567889999999999976 999999986321 11111111 122333333 3344444
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235 98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~iii~th~~~~~~~~~~d~v~~l 176 (197)
.....||||||||++|||||+++|+|||||||||+||+.+.+.|.+.|.++. .+++|+|+++|++. ..+.||+|++|
T Consensus 1354 e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl 1431 (1466)
T PTZ00265 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVF 1431 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEE
Confidence 5567899999999999999999999999999999999999999999999986 35899999999973 46789999999
Q ss_pred eCC---cE-EEEecChhHHHh
Q psy4235 177 AHG---GL-LAYHGQVSKVLK 193 (197)
Q Consensus 177 ~~g---g~-i~~~g~~~~~~~ 193 (197)
+++ |+ +++.|+.+|++.
T Consensus 1432 ~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1432 NNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred eCCCCCCCEEEEecCHHHHHh
Confidence 872 55 558999999875
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-40 Score=292.71 Aligned_cols=182 Identities=20% Similarity=0.244 Sum_probs=143.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCC--CCCHHHHHHHHHHc--cCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIE--ELTVLEHLQFMAKL--TMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~--~ltv~e~l~~~~~~--~~~~ 72 (197)
+||||||||||+|+|+|+.+++++|+|+++|+++... ..++.++|++|++.+++ ..++.+++.+.... ....
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
T PRK10938 292 VGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQ 371 (490)
T ss_pred ECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccccccc
Confidence 6999999999999999986522699999999876321 23456899999876543 34676665543211 0000
Q ss_pred cccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
... ...++.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++
T Consensus 372 ~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~ 450 (490)
T PRK10938 372 AVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE 450 (490)
T ss_pred CCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc
Confidence 111 223456889999999987 889999999999999999999999999999999999999999999999999999877
Q ss_pred C-CEEEEEecCCcchHHh-hcCeEEEEeCCcEEEEe
Q psy4235 152 S-RIVICAIHQPTSGVFE-KFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 152 ~-~~iii~th~~~~~~~~-~~d~v~~l~~gg~i~~~ 185 (197)
+ .|||++||+.. ++.. +||++++|++ |+++..
T Consensus 451 ~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 451 GETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred CCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 5 46999999975 6666 5999999987 766543
No 308
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-41 Score=287.39 Aligned_cols=178 Identities=29% Similarity=0.446 Sum_probs=153.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|.+. |++|+|.++|.++.. ..+++.+++++|...+|.. |+++|+.+....
T Consensus 370 lG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~--------- 438 (573)
T COG4987 370 LGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD--------- 438 (573)
T ss_pred ECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC---------
Confidence 69999999999999999998 799999999998753 3467789999999999988 999999986422
Q ss_pred HHHHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRR-----------QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
...+.+.++++.+||.+.. +.-...||||||||++|||+|+++.+++||||||.|||+.+.+++++.|.
T Consensus 439 AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~ 518 (573)
T COG4987 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518 (573)
T ss_pred CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH
Confidence 1235566777777775443 33457899999999999999999999999999999999999999999998
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+-. +|+|+|++||+... .+.||+|++|++ |+++++|++.+++.
T Consensus 519 ~~~-~~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~~~Ll~ 561 (573)
T COG4987 519 EHA-EGKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTHAELLA 561 (573)
T ss_pred HHh-cCCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCHHhhhc
Confidence 865 48999999999853 688999999987 99999999999875
No 309
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.6e-40 Score=295.01 Aligned_cols=165 Identities=22% Similarity=0.245 Sum_probs=143.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++ ..++|++|+..+++.+||.||+.+..... . ..
T Consensus 371 ~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~---~~ 431 (590)
T PRK13409 371 VGPNGIGKTTFAKLLAGVLK-PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDDL-----G---SS 431 (590)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhhc-----C---hH
Confidence 59999999999999999998 799999985 14899999988888999999998753211 1 11
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t 159 (197)
..+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++++++ +.|+|++|
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVD 511 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34678999999998899999999999999999999999999999999999999999999999999999764 89999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
||.. ++..+||++++|+ |++...|.
T Consensus 512 HD~~-~~~~~aDrvivl~--~~~~~~g~ 536 (590)
T PRK13409 512 HDIY-MIDYISDRLMVFE--GEPGKHGH 536 (590)
T ss_pred CCHH-HHHHhCCEEEEEc--Ccceeeee
Confidence 9974 7889999999995 35544443
No 310
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1e-39 Score=267.97 Aligned_cols=167 Identities=21% Similarity=0.309 Sum_probs=134.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|.++| .++|++|++.+++. ||.||+.+..... .
T Consensus 69 iG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~~------~---- 126 (282)
T cd03291 69 TGSTGSGKTSLLMLILGELE-PSEGKIKHSG----------RISFSSQFSWIMPG-TIKENIIFGVSYD------E---- 126 (282)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECC----------EEEEEeCccccccc-CHHHHhhcccccC------H----
Confidence 59999999999999999998 7999999987 28999999988875 9999998642110 0
Q ss_pred HHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHH
Q psy4235 81 KTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL-KQL 148 (197)
Q Consensus 81 ~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l-~~l 148 (197)
..+.+.++.+++.+ ..++++.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.+ +.+
T Consensus 127 ~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~ 206 (282)
T cd03291 127 YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL 206 (282)
T ss_pred HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence 01122223333321 234456899999999999999999999999999999999999999999865 555
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+ ++.+||++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus 207 ~-~~~tIiiisH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~~~~ 247 (282)
T cd03291 207 M-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFSELQS 247 (282)
T ss_pred h-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 4 4789999999975 44 68999999987 88888999887754
No 311
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-41 Score=256.47 Aligned_cols=189 Identities=26% Similarity=0.416 Sum_probs=164.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECC-eeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc---
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG-CPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR--- 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g-~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~--- 72 (197)
||||||||||++.+|+|..+ |+.|+++++| .++...+ .+.-||.-||.|..|+.+||+||+.+........
T Consensus 37 IGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~ 115 (249)
T COG4674 37 IGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS 115 (249)
T ss_pred ECCCCCCceeeeeeecccCC-CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHH
Confidence 69999999999999999988 7999999999 7775432 2345899999999999999999999875433211
Q ss_pred --cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 73 --RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 73 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.....+.+.+++++|...||.+..++..+.||.|||||+.|++.++++|++|+||||++|+--....+..++|+.++.
T Consensus 116 L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~ 195 (249)
T COG4674 116 LFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG 195 (249)
T ss_pred hhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc
Confidence 011224456899999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.++|+++.||+ .++.+++++|-+|+. |.+..+|+.+++-.
T Consensus 196 -~hsilVVEHDM-~Fvr~~A~~VTVlh~-G~VL~EGsld~v~~ 235 (249)
T COG4674 196 -KHSILVVEHDM-GFVREIADKVTVLHE-GSVLAEGSLDEVQN 235 (249)
T ss_pred -CceEEEEeccH-HHHHHhhheeEEEec-cceeecccHHHhhc
Confidence 57999999996 699999999999998 89999999998753
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.4e-40 Score=251.52 Aligned_cols=133 Identities=34% Similarity=0.410 Sum_probs=118.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|.++|. +.++|++|++.++ .+|+.||+.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~--------------- 87 (166)
T cd03223 33 TGPSGTGKSSLFRALAGLWP-WGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYP--------------- 87 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECCC--------ceEEEECCCCccc-cccHHHHhhcc---------------
Confidence 59999999999999999988 79999999873 5689999998765 56999998642
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.+.|+++ +.|+|++||
T Consensus 88 ------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh 146 (166)
T cd03223 88 ------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGH 146 (166)
T ss_pred ------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeC
Confidence 35789999999999999999999999999999999999999999999886 579999999
Q ss_pred CCcchHHhhcCeEEEEeCCcE
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~ 181 (197)
+.. . ...||++++|+++|.
T Consensus 147 ~~~-~-~~~~d~i~~l~~~~~ 165 (166)
T cd03223 147 RPS-L-WKFHDRVLDLDGEGG 165 (166)
T ss_pred Chh-H-HhhCCEEEEEcCCCC
Confidence 974 4 579999999988663
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.2e-40 Score=292.12 Aligned_cols=177 Identities=27% Similarity=0.298 Sum_probs=144.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccC----------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM---------- 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~---------- 70 (197)
+|||||||||||++|+|+.+ |++|+|.+++ ...+||++|++.+++.+||.||+.++.....
T Consensus 37 iG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~ 107 (552)
T TIGR03719 37 LGLNGAGKSTLLRIMAGVDK-EFNGEARPAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEIS 107 (552)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence 69999999999999999998 7999999875 1458999999999999999999987432100
Q ss_pred --CccccHH---------------------HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy4235 71 --DRRTTWL---------------------ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCD 127 (197)
Q Consensus 71 --~~~~~~~---------------------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllD 127 (197)
....... ....++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLD 186 (552)
T TIGR03719 108 AKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186 (552)
T ss_pred HHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0000000 01235667888888854 68899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHH
Q psy4235 128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVL 192 (197)
Q Consensus 128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~ 192 (197)
|||++||+.++..+.+.|+++ +.++|++||+.. .+..+||++++|++ |++ .+.|+++++.
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 187 EPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYSSWL 247 (552)
T ss_pred CCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHHHHH
Confidence 999999999999999999876 259999999974 78899999999998 765 4778887654
No 314
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=283.32 Aligned_cols=190 Identities=26% Similarity=0.387 Sum_probs=157.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
|||||||||||.|+|.|..+ |.+|.|++||-++.. ..+-+.|||+||+-.+|+. ||.|||.-+............
T Consensus 368 IGPSgSGKSTLaR~lvG~w~-p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieA 445 (580)
T COG4618 368 IGPSGSGKSTLARLLVGIWP-PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEA 445 (580)
T ss_pred ECCCCccHHHHHHHHHcccc-cCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHH
Confidence 79999999999999999988 799999999999854 3456789999999999999 999999865422111111111
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
..-..+.+++-.+ |.+.....-...||||||||+++||||..+|.+++||||-|+||......+.+.|.+.+++|.++
T Consensus 446 A~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~v 525 (580)
T COG4618 446 ARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTV 525 (580)
T ss_pred HHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEE
Confidence 2223456666655 33444455567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
|+++|.+. +...+|++++|++ |++..+|+.+|++...
T Consensus 526 vviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 526 VVIAHRPS--ALASVDKILVLQD-GRIAAFGPREEVLAKV 562 (580)
T ss_pred EEEecCHH--HHhhcceeeeecC-ChHHhcCCHHHHHHHh
Confidence 99999984 6899999999987 9999999999998764
No 315
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-40 Score=253.64 Aligned_cols=133 Identities=36% Similarity=0.572 Sum_probs=119.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|+++.. ..+++.++|++|++.+++ .|+.||+
T Consensus 34 ~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l--------------- 96 (171)
T cd03228 34 VGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI--------------- 96 (171)
T ss_pred ECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------
Confidence 59999999999999999998 799999999998753 233456899999988776 4888886
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
||+|||||++|||||+.+|++|||||||++||+.++..+.++|+++++ +.++|+
T Consensus 97 -------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~ 150 (171)
T cd03228 97 -------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIV 150 (171)
T ss_pred -------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 999999999999999999999999999999999999999999999864 689999
Q ss_pred EecCCcchHHhhcCeEEEEeC
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~ 178 (197)
+||+.. .+.. ||++++|++
T Consensus 151 ~sh~~~-~~~~-~d~~~~l~~ 169 (171)
T cd03228 151 IAHRLS-TIRD-ADRIIVLDD 169 (171)
T ss_pred EecCHH-HHHh-CCEEEEEcC
Confidence 999975 5666 999999987
No 316
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.3e-40 Score=267.42 Aligned_cols=167 Identities=24% Similarity=0.289 Sum_probs=142.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEE-----------ECCeeCCcc--ccc---ceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEIL-----------LNGCPISRT--VMS---RISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~-----------~~g~~~~~~--~~~---~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
+||||||||||+|+|+|+++ |++|+|+ ++|.++... ..+ ..++|++|...+++. ++.+++.+
T Consensus 32 vG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~ 109 (255)
T cd03236 32 VGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGE 109 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHH
Confidence 69999999999999999998 7999996 788876431 111 237899999888884 88888876
Q ss_pred HHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
... .......+.++++.+++.+..++.+.+||+|||||++|||||+.+|+++||||||++||+.++..+.+.
T Consensus 110 ~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~ 181 (255)
T cd03236 110 LLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARL 181 (255)
T ss_pred Hhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 431 112345678999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 145 LKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 145 l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
|+++++++.++|++||+.. .+..+||++++|++
T Consensus 182 l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~~ 214 (255)
T cd03236 182 IRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLYG 214 (255)
T ss_pred HHHHHhcCCEEEEEECCHH-HHHHhCCEEEEECC
Confidence 9999877899999999974 67789999999953
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.4e-40 Score=290.79 Aligned_cols=175 Identities=22% Similarity=0.252 Sum_probs=145.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+.+ |++|+|++++ + ..+||++|++ .+++.+||.||+.+....... .. .
T Consensus 354 ~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~~-~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~--~ 419 (552)
T TIGR03719 354 IGPNGAGKSTLFRMITGQEQ-PDSGTIKIGE-T-------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQL---GK--R 419 (552)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCeEEEECC-c-------eEEEEEeCCccccCCCCcHHHHHHhhcccccc---Cc--c
Confidence 69999999999999999998 7999999854 2 1489999996 488889999999886432111 11 1
Q ss_pred HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 80 NKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++. .++|++
T Consensus 420 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viiv 496 (552)
T TIGR03719 420 EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVI 496 (552)
T ss_pred hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEE
Confidence 123557899999974 5789999999999999999999999999999999999999999999999999883 389999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~ 193 (197)
|||. +.+..+||++++|+++|++. +.|+.++..+
T Consensus 497 sHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 497 SHDR-WFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9997 47889999999998655654 6677776543
No 318
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-40 Score=254.90 Aligned_cols=182 Identities=27% Similarity=0.390 Sum_probs=153.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccccc---ceEEEEecCC--CCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS---RISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~---~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
||.||||||||+|+|+|.+. |++|+|.++|.+++..+.. ..++.|||+| ..++.||+.||+.++..........
T Consensus 38 iGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~ 116 (263)
T COG1101 38 IGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS 116 (263)
T ss_pred EcCCCccHHHHHHHhhCccc-cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccc
Confidence 69999999999999999998 7999999999999875432 3478899997 5899999999999876543222221
Q ss_pred H---HHHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 76 W---LELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 76 ~---~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
. ....+...+-++.+ |+++.++.+++-|||||||-+++++|.++.|++|+|||-|++|||.....+++.-.++.+
T Consensus 117 ~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~ 196 (263)
T COG1101 117 SALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196 (263)
T ss_pred hhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHH
Confidence 1 22334455666665 567899999999999999999999999999999999999999999999999999999876
Q ss_pred C-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 151 E-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 151 ~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
+ ..|.+++||++ +.+..+.+|.++|+. |+|+.+
T Consensus 197 ~~klTtlMVTHnm-~~Al~yG~RlImLh~-G~IvlD 230 (263)
T COG1101 197 EHKLTTLMVTHNM-EDALDYGNRLIMLHS-GKIVLD 230 (263)
T ss_pred hcCCceEEEeccH-HHHHhhCCeEEEEeC-CeEEEE
Confidence 5 67999999997 589999999999987 888764
No 319
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-40 Score=263.49 Aligned_cols=153 Identities=27% Similarity=0.375 Sum_probs=139.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|+||||||||-|+|+|+++ |++|+|+|+|+++.... .....
T Consensus 45 VGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~~~-------------------------------------~~~~~ 86 (268)
T COG4608 45 VGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITKLS-------------------------------------KEERR 86 (268)
T ss_pred EecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhhcc-------------------------------------hhHHH
Confidence 69999999999999999999 79999999999865322 12344
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
+++.++|+.+|+. +.++++|.+||||||||++|||||+.+|+++++|||+|+||...+.++.++|+++.++ +.+.+++
T Consensus 87 ~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI 166 (268)
T COG4608 87 ERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI 166 (268)
T ss_pred HHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE
Confidence 6799999999997 4789999999999999999999999999999999999999999999999999999876 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||.. .+..+|||+.+|.. |++++.|+.++++.
T Consensus 167 sHDL~-vv~~isdri~VMy~-G~iVE~g~~~~~~~ 199 (268)
T COG4608 167 SHDLS-VVRYISDRIAVMYL-GKIVEIGPTEEVFS 199 (268)
T ss_pred EEEHH-hhhhhcccEEEEec-CceeEecCHHHHhh
Confidence 99974 89999999999998 99999999998875
No 320
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=263.77 Aligned_cols=190 Identities=28% Similarity=0.377 Sum_probs=163.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEe-cCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVA-QQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|||||||||+||+|+|++. |++|.|.++|.+.-. ..+-+.+++|+ |...+...+.+.+.+......+. .+..
T Consensus 56 lGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~---Ipd~ 131 (325)
T COG4586 56 LGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE---IPDD 131 (325)
T ss_pred EcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHh---CCHH
Confidence 69999999999999999999 799999999987532 22334566665 55677777778887776554442 2334
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVI 156 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~ii 156 (197)
...++.+.+.+.++++..++.+++.||-|||.|+.||.||+++|++|+|||||-|||...+..+.+.+++.+. ++.||+
T Consensus 132 ~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVl 211 (325)
T COG4586 132 EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211 (325)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEE
Confidence 5667889999999999999999999999999999999999999999999999999999999999999999985 489999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
++||+.. .+...||||+.++. |+++++|+.+++.+.|.
T Consensus 212 lTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 212 LTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EEecchh-hHHHhhhheEEeeC-CcEeecccHHHHHHHhC
Confidence 9999975 79999999999987 99999999999887763
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-39 Score=289.99 Aligned_cols=175 Identities=21% Similarity=0.245 Sum_probs=145.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|+++ |++|+|++++ + ..+||++|++ .+++.+||.||+.+........ . .
T Consensus 356 ~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~-~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~--~ 421 (556)
T PRK11819 356 IGPNGAGKSTLFKMITGQEQ-PDSGTIKIGE-T-------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVG---N--R 421 (556)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECC-c-------eEEEEEeCchhhcCCCCCHHHHHHhhccccccc---c--c
Confidence 69999999999999999998 7999999853 2 1489999996 7888999999998764321110 0 1
Q ss_pred HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 80 NKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
...+..+++.+++.. ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++. .++|++
T Consensus 422 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~v 498 (556)
T PRK11819 422 EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCAVVI 498 (556)
T ss_pred HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeEEEE
Confidence 123457899999964 5799999999999999999999999999999999999999999999999999873 389999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~ 193 (197)
||+.. .+..+||++++|+++|.+. +.|+.++.++
T Consensus 499 tHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 499 SHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred ECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99974 7889999999998656654 6788876654
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.5e-40 Score=291.85 Aligned_cols=162 Identities=34% Similarity=0.514 Sum_probs=134.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ..+++.++||+|++.+|+. |++||+.++.... .
T Consensus 354 vG~sGsGKSTL~~ll~g~~~-~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~-----~-- 424 (529)
T TIGR02857 354 VGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDA-----S-- 424 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCCC-----C--
Confidence 69999999999999999998 799999999999854 3467789999999999986 9999998753211 1
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
++.+.+.++..++ +........+||||||||++||||++++|+++|||||||+||+.+.+.+.+.++
T Consensus 425 --~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 425 --DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALR 502 (529)
T ss_pred --HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 1234444444444 333444567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l 176 (197)
++. +++|+|++||++. ..+.||++++|
T Consensus 503 ~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 503 ALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred Hhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 885 5799999999973 45789999875
No 323
>KOG0065|consensus
Probab=100.00 E-value=1.3e-40 Score=307.10 Aligned_cols=196 Identities=41% Similarity=0.674 Sum_probs=177.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+|+|||||||||++|+|+.. +..+|+|+++|.+.+...++|.+|||-|++...+.+||+|.|.|.+.++.....+.++.
T Consensus 823 MG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek 902 (1391)
T KOG0065|consen 823 MGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEK 902 (1391)
T ss_pred hcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHH
Confidence 69999999999999999853 34689999999998867788899999999999999999999999998876655555666
Q ss_pred HHHHHHHHHHcCCcccccccCCC----CCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 80 NKTITRVMENLGINHRRQVQISG----LSGGQRKRLALAVQLLTEP-QILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~----LSgGq~qrv~ia~al~~~p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
.+.++++++.++|+++.+.-++. ||..||+|+.||.-|+.+| .||+|||||||||..+...+++++|+++..|+|
T Consensus 903 ~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 903 YEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred HHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence 68899999999999888877766 9999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH----HHhhhh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK----VLKHFA 196 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~----~~~~~~ 196 (197)
|+++.|+|...+++.+|++++|++||+.++.|+..+ +.++|+
T Consensus 983 IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFe 1028 (1391)
T KOG0065|consen 983 ILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFE 1028 (1391)
T ss_pred EEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHH
Confidence 999999999999999999999999999999998864 444554
No 324
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-39 Score=246.56 Aligned_cols=127 Identities=31% Similarity=0.420 Sum_probs=114.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... ..++.++|++|
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------------------------- 82 (163)
T cd03216 32 LGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------------------------- 82 (163)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------------------------
Confidence 59999999999999999998 7999999999987542 13456889988
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
||+||+||++||||++.+|+++||||||++||+.+++.+.+.|+++++++.|+|
T Consensus 83 --------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 136 (163)
T cd03216 83 --------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136 (163)
T ss_pred --------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999999999999999999999999999999999999999999999987789999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAY 184 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~ 184 (197)
++||+.. .+.+.||++++|++ |++++
T Consensus 137 i~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 137 FISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred EEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 9999974 67889999999987 77754
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.1e-40 Score=316.58 Aligned_cols=177 Identities=23% Similarity=0.355 Sum_probs=149.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|.|+++ |++|+|.+||.++.. ..+|++++||||++.+|+. |++|||.++.. ..
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~-p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~------~s-- 1337 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSE------HN-- 1337 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCc-CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCC------CC--
Confidence 69999999999999999998 799999999999864 3567889999999999998 99999976421 11
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.+.++..++ +........+||||||||++|||||+++|+|||||||||+||+++.+.|.+.|+
T Consensus 1338 --deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232 1338 --DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred --HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1334445554444 334444567899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.. +++|+|+++|+.. . ...||+|++|++ |++++.|+++++++
T Consensus 1416 ~~~-~~~TvI~IAHRl~-t-i~~~DrIlVL~~-G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1416 EEF-KSCTMLVIAHRLN-T-IIDCDKILVLSS-GQVLEYDSPQELLS 1458 (1495)
T ss_pred HHc-CCCEEEEEeCCHH-H-HHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 874 4799999999974 3 456999999987 99999999999874
No 326
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6e-40 Score=290.40 Aligned_cols=150 Identities=31% Similarity=0.456 Sum_probs=124.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.+||.++.. ..+++.++||||++.+|+. |++||+.++... .
T Consensus 367 vG~SGsGKSTLl~lL~g~~~-p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~-----~---- 435 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTGLLD-PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPD-----A---- 435 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCC-----C----
Confidence 69999999999999999998 799999999998764 3456789999999999988 999999986311 1
Q ss_pred HHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 79 LNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.++++.++++..++.+ ........||||||||++|||||+++|++||||||||+||+.+.+.+.+.+++
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1234555555555533 22334567999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCC
Q psy4235 148 LACESRIVICAIHQP 162 (197)
Q Consensus 148 l~~~~~~iii~th~~ 162 (197)
+. +++|+|++||++
T Consensus 516 ~~-~~~TvIiItHrl 529 (529)
T TIGR02868 516 AL-SGKTVVVITHHL 529 (529)
T ss_pred hc-CCCEEEEEecCC
Confidence 64 478999999973
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-39 Score=314.35 Aligned_cols=177 Identities=25% Similarity=0.368 Sum_probs=149.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|.|+++ |++|+|.+||.++.. ..+|++++||||++.+|.. |++|||.++.. ..
T Consensus 1271 VGrSGSGKSTLl~lL~rl~~-p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~t-- 1340 (1622)
T PLN03130 1271 VGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------HN-- 1340 (1622)
T ss_pred ECCCCCCHHHHHHHHhCcCC-CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------CC--
Confidence 69999999999999999998 799999999999864 3567889999999999998 99999976421 11
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
++.+.++++..++ +........+||||||||++|||||+++|+|||||||||+||+.+.+.|.+.|+
T Consensus 1341 --deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130 1341 --DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred --HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 2334445554444 333444556899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.. +++|+|+++|+.. . ...||+|++|++ |++++.|+++++++
T Consensus 1419 ~~~-~~~TvI~IAHRL~-t-I~~~DrIlVLd~-G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1419 EEF-KSCTMLIIAHRLN-T-IIDCDRILVLDA-GRVVEFDTPENLLS 1461 (1622)
T ss_pred HHC-CCCEEEEEeCChH-H-HHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 875 4799999999975 3 456999999997 99999999999875
No 328
>KOG0055|consensus
Probab=100.00 E-value=1.4e-39 Score=300.00 Aligned_cols=182 Identities=27% Similarity=0.444 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|||||||||.+.+|-.++. |++|.|.+||.++.. ..+|+++|.|.|+|.||.. |++||+.|+... .+..
T Consensus 1022 VG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~~-----vs~~ 1094 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSEE-----VSEE 1094 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcC-CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCCC-----CCHH
Confidence 69999999999999999888 799999999999865 3467889999999999997 999999998211 1222
Q ss_pred HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+ .+.+.+..+ |++.....+..+||||||||++||||+++||+||||||.||+||.++.+.+.+.|.+..
T Consensus 1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~- 1173 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM- 1173 (1228)
T ss_pred HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-
Confidence 2222 233334433 44555666778999999999999999999999999999999999999999999999975
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|+|.|++.|.+. -.+-||.|+|+++ |+|++.|+.++++.
T Consensus 1174 ~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTHDELLA 1213 (1228)
T ss_pred cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccHHHHHh
Confidence 5899999999974 4688999999987 99999999999876
No 329
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=255.16 Aligned_cols=183 Identities=25% Similarity=0.359 Sum_probs=153.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecC--CCCCCCCCHHHHHHHHHH--ccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQ--DFLIEELTVLEHLQFMAK--LTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~--~~~~~ 72 (197)
+|||||||||||++++|..+ |++|.+.+.|+.... .++++.||||.-. ..+.+..+|+|-+.-+.. .....
T Consensus 63 ~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~ 141 (257)
T COG1119 63 VGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQ 141 (257)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccc
Confidence 59999999999999999988 789999999998743 3567889999754 445566788887754321 11111
Q ss_pred cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235 73 RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE- 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~- 151 (197)
....+...+++..+++.+|+.+.++++..+||-|||||+.|||||+.+|++||||||++|||...++.+.+.|.+++..
T Consensus 142 ~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~ 221 (257)
T COG1119 142 EDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP 221 (257)
T ss_pred cCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCC
Confidence 1223456678899999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
+.++++|||+.. ++-..+++++.+.+ |++++.|
T Consensus 222 ~~~~ll~VtHh~e-Ei~~~~th~lll~~-g~v~~~g 255 (257)
T COG1119 222 GAPALLFVTHHAE-EIPPCFTHRLLLKE-GEVVAQG 255 (257)
T ss_pred CCceEEEEEcchh-hcccccceEEEeeC-Cceeecc
Confidence 789999999974 78889999999987 8888766
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.9e-39 Score=284.69 Aligned_cols=167 Identities=25% Similarity=0.301 Sum_probs=139.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.+||.++.. ..+++.++|++|++.+|+. |+++| . . .
T Consensus 355 vG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~----~--~---- 419 (547)
T PRK10522 355 IGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G----K--P---- 419 (547)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----C--c----
Confidence 69999999999999999998 799999999999864 2456789999999998886 78777 1 0 0
Q ss_pred HHHHHHHHHHHHcCCccccccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q psy4235 78 ELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-E 151 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~ 151 (197)
...+.+.++++.+++....+.. ..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.+.+..+ .
T Consensus 420 ~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 499 (547)
T PRK10522 420 ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM 499 (547)
T ss_pred hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 1234677888888887554322 458999999999999999999999999999999999999999999986643 5
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
++|+|++||++. ....||++++|++ |++++.
T Consensus 500 ~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 500 GKTIFAISHDDH--YFIHADRLLEMRN-GQLSEL 530 (547)
T ss_pred CCEEEEEEechH--HHHhCCEEEEEEC-CEEEEe
Confidence 899999999973 5678999999998 666544
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-38 Score=286.78 Aligned_cols=174 Identities=26% Similarity=0.352 Sum_probs=144.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|.+ |.++ .+||++|++ .+++.+||.||+.+...... .. ..
T Consensus 351 ~G~NGsGKSTLlk~l~G~~~-p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~---~~--~~ 416 (635)
T PRK11147 351 IGPNGCGKTTLLKLMLGQLQ-ADSGRIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEVM---VN--GR 416 (635)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCCcEEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhccccc---cc--ch
Confidence 69999999999999999988 79999998 5432 489999985 58899999999987532110 01 11
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
...+.++++.+++. +..++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++ +.|||++
T Consensus 417 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~v 493 (635)
T PRK11147 417 PRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLV 493 (635)
T ss_pred HHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEE
Confidence 34577899999996 5688999999999999999999999999999999999999999999999999886 4599999
Q ss_pred ecCCcchHHhhcCeEEEEe-CCcEEEEecChhHHH
Q psy4235 159 IHQPTSGVFEKFDTVSLLA-HGGLLAYHGQVSKVL 192 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~-~gg~i~~~g~~~~~~ 192 (197)
|||. .++..+||++++++ +|....+.|+.++..
T Consensus 494 SHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 494 SHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred ECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9997 47889999999997 544445677777653
No 332
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6e-39 Score=310.55 Aligned_cols=177 Identities=24% Similarity=0.327 Sum_probs=148.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|.+++. |++|+|.+||.|+.. ..+|++++||||++.+|++ |+++||..+.. ..
T Consensus 1318 VGrTGsGKSTL~~lL~rl~~-~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~------~s-- 1387 (1522)
T TIGR00957 1318 VGRTGAGKSSLTLGLFRINE-SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQ------YS-- 1387 (1522)
T ss_pred ECCCCCCHHHHHHHHhcCcc-CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCcccC------CC--
Confidence 69999999999999999998 799999999999864 3567889999999999998 99999973211 11
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
++.+.++++..++ +........+||||||||++|||||+++|+|||||||||+||+++.+.|.+.|+
T Consensus 1388 --deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1388 --DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred --HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1334455555444 333444556799999999999999999999999999999999999999999998
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.. +++|+|+++|+.. ....||+|++|++ |++++.|+++++++
T Consensus 1466 ~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~-G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1466 TQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK-GEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 864 4789999999974 3566999999987 99999999999875
No 333
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9.6e-39 Score=309.04 Aligned_cols=177 Identities=23% Similarity=0.349 Sum_probs=149.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|++|||||||+++|.|+++ |++|+|++||.++.. ..+++.++||||++.+|+. |+++||..+. ..
T Consensus 1342 VGrTGSGKSTLl~lLlrl~~-p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~--- 1410 (1560)
T PTZ00243 1342 VGRTGSGKSTLLLTFMRMVE-VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EA--- 1410 (1560)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CC---
Confidence 69999999999999999998 799999999999864 3567889999999999988 9999996421 11
Q ss_pred HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTE-PQILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~-p~llllDEPts~LD~~~~~~i~~~l 145 (197)
..+.+.++++..++.+. ......+||||||||++|||||+++ |+|||||||||+||+.+.+.|.+.|
T Consensus 1411 -sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1411 -SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489 (1560)
T ss_pred -CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 12456666666666432 2234467999999999999999995 9999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 146 KQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 146 ~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++.. +++|+|+++|+.. ....||+|++|++ |++++.|+++++++
T Consensus 1490 ~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~-G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1490 MSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH-GAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9864 4789999999974 4577999999987 99999999999874
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.1e-38 Score=283.82 Aligned_cols=167 Identities=24% Similarity=0.291 Sum_probs=139.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.++|++|++.+|.. |+++|.. . .
T Consensus 374 vG~sGsGKSTl~~ll~g~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~--------~----~ 439 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYI-PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG--------E----H 439 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc--------c----c
Confidence 59999999999999999998 799999999999864 2456779999999998886 7888731 0 1
Q ss_pred HHHHHHHHHHHHcCCccccccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHh
Q psy4235 78 ELNKTITRVMENLGINHRRQVQ------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK-QLAC 150 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~-~l~~ 150 (197)
...+.+.++++.+++.+..+.. ...||||||||++||||++.+|++|||||||++||+.+.+.+.+.+. .++.
T Consensus 440 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~ 519 (555)
T TIGR01194 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR 519 (555)
T ss_pred hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 1235677889999987655443 35799999999999999999999999999999999999999988654 4555
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY 184 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~ 184 (197)
.++|+|++||++. ..+.||++++|++ |++++
T Consensus 520 ~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~~ 550 (555)
T TIGR01194 520 QGKTIIIISHDDQ--YFELADQIIKLAA-GCIVK 550 (555)
T ss_pred CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEE
Confidence 6899999999973 4678999999997 87764
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.1e-39 Score=307.79 Aligned_cols=174 Identities=24% Similarity=0.364 Sum_probs=139.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEEC-CeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM------ 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~-g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~------ 70 (197)
+||||||||||+++|+|+++ |++|+|+++ |.++.. ..+++.+|||+|++.+|+. |++||+.++.....
T Consensus 417 vG~SGsGKSTLl~lL~gl~~-p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 417 VGESGCGKSTILKLIERLYD-PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhcc-CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhc
Confidence 69999999999999999998 799999994 677643 2356779999999999985 99999998631000
Q ss_pred ---Cc------------------------------cc---------cHHHHHHHHHHHHHHcCCccc-----------cc
Q psy4235 71 ---DR------------------------------RT---------TWLELNKTITRVMENLGINHR-----------RQ 97 (197)
Q Consensus 71 ---~~------------------------------~~---------~~~~~~~~~~~~l~~~~l~~~-----------~~ 97 (197)
.. .. ......+.+.++++.+++.+. ..
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 00 00 000112456667776666443 34
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235 98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l 176 (197)
..+..||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++++ +++|+|+++|++. . .+.||++++|
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~-i~~aD~Iivl 652 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-T-IRYANTIFVL 652 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-H-HHhCCEEEEE
Confidence 56789999999999999999999999999999999999999999999999975 5899999999974 4 4789999999
Q ss_pred eC
Q psy4235 177 AH 178 (197)
Q Consensus 177 ~~ 178 (197)
++
T Consensus 653 ~~ 654 (1466)
T PTZ00265 653 SN 654 (1466)
T ss_pred eC
Confidence 87
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=285.05 Aligned_cols=169 Identities=27% Similarity=0.429 Sum_probs=142.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||||+|+|+++ |++|+|.+++. ..+||++|+. .+.+..|+.+++... .. ..
T Consensus 344 ~G~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~~---~~------~~ 405 (638)
T PRK10636 344 LGRNGAGKSTLIKLLAGELA-PVSGEIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLARL---AP------QE 405 (638)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCeEEECCC--------EEEEEecCcchhhCCccchHHHHHHHh---Cc------hh
Confidence 69999999999999999998 79999999741 2589999974 355667888775421 10 11
Q ss_pred HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 79 LNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
....+.++++.+++. +..++++..|||||||||+||++|+.+|++|||||||++||+.++..+.++|+++ . .|||+
T Consensus 406 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~ 482 (638)
T PRK10636 406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVV 482 (638)
T ss_pred hHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEE
Confidence 235678999999996 4689999999999999999999999999999999999999999999999999987 3 49999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVL 192 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~ 192 (197)
+|||. .++..+||++++|++ |+++ +.|++++..
T Consensus 483 vSHd~-~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~ 516 (638)
T PRK10636 483 VSHDR-HLLRSTTDDLYLVHD-GKVEPFDGDLEDYQ 516 (638)
T ss_pred EeCCH-HHHHHhCCEEEEEEC-CEEEEcCCCHHHHH
Confidence 99997 478899999999987 7775 788888763
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=263.74 Aligned_cols=189 Identities=26% Similarity=0.355 Sum_probs=163.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC----ceeEEEECCeeCCc---cccc----ceEEEEecCC--CCCCCCCHHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISR---TVMS----RISGYVAQQD--FLIEELTVLEHLQFMAK 67 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~----~~G~i~~~g~~~~~---~~~~----~~~~~v~q~~--~~~~~ltv~e~l~~~~~ 67 (197)
+|+||||||-..+.|+++++.+ -+|+|.|+|+++-. ..++ .+|+++||+| .+.|-.|+...+.....
T Consensus 42 VGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~ 121 (534)
T COG4172 42 VGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR 121 (534)
T ss_pred EecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHH
Confidence 6999999999999999998642 37999999999732 1221 3699999997 47788899888888777
Q ss_pred ccCCccccHHHHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy4235 68 LTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144 (197)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~ 144 (197)
.+. ....+..++++-++|+.+|+.+ .++.+|.+|||||||||.||+||+++|++||.||||++||...+.+|+++
T Consensus 122 ~Hr--g~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L 199 (534)
T COG4172 122 LHR--GLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL 199 (534)
T ss_pred HHh--cccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH
Confidence 664 3345567788999999999964 57889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|+++.++ |..++++|||.. .+.+++|||+||.+ |++++.|+.++++.
T Consensus 200 l~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~-G~ivE~~~t~~lF~ 247 (534)
T COG4172 200 LKELQAELGMAILFITHDLG-IVRKFADRVYVMQH-GEIVETGTTETLFA 247 (534)
T ss_pred HHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEec-cEEeecCcHHHHhh
Confidence 9999876 889999999985 89999999999998 99999999988875
No 338
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-38 Score=238.01 Aligned_cols=188 Identities=24% Similarity=0.317 Sum_probs=162.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC--CCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF--LIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
||.||||||||.|+|+|.++ |++|+|++||+++.-. ...+.|-++||+|+ +.|.+.+-+-+.....+.. ...
T Consensus 45 IG~NGSGKSTLakMlaGmi~-PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T--~~~ 121 (267)
T COG4167 45 IGENGSGKSTLAKMLAGMIE-PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNT--DLE 121 (267)
T ss_pred EccCCCcHhHHHHHHhcccC-CCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcc--cCC
Confidence 69999999999999999998 7999999999998532 23467899999975 6677777777766655432 234
Q ss_pred HHHHHHHHHHHHHHcCC-cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 76 WLELNKTITRVMENLGI-NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
.....+++.+.|..+|| .+.++.++..||-||||||++||||+.+|+++|.||..++||...+.++.++.-++.++ |.
T Consensus 122 ~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi 201 (267)
T COG4167 122 PEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI 201 (267)
T ss_pred hHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc
Confidence 45566789999999998 47889999999999999999999999999999999999999999999999999999865 88
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+-|.++.|. ..+.+++|.|+||+. |++++.|++.+++.
T Consensus 202 SyiYV~Qhl-G~iKHi~D~viVM~E-G~vvE~G~t~~v~a 239 (267)
T COG4167 202 SYIYVTQHI-GMIKHISDQVLVMHE-GEVVERGSTADVLA 239 (267)
T ss_pred eEEEEechh-hHhhhhcccEEEEec-CceeecCChhhhhc
Confidence 999999997 488999999999997 99999999998764
No 339
>KOG0059|consensus
Probab=100.00 E-value=1.1e-38 Score=295.70 Aligned_cols=190 Identities=27% Similarity=0.461 Sum_probs=173.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+|+|||||||++|+|+|..+ |++|+++++|.++... ..++.+||.||.+.+++.+|.+|++.+.++.+.. .+
T Consensus 597 LG~NGAGKtT~f~mltG~~~-~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~ 672 (885)
T KOG0059|consen 597 LGVNGAGKTTTFKMLTGETK-PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PR 672 (885)
T ss_pred ecCCCCCchhhHHHHhCCcc-CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---Ch
Confidence 59999999999999999998 7999999999998542 2567799999999999999999999999887642 34
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
....+.++.+++.++|.+.++++++.+|||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++++++++|+.+|
T Consensus 673 ~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aii 752 (885)
T KOG0059|consen 673 SDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAII 752 (885)
T ss_pred hHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999998877999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
++||.+ +++...|||+.+|.+ |++...|+++++...|.
T Consensus 753 LTSHsM-eE~EaLCtR~aImv~-G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 753 LTSHSM-EEAEALCTRTAIMVI-GQLRCIGSPQELKSRYG 790 (885)
T ss_pred EEcCCH-HHHHHHhhhhheeec-CeeEEecChHHHHhhcC
Confidence 999996 589999999999998 88888899999987764
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.8e-38 Score=283.27 Aligned_cols=163 Identities=28% Similarity=0.321 Sum_probs=137.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEE-----------ECCeeCCcc-----cccceEEEEecCCCCCCC---CCHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEIL-----------LNGCPISRT-----VMSRISGYVAQQDFLIEE---LTVLEH 61 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~-----------~~g~~~~~~-----~~~~~~~~v~q~~~~~~~---ltv~e~ 61 (197)
+||||||||||+|+|+|+++ |++|+|. ++|.++... .....+++.+|...++|. .||.|+
T Consensus 105 vG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~ 183 (590)
T PRK13409 105 LGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVREL 183 (590)
T ss_pred ECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHH
Confidence 69999999999999999998 7999997 899887431 111235666665433332 299998
Q ss_pred HHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy4235 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV 141 (197)
Q Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i 141 (197)
+.+. .....+.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||++||+.++.++
T Consensus 184 l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l 251 (590)
T PRK13409 184 LKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV 251 (590)
T ss_pred HHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 8631 1235688999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 142 VNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 142 ~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
.++|+++++ +.++|++||+.. .+..+||++++|.+
T Consensus 252 ~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 252 ARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 999999988 999999999975 78899999999965
No 341
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.9e-38 Score=245.34 Aligned_cols=180 Identities=22% Similarity=0.280 Sum_probs=160.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEec-CCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-QDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q-~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
||+||||||||+|+|+|.++ |++|+|.++|.-. ++.. ...+.|.+|.+||+.+...... ...++.
T Consensus 59 iG~NGaGKSTLlkliaGi~~-Pt~G~v~v~G~v~----------~li~lg~Gf~pelTGreNi~l~~~~~G---~~~~ei 124 (249)
T COG1134 59 IGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVA----------PLIELGAGFDPELTGRENIYLRGLILG---LTRKEI 124 (249)
T ss_pred ECCCCCcHHHHHHHHhCccC-CCCceEEEcceEe----------hhhhcccCCCcccchHHHHHHHHHHhC---ccHHHH
Confidence 69999999999999999999 7999999998642 2222 2345677999999998766542 345678
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
++.++++.++-+|.++.+.|++.+|.||+-|+++|.|...+|++||+||-.+.-|+.-+++..+.++++.+++.|+|++|
T Consensus 125 ~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VS 204 (249)
T COG1134 125 DEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVS 204 (249)
T ss_pred HHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
|++. .+.++||++++|++ |++...|+++++.+.|.
T Consensus 205 Hd~~-~I~~~Cd~~i~l~~-G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 205 HDLG-AIKQYCDRAIWLEH-GQIRMEGSPEEVIPAYE 239 (249)
T ss_pred CCHH-HHHHhcCeeEEEeC-CEEEEcCCHHHHHHHHH
Confidence 9975 89999999999998 99999999999998874
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-37 Score=239.08 Aligned_cols=191 Identities=27% Similarity=0.341 Sum_probs=160.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||.++|+|.-.. +++|+|.++|+++... ..+.-+...||.|.=+|..|+.+.|..+.+........
T Consensus 36 MGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~ 115 (251)
T COG0396 36 MGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc
Confidence 699999999999999997421 5899999999998643 23345789999999999999999999876543211111
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 76 WLELNKTITRVMENLGINH-RRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~-~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
..+....+.+.++.+++++ ++++.+. .+|||||+|..|+.+++.+|++.|||||-||||..+-+.+.+.++.++.++.
T Consensus 116 ~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~ 195 (251)
T COG0396 116 LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195 (251)
T ss_pred cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCC
Confidence 2345677889999999986 7788775 6999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcchHHhhc--CeEEEEeCCcEEEEecChhHHHhhh
Q psy4235 154 IVICAIHQPTSGVFEKF--DTVSLLAHGGLLAYHGQVSKVLKHF 195 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~--d~v~~l~~gg~i~~~g~~~~~~~~~ 195 (197)
+++++||.. .+..+. |++.+|.+ |+|+..|.+ ++..++
T Consensus 196 ~~liITHy~--rll~~i~pD~vhvl~~-GrIv~sG~~-el~~~l 235 (251)
T COG0396 196 GVLIITHYQ--RLLDYIKPDKVHVLYD-GRIVKSGDP-ELAEEL 235 (251)
T ss_pred eEEEEecHH--HHHhhcCCCEEEEEEC-CEEEecCCH-HHHHHH
Confidence 999999985 466776 99999998 999999999 666554
No 343
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-37 Score=239.52 Aligned_cols=119 Identities=24% Similarity=0.286 Sum_probs=107.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++|.+ ++|++|+..
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~---------i~~~~q~~~----------------------------- 71 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQLI-PNGDNDEWDGIT---------PVYKPQYID----------------------------- 71 (177)
T ss_pred ECCCCChHHHHHHHHHcCCC-CCCcEEEECCEE---------EEEEcccCC-----------------------------
Confidence 59999999999999999998 799999999853 688887532
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~iii~t 159 (197)
||+|||||++|||||+.+|++++|||||++||+.+++.+.+.++++++++ .++|++|
T Consensus 72 ----------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivs 129 (177)
T cd03222 72 ----------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129 (177)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999997765 8999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcE
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~ 181 (197)
|+.. .+..+||++++|+++..
T Consensus 130 H~~~-~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 130 HDLA-VLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHH-HHHHhCCEEEEEcCCCc
Confidence 9974 67889999999987443
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.5e-37 Score=280.65 Aligned_cols=173 Identities=20% Similarity=0.334 Sum_probs=140.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+|+|+++ |++|+|.+++. ..+||++|++ ++.+++.++..+...... ... ..
T Consensus 541 vG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~-~~~----~~ 604 (718)
T PLN03073 541 VGPNGIGKSTILKLISGELQ-PSSGTVFRSAK--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCF-PGV----PE 604 (718)
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCCceEEECCc--------eeEEEEeccc--cccCCcchhHHHHHHHhc-CCC----CH
Confidence 69999999999999999998 79999998652 3589999985 344566666443221111 011 13
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
+.+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++ . .|+|++|
T Consensus 605 ~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivS 681 (718)
T PLN03073 605 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVS 681 (718)
T ss_pred HHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEE
Confidence 5678899999997 4678999999999999999999999999999999999999999999998888765 3 4999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHhh
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLKH 194 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~~ 194 (197)
|+.. .+..+||++++|.+ |+++ +.|++++..+.
T Consensus 682 Hd~~-~i~~~~drv~~l~~-G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 682 HDEH-LISGSVDELWVVSE-GKVTPFHGTFHDYKKT 715 (718)
T ss_pred CCHH-HHHHhCCEEEEEEC-CEEEEeCCCHHHHHHH
Confidence 9974 78899999999987 7776 78888876554
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-37 Score=301.16 Aligned_cols=176 Identities=24% Similarity=0.351 Sum_probs=148.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|+++ .+|+|++||.++.. ..+++.++||||++.+|+. |+++||..+.. .
T Consensus 1251 vGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~------~--- 1318 (1490)
T TIGR01271 1251 LGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQ------W--- 1318 (1490)
T ss_pred ECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcccC------C---
Confidence 69999999999999999975 68999999999864 3467889999999999998 99999964321 1
Q ss_pred HHHHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRRQ-----------VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
..+.+.++++.+++.+... ....+||||||||++|||||+++|+|||||||||+||+.+...|.+.|+
T Consensus 1319 -tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1319 -SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred -CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1345667777776644322 2335799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.. .++|+|+++|++. ....||+|++|++ |++++.|+|+++++
T Consensus 1398 ~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1398 QSF-SNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCHHHHHc
Confidence 875 4799999999974 3566999999987 99999999999874
No 346
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-38 Score=237.11 Aligned_cols=156 Identities=31% Similarity=0.443 Sum_probs=139.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
.||||||||||||+|+|+.+ |++|+|+++|.++... ...+..-|+--.+.+=+.+||+||+.|....+.. .
T Consensus 34 ~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~ 106 (209)
T COG4133 34 TGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------G 106 (209)
T ss_pred ECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------C
Confidence 39999999999999999999 7999999999998653 2445667888888889999999999998765532 1
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
....+.+.++.+||....|.+++.||.|||+||+|||-++..+++.||||||++||......+..++..-..+|..||.+
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllt 186 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186 (209)
T ss_pred chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 23568899999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred ecCCc
Q psy4235 159 IHQPT 163 (197)
Q Consensus 159 th~~~ 163 (197)
||++.
T Consensus 187 tHq~l 191 (209)
T COG4133 187 THQPL 191 (209)
T ss_pred cCCcc
Confidence 99975
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=278.46 Aligned_cols=177 Identities=24% Similarity=0.282 Sum_probs=137.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHH-------------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAK------------- 67 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~------------- 67 (197)
+||||||||||||+|+|.++ |++|+|.++|.. .++|++|++..+. .|+.+++.-...
T Consensus 33 vG~NGsGKSTLLkiL~G~~~-pd~G~I~~~~~~--------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~ 102 (638)
T PRK10636 33 VGKNGCGKSTLLALLKNEIS-ADGGSYTFPGNW--------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDAN 102 (638)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEecCCC--------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHh
Confidence 69999999999999999988 799999998742 3788888643332 466554431100
Q ss_pred ----------ccC-CccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy4235 68 ----------LTM-DRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135 (197)
Q Consensus 68 ----------~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~ 135 (197)
... ...........++.++++.+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~ 182 (638)
T PRK10636 103 ERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL 182 (638)
T ss_pred ccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCH
Confidence 000 00000011235688899999997 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHH
Q psy4235 136 YSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVL 192 (197)
Q Consensus 136 ~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~ 192 (197)
.++.++.++|+++ +.+||++|||. .++..+||++++|++ |++ .+.|+.+...
T Consensus 183 ~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~L~~-G~i~~~~g~~~~~~ 235 (638)
T PRK10636 183 DAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKIIHIEQ-QSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEEEEeC-CEEEEecCCHHHHH
Confidence 9999999999876 46999999997 478899999999998 666 4677776543
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.9e-37 Score=279.16 Aligned_cols=163 Identities=18% Similarity=0.325 Sum_probs=133.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ +++|+|.+++ ++.++|++|++.+++. |++||+.++......... ....
T Consensus 484 vG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~--~~~~ 551 (659)
T TIGR00954 484 CGPNGCGKSSLFRILGELWP-VYGGRLTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRR--GLSD 551 (659)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCeEeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhcc--CCCH
Confidence 69999999999999999987 7999998763 3568999999998887 999999875321100000 0113
Q ss_pred HHHHHHHHHcCCccccccc---------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 81 KTITRVMENLGINHRRQVQ---------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~---------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
+.+.++++.+++.+..+++ ..+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++.
T Consensus 552 ~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--- 628 (659)
T TIGR00954 552 KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--- 628 (659)
T ss_pred HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---
Confidence 4577889999987766553 3789999999999999999999999999999999999999999988763
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGG 180 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg 180 (197)
+.|+|++||+.. ..+.||++++|+.+|
T Consensus 629 ~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 629 GITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred CCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 789999999974 468899999997544
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.8e-36 Score=232.58 Aligned_cols=134 Identities=25% Similarity=0.324 Sum_probs=113.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+|. +++|++.++|... . ..++.++|++|
T Consensus 27 ~G~nG~GKSTLl~~il-----~~~G~v~~~~~~~-~-~~~~~~~~~~q-------------------------------- 67 (176)
T cd03238 27 TGVSGSGKSTLVNEGL-----YASGKARLISFLP-K-FSRNKLIFIDQ-------------------------------- 67 (176)
T ss_pred ECCCCCCHHHHHHHHh-----hcCCcEEECCccc-c-cccccEEEEhH--------------------------------
Confidence 5999999999999985 2689999987632 1 11234677776
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 81 KTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTE--PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 81 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
.++++.+++.. ..++++.+||+|||||++|||||+.+ |+++||||||++||+.+++.+.+.|+++++++.+||+
T Consensus 68 ---~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIi 144 (176)
T cd03238 68 ---LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144 (176)
T ss_pred ---HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 13567788875 47889999999999999999999999 9999999999999999999999999999777899999
Q ss_pred EecCCcchHHhhcCeEEEEeC
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~ 178 (197)
+||+.. .+ ..||++++|.+
T Consensus 145 vSH~~~-~~-~~~d~i~~l~~ 163 (176)
T cd03238 145 IEHNLD-VL-SSADWIIDFGP 163 (176)
T ss_pred EeCCHH-HH-HhCCEEEEECC
Confidence 999974 44 68999999976
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-36 Score=273.34 Aligned_cols=176 Identities=30% Similarity=0.375 Sum_probs=134.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHH---------------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFM--------------- 65 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~--------------- 65 (197)
+||||||||||||+|+|+++ |++|+|.++|.. .++|++|.+......++.+++...
T Consensus 35 vG~NGsGKSTLLriiaG~~~-p~~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 105 (635)
T PRK11147 35 VGRNGAGKSTLMKILNGEVL-LDDGRIIYEQDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDIS 105 (635)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCCeEEEeCCCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 69999999999999999988 799999998632 256777654332334555543210
Q ss_pred ---------------HHccC-CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy4235 66 ---------------AKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP 129 (197)
Q Consensus 66 ---------------~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP 129 (197)
..... ...........++.++++.+|+. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEP 183 (635)
T PRK11147 106 HLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183 (635)
T ss_pred HHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00000 00000001245678899999996 3889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHH
Q psy4235 130 TTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVL 192 (197)
Q Consensus 130 ts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~ 192 (197)
|++||+.++..+.++|+++. .+||++|||. .++..+||++++|++ |+++ +.|++++.+
T Consensus 184 t~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l~~~~d~i~~L~~-G~i~~~~g~~~~~~ 242 (635)
T PRK11147 184 TNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFIRNMATRIVDLDR-GKLVSYPGNYDQYL 242 (635)
T ss_pred CCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHHHHhcCeEEEEEC-CEEEEecCCHHHHH
Confidence 99999999999999999873 5999999997 478899999999998 7765 568876543
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-37 Score=223.79 Aligned_cols=170 Identities=27% Similarity=0.322 Sum_probs=142.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCC--ceeEEEECCeeCCccc-ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGL--VQGEILLNGCPISRTV-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~--~~G~i~~~g~~~~~~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+..+.|.+.+. .+|++++|+++++..+ -+|++|++||++-+||.++|.+|+.|..... .+..
T Consensus 34 MGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~----~KG~ 109 (213)
T COG4136 34 MGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT----LKGN 109 (213)
T ss_pred ECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc----cccH
Confidence 6999999999999999988632 4899999999987543 4577999999999999999999999865322 1223
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL-ACESRIVI 156 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l-~~~~~~ii 156 (197)
..+..++..+++.+|....++.|.+||||||-||++-|+|+..|+.++||||||.||..-+.++.++.-.- +.-|..++
T Consensus 110 aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv 189 (213)
T COG4136 110 ARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTV 189 (213)
T ss_pred HHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 45677889999999999999999999999999999999999999999999999999999999999987654 45589999
Q ss_pred EEecCCcchHHhhcCeEEEE
Q psy4235 157 CAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l 176 (197)
.+|||.. ++ ..-.||+-+
T Consensus 190 ~VTHD~~-Dv-pagsrVie~ 207 (213)
T COG4136 190 QVTHDLQ-DV-PAGSRVIEM 207 (213)
T ss_pred EEecccc-cC-CCCCeeeee
Confidence 9999975 33 344455433
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.6e-36 Score=224.28 Aligned_cols=112 Identities=34% Similarity=0.443 Sum_probs=103.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |++|+|+++|. +.++|++|
T Consensus 32 ~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~~-------------------------------- 70 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGELE-PDEGIVTWGST--------VKIGYFEQ-------------------------------- 70 (144)
T ss_pred ECCCCCCHHHHHHHHcCCCC-CCceEEEECCe--------EEEEEEcc--------------------------------
Confidence 59999999999999999998 79999999984 35899998
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
||+||+||++|||||+.+|+++||||||++||+.++..+.+.++++ +.++|++||
T Consensus 71 ----------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th 125 (144)
T cd03221 71 ----------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSH 125 (144)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 9999999999999999999999999999999999999999999887 369999999
Q ss_pred CCcchHHhhcCeEEEEeCCc
Q psy4235 161 QPTSGVFEKFDTVSLLAHGG 180 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg 180 (197)
+.. .+..+||++++|++ |
T Consensus 126 ~~~-~~~~~~d~v~~l~~-g 143 (144)
T cd03221 126 DRY-FLDQVATKIIELED-G 143 (144)
T ss_pred CHH-HHHHhCCEEEEEeC-C
Confidence 974 67889999999987 5
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.9e-36 Score=262.84 Aligned_cols=178 Identities=31% Similarity=0.346 Sum_probs=146.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-c-cc----
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-R-RT---- 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~-~~---- 74 (197)
||+||||||||||+|+|... |++|+|...+. -+++|++|++.+.+..||.+.+......... . ..
T Consensus 35 vG~NGaGKSTLLkilaG~~~-~~~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~ 105 (530)
T COG0488 35 VGRNGAGKSTLLKILAGELE-PDSGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAY 105 (530)
T ss_pred ECCCCCCHHHHHHHHcCCCc-CCCCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHH
Confidence 69999999999999999998 79999987532 3489999999999999999988764321000 0 00
Q ss_pred ---------------------cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy4235 75 ---------------------TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGL 133 (197)
Q Consensus 75 ---------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~L 133 (197)
..-..+.++..++..+|+... ++++++||||||.||+||+||+.+|++||||||||.|
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHL 184 (530)
T COG0488 106 ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184 (530)
T ss_pred HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 000123567788888998877 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 134 DSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 134 D~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
|..+..++.+.|+++ +| |+|+||||- .++-+.|++|+-++.|....|.|..+...
T Consensus 185 D~~~i~WLe~~L~~~--~g-tviiVSHDR-~FLd~V~t~I~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 185 DLESIEWLEDYLKRY--PG-TVIVVSHDR-YFLDNVATHILELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred CHHHHHHHHHHHHhC--CC-cEEEEeCCH-HHHHHHhhheEEecCCceeEecCCHHHHH
Confidence 999999999999865 35 999999995 69999999999999855567888877554
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.8e-35 Score=285.86 Aligned_cols=175 Identities=20% Similarity=0.291 Sum_probs=138.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH-
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL- 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~- 79 (197)
+|||||||||||++|+|+++ |++|+|.++| .++|++|++.+++. ||+||+.|+.... ........
T Consensus 458 ~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI~~g~~~~--~~~~~~~~~ 523 (1490)
T TIGR01271 458 AGSTGSGKSSLLMMIMGELE-PSEGKIKHSG----------RISFSPQTSWIMPG-TIKDNIIFGLSYD--EYRYTSVIK 523 (1490)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECC----------EEEEEeCCCccCCc-cHHHHHHhccccc--hHHHHHHHH
Confidence 69999999999999999998 7999999987 38999999999886 9999999864211 00000000
Q ss_pred HHHHHHHHHHcCC--cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEE
Q psy4235 80 NKTITRVMENLGI--NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL-LKQLACESRIVI 156 (197)
Q Consensus 80 ~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~~~ii 156 (197)
.....+.++.+.. ......++.+||||||||++||||++.+|+++||||||++||+.+.+.+++. +..+. +++|+|
T Consensus 524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvi 602 (1490)
T TIGR01271 524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRI 602 (1490)
T ss_pred HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEE
Confidence 0112233333322 2234567889999999999999999999999999999999999999999974 66654 489999
Q ss_pred EEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++||++. . ...||++++|++ |+++..|+++++..
T Consensus 603 lvtH~~~-~-~~~ad~ii~l~~-g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 603 LVTSKLE-H-LKKADKILLLHE-GVCYFYGTFSELQA 636 (1490)
T ss_pred EEeCChH-H-HHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999974 4 456999999987 88989999988764
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.2e-36 Score=288.84 Aligned_cols=168 Identities=21% Similarity=0.379 Sum_probs=135.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||+|||||||+++|+|.++ |++|.+. .+++.++||+|++.+|+. |++|||.|+... + +
T Consensus 649 vG~sGSGKSTLl~lLlG~~~-~~~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~------~----~ 707 (1495)
T PLN03232 649 VGGTGEGKTSLISAMLGELS-HAETSSV---------VIRGSVAYVPQVSWIFNA-TVRENILFGSDF------E----S 707 (1495)
T ss_pred ECCCCCcHHHHHHHHhCCCc-ccCCCEE---------EecCcEEEEcCccccccc-cHHHHhhcCCcc------C----H
Confidence 69999999999999999998 6888663 235679999999999987 999999986421 1 2
Q ss_pred HHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH
Q psy4235 81 KTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL-LKQL 148 (197)
Q Consensus 81 ~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l 148 (197)
+++.++++..++. .....+..+||||||||++||||++.+|+++|||||||+||+.+.+.+++. ++..
T Consensus 708 e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~ 787 (1495)
T PLN03232 708 ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787 (1495)
T ss_pred HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence 3344455544443 223344567999999999999999999999999999999999999988765 5543
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.+++|+|++||+.. ....||+|++|++ |++++.|+.+++..
T Consensus 788 -l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 788 -LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTFAELSK 828 (1495)
T ss_pred -hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCHHHHHh
Confidence 35789999999974 4678999999987 99999999988764
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-35 Score=288.67 Aligned_cols=167 Identities=18% Similarity=0.362 Sum_probs=137.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCce-eEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~-G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||+|||||||+++|+|.++ |++ |+|.+ +..++||+|++.+|+. |++|||.|+... .
T Consensus 649 vG~sGSGKSTLl~lLlG~~~-~~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~----------d 706 (1622)
T PLN03130 649 VGSTGEGKTSLISAMLGELP-PRSDASVVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSPF----------D 706 (1622)
T ss_pred ECCCCCCHHHHHHHHHHhhc-cCCCceEEE----------cCeEEEEcCccccCCC-CHHHHHhCCCcc----------c
Confidence 69999999999999999998 799 89975 3568999999999987 999999986421 1
Q ss_pred HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHH
Q psy4235 80 NKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN-LLKQ 147 (197)
Q Consensus 80 ~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~-~l~~ 147 (197)
++++.++++..++. .....+..+||||||||++||||++.+|+++|||||||+||+.+.+.+++ .++.
T Consensus 707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~ 786 (1622)
T PLN03130 707 PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786 (1622)
T ss_pred HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhH
Confidence 23445555554443 23334556799999999999999999999999999999999999988864 5655
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+. +++|+|++||+.. ....||+|++|++ |++++.|+.+++.+
T Consensus 787 ~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 787 EL-RGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTYEELSN 828 (1622)
T ss_pred Hh-cCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCHHHHHh
Confidence 43 5799999999973 5788999999987 99999999998864
No 357
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.1e-35 Score=285.90 Aligned_cols=177 Identities=24% Similarity=0.362 Sum_probs=139.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|||||||||||++|+|.++ |++|+|.+. +.++|++|++.+++ .|++||+.|+..... .........
T Consensus 692 iG~nGsGKSTLL~~i~G~~~-~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~enI~~~~~~~~-~~~~~~~~~ 758 (1560)
T PTZ00243 692 LGATGSGKSTLLQSLLSQFE-ISEGRVWAE----------RSIAYVPQQAWIMN-ATVRGNILFFDEEDA-ARLADAVRV 758 (1560)
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCcEEEEC----------CeEEEEeCCCccCC-CcHHHHHHcCChhhH-HHHHHHHHH
Confidence 69999999999999999998 799999863 45899999998875 599999998532110 000000011
Q ss_pred HHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 81 KTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 81 ~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+++.++.+ |+....++++.+||||||||++|||||+.+|+++||||||++||+.+.+.+++.+......++|+|++
T Consensus 759 ~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlv 838 (1560)
T PTZ00243 759 SQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA 838 (1560)
T ss_pred hhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 1234456666 67667788899999999999999999999999999999999999999998877442222358999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||++. . ...||++++|++ |++.+.|+++++++
T Consensus 839 TH~~~-~-~~~ad~ii~l~~-G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 839 THQVH-V-VPRADYVVALGD-GRVEFSGSSADFMR 870 (1560)
T ss_pred eCCHH-H-HHhCCEEEEEEC-CEEEEecCHHHHHh
Confidence 99974 3 478999999997 89999999988753
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-35 Score=286.66 Aligned_cols=172 Identities=21% Similarity=0.358 Sum_probs=137.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|.++ |++|+|.++| .++|++|++.+++ .|++||+.|+... ..+..+
T Consensus 670 vG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~~~~~ 731 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMD-KVEGHVHMKG----------SVAYVPQQAWIQN-DSLRENILFGKAL------NEKYYQ 731 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCc-cCCcEEEECC----------EEEEEcCCccccC-CcHHHHhhcCCcc------CHHHHH
Confidence 69999999999999999998 7999999987 3899999998876 5999999986321 111111
Q ss_pred HHHH--HHHHHcC-----CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hC
Q psy4235 81 KTIT--RVMENLG-----INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA--CE 151 (197)
Q Consensus 81 ~~~~--~~l~~~~-----l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~ 151 (197)
+.++ .+.+.++ .+.....++.+||||||||++||||++.+|+++|||||||+||+.+.+.+++.+.+.. .+
T Consensus 732 ~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~ 811 (1522)
T TIGR00957 732 QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811 (1522)
T ss_pred HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhc
Confidence 1111 1122222 2334567788999999999999999999999999999999999999999999997532 34
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++|+|++||+.. . ...||++++|++ |+++..|+++++.+
T Consensus 812 ~~tvIlvTH~~~-~-l~~~D~ii~l~~-G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 812 NKTRILVTHGIS-Y-LPQVDVIIVMSG-GKISEMGSYQELLQ 850 (1522)
T ss_pred CCEEEEEeCChh-h-hhhCCEEEEecC-CeEEeeCCHHHHHh
Confidence 789999999974 4 456999999987 99999999988764
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=223.07 Aligned_cols=184 Identities=26% Similarity=0.369 Sum_probs=146.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee---CC-----cc----cccceEEEEecCCC--CCCCCC----HHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP---IS-----RT----VMSRISGYVAQQDF--LIEELT----VLEHL 62 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~---~~-----~~----~~~~~~~~v~q~~~--~~~~lt----v~e~l 62 (197)
+|+|||||||||+||++.+. |++|+|.+...+ .+ .. -.+..+|||.|+|. +-...+ +-|-+
T Consensus 38 VGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERl 116 (258)
T COG4107 38 VGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL 116 (258)
T ss_pred EecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhH
Confidence 59999999999999999998 799999986432 21 11 12334799999975 222222 33333
Q ss_pred HHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy4235 63 QFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV 141 (197)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i 141 (197)
+-....+ .-..++.+.+|++.+.++ ...+..|..+||||+||+.|||-|+..|+++++||||.|||...+.++
T Consensus 117 ma~G~RH------YG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARL 190 (258)
T COG4107 117 MAIGARH------YGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 190 (258)
T ss_pred Hhhhhhh------hhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHH
Confidence 2211111 124567788999999997 567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 142 VNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 142 ~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++++.+..+ +.+++|+|||.. .+.-.+||..+|++ |.+++.|-.+.++.
T Consensus 191 LDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~-g~vve~GLTDrvLD 241 (258)
T COG4107 191 LDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQ-GQVVESGLTDRVLD 241 (258)
T ss_pred HHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecC-CCEecccccccccc
Confidence 9999999876 889999999974 77788999999987 88888888877654
No 360
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-35 Score=219.81 Aligned_cols=122 Identities=45% Similarity=0.674 Sum_probs=110.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|+++ +++|+|+++|.++... .+.+.++|++|
T Consensus 31 ~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q----------------------------- 80 (157)
T cd00267 31 VGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQ----------------------------- 80 (157)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEee-----------------------------
Confidence 59999999999999999998 7999999999887532 23456889988
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
||+||+||++|||+++.+|++++|||||++||+.++..+.+.+++++..+.++++
T Consensus 81 -------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~ 135 (157)
T cd00267 81 -------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135 (157)
T ss_pred -------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999999999999998776789999
Q ss_pred EecCCcchHHhhcCeEEEEeC
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~ 178 (197)
+||+.. .+...||+++++.+
T Consensus 136 ~sh~~~-~~~~~~d~i~~l~~ 155 (157)
T cd00267 136 VTHDPE-LAELAADRVIVLKD 155 (157)
T ss_pred EeCCHH-HHHHhCCEEEEEeC
Confidence 999974 77888999999986
No 361
>KOG0056|consensus
Probab=100.00 E-value=1.4e-35 Score=251.47 Aligned_cols=183 Identities=25% Similarity=0.438 Sum_probs=147.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||+||||++|++..+.. ..+|.|.+||+++.. ..+|+.||.||||..+|++ |+..|+.|+.....+ +
T Consensus 570 VG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~Asn-----e 642 (790)
T KOG0056|consen 570 VGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASN-----E 642 (790)
T ss_pred ECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCCh-----H
Confidence 69999999999999998887 789999999999864 4577889999999999988 999999986432221 1
Q ss_pred HHHHH--HHHHHHH-cCCcc----cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKT--ITRVMEN-LGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~--~~~~l~~-~~l~~----~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+. +..+-++ ++..+ ....+.-.|||||||||+|||++++.|.+++|||.||+||..+.+.|...|.++++
T Consensus 643 evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca 722 (790)
T KOG0056|consen 643 EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA 722 (790)
T ss_pred HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc
Confidence 11111 1122222 23333 33345557999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
++|.|++.|... . .-.+|.|+++++ |+|++.|..+|++..
T Consensus 723 -~RTtIVvAHRLS-T-ivnAD~ILvi~~-G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 723 -NRTTIVVAHRLS-T-IVNADLILVISN-GRIVERGRHEELLKR 762 (790)
T ss_pred -CCceEEEeeeeh-h-eecccEEEEEeC-CeEeecCcHHHHHhc
Confidence 678888999975 3 456999999988 999999999998764
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-35 Score=242.56 Aligned_cols=188 Identities=24% Similarity=0.377 Sum_probs=149.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||+|+||||++++|..++. +.+|.|.++|+++.. ...++.||.|||+..+|.+ |...|+.++............
T Consensus 295 Vg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aa 372 (497)
T COG5265 295 VGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAA 372 (497)
T ss_pred EeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHH
Confidence 59999999999999999998 799999999999854 3567889999999999987 999999986432211111111
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+...++.+ |++.....+.-.|||||||||+|||+++++|++|+|||.||+||..+.++|...|++.+ .|.|.
T Consensus 373 a~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rtt 451 (497)
T COG5265 373 AEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTT 451 (497)
T ss_pred HHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeE
Confidence 1122333444443 23333344455799999999999999999999999999999999999999999999987 57899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+++.|... . .--+|.+++|++ |+|++.|+.++++..
T Consensus 452 lviahrls-t-i~~adeiivl~~-g~i~erg~h~~ll~~ 487 (497)
T COG5265 452 LVIAHRLS-T-IIDADEIIVLDN-GRIVERGTHEELLAA 487 (497)
T ss_pred EEEeehhh-h-ccCCceEEEeeC-CEEEecCcHHHHHHc
Confidence 99999975 3 455899999998 999999999998764
No 363
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=2.8e-34 Score=224.55 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=121.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc---------eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV---------QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~---------~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+.. +. .|++.+.|++.......+.++|+||++..+ |. .
T Consensus 28 ~G~nGsGKStll~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~--- 91 (197)
T cd03278 28 VGPNGSGKSNIIDAIRWVLG-EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--I--- 91 (197)
T ss_pred ECCCCCCHHHHHHHHHHHhc-cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--E---
Confidence 59999999999999999875 23 346778887764433456799999998766 11 0
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
. ..+++.++++. .+..++++.+||+|||||++||++++ .+|++++|||||++||+..+..+.+.|++
T Consensus 92 -~-----~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~ 162 (197)
T cd03278 92 -I-----SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKE 162 (197)
T ss_pred -E-----ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 02355666766 45678899999999999999999997 46799999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCcchHHhhcCeEEEEeCC
Q psy4235 148 LACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179 (197)
Q Consensus 148 l~~~~~~iii~th~~~~~~~~~~d~v~~l~~g 179 (197)
+++ +.+||++||++. . ...||+++.+...
T Consensus 163 ~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~~ 191 (197)
T cd03278 163 FSK-ETQFIVITHRKG-T-MEAADRLYGVTMQ 191 (197)
T ss_pred hcc-CCEEEEEECCHH-H-HhhcceEEEEEec
Confidence 865 689999999974 4 5789999998763
No 364
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1e-35 Score=223.39 Aligned_cols=181 Identities=27% Similarity=0.369 Sum_probs=156.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
||||||||||||-.++|+.+ -+|+|.++|.++.. ..+.+.-+|+.|+..-...|.|+.++.+.- +..
T Consensus 31 iGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q--------P~~ 100 (248)
T COG4138 31 VGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ--------PDK 100 (248)
T ss_pred ECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC--------chH
Confidence 69999999999999999975 69999999999853 234455689999877777789999887632 123
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT-------EPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+....++++...+++++++.+.+..|||||.|||-+|...++ ..++|++|||.++||...+..+..+|.+++.
T Consensus 101 ~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~ 180 (248)
T COG4138 101 TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ 180 (248)
T ss_pred HHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh
Confidence 445678899999999999999999999999999999998764 3479999999999999999999999999999
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|.+||+++||.+ .-.+.+|+++.+.. |++...|..+|++.
T Consensus 181 ~G~~vims~HDLN-hTLrhA~~~wLL~r-G~l~~~G~~~eVlt 221 (248)
T COG4138 181 QGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASGRREEVLT 221 (248)
T ss_pred CCcEEEEeccchh-hHHHHHHHHHHHhc-CeEEeecchhhhcC
Confidence 9999999999987 67788999999988 99999999988764
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.4e-34 Score=261.21 Aligned_cols=181 Identities=24% Similarity=0.236 Sum_probs=131.6
Q ss_pred CCCCCCcHHHHHHHHhcCc---CCCceeEEEECCeeCCccc-----------------ccceEEEEecCCCCCCCCCHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRV---KGLVQGEILLNGCPISRTV-----------------MSRISGYVAQQDFLIEELTVLE 60 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~---~~~~~G~i~~~g~~~~~~~-----------------~~~~~~~v~q~~~~~~~ltv~e 60 (197)
+||||||||||||+|+|.. . |++|+|.+.++.+.... .++.++|++|++.+... ++.+
T Consensus 209 vG~NGsGKSTLLr~l~g~~~~g~-p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~ 286 (718)
T PLN03073 209 VGRNGTGKTTFLRYMAMHAIDGI-PKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETG 286 (718)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCC-CCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccc
Confidence 6999999999999999864 3 57899976554421100 11225677775433221 1111
Q ss_pred HH-----------------HHHHH-ccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCC
Q psy4235 61 HL-----------------QFMAK-LTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEP 121 (197)
Q Consensus 61 ~l-----------------~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p 121 (197)
+. .-... +.... .-....++.++++.+|+. +..++++.+||||||||++||+||+.+|
T Consensus 287 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p 363 (718)
T PLN03073 287 KGKGANKDGVDKDAVSQRLEEIYKRLELID---AYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEP 363 (718)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 11 00000 00000 002345677899999996 5578899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE-EecChhHH
Q psy4235 122 QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKV 191 (197)
Q Consensus 122 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~ 191 (197)
++|||||||++||+.++.++.++|+++ +.|+|++||+. ..+...||++++|++ |++. +.|+.++.
T Consensus 364 ~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~-~~l~~~~d~i~~l~~-g~i~~~~g~~~~~ 429 (718)
T PLN03073 364 DLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAR-EFLNTVVTDILHLHG-QKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEeCCCHHHH
Confidence 999999999999999999999999886 67999999997 478899999999998 7764 67777544
No 366
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.9e-33 Score=226.79 Aligned_cols=135 Identities=23% Similarity=0.328 Sum_probs=114.2
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhC-
Q psy4235 43 SGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTE- 120 (197)
Q Consensus 43 ~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~- 120 (197)
+.|..++...+..|||.|++.|+.... ...++.++++.+||.+ .+++++.+|||||+||++||++|+.+
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~ 188 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCC
Confidence 345555656667899999999876432 1245678999999987 58999999999999999999999996
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecCh
Q psy4235 121 --PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQV 188 (197)
Q Consensus 121 --p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~ 188 (197)
|+++||||||+|||+..+..+.+.|++++++|.|+|+++|++. .+ ..||+++.|. ++|++++.|++
T Consensus 189 ~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 7999999999999999999999999999888999999999974 44 6799999993 35999988864
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-34 Score=212.41 Aligned_cols=172 Identities=23% Similarity=0.301 Sum_probs=144.3
Q ss_pred CCCCCcHHHHHHHHhcCcCCCceeEEEEC--CeeCC-----cc---c-ccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 2 SPSGAGKTTLLAALNKRVKGLVQGEILLN--GCPIS-----RT---V-MSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~~~~~G~i~~~--g~~~~-----~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
||||||||||||+|.|.+. |++|+|++. |.-++ +. . .++.+|||.|--...|..+..|-++......
T Consensus 44 G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~- 121 (235)
T COG4778 44 GPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR- 121 (235)
T ss_pred CCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc-
Confidence 8999999999999999998 799999985 33232 11 1 2356899999988888888888877665432
Q ss_pred CccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
....+..+.++..++.++++.+. +.-.|..+||||+|||.|||.++.+-+||+|||||++||..+++-+.++|++.+
T Consensus 122 --gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K 199 (235)
T COG4778 122 --GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK 199 (235)
T ss_pred --CCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH
Confidence 23345567788999999999754 677899999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
.+|..++=+-||. +.-...|||++-+..
T Consensus 200 a~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 200 ARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred hcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 8999999999995 466778999988754
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4e-32 Score=216.64 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=90.7
Q ss_pred HHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 84 TRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 84 ~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
.++++.+++.+ ..++++.+||||||||++|||||+.+| ++|||||||++||+..+..+.+.|++++++|.|+|++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 56899999986 589999999999999999999999998 599999999999999999999999999877899999999
Q ss_pred CCcchHHhhcCeEEEE------eCCcEEEEec
Q psy4235 161 QPTSGVFEKFDTVSLL------AHGGLLAYHG 186 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l------~~gg~i~~~g 186 (197)
++. .+ .+||++++| ++ |+++++|
T Consensus 198 ~~~-~~-~~~d~i~~l~~~~~~~~-G~iv~~g 226 (226)
T cd03270 198 DED-TI-RAADHVIDIGPGAGVHG-GEIVAQG 226 (226)
T ss_pred CHH-HH-HhCCEEEEeCCCccccC-CEEEecC
Confidence 974 44 699999999 65 8888765
No 369
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=9.6e-34 Score=229.19 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=133.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCe-eCCc-----ccccceEEEEecCC---------CCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGC-PISR-----TVMSRISGYVAQQD---------FLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~-~~~~-----~~~~~~~~~v~q~~---------~~~~~ltv~e~l~~ 64 (197)
+||||||||||+++|++++. +. .|++++.+. ++-. ......+++++|++ .+.+.+||.+++.+
T Consensus 31 vG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~ 109 (251)
T cd03273 31 TGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVL 109 (251)
T ss_pred ECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEc
Confidence 69999999999999999987 44 568888776 4311 11234689999985 34567889888765
Q ss_pred HHHccCCccccHHHHHHHHHHHHHHcCCc--------------------ccccccCCCCCHHHHHHHHHHHHHh----hC
Q psy4235 65 MAKLTMDRRTTWLELNKTITRVMENLGIN--------------------HRRQVQISGLSGGQRKRLALAVQLL----TE 120 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------------------~~~~~~~~~LSgGq~qrv~ia~al~----~~ 120 (197)
......... ......+.+.++++.+++. +..++++.+||+|||||++||+||+ .+
T Consensus 110 ~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~ 188 (251)
T cd03273 110 GGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKP 188 (251)
T ss_pred CCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccC
Confidence 432111000 0112346788899999986 4456889999999999999999998 57
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 121 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~ 177 (197)
|+++|+||||++||+..+..+.+.|++++ +|.++|++||+. ++...||+++-+.
T Consensus 189 ~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 189 APMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 89999999999999999999999999985 478999999994 5678899998776
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2e-33 Score=206.99 Aligned_cols=114 Identities=44% Similarity=0.656 Sum_probs=99.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+||||||||+++|+|..+ |++|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 17 ~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~---------------- 79 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN---------------- 79 (137)
T ss_dssp EESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH----------------
T ss_pred EccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 59999999999999999998 699999999999865 2345679999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccccccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy4235 78 ELNKTITRVMENLGINHRRQVQI----SGLSGGQRKRLALAVQLLTEPQILFCDEPTT 131 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~----~~LSgGq~qrv~ia~al~~~p~llllDEPts 131 (197)
.....+.++++.+++.+..++.+ .+||+|||||++||+||+.+|+++|||||||
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12345778888888776555555 9999999999999999999999999999997
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=1.2e-32 Score=221.45 Aligned_cols=172 Identities=21% Similarity=0.324 Sum_probs=121.7
Q ss_pred CCCCCCcHHHHHHHHhc----------------CcCCCcee--------EEEECCee----CC--cccccceEEEEecCC
Q psy4235 1 MSPSGAGKTTLLAALNK----------------RVKGLVQG--------EILLNGCP----IS--RTVMSRISGYVAQQD 50 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g----------------~~~~~~~G--------~i~~~g~~----~~--~~~~~~~~~~v~q~~ 50 (197)
+||||||||||+++|++ ++. +.+| +|.+++.+ +. ....++.++|++|+.
T Consensus 29 ~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~ 107 (243)
T cd03272 29 VGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEY 107 (243)
T ss_pred ECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEE
Confidence 69999999999999983 333 3455 66666532 11 123456689999988
Q ss_pred CCCC-CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh----CCCEEE
Q psy4235 51 FLIE-ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT----EPQILF 125 (197)
Q Consensus 51 ~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~----~p~lll 125 (197)
.+++ .+|..|...+............ ......++.+.+++.+..++++.+||||||||++|||||+. +|+++|
T Consensus 108 ~l~~~~~t~~ei~~~l~~~gl~~~~~~--~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~ill 185 (243)
T cd03272 108 FLDKKNVTKNDVMNLLESAGFSRSNPY--YIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYL 185 (243)
T ss_pred EECCeEcCHHHHHHHHHHcCCCCCCCc--EEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 7776 4677666555443321110000 00001123334556666788999999999999999999974 589999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 126 CDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 126 lDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+||||++||+.+++.+.+.|+++++ +.++|+++|.. ++..+||++++|.-
T Consensus 186 lDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~~ 235 (243)
T cd03272 186 FDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVKF 235 (243)
T ss_pred EECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEEE
Confidence 9999999999999999999999865 66777766663 57899999998863
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9.7e-32 Score=235.81 Aligned_cols=171 Identities=26% Similarity=0.342 Sum_probs=143.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||+|||||||+|+|... |.+|+|.+.-. -.+||+.|+. .+.+..|+.|++.-.... ..
T Consensus 354 iG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~---------~~ 415 (530)
T COG0488 354 VGPNGAGKSTLLKLLAGELG-PLSGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGFPD---------GD 415 (530)
T ss_pred ECCCCCCHHHHHHHHhhhcc-cCCceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhCcc---------cc
Confidence 69999999999999999888 68999986421 3489999986 555778999988753211 01
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
+..+...|..|++. +...++++.||||||.|+.+|+.++.+|.+||||||||.||..+...+.+.|..+ ..|+|+|
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~V 492 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLV 492 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEE
Confidence 46788999999997 5578999999999999999999999999999999999999999999999999887 4699999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|||. .++...|++++.+.+ +...+.|..++..+.
T Consensus 493 SHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 493 SHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred eCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9996 699999999999986 555566888776543
No 373
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.98 E-value=1.6e-32 Score=215.76 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=120.4
Q ss_pred CCCCCCcHHHHHHHHh----cCcCCCceeEEEECCeeCCcccccceEEEEecCC-----CCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALN----KRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-----FLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~----g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-----~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|. |... +++|.+..+...+........+++++|++ .....+|+.+|+.+..
T Consensus 28 ~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~----- 101 (204)
T cd03240 28 VGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCH----- 101 (204)
T ss_pred ECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeec-----
Confidence 5999999999999995 8776 57776652222233333445689999987 3445568888876521
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR------LALAVQLLTEPQILFCDEPTTGLDSYSAN-NVVNL 144 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr------v~ia~al~~~p~llllDEPts~LD~~~~~-~i~~~ 144 (197)
+..+.+.+ ++++..||+||+|| ++||+|++.+|+++++||||++||+..+. .+.++
T Consensus 102 --------~~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~ 164 (204)
T cd03240 102 --------QGESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEI 164 (204)
T ss_pred --------hHHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 11222222 77889999999996 78999999999999999999999999999 99999
Q ss_pred HHHHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235 145 LKQLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGG 180 (197)
Q Consensus 145 l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg 180 (197)
|++++++ +.++|++||++. ....||+++.|.+.|
T Consensus 165 l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 165 IEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred HHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 9999876 789999999963 457899999997755
No 374
>KOG0054|consensus
Probab=99.98 E-value=6.3e-32 Score=253.93 Aligned_cols=168 Identities=24% Similarity=0.408 Sum_probs=143.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|+-|||||+||.+|.|-.+ ..+|+|.++|. ++|++|.|-+++. ||+|||.|+..+ ++
T Consensus 553 vG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~----------d~ 610 (1381)
T KOG0054|consen 553 VGPVGSGKSSLLSAILGEMP-KLSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY----------DE 610 (1381)
T ss_pred ECCCCCCHHHHHHHHhcCcc-cccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc----------cH
Confidence 69999999999999999998 79999999875 7999999999987 999999997543 23
Q ss_pred HHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 81 KTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
++.+++++...|... ...+.-+||||||||++||||+.++++++|||.|+|++|....+.+++-.-.-.
T Consensus 611 ~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~ 690 (1381)
T KOG0054|consen 611 ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL 690 (1381)
T ss_pred HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh
Confidence 556666666655432 234567899999999999999999999999999999999999999876665444
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
-+++|+|++||+. ...+.||.|++|++ |+|...|+.+|+.+
T Consensus 691 L~~KT~ILVTHql--~~L~~ad~Iivl~~-G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 691 LRGKTVILVTHQL--QFLPHADQIIVLKD-GKIVESGTYEELLK 731 (1381)
T ss_pred hcCCEEEEEeCch--hhhhhCCEEEEecC-CeEecccCHHHHHh
Confidence 4689999999975 46889999999987 99999999999874
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.98 E-value=1.2e-31 Score=211.99 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=118.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECC--eeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG--CPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g--~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|++.+..+..+....+. ..+........++++||++.... ++..+. ......
T Consensus 34 ~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~ 101 (213)
T cd03279 34 CGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQ 101 (213)
T ss_pred ECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec----------CCCHHH
Confidence 5999999999999999644323444444321 11222233456899999864211 111111 111111
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT----------EPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
..+.+ .+...++.+..++++.+||+||+||++||||++. +|+++||||||++||+.....+.+.++++
T Consensus 102 ~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~ 179 (213)
T cd03279 102 FTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI 179 (213)
T ss_pred HHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11111 2344456677789999999999999999999985 57899999999999999999999999999
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg 180 (197)
++++.|+|++||+.. .+..+||+++++++||
T Consensus 180 ~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 180 RTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 877899999999974 7889999999998854
No 376
>KOG0054|consensus
Probab=99.98 E-value=7.1e-32 Score=253.56 Aligned_cols=178 Identities=25% Similarity=0.330 Sum_probs=148.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|+.|||||||.++|-.+.. |.+|+|.|||.|+.. ..+|++++.+||+|.+|.+ |++.||.=+...
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e-~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~--------- 1240 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVE-PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY--------- 1240 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcC-ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc---------
Confidence 69999999999999999888 699999999999875 4578889999999999999 999998633221
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
..+.+.+.|+..+| +.....-..++|-||||.++|||||+++++||+|||.|+++|+++-..|.+.||
T Consensus 1241 -sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR 1319 (1381)
T KOG0054|consen 1241 -SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 1319 (1381)
T ss_pred -CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHH
Confidence 12344445555444 333334457899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+.-+ ++|||.+.|... .+.. ||||+||++ |++++.++|.++++.
T Consensus 1320 ~~F~-dcTVltIAHRl~-TVmd-~DrVlVld~-G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1320 EEFK-DCTVLTIAHRLN-TVMD-SDRVLVLDA-GRVVEFDSPAELLSD 1363 (1381)
T ss_pred HHhc-CCeEEEEeeccc-hhhh-cCeEEEeeC-CeEeecCChHHHHhC
Confidence 8643 689999999986 4544 899999998 999999999998864
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4e-31 Score=227.90 Aligned_cols=181 Identities=25% Similarity=0.392 Sum_probs=153.9
Q ss_pred CCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecC---CCCCCCCCHHHHHHHHHHccCC-c-
Q psy4235 2 SPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQ---DFLIEELTVLEHLQFMAKLTMD-R- 72 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~---~~~~~~ltv~e~l~~~~~~~~~-~- 72 (197)
|-=|||+|-|+++|.|..+ +.+|+|.++|+++... ..+.-++|||.+ ..++..++|.+|+.+....... .
T Consensus 292 GLvGaGRTEl~~~lfG~~~-~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~ 370 (500)
T COG1129 292 GLVGAGRTELARALFGARP-ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG 370 (500)
T ss_pred ccccCCHHHHHHHHhCCCc-CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc
Confidence 5679999999999999766 6899999999998543 234568999987 4689999999999887221111 1
Q ss_pred cccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 73 RTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
........+.++++.+.+++. ...+.++.+||||.||||.|||.|..+|++|||||||.|+|.-++.+|+++|++++++
T Consensus 371 ~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~ 450 (500)
T COG1129 371 LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450 (500)
T ss_pred ccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC
Confidence 233445567788999999996 4467899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEe
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYH 185 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~ 185 (197)
|.+||++|.++. ++...||||++|++ |+++..
T Consensus 451 G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 451 GKAILMISSELP-ELLGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred CCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEE
Confidence 999999999975 79999999999997 888754
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=5.9e-33 Score=219.36 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=122.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-----cccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-----RRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~ 75 (197)
+||||||||||+++|.- ++|.+... ...+.+++++|+..+++.+|+.+++.++...... ....
T Consensus 31 vGpNGaGKSTll~~i~~-----------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 98 (212)
T cd03274 31 VGPNGSGKSNVIDSMLF-----------VFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGID 98 (212)
T ss_pred ECCCCCCHHHHHHHHHH-----------HhccCHHH-hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcC
Confidence 69999999999999972 12332211 1124578999998888888988877665432100 0000
Q ss_pred HHHHHH--HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 76 WLELNK--TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 76 ~~~~~~--~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
...... ...++++.+++.+..++++..||+|||||++||+|++. +|++++|||||+|||+.++..+.+.+++++
T Consensus 99 ~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 99 LDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred CCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 000000 12456677888888888999999999999999999974 579999999999999999999999999985
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
++.++|++||++ ++..+||++++|..
T Consensus 179 -~~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 179 -KNAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred -CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 467888889984 57899999999975
No 379
>KOG0065|consensus
Probab=99.96 E-value=1.6e-29 Score=234.16 Aligned_cols=195 Identities=35% Similarity=0.548 Sum_probs=168.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc----c
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR----T 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~----~ 74 (197)
+||.||||||||++++|.... ...|+|.+||.+.+....++.++|.+|++..+|.|||+|.+.|.++...... .
T Consensus 147 LG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~ 226 (1391)
T KOG0065|consen 147 LGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEV 226 (1391)
T ss_pred ecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccccc
Confidence 599999999999999997652 1357999999998765446778999999999999999999999987654311 1
Q ss_pred cHHH-HHHHHHHHHHHcCCcccccccC-----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 75 TWLE-LNKTITRVMENLGINHRRQVQI-----SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 75 ~~~~-~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
.+.+ .....+.+++.+||+..++..+ +..|||||+||++|-+++.+|+++++||+|.|||..+.-++.+.|+++
T Consensus 227 ~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~ 306 (1391)
T KOG0065|consen 227 SRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQL 306 (1391)
T ss_pred cHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHH
Confidence 1111 1125678999999998887765 679999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhhhh
Q psy4235 149 ACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFA 196 (197)
Q Consensus 149 ~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~~~ 196 (197)
++. +.|.+++.+++..++.+.+|.|++|.+ |.+++.|+.++++++|.
T Consensus 307 a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 307 AHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRDEVLPYFE 354 (1391)
T ss_pred HhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHHHHHHHHH
Confidence 865 789999999999999999999999998 99999999999999885
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=5.2e-28 Score=232.52 Aligned_cols=139 Identities=25% Similarity=0.324 Sum_probs=114.7
Q ss_pred CCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHh---hCCCEEEEe
Q psy4235 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLL---TEPQILFCD 127 (197)
Q Consensus 52 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~---~~p~llllD 127 (197)
.|..+||.|++.+................+++ ++++.+||.+. +++++.+|||||+||++||++|+ .+|++||||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 56678999999886542211111123344556 58899999886 79999999999999999999998 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
|||+|||+.+++.++++|++++++|.|||+++|++. .+ ..||++++|. ++|++++.|+++++..
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999888999999999974 55 8999999995 2488999999998764
No 381
>KOG0927|consensus
Probab=99.95 E-value=7.8e-29 Score=212.33 Aligned_cols=172 Identities=21% Similarity=0.308 Sum_probs=137.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecC--CCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ--DFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
|||||||||||||+++|.+. |+.|.|.-.-. -.+++.-|+ ..+.-..++.|++.-.. .. ..
T Consensus 422 VGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H--------~~~~~y~Qh~~e~ldl~~s~le~~~~~~---~~-----~~ 484 (614)
T KOG0927|consen 422 VGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSH--------NKLPRYNQHLAEQLDLDKSSLEFMMPKF---PD-----EK 484 (614)
T ss_pred ecCCCCchhhhHHHHhhccc-ccccccccccc--------ccchhhhhhhHhhcCcchhHHHHHHHhc---cc-----cc
Confidence 69999999999999999999 79998863321 224555665 33444567777665321 11 12
Q ss_pred HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 79 LNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
..+.+..++.++||. +....++++||.|||.||.+|+.++..|.+|+|||||++||..+...+.+.|.++ ..++|+
T Consensus 485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~ 561 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVL 561 (614)
T ss_pred hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceee
Confidence 356788999999998 5678899999999999999999999999999999999999999999999999876 357889
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|||.. .+.++++++++..+++.....|+......
T Consensus 562 vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 562 VSHDFR-LISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred eechhh-HHHHHHHHhHhhccCceeecCccHHHHHH
Confidence 999975 89999999999998666677787755433
No 382
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1.4e-28 Score=198.58 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=115.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee--CCcc------cccceEEEEe--cCCCC-CCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP--ISRT------VMSRISGYVA--QQDFL-IEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~--~~~~------~~~~~~~~v~--q~~~~-~~~ltv~e~l~~~~~~~ 69 (197)
+||||||||||+.+|++.+. +..|+++..+.. +... .....+...+ |++.. ....++.+... ...
T Consensus 28 ~G~NGsGKStll~ai~~~l~-~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~---~~~ 103 (247)
T cd03275 28 IGPNGSGKSNLMDAISFVLG-EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS---SYR 103 (247)
T ss_pred ECCCCCCHHHHHHHHHHHhC-CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce---EEE
Confidence 59999999999999999886 466777654321 1100 0112233333 33221 11111111100 000
Q ss_pred CCccccHHHHHHHHHHHHHHcCCccc----------------------ccccCCCCCHHHHHHHHHHHHHhhC----CCE
Q psy4235 70 MDRRTTWLELNKTITRVMENLGINHR----------------------RQVQISGLSGGQRKRLALAVQLLTE----PQI 123 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~~~LSgGq~qrv~ia~al~~~----p~l 123 (197)
.... ....+.+.++++.+++... .++++.+||+|||||++||++++.+ |++
T Consensus 104 ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ 180 (247)
T cd03275 104 INGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPF 180 (247)
T ss_pred ECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCE
Confidence 0011 0123456688888887421 2344589999999999999999875 899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCc
Q psy4235 124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180 (197)
Q Consensus 124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg 180 (197)
+||||||++||+..+..+.+.|++++++|.++|++||+. .+...||++++|...+
T Consensus 181 lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 181 FVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred EEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 999999999999999999999999987789999999994 4578999999998644
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=5.6e-28 Score=189.08 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC----CcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI----SRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~----~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+.+|.-... .... ...-|... ........+.+.+|+..++++ ...
T Consensus 27 ~G~NGsGKStll~ai~~~l~-~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--------------~~~---- 86 (198)
T cd03276 27 VGNNGSGKSAILTALTIGLG-GKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--------------PLC---- 86 (198)
T ss_pred ECCCCCcHHHHHHHHHHHhc-CCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC--------------cCC----
Confidence 59999999999999974322 1111 01112211 111113457888887766551 000
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE- 151 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~- 151 (197)
...+..+.++++. ....++++.+||+|||||++||+|+ +.+|+++||||||++||+..+..+.++|+++..+
T Consensus 87 ~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~ 163 (198)
T cd03276 87 VLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQ 163 (198)
T ss_pred HHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 0113456677776 6677889999999999999999999 5899999999999999999999999999998643
Q ss_pred -C-CEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 152 -S-RIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 152 -~-~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+ .+||+++|++. .+.. +|+|.++..
T Consensus 164 ~~~~~iii~th~~~-~i~~-~d~v~~~~~ 190 (198)
T cd03276 164 PGRQFIFITPQDIS-GLAS-SDDVKVFRM 190 (198)
T ss_pred CCcEEEEEECCccc-cccc-ccceeEEEe
Confidence 3 58899999975 5655 499999876
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=1.4e-26 Score=214.33 Aligned_cols=127 Identities=25% Similarity=0.370 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCC
Q psy4235 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPTT 131 (197)
Q Consensus 56 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPts 131 (197)
|||.|++.|+..... .....+.++.+||.. .+++++.+|||||+||+.||++|+.+| +++||||||+
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPts 862 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT 862 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence 788888888754321 123457899999986 578999999999999999999999999 9999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 132 GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 132 ~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
|||+..+..+.+.|++++++|.|||+++|++. .+ ..||+++.|. ++|++++.|+++++..
T Consensus 863 GLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 863 GLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999878999999999974 44 6799999993 3599999999998864
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=2.2e-27 Score=200.29 Aligned_cols=157 Identities=21% Similarity=0.237 Sum_probs=131.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||-||||+.++|+|.++ |++|+ .. .-.++|=||.-.--...||.+.+.-....... ..
T Consensus 373 lGpNgiGKTTFvk~LAG~ik-Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-------~s 433 (591)
T COG1245 373 LGPNGIGKTTFVKLLAGVIK-PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG-------SS 433 (591)
T ss_pred ECCCCcchHHHHHHHhcccc-CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhhhhcc-------cc
Confidence 59999999999999999999 79887 11 13478888875444556999987654332111 11
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~t 159 (197)
..-.++++-++|++..++++.+|||||.|||+||.||..++++++||||++-||.+.+..+.+.|+++..+ ++|.+++-
T Consensus 434 ~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVd 513 (591)
T COG1245 434 YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513 (591)
T ss_pred hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 23457888899999999999999999999999999999999999999999999999999999999999864 78999999
Q ss_pred cCCcchHHhhcCeEEEEe
Q psy4235 160 HQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~ 177 (197)
||.. .+--++||++++.
T Consensus 514 HDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 514 HDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred ccee-hhhhhhceEEEEe
Confidence 9975 7888899999985
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.2e-28 Score=200.68 Aligned_cols=165 Identities=27% Similarity=0.336 Sum_probs=134.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+|.||||||||++.++|+++ |++|+|++||++++.. ++|+.++-||-|-.+|+.+-..|+ .
T Consensus 355 iG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~---------------~ 418 (546)
T COG4615 355 IGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG---------------K 418 (546)
T ss_pred ECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc---------------C
Confidence 69999999999999999999 7999999999999764 355667777777777665211111 1
Q ss_pred HHHHHHHHHHHHcCCcccc---cc--cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhC
Q psy4235 78 ELNKTITRVMENLGINHRR---QV--QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ-LACE 151 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~---~~--~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~ 151 (197)
...+.++.+++++.+.+.. +. .+-.||.|||+|+++..||+-+.+|+++||=.+--||.-++.+++.+-- ++++
T Consensus 419 as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q 498 (546)
T COG4615 419 ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ 498 (546)
T ss_pred CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh
Confidence 1246788899998886543 22 2457999999999999999999999999999999999999999887765 5667
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY 184 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~ 184 (197)
|+|||.+|||.. .+..+||++.+.+ |++++
T Consensus 499 GKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e 528 (546)
T COG4615 499 GKTIFAISHDDH--YFIHADRLLEMRN-GQLSE 528 (546)
T ss_pred CCeEEEEecCch--hhhhHHHHHHHhc-Cceee
Confidence 999999999964 5889999999987 77765
No 387
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=3e-26 Score=201.28 Aligned_cols=158 Identities=28% Similarity=0.358 Sum_probs=127.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
.||||||||||+|+|+|+-+ .-+|+|.+= ....+-|+||.|.+... |.+|-+.++..... . ..
T Consensus 425 ~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~---~----~d 487 (604)
T COG4178 425 TGESGAGKTSLLRALAGLWP-WGSGRISMP--------ADSALLFLPQRPYLPQG-TLREALCYPNAAPD---F----SD 487 (604)
T ss_pred ECCCCCCHHHHHHHHhccCc-cCCCceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCCCCC---C----Ch
Confidence 49999999999999999987 567887542 12346899999998888 99999987643221 1 23
Q ss_pred HHHHHHHHHcCCccccccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 81 KTITRVMENLGINHRRQVQ------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
+.+.++|..+||.+..++. -..||+|||||+++||.|+++|++++|||.|++||+.+...+++++++-. .+.|
T Consensus 488 ~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~t 566 (604)
T COG4178 488 AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDAT 566 (604)
T ss_pred HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCE
Confidence 5677899999987654432 25699999999999999999999999999999999999999999998743 3689
Q ss_pred EEEEecCCcchHHhhcCeEEEEeC
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+|.+.|.. .+..+.++.+-+.+
T Consensus 567 vISV~Hr~--tl~~~h~~~l~l~~ 588 (604)
T COG4178 567 VISVGHRP--TLWNFHSRQLELLD 588 (604)
T ss_pred EEEeccch--hhHHHHhhheeecc
Confidence 99999986 46788787766654
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.4e-25 Score=205.76 Aligned_cols=126 Identities=24% Similarity=0.369 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCC
Q psy4235 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLT---EPQILFCDEPT 130 (197)
Q Consensus 55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~---~p~llllDEPt 130 (197)
.|||.|.+.|+..... .....++++.+||.. .+++++.+|||||+||+.||++|+. +|+++||||||
T Consensus 789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPt 859 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPT 859 (924)
T ss_pred CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 3566666666543221 113457888999986 4789999999999999999999997 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHH
Q psy4235 131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKV 191 (197)
Q Consensus 131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~ 191 (197)
+|||+..+..+.+.|+++.++|.|+|+++|++. .+ ..||++++|. ++|++++.|+++++
T Consensus 860 sgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 860 TGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999888999999999974 44 6799999993 35999999998875
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=191.03 Aligned_cols=186 Identities=22% Similarity=0.301 Sum_probs=157.6
Q ss_pred CCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC-Cc---ccc-cceEEEEecCC---CCCCCCCHHHHHHHHHHcc----
Q psy4235 2 SPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI-SR---TVM-SRISGYVAQQD---FLIEELTVLEHLQFMAKLT---- 69 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~-~~---~~~-~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~---- 69 (197)
|-.|-|-+.|+.+|+|+.+ +.+|+|.++|+++ .. ..+ +..++|||++. .+.+.+|+.||+.+.....
T Consensus 291 GV~GNGQ~eL~eaisGlr~-~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~ 369 (501)
T COG3845 291 GVAGNGQSELVEAISGLRK-PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS 369 (501)
T ss_pred ecCCCCHHHHHHHHhCCCc-cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccc
Confidence 6789999999999999987 5679999999997 22 222 34589999984 5889999999998764321
Q ss_pred CCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 70 MDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
......+....+.+.++++.+++. .-...++..||||.+||+-+||-|..+|++||+.+||.|||..+.+.|.+.|.+.
T Consensus 370 ~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~ 449 (501)
T COG3845 370 RGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449 (501)
T ss_pred cccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence 111244567778889999999997 4466789999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
++.|+.|+++|.+.+ +++.+||||.+|.+ |+++...++++
T Consensus 450 r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 450 RDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred HhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 999999999999985 79999999999987 99887666654
No 390
>KOG0062|consensus
Probab=99.93 E-value=1.6e-25 Score=191.11 Aligned_cols=169 Identities=25% Similarity=0.338 Sum_probs=134.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|+||+||||++|++.|-.. |.+|.+.+.+ +.+++|.+|...-+..+.|.+. .+....+.. . .+
T Consensus 396 vg~ng~gkst~lKi~~~~l~-~~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~pG--~----~~ 459 (582)
T KOG0062|consen 396 VGENGDGKSTLLKILKGDLT-PTRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFPG--K----TE 459 (582)
T ss_pred eccCchhHHHHHHHHhccCC-cccceeeecc--------cceecchhHhhhhHHHHHhHHH-HHHHHhCCC--C----CH
Confidence 59999999999999999888 6888876543 4678999998654444444332 222223221 1 34
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
+.+..-+..|||+ +.+.+.+..||||||-||++|.+...+|-+|+|||||+.||..+...+.+.|+.+ .+.||++|
T Consensus 460 ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VS 536 (582)
T KOG0062|consen 460 EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVS 536 (582)
T ss_pred HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEE
Confidence 6788899999997 5667778999999999999999999999999999999999999999999999887 35788899
Q ss_pred cCCcchHHhhcCeEEEEeCCcEE-EEecChhH
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSK 190 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~ 190 (197)
|+. +++...|+.+|+.++ |++ -.+|...+
T Consensus 537 Hd~-~fi~~~c~E~Wvve~-g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 537 HDE-EFISSLCKELWVVED-GKVTPIEGGIDK 566 (582)
T ss_pred CcH-HHHhhcCceeEEEcC-CcEEeeeccHHH
Confidence 996 689999999999998 555 45565543
No 391
>KOG0066|consensus
Probab=99.93 E-value=2.3e-25 Score=187.79 Aligned_cols=167 Identities=28% Similarity=0.378 Sum_probs=132.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC--CCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||.||||||++|.|-+. |..|+.+-| .+-+||+.-|+. .+-..-|..|++.-.+.+.
T Consensus 619 VGPNGVGKSTlLkLL~Gkl~-P~~GE~RKn--------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlp--------- 680 (807)
T KOG0066|consen 619 VGPNGVGKSTLLKLLIGKLD-PNDGELRKN--------HRLRIGWFDQHANEALNGEETPVEYLQRKFNLP--------- 680 (807)
T ss_pred ECCCCccHHHHHHHHhcCCC-CCcchhhcc--------ceeeeechhhhhHHhhccccCHHHHHHHhcCCC---------
Confidence 69999999999999999998 688877532 233589998874 4555567878776543321
Q ss_pred HHHHHHHHHHHcCCcccccc-cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQV-QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
.+.+...|-.+||...+++ .+..|||||+-||++|-.-+..|++|||||||++||.++...+.+.|+++ ...||+
T Consensus 681 -yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~ 756 (807)
T KOG0066|consen 681 -YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIM 756 (807)
T ss_pred -hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEE
Confidence 2457788999999866654 78999999999999999999999999999999999999999999999887 357889
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
+|||.. .+.+.-+..+|+.+.|.-...|+.++
T Consensus 757 VsHDeR-Li~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 757 VSHDER-LIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred Eecccc-eeeecCceEEEEccCChhhccccHHH
Confidence 999965 56666667888887665455666654
No 392
>KOG0927|consensus
Probab=99.92 E-value=1.3e-25 Score=192.57 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCC-cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 79 LNKTITRVMENLGI-NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 79 ~~~~~~~~l~~~~l-~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
...++.+++..+|. .+..++.+.+||||+|.|++|||+|..+|++|+|||||++||+.+...+-+.|.++.. . ++++
T Consensus 197 ~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi 274 (614)
T KOG0927|consen 197 FEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVI 274 (614)
T ss_pred HHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEE
Confidence 34556667777764 5778999999999999999999999999999999999999999999999999987632 2 7888
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++|.. +.+-..|..|+-+.++.-+.|.|+.++..
T Consensus 275 ~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 275 VSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred Eecch-hhhhhHhhhhheecccceeeecCCHHHHh
Confidence 88886 58999999999998844478889888654
No 393
>KOG0062|consensus
Probab=99.92 E-value=2e-25 Score=190.52 Aligned_cols=171 Identities=26% Similarity=0.338 Sum_probs=119.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecC-CCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+|+||+|||||||+|+. |.|... ++.. ..+ --+++-. ..+...+++.+.+.--..+.. ....
T Consensus 112 vGrNG~GKsTLLRaia~-------~~v~~f--~veq-E~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~~-----~~~l 174 (582)
T KOG0062|consen 112 VGRNGIGKSTLLRAIAN-------GQVSGF--HVEQ-EVR--GDDTEALQSVLESDTERLDFLAEEKELLA-----GLTL 174 (582)
T ss_pred eCCCCCcHHHHHHHHHh-------cCcCcc--Cchh-hee--ccchHHHhhhhhccHHHHHHHHhhhhhhc-----cchH
Confidence 69999999999999974 333222 2211 111 1233322 223333333333322111100 0012
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.+.+.++|..+|.. +...++.++||||-|.|++|||||..+|+||||||||+.||..+..++.+.|..+ ..|+|+|
T Consensus 175 ~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liV 251 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIV 251 (582)
T ss_pred HHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEE
Confidence 23344489999987 5677889999999999999999999999999999999999999999999999886 3799999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEE-EEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~~~ 193 (197)
|||- .++-..|..|+.+++ -++ .|.|+.+++.+
T Consensus 252 SHDr-~FLn~V~tdIIH~~~-~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 252 SHDR-NFLNTVCTDIIHLEN-LKLDYYKGNYSQFVK 285 (582)
T ss_pred eccH-HHHHHHHHHHHHHhh-hhhhhhcCcHHHHHH
Confidence 9996 588999999988876 444 57788776644
No 394
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=2.5e-25 Score=172.13 Aligned_cols=187 Identities=17% Similarity=0.250 Sum_probs=141.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeE-----EEECCeeC---Cccccc----ceEEEEecCCC--CCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGE-----ILLNGCPI---SRTVMS----RISGYVAQQDF--LIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~-----i~~~g~~~---~~~~~~----~~~~~v~q~~~--~~~~ltv~e~l~~~~ 66 (197)
+|.||||||-..|+|+|..+ ++.. .+|++.++ ++...+ +.++++||+|. +.|.-+|...+.-..
T Consensus 39 VGESGSGKSLiAK~Ic~v~k--dnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I 116 (330)
T COG4170 39 VGESGSGKSLIAKAICGVNK--DNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI 116 (330)
T ss_pred eccCCCchhHHHHHHhcccc--cceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhC
Confidence 69999999999999999876 3444 45666554 222222 34789999976 445444433332211
Q ss_pred H--ccCC---ccccHHHHHHHHHHHHHHcCCccc---ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235 67 K--LTMD---RRTTWLELNKTITRVMENLGINHR---RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA 138 (197)
Q Consensus 67 ~--~~~~---~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~ 138 (197)
. .+.. ..+.+ .+.++-++|.++|+.+. ...+|.+|.-||.|+|.||.|++.+|++||.||||+++++.++
T Consensus 117 P~wTfkgrWWq~F~W--rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq 194 (330)
T COG4170 117 PAWTYKGRWWQRFGW--RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ 194 (330)
T ss_pred ccccccchHhhhhch--hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHH
Confidence 1 1110 11222 24567789999999754 5679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 139 NNVVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 139 ~~i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.+|+++|..+.. ++.+|++++||.. .+.+-||++-||.. |.-++.++.+++++
T Consensus 195 ~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~e~l~~ 248 (330)
T COG4170 195 AQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPSEELVT 248 (330)
T ss_pred HHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccchhHHhc
Confidence 999999999985 4789999999975 78999999999998 76667777777654
No 395
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.4e-24 Score=170.28 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=70.0
Q ss_pred cccccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCCcchHHh
Q psy4235 95 RRQVQISGLSGGQRKRLALAVQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S-RIVICAIHQPTSGVFE 168 (197)
Q Consensus 95 ~~~~~~~~LSgGq~qrv~ia~al----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~-~~iii~th~~~~~~~~ 168 (197)
..+..+.+||+||||++.+++++ +.+|+++|+||||++||+..+..+.+.+++++++ + .++|++|||.. ....
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~ 197 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLN 197 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCc
Confidence 45667899999999998877654 5899999999999999999999999999999766 5 47999999975 4567
Q ss_pred hcC--eEEEEeC
Q psy4235 169 KFD--TVSLLAH 178 (197)
Q Consensus 169 ~~d--~v~~l~~ 178 (197)
.|| +++++.+
T Consensus 198 ~~~~~~v~~l~~ 209 (213)
T cd03277 198 YHEKMTVLCVYN 209 (213)
T ss_pred ccCceEEEEEec
Confidence 776 6777776
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=2.2e-24 Score=182.22 Aligned_cols=160 Identities=27% Similarity=0.341 Sum_probs=119.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--------c----cc------ceEEEEecC----CCCCCCCCH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--------V----MS------RISGYVAQQ----DFLIEELTV 58 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--------~----~~------~~~~~v~q~----~~~~~~ltv 58 (197)
+||||-||||-+|+|+|.+. |.=|+- ++.+-... . ++ -++..=+|- |..+-. +|
T Consensus 106 lG~NGiGKsTalkILaGel~-PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG-~v 181 (591)
T COG1245 106 LGPNGIGKSTALKILAGELK-PNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKG-KV 181 (591)
T ss_pred EcCCCccHHHHHHHHhCccc-cCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcc-hH
Confidence 69999999999999999998 565542 22111000 0 00 011222221 222222 44
Q ss_pred HHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA 138 (197)
Q Consensus 59 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~ 138 (197)
.|-|.-. ...-..+++++.++|.+.+++.+++|||||.||++||.+++++++++++|||+|-||...+
T Consensus 182 ~elLk~~------------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qR 249 (591)
T COG1245 182 GELLKKV------------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQR 249 (591)
T ss_pred HHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHH
Confidence 4433211 1123577899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235 139 NNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 139 ~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~ 177 (197)
-...+.++++++.+++||++.||+. .+--++|-|.++.
T Consensus 250 l~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~Y 287 (591)
T COG1245 250 LNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEe
Confidence 9999999999988999999999974 6667788888775
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.90 E-value=3.7e-23 Score=159.27 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 103 LSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 103 LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
||+||+||++||++++ .+|+++++|||+++||+..+..+.+.|+++++++.++|++||++. ....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998777789999999963 4578999999876
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.90 E-value=4.7e-24 Score=167.11 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=74.9
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235 95 RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAIHQPTSGVFEKFDTV 173 (197)
Q Consensus 95 ~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~iii~th~~~~~~~~~~d~v 173 (197)
..+...+.+|+||+|++.+++++ .+|+++++|||++++|+..+..+. ..++.+++.+.++|++||+. .+..+||++
T Consensus 84 ~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~ 160 (200)
T cd03280 84 SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKR 160 (200)
T ss_pred hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcC
Confidence 34455678999999999999884 899999999999999999999996 57888877788999999973 578999999
Q ss_pred EEEeCCcEEEEe
Q psy4235 174 SLLAHGGLLAYH 185 (197)
Q Consensus 174 ~~l~~gg~i~~~ 185 (197)
+.+++ |.+.++
T Consensus 161 ~~l~~-g~l~~~ 171 (200)
T cd03280 161 EGVEN-ASMEFD 171 (200)
T ss_pred CCeEE-EEEEEe
Confidence 99987 888765
No 399
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=9e-23 Score=189.11 Aligned_cols=137 Identities=22% Similarity=0.381 Sum_probs=111.6
Q ss_pred CCCCCHHHHHHHHHHccCCcc------ccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy4235 53 IEELTVLEHLQFMAKLTMDRR------TTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QI 123 (197)
Q Consensus 53 ~~~ltv~e~l~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~l 123 (197)
+..+||.|.+.|......... ....+..+++. +++.+||.+. +++++.+|||||+|||.||++|+.+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 456899999998654422110 00112334443 6888899876 79999999999999999999999997 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eCCcEEEEecChhHHHh
Q psy4235 124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~~ 193 (197)
+||||||+|||+..+.++.++|++++++|.|||+++|++. .+ ..||++++| .+ |++++.|+++++..
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~-G~iv~~g~~~e~~~ 585 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHG-GEVVASGTPEEIMK 585 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCC-CEEeeccCHHHHhc
Confidence 9999999999999999999999999888999999999975 44 569999999 65 89999999988743
No 400
>KOG0060|consensus
Probab=99.89 E-value=1.3e-22 Score=175.46 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=129.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
.||||||||+|||+++|+.+ ..+|++..-...- .+.+-|+||.|.+.-+ |.+|.+.|+........ .....
T Consensus 467 tG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~-----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~--~~~~d 537 (659)
T KOG0060|consen 467 TGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGG-----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDS--KSASD 537 (659)
T ss_pred ECCCCCchhHHHHHHhcccc-cCCCeEEecccCC-----CCceEEecCCCCcccc-chhheeeccCccccccc--cCCCH
Confidence 49999999999999999876 6899986532221 1347899999998777 99999988733211111 11123
Q ss_pred HHHHHHHHHcCCccccccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 81 KTITRVMENLGINHRRQVQ-----------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
+.+.++|+.++|.+...+- ...||+||+||++.||.+.++|++-||||-||++|......+++.+++.
T Consensus 538 ~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~- 616 (659)
T KOG0060|consen 538 EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM- 616 (659)
T ss_pred HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-
Confidence 4566677776665433321 2569999999999999999999999999999999999999999888775
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLA 183 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~ 183 (197)
|.|.|-++|.. .+.++-|.++-|..+|...
T Consensus 617 --giT~iSVgHRk--SL~kfHd~~L~~~g~g~w~ 646 (659)
T KOG0060|consen 617 --GITFISVGHRK--SLWKFHDYVLRMDGRGSWR 646 (659)
T ss_pred --CCeEEEeccHH--HHHhhhhEEEEecCCCceE
Confidence 88999999986 4788899999998766543
No 401
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.7e-22 Score=185.67 Aligned_cols=136 Identities=24% Similarity=0.360 Sum_probs=108.2
Q ss_pred CCCCCHHHHHHHHHHccCCcccc--H----HHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy4235 53 IEELTVLEHLQFMAKLTMDRRTT--W----LELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QI 123 (197)
Q Consensus 53 ~~~ltv~e~l~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~l 123 (197)
+..|||.|.+.|+..+....... . .+...++ +.+..+||... +++++.+|||||+||+.||++|+.+| ++
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 34688999888876542111000 0 0111122 34677888765 79999999999999999999999986 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eCCcEEEEecChhHHH
Q psy4235 124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AHGGLLAYHGQVSKVL 192 (197)
Q Consensus 124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~ 192 (197)
|||||||+|||+..+..+.++|++++++|.|||+++|++. .+ ..||++++| ++ |++++.|+++++.
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~-G~Iv~~g~~~el~ 582 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHG-GEVVASGTPEEIL 582 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCC-CEEeeccCHHHHh
Confidence 9999999999999999999999999888999999999974 44 589999999 65 9999999998874
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.88 E-value=2e-22 Score=152.96 Aligned_cols=74 Identities=26% Similarity=0.339 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 103 LSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 103 LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
||+||+||+++|++|.. +|+++|+|||++|+|+.....+.+.+.++..++.++|++||++. ....+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 99999999999999987 78999999999999999999999999988665789999999963 4677999999864
No 403
>KOG2355|consensus
Probab=99.88 E-value=3.6e-22 Score=153.91 Aligned_cols=174 Identities=22% Similarity=0.296 Sum_probs=127.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-c-------------cccceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-T-------------VMSRISGYVAQQDFLIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~-------------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~ 66 (197)
+|.||||||||||+|+|-.- .-.|.|.++|.+.-. . .|.+.+++.. +-.+...+++.+.| |+.
T Consensus 46 VGaNGaGKtTlLKiLsGKhm-v~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV 122 (291)
T KOG2355|consen 46 VGANGAGKTTLLKILSGKHM-VGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGV 122 (291)
T ss_pred EecCCCchhhhHHHhcCccc-ccCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhc
Confidence 69999999999999999654 345899999977421 0 1222222222 22233355665433 332
Q ss_pred HccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 67 KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.. .. .++-+++++.+.++ ...+...+|-|||+||.|++.|++.-++|+|||-|--||...+..+++.++
T Consensus 123 ~g-----~d----p~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlk 191 (291)
T KOG2355|consen 123 GG-----DD----PERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLK 191 (291)
T ss_pred cC-----CC----hhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHH
Confidence 11 11 13445666766664 345677899999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 147 QLACE-SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 147 ~l~~~-~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
+-+++ |.||+..||..+ -+..-...++.+.. |+++..-+.+.
T Consensus 192 eEce~RgatIVYATHIFD-GLe~Wpthl~yi~~-Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 192 EECEQRGATIVYATHIFD-GLETWPTHLVYIKS-GKLVDNLKYQK 234 (291)
T ss_pred HHHhhcCcEEEEEeeecc-chhhcchhEEEecC-Ceeeeccccch
Confidence 98865 899999999975 68888999999987 88876433333
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.7e-22 Score=161.46 Aligned_cols=76 Identities=33% Similarity=0.395 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235 101 SGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l 176 (197)
..||+||+||+++|++++. +|+++|+|||+++||+..+..+.+.|+++.+ +.++|++||++. +...||+++++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3499999999999997654 9999999999999999999999999999864 689999999963 56899999999
Q ss_pred eCC
Q psy4235 177 AHG 179 (197)
Q Consensus 177 ~~g 179 (197)
.++
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 874
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.86 E-value=5.5e-22 Score=155.32 Aligned_cols=123 Identities=19% Similarity=0.231 Sum_probs=91.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|... +...|.++... .+++|...+|+.+|+.||+.+..... ..+ .
T Consensus 31 tGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~l~~~~s~~------~~e-~ 91 (199)
T cd03283 31 TGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSDDLRDGISYF------YAE-L 91 (199)
T ss_pred ECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchhccccccChH------HHH-H
Confidence 59999999999999988543 12345444321 36677778899999999997753211 112 2
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~iii~t 159 (197)
+++.++++.+++ .+|+++|+|||++|+|+.....+. .+++.+.+.+.++|++|
T Consensus 92 ~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivT 145 (199)
T cd03283 92 RRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIST 145 (199)
T ss_pred HHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 557778887763 799999999999999999998775 47888877788999999
Q ss_pred cCCcchHHhh
Q psy4235 160 HQPTSGVFEK 169 (197)
Q Consensus 160 h~~~~~~~~~ 169 (197)
|+.. .+...
T Consensus 146 H~~~-~~~~~ 154 (199)
T cd03283 146 HDLE-LADLL 154 (199)
T ss_pred CcHH-HHHhh
Confidence 9974 44443
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=1.4e-20 Score=181.70 Aligned_cols=136 Identities=23% Similarity=0.401 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHccCCccccHHHHHHHHH---HHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEe
Q psy4235 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTIT---RVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QILFCD 127 (197)
Q Consensus 54 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~llllD 127 (197)
..|++.|-+.|...+..... .....-..+. +.|..+||.+. +++.+.+|||||+||+.||+||+.+| ++||||
T Consensus 425 ~~m~i~~l~~~~~~l~~~~~-~~~~il~ei~~RL~~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILD 503 (1809)
T PRK00635 425 QQMSLQELFIFLSQLPSKSL-SIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILD 503 (1809)
T ss_pred hcCCHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 45778777777654421000 0111111111 24556788876 68999999999999999999999999 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHH
Q psy4235 128 EPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVL 192 (197)
Q Consensus 128 EPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~ 192 (197)
|||+|||+..++.+.++|++++++|.|||+++|+.. +.+.||++++|. .+|++++.|++++++
T Consensus 504 EPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 504 EPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 999999999999999999999888999999999964 679999999996 348999999988774
No 407
>KOG0064|consensus
Probab=99.84 E-value=1.9e-21 Score=166.78 Aligned_cols=158 Identities=16% Similarity=0.294 Sum_probs=113.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccC--CccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM--DRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~~ 78 (197)
+||||||||+|+|+|.|+.+ ...|...+ +....+-|+||.|.+--+ |.+|.+-++-.... .+..
T Consensus 514 tGPNGCGKSSLfRILggLWP-vy~g~L~~--------P~~~~mFYIPQRPYms~g-tlRDQIIYPdS~e~~~~kg~---- 579 (728)
T KOG0064|consen 514 TGPNGCGKSSLFRILGGLWP-VYNGLLSI--------PRPNNIFYIPQRPYMSGG-TLRDQIIYPDSSEQMKRKGY---- 579 (728)
T ss_pred ECCCCccHHHHHHHHhccCc-ccCCeeec--------CCCcceEeccCCCccCcC-cccceeecCCcHHHHHhcCC----
Confidence 59999999999999999876 45554432 123448999999886643 77777765421100 0011
Q ss_pred HHHHHHHHHHHcCCcccccccC---------CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 79 LNKTITRVMENLGINHRRQVQI---------SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.++....+|..+.|++.+.+-. ..||||+|||+++||.+.+.|+..+|||-||+..+.....+++..+..
T Consensus 580 ~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~- 658 (728)
T KOG0064|consen 580 TDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA- 658 (728)
T ss_pred CHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc-
Confidence 1234556666666655444433 469999999999999999999999999999999999988888877654
Q ss_pred hCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235 150 CESRIVICAIHQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~~d~v~~l~ 177 (197)
|.+.|-+||.+. +.++-..++-.+
T Consensus 659 --gi~llsithrps--lwk~h~~ll~~d 682 (728)
T KOG0064|consen 659 --GISLLSITHRPS--LWKYHTHLLEFD 682 (728)
T ss_pred --CceEEEeecCcc--HHHHHHHHHhcc
Confidence 889999999984 456655554443
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.82 E-value=2.8e-21 Score=151.62 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN-LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 100 ~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
.+.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+.. +++.+.+.+.++|++||+. ++...++++..+..
T Consensus 89 ~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~ 165 (202)
T cd03243 89 RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKN 165 (202)
T ss_pred ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEE
Confidence 4556666665 666678889999999999999999998888754 5666766688999999985 45778888888877
Q ss_pred CcEEEEecChh
Q psy4235 179 GGLLAYHGQVS 189 (197)
Q Consensus 179 gg~i~~~g~~~ 189 (197)
+.+...++..
T Consensus 166 -~~~~~~~~~~ 175 (202)
T cd03243 166 -LHMEELITTG 175 (202)
T ss_pred -EEEEEEecCC
Confidence 7777666543
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=6.5e-19 Score=144.03 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235 100 ISGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170 (197)
Q Consensus 100 ~~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~ 170 (197)
...+|+||+|+++||++|+ .+|+++++||||++||+..+..+.+.++++. .+++++|+.. .+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 4568999999999999985 7999999999999999999999999998753 3556666543 466666
Q ss_pred ---CeEEEEeCCcEE
Q psy4235 171 ---DTVSLLAHGGLL 182 (197)
Q Consensus 171 ---d~v~~l~~gg~i 182 (197)
++++.+++ |++
T Consensus 256 ~~~~~i~~l~~-g~i 269 (270)
T cd03242 256 LRRAQIFRVDA-GTL 269 (270)
T ss_pred ccCccEEEEeC-cEE
Confidence 67888876 764
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.81 E-value=2e-20 Score=148.75 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=72.4
Q ss_pred HHHHcCCcccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 86 VMENLGINHRRQVQISGLSGGQRKRLALAVQL--LTEPQILFCDEP---TTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 86 ~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al--~~~p~llllDEP---ts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
++..+++.+.. ...+|.|+++++.+++++ +.+|+++||||| |+++|+...... +++.+.+ .+.++|++|
T Consensus 76 il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisT 150 (222)
T cd03285 76 ILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFAT 150 (222)
T ss_pred eEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEe
Confidence 44455554332 578999999999999999 899999999999 899999887543 3344443 478999999
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEec
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g 186 (197)
|. .++..+||++..+.+ |++...+
T Consensus 151 H~--~el~~~~~~~~~i~~-g~~~~~~ 174 (222)
T cd03285 151 HF--HELTALADEVPNVKN-LHVTALT 174 (222)
T ss_pred ch--HHHHHHhhcCCCeEE-EEEEEEE
Confidence 96 367899999998887 7776544
No 411
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=4.4e-19 Score=148.95 Aligned_cols=160 Identities=29% Similarity=0.348 Sum_probs=122.9
Q ss_pred CCCCCCcHHHHHHHHhcCcC-------CCceeEEEECCeeCCcccccceEEEEecC-CCCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-------GLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-------~~~~G~i~~~g~~~~~~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+|+|||||||||++|+|... .|++|.|.+--.. ..+.+|-. ..-|..-|+.|.+.-- .
T Consensus 415 vGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~--t---- 480 (593)
T COG2401 415 VGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK--T---- 480 (593)
T ss_pred EecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc--c----
Confidence 59999999999999998642 1688888653211 22455543 2224455777765421 1
Q ss_pred cccHHHHHHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 73 RTTWLELNKTITRVMENLGINH--RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
. +...+-++|++.|+.+ ...+++++||-|||.|+.||+++...|.+++.||-.|.||+.+...+.+-|.+++.
T Consensus 481 G-----D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR 555 (593)
T COG2401 481 G-----DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555 (593)
T ss_pred C-----chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 1 1234668999999974 34678899999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCCcchHHhh-cCeEEEEeCCc
Q psy4235 151 E-SRIVICAIHQPTSGVFEK-FDTVSLLAHGG 180 (197)
Q Consensus 151 ~-~~~iii~th~~~~~~~~~-~d~v~~l~~gg 180 (197)
+ |.|++++||+++ ....+ -|.++.+..|+
T Consensus 556 e~giTlivvThrpE-v~~AL~PD~li~vgYg~ 586 (593)
T COG2401 556 EAGITLIVVTHRPE-VGNALRPDTLILVGYGK 586 (593)
T ss_pred HhCCeEEEEecCHH-HHhccCCceeEEeeccc
Confidence 5 899999999974 66666 78888887733
No 412
>KOG0063|consensus
Probab=99.79 E-value=3.7e-19 Score=149.76 Aligned_cols=158 Identities=26% Similarity=0.284 Sum_probs=124.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+|.||.|||||+++++|.++ |+.| +|-. -.++|=||...-=..-||++.+.--.+.. -..
T Consensus 373 lgEngtgkTTfi~mlag~~~-pd~~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kIr~a-------y~~ 433 (592)
T KOG0063|consen 373 LGENGTGKTTFIRMLAGRLK-PDEGGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKIRDA-------YMH 433 (592)
T ss_pred EccCCcchhHHHHHHhcCCC-CCccCcccc-----------cceeccccccCccccchHHHHHHHHhHhh-------hcC
Confidence 69999999999999999988 5654 3311 23677777644333348887665322211 122
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~iii~ 158 (197)
.+-+.++++-+.+++..++.+.+||||++||+++|.+|-..+++++.|||.+-||.+.+...-..++++- +..+|-.++
T Consensus 434 pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV 513 (592)
T KOG0063|consen 434 PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV 513 (592)
T ss_pred HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence 3567888999999999999999999999999999999999999999999999999999988888888864 447899999
Q ss_pred ecCCcchHHhhcCeEEEEeC
Q psy4235 159 IHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~ 178 (197)
.||.. .+.-.+||+++...
T Consensus 514 EhdfI-maTYladrvivf~G 532 (592)
T KOG0063|consen 514 EHDFI-MATYLADRVIVFEG 532 (592)
T ss_pred hhHHH-HHHhhcceeEEEec
Confidence 99964 56678999998863
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.78 E-value=4.5e-19 Score=144.53 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=93.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|.++ +++|+|.++|+++.. ......+++++|.. +.+.++|.+|..-
T Consensus 117 ~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------------ 182 (270)
T TIGR02858 117 ISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------------ 182 (270)
T ss_pred EcCCCCCHHHHHHHHhCccC-CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------------
Confidence 59999999999999999998 799999999999852 22334567888854 4455666554110
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
.. |+ ..+ +...+|+++++|||++ .+.+..+++.+. .|.++|
T Consensus 183 ------~~---------------------~~---~~~--i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI 223 (270)
T TIGR02858 183 ------AE---------------------GM---MML--IRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSII 223 (270)
T ss_pred ------HH---------------------HH---HHH--HHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEE
Confidence 00 11 222 3336999999999974 344555555554 689999
Q ss_pred EEecCCcch-H-----------HhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 157 CAIHQPTSG-V-----------FEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 157 i~th~~~~~-~-----------~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
+++|+.... + ..++||+++|++ ++ ..|++++++
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~-~~--~~g~~~~i~ 268 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR-RK--GPGTVEAVY 268 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEec-CC--CCCceeecc
Confidence 999975321 2 266899999986 44 456665543
No 414
>KOG0066|consensus
Probab=99.77 E-value=5.6e-20 Score=155.40 Aligned_cols=183 Identities=23% Similarity=0.288 Sum_probs=123.5
Q ss_pred CCCCCCcHHHHHHHHhcCc--CCCc------eeEEEECCeeC-Cc--ccccceEEEEecCCC-----CCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRV--KGLV------QGEILLNGCPI-SR--TVMSRISGYVAQQDF-----LIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~--~~~~------~G~i~~~g~~~-~~--~~~~~~~~~v~q~~~-----~~~~ltv~e~l~~ 64 (197)
+||||-||||||+.|+..- -||. .-+|..+..+. .. ..-.++..++-.... --...|+.|-+.-
T Consensus 296 VGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~ 375 (807)
T KOG0066|consen 296 VGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKE 375 (807)
T ss_pred cCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 6999999999999998642 1121 22233222221 00 000111111111110 1123466665543
Q ss_pred HHH-ccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235 65 MAK-LTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV 142 (197)
Q Consensus 65 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~ 142 (197)
.+. +... .....+.++..+|.-+|.+ +..+++...+|||-|.||++||||..+|-+|+|||||+.||.....++-
T Consensus 376 v~~ELrai---GA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLd 452 (807)
T KOG0066|consen 376 VADELRAI---GADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLD 452 (807)
T ss_pred HHHHHHHh---ccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehh
Confidence 221 1110 1112346788899999997 5678888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEE-EEecChhHH
Q psy4235 143 NLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL-AYHGQVSKV 191 (197)
Q Consensus 143 ~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i-~~~g~~~~~ 191 (197)
+.|..++ +|.+|++||. .++-..|..|+.+++ .++ .|.|...-+
T Consensus 453 NYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~-qkLhyYrGNY~~F 497 (807)
T KOG0066|consen 453 NYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDN-QKLHYYRGNYTLF 497 (807)
T ss_pred hHHhhhh---heeEEEeccc-chHHHHHHHHhhhhh-hhhhhhcchHHHH
Confidence 9999885 5899999997 589999999999987 444 456665433
No 415
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.76 E-value=1.9e-19 Score=139.43 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=60.0
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCcchHH
Q psy4235 90 LGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACE-SRIVICAIHQPTSGVF 167 (197)
Q Consensus 90 ~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~-~~~iii~th~~~~~~~ 167 (197)
++..+..++..+++|+|++|...+.+. +.+|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+. ++.
T Consensus 49 ~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~ 125 (185)
T smart00534 49 IGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELT 125 (185)
T ss_pred eCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHH
Confidence 344455566778899988874333332 3499999999999999999887764 566777664 78999999986 467
Q ss_pred hhcCe
Q psy4235 168 EKFDT 172 (197)
Q Consensus 168 ~~~d~ 172 (197)
..+|.
T Consensus 126 ~~~~~ 130 (185)
T smart00534 126 KLADE 130 (185)
T ss_pred HHhhc
Confidence 78874
No 416
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.5e-17 Score=148.87 Aligned_cols=128 Identities=27% Similarity=0.374 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT 130 (197)
Q Consensus 55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt 130 (197)
.|||.|...|+.... .-.+.-+.|..+||... +.++..+|||||.||+-||.-|.... -++||||||
T Consensus 783 ~MTveEA~~FF~~~p---------~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT 853 (935)
T COG0178 783 DMTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853 (935)
T ss_pred hccHHHHHHHHhcch---------HHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence 467777777765321 12334466778899864 68899999999999999999999877 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
+||-+...+++++.|.++...|.|||++.|.+ ++.+.||.|+-|- +||.|++.|+|+++.+
T Consensus 854 TGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999986 4789999998873 4689999999999875
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=2.8e-18 Score=134.82 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=85.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||+|||||+|+|++..- +.+.-.|+ |..+..+++.|++..
T Consensus 35 ~G~n~~GKstll~~i~~~~~------------------la~~G~~v---pa~~~~l~~~d~I~~---------------- 77 (204)
T cd03282 35 TGPNMSGKSTYLKQIALLAI------------------MAQIGCFV---PAEYATLPIFNRLLS---------------- 77 (204)
T ss_pred ECCCCCCHHHHHHHHHHHHH------------------HHHcCCCc---chhhcCccChhheeE----------------
Confidence 59999999999999987631 11111233 333444556565532
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~iii~t 159 (197)
.++..+...+..+.+|.|++|+ ..+.+++.+|+++|+|||++|+|+.....+ ..+++.+.+.+.++|++|
T Consensus 78 --------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~T 148 (204)
T cd03282 78 --------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFAT 148 (204)
T ss_pred --------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 2233334556678899999975 555668899999999999999999876665 456777777789999999
Q ss_pred cCCcchHHhhc
Q psy4235 160 HQPTSGVFEKF 170 (197)
Q Consensus 160 h~~~~~~~~~~ 170 (197)
|+.. .+...+
T Consensus 149 H~~~-l~~~~~ 158 (204)
T cd03282 149 HFRD-IAAILG 158 (204)
T ss_pred ChHH-HHHHhh
Confidence 9863 444333
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.70 E-value=2e-17 Score=131.09 Aligned_cols=138 Identities=18% Similarity=0.101 Sum_probs=87.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+|++..-. |. .|..+.. ....++|+.| +|+.+++.+++..+.
T Consensus 36 ~Gpn~sGKstllr~i~~~~~l---~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ls~g~-------------- 90 (216)
T cd03284 36 TGPNMAGKSTYLRQVALIALL---AQ---IGSFVPA--SKAEIGVVDR---IFTRIGASDDLAGGR-------------- 90 (216)
T ss_pred ECCCCCChHHHHHHHHHHHHH---hc---cCCeecc--ccceecceee---EeccCCchhhhccCc--------------
Confidence 599999999999999865321 11 1222221 1244677754 567778877765421
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH--HhhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ--LLTEPQILFCDEP---TTGLDSYSANNVVNLLKQLACE-SRI 154 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~a--l~~~p~llllDEP---ts~LD~~~~~~i~~~l~~l~~~-~~~ 154 (197)
|.=...+..++++ .+.+|+++||||| |+++|.... ...+++.+.+. +.+
T Consensus 91 -----------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~ 145 (216)
T cd03284 91 -----------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAK 145 (216)
T ss_pred -----------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCc
Confidence 1111222223333 3579999999999 888887552 33445555555 789
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
+|++||+. ++..++|++..+.+ +.+...++.+++
T Consensus 146 vi~~TH~~--~l~~l~~~~~~v~~-~~~~~~~~~~~l 179 (216)
T cd03284 146 TLFATHYH--ELTELEGKLPRVKN-FHVAVKEKGGGV 179 (216)
T ss_pred EEEEeCcH--HHHHHhhcCCCeEE-EEEEEEeeCCeE
Confidence 99999985 56788888766665 666655554443
No 419
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=5.7e-16 Score=147.00 Aligned_cols=85 Identities=20% Similarity=0.161 Sum_probs=77.8
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 93 NHRRQVQISGLSGGQRKRLALAVQLLT----------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 93 ~~~~~~~~~~LSgGq~qrv~ia~al~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
....++++.+|||||++|++||+||+. +|++||+||||++||+.+...+++.|+.++..|++|+|+||++
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 445667899999999999999999986 7999999999999999999999999999987789999999997
Q ss_pred cchHHhhcCeEEEEeC
Q psy4235 163 TSGVFEKFDTVSLLAH 178 (197)
Q Consensus 163 ~~~~~~~~d~v~~l~~ 178 (197)
+....++|+|.|++.
T Consensus 1021 -~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1021 -EFRERIPHRILVKKT 1035 (1042)
T ss_pred -HHHHhhCCEEEEEEC
Confidence 478999999999975
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.64 E-value=7.1e-17 Score=127.91 Aligned_cols=89 Identities=29% Similarity=0.457 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
+.+.+.+..+.+... .||||||.+++||.-|+ ..++++|||||.++||...+..+.++|+++.++ .-+|
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~i 193 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFI 193 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEE
T ss_pred ccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 445566666655432 89999999999997664 578999999999999999999999999998654 6788
Q ss_pred EEecCCcchHHhhcCeEEEEeC
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~~ 178 (197)
++||+. ..+..+|+.+.+..
T Consensus 194 i~Th~~--~~~~~a~~~~~v~~ 213 (220)
T PF02463_consen 194 ITTHNP--EMFEDADKLIGVTM 213 (220)
T ss_dssp EE-S-H--HHHTT-SEEEEEEE
T ss_pred cccccc--cccccccccccccc
Confidence 999984 57899998766543
No 421
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.63 E-value=9.1e-16 Score=137.00 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=69.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchH
Q psy4235 98 VQISGLSGGQRKRLALAVQLL----------TEPQILFCDEPT-TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~ia~al~----------~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~ 166 (197)
.++..|||||+||++||+||+ .+|+++|||||| ++||+.....+.+.|+++ .+.++|++||++. .
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~ 539 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--D 539 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--c
Confidence 367899999999999999987 599999999998 789999999999999998 5789999999963 4
Q ss_pred HhhcCeEEEEeCCc
Q psy4235 167 FEKFDTVSLLAHGG 180 (197)
Q Consensus 167 ~~~~d~v~~l~~gg 180 (197)
...||++++|.+.|
T Consensus 540 ~~~~d~~~~l~~~~ 553 (562)
T PHA02562 540 PQKFDRHLKMEKVG 553 (562)
T ss_pred hhhhhcEEEEEEEC
Confidence 67899999998633
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.62 E-value=2e-15 Score=119.47 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC---CCEEEEEecCCc
Q psy4235 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE---SRIVICAIHQPT 163 (197)
Q Consensus 107 q~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~---~~~iii~th~~~ 163 (197)
+.||++++++++.+|+++|+|||++|+|+.....+ ..+++.+.+. +.++|++||+..
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 45899999999999999999999999999765554 5688888654 248999999864
No 423
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=9.1e-16 Score=121.14 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy4235 106 GQRKRLALAVQLLTEPQILFCDEPT-----TGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 106 Gq~qrv~ia~al~~~p~llllDEPt-----s~LD~~~~~~i~~~l~~l~~ 150 (197)
-|++++.||++++.+|+++++|||| ++||+..++.+.+.+++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3899999999999999999999999 99999999999999999864
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.62 E-value=3.6e-16 Score=143.51 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=56.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCc
Q psy4235 98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~~~iii~th~~~ 163 (197)
...+++|+||++++.|++++ .+|.++|+|||++|+||.....+ ..++..+.+.+.++|++||+..
T Consensus 381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 34677999999999998876 79999999999999999999998 5778888777889999999863
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.3e-14 Score=130.34 Aligned_cols=139 Identities=22% Similarity=0.383 Sum_probs=108.0
Q ss_pred CCCCCHHHHHHHHHHccCCccccHHHHHHHHHH------HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhC--CCE
Q psy4235 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITR------VMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTE--PQI 123 (197)
Q Consensus 53 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~--p~l 123 (197)
+..|++.+.+.|+..+..... ...-.+..+.+ .|-.+||... +++...+|||||.||+.||..+-.+ --+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl 504 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 504 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence 345788888888766542211 10111122222 3444688765 6889999999999999999988654 468
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHhh
Q psy4235 124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~~ 194 (197)
++||||+.||-+...+++++.|++++..|.|+|+|.||. +....||+++-|- +||.|++.|+++++++.
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 999999999999999999999999999999999999985 5789999998873 46999999999998764
No 426
>KOG0063|consensus
Probab=99.61 E-value=2.1e-15 Score=127.31 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
....++++.+.|+..+++-+..||||+.||.+||++.++++++.++|||.+.||...+..-...|+.+.....-||++.|
T Consensus 192 ~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEH 271 (592)
T KOG0063|consen 192 DNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEH 271 (592)
T ss_pred ccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEe
Confidence 34567888888888999999999999999999999999999999999999999999999999999999887889999999
Q ss_pred CCcchHHhhcCeEEEEe
Q psy4235 161 QPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~ 177 (197)
|.. .+--..|-+.++.
T Consensus 272 DLs-VLDylSDFiCcLY 287 (592)
T KOG0063|consen 272 DLS-VLDYLSDFICCLY 287 (592)
T ss_pred ech-HHHhhhcceeEEe
Confidence 974 5666678777774
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.60 E-value=3e-15 Score=133.82 Aligned_cols=75 Identities=27% Similarity=0.383 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE
Q psy4235 101 SGLSGGQRKRLALAVQLLTE----PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l 176 (197)
..|||||+||++||++++.. |++||||||++|||+.....+.+.|+++++ +.+||++||++. +...||+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 36899999999999999985 699999999999999999999999999974 789999999973 45789999999
Q ss_pred eC
Q psy4235 177 AH 178 (197)
Q Consensus 177 ~~ 178 (197)
.+
T Consensus 516 ~k 517 (563)
T TIGR00634 516 EK 517 (563)
T ss_pred EE
Confidence 86
No 428
>PRK10869 recombination and repair protein; Provisional
Probab=99.57 E-value=1.3e-14 Score=129.16 Aligned_cols=74 Identities=35% Similarity=0.451 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235 102 GLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 102 ~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~ 177 (197)
.+||||+||++||++++. +|+++|+|||++|||+.+...+.+.|+++++ +.+||++||++. +..+||+++.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 479999999999999997 6899999999999999999999999999964 689999999973 568999999998
Q ss_pred C
Q psy4235 178 H 178 (197)
Q Consensus 178 ~ 178 (197)
+
T Consensus 507 k 507 (553)
T PRK10869 507 K 507 (553)
T ss_pred c
Confidence 6
No 429
>PRK03918 chromosome segregation protein; Provisional
Probab=99.55 E-value=1.8e-14 Score=134.80 Aligned_cols=80 Identities=29% Similarity=0.357 Sum_probs=69.9
Q ss_pred cccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235 97 QVQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170 (197)
Q Consensus 97 ~~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~ 170 (197)
+.++..|||||+| |++||++++.+|+++|+||||++||+..+..+.++|..+...+.++|++||++ .+...|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhC
Confidence 4567899999999 45556678899999999999999999999999999999876678999999996 357889
Q ss_pred CeEEEEeC
Q psy4235 171 DTVSLLAH 178 (197)
Q Consensus 171 d~v~~l~~ 178 (197)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999984
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.54 E-value=3.3e-15 Score=137.45 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=64.9
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235 95 RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAIHQPTSGVFEKFDTV 173 (197)
Q Consensus 95 ~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~~~~~iii~th~~~~~~~~~~d~v 173 (197)
...+.++++|+||+|++.|++++ .+|.++|+|||++|+||.....+. .++..+.+.+.++|++||+.. .....+++.
T Consensus 383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~ 460 (782)
T PRK00409 383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNRE 460 (782)
T ss_pred chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCC
Confidence 34456788999999999999988 899999999999999999998885 467777777889999999953 444555555
Q ss_pred EEE
Q psy4235 174 SLL 176 (197)
Q Consensus 174 ~~l 176 (197)
.+.
T Consensus 461 ~v~ 463 (782)
T PRK00409 461 GVE 463 (782)
T ss_pred CeE
Confidence 444
No 431
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.53 E-value=4.1e-14 Score=134.22 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=73.0
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHH
Q psy4235 96 RQVQISGLSGGQRKRLALAVQLLT--------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVF 167 (197)
Q Consensus 96 ~~~~~~~LSgGq~qrv~ia~al~~--------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~ 167 (197)
.++++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..++..|.+|+|+||.. ....
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHH
Confidence 457899999999999999999996 8999999999999999999999999999988899999999975 4566
Q ss_pred hhcCeEEEEeC
Q psy4235 168 EKFDTVSLLAH 178 (197)
Q Consensus 168 ~~~d~v~~l~~ 178 (197)
.+..++.|-..
T Consensus 1022 ~i~~qi~V~k~ 1032 (1047)
T PRK10246 1022 RIPVQIKVKKI 1032 (1047)
T ss_pred hccceEEEEEC
Confidence 66677777654
No 432
>PRK01156 chromosome segregation protein; Provisional
Probab=99.52 E-value=1.1e-13 Score=129.77 Aligned_cols=82 Identities=27% Similarity=0.334 Sum_probs=69.1
Q ss_pred ccCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC--CEEEEEecCCcchHHh
Q psy4235 98 VQISGLSGGQRKRLAL------AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ES--RIVICAIHQPTSGVFE 168 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~i------a~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~--~~iii~th~~~~~~~~ 168 (197)
.++..|||||++|++| |++++.+|++++|||||++||+..+..+.++++.... .+ .++|++||+.. ...
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHH
Confidence 4688999999999975 4899999999999999999999999999999986543 33 48999999973 457
Q ss_pred hcCeEEEEeC-CcE
Q psy4235 169 KFDTVSLLAH-GGL 181 (197)
Q Consensus 169 ~~d~v~~l~~-gg~ 181 (197)
.||+++.+.. ||.
T Consensus 875 ~~d~ii~~~~~~~~ 888 (895)
T PRK01156 875 VADVAYEVKKSSGS 888 (895)
T ss_pred hcCeEEEEEecCCe
Confidence 9999999983 453
No 433
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.50 E-value=2.9e-13 Score=104.23 Aligned_cols=89 Identities=13% Similarity=-0.044 Sum_probs=72.6
Q ss_pred cCCcccccccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 90 LGINHRRQVQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLD---SYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 90 ~~l~~~~~~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
.+.....+..+..+|+|++| ......+...+|+++++|||++.+| ...+..+.++++.+++.|.++|+++|
T Consensus 59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~ 138 (187)
T cd01124 59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSE 138 (187)
T ss_pred cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 45555667888999999998 5555555678999999999999999 88888889999998888999999999
Q ss_pred CCcc--------hHHhhcCeEEEEeC
Q psy4235 161 QPTS--------GVFEKFDTVSLLAH 178 (197)
Q Consensus 161 ~~~~--------~~~~~~d~v~~l~~ 178 (197)
+... .+..+||.++.|+.
T Consensus 139 ~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 139 QSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred cccCCCcccCcCceeEeeeEEEEEEE
Confidence 7642 16788999998874
No 434
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=7.6e-14 Score=135.14 Aligned_cols=72 Identities=26% Similarity=0.202 Sum_probs=63.1
Q ss_pred ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCcchH
Q psy4235 98 VQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-----ESRIVICAIHQPTSGV 166 (197)
Q Consensus 98 ~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~~~iii~th~~~~~~ 166 (197)
..++.||+|||| |++||+|++.+|++|+|||||++||+.+...+.+.|..+.. .|.++|++||++. ++
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~ 1273 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FV 1273 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HH
Confidence 345789999999 99999999999999999999999999999999999988732 3789999999974 67
Q ss_pred Hhhc
Q psy4235 167 FEKF 170 (197)
Q Consensus 167 ~~~~ 170 (197)
..+|
T Consensus 1274 ~~~~ 1277 (1311)
T TIGR00606 1274 ELLG 1277 (1311)
T ss_pred HHHh
Confidence 7664
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.48 E-value=7.1e-14 Score=110.59 Aligned_cols=64 Identities=34% Similarity=0.526 Sum_probs=53.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 99 QISGLSGGQRKRLALAVQLLTEP---QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 99 ~~~~LSgGq~qrv~ia~al~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
+...+|.|++|.+.++.++...+ .++++|||-++|+|..+..+.++|++....+.-+|++||.+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 34667999999999998888776 89999999999999999999999988876578899999986
No 436
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.46 E-value=2.7e-12 Score=98.09 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=65.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235 98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~ 177 (197)
+.....|.||-=---+.+.+ ++.-++|||||-++|.|.-+..++..|+++++.|.-+||+||.+. ...---.+|+-+.
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi-LlAiP~A~I~~~~ 202 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI-LLAIPGAEIYEIS 202 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh-heeCCCcEEEEEe
Confidence 34556899997655555554 467899999999999999999999999999999999999999985 3444456788888
Q ss_pred CCc
Q psy4235 178 HGG 180 (197)
Q Consensus 178 ~gg 180 (197)
.+|
T Consensus 203 ~~g 205 (233)
T COG3910 203 ESG 205 (233)
T ss_pred cCC
Confidence 755
No 437
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.45 E-value=1.5e-13 Score=131.25 Aligned_cols=79 Identities=25% Similarity=0.313 Sum_probs=68.9
Q ss_pred ccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235 96 RQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171 (197)
Q Consensus 96 ~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d 171 (197)
.+.++..|||||+||++||++++ .+|+++||||||++||+..+..+.++|+.+++ +.++|++||++. ....||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhh
Confidence 45678899999999999999984 67799999999999999999999999999865 478999999974 457899
Q ss_pred eEEEEe
Q psy4235 172 TVSLLA 177 (197)
Q Consensus 172 ~v~~l~ 177 (197)
+++.+.
T Consensus 1160 ~~~~~~ 1165 (1179)
T TIGR02168 1160 QLYGVT 1165 (1179)
T ss_pred hHeeee
Confidence 987654
No 438
>PRK13695 putative NTPase; Provisional
Probab=99.44 E-value=4.1e-14 Score=108.34 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=63.4
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235 97 QVQISGLSGGQRKRLALAVQLLTEPQILFCDEP--TTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174 (197)
Q Consensus 97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP--ts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~ 174 (197)
.+....+|++++-+..+++..+.+|+++++||| +.++|+. +.+.+.++.+.+.++|+++|+. .+..++|++.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~ 146 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIK 146 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch--hhHHHHHHHh
Confidence 345567999999999999999999999999994 4455544 4555555555688999999973 4678899999
Q ss_pred EEeCCcEEEE
Q psy4235 175 LLAHGGLLAY 184 (197)
Q Consensus 175 ~l~~gg~i~~ 184 (197)
.+.+ |++..
T Consensus 147 ~~~~-~~i~~ 155 (174)
T PRK13695 147 SRPG-GRVYE 155 (174)
T ss_pred ccCC-cEEEE
Confidence 9987 77754
No 439
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.38 E-value=2.2e-12 Score=96.20 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTT----------GLDSYSANNVVNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 102 ~LSgGq~qrv~ia~al~~~p~llllDEPts----------~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~ 163 (197)
..+..+.++...+++...+|+++++|||++ +.|....+.+.+++...++.+.++++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 345556667888999999999999999995 44555556666666666556889999999764
No 440
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.38 E-value=1.3e-12 Score=125.16 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=68.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235 98 VQISGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v 173 (197)
+++..||||||++++||++++. +|+++|||||+++||+..+..+.++|++++. +..+|++||+.. ....||++
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhccee
Confidence 4567899999999999999985 7899999999999999999999999999865 467999999963 56899999
Q ss_pred EEEeC
Q psy4235 174 SLLAH 178 (197)
Q Consensus 174 ~~l~~ 178 (197)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 87764
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.37 E-value=9.1e-12 Score=99.64 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCEEEEEecCCcc-------hH
Q psy4235 102 GLSGGQRKRLALAVQLL----TEPQILFCDEPTTGL----DSYSANNVVNLLKQLACESRIVICAIHQPTS-------GV 166 (197)
Q Consensus 102 ~LSgGq~qrv~ia~al~----~~p~llllDEPts~L----D~~~~~~i~~~l~~l~~~~~~iii~th~~~~-------~~ 166 (197)
.+|+++.++..+.+.+- .+|+++++||||+++ |+...+.+.+.++.++++|.++++ ||+... .+
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~ 173 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTIL 173 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeE
Confidence 36666655555544433 369999999999999 888888999999999877776655 555321 12
Q ss_pred HhhcCeEEEEe
Q psy4235 167 FEKFDTVSLLA 177 (197)
Q Consensus 167 ~~~~d~v~~l~ 177 (197)
..+||-++.|.
T Consensus 174 ~~~~DgvI~L~ 184 (230)
T PRK08533 174 RTAATMLIRLE 184 (230)
T ss_pred EEeeeEEEEEE
Confidence 44567777665
No 442
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.36 E-value=2.5e-12 Score=103.82 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=62.1
Q ss_pred CCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235 100 ISGLSGGQ--------RKRLALAVQLLTEPQILFCDEPTTGLDSYSANN-VVNLLKQLACESRIVICAIHQPTSGVFEKF 170 (197)
Q Consensus 100 ~~~LSgGq--------~qrv~ia~al~~~p~llllDEPts~LD~~~~~~-i~~~l~~l~~~~~~iii~th~~~~~~~~~~ 170 (197)
...+|||+ +||+++||++..+++|.+| ||+.+|+.+... +. +.+++..+.+.|+.+|... ....+
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~ 200 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIF 200 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCC
Confidence 45579999 9999999999999999999 999999655443 44 5566556789999999974 47889
Q ss_pred CeEEEEeCCcEE
Q psy4235 171 DTVSLLAHGGLL 182 (197)
Q Consensus 171 d~v~~l~~gg~i 182 (197)
|.|.+|.. |.+
T Consensus 201 paI~vl~s-~sr 211 (249)
T cd01128 201 PAIDILKS-GTR 211 (249)
T ss_pred CeEEEcCC-CCc
Confidence 99999998 554
No 443
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.34 E-value=1.2e-11 Score=114.80 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=57.8
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHH---------hhcCeEEEEeCCcEEEEec
Q psy4235 118 LTEPQILFCDEPTTGL-DSYSANNVVNLLKQLACESRIVICAIHQPTSGVF---------EKFDTVSLLAHGGLLAYHG 186 (197)
Q Consensus 118 ~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~---------~~~d~v~~l~~gg~i~~~g 186 (197)
..+|+++++|||+.+| |+..++.+.+.++.+++.+.+++++||++. .+. +.|+.+++|.+ +.+...+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n-~~a~~~~ 726 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPN-GAAREPG 726 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCC-ccccccc
Confidence 5799999999999999 799999999999999988999999999975 443 57999999977 7765444
No 444
>PRK02224 chromosome segregation protein; Provisional
Probab=99.32 E-value=4.9e-12 Score=118.55 Aligned_cols=78 Identities=27% Similarity=0.322 Sum_probs=67.1
Q ss_pred cCCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCCcch
Q psy4235 99 QISGLSGGQRK------RLALAVQLLTE-----P-QILFCDEPTTGLDSYSANNVVNLLKQLACESR-IVICAIHQPTSG 165 (197)
Q Consensus 99 ~~~~LSgGq~q------rv~ia~al~~~-----p-~llllDEPts~LD~~~~~~i~~~l~~l~~~~~-~iii~th~~~~~ 165 (197)
.+..||||||+ |++++++++.+ | +++|+||||++||+..+..+.++|+.+...|. +||++||++. .
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-L 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH-H
Confidence 46799999999 89999998864 2 67999999999999999999999999876554 7999999974 4
Q ss_pred HHhhcCeEEEEeC
Q psy4235 166 VFEKFDTVSLLAH 178 (197)
Q Consensus 166 ~~~~~d~v~~l~~ 178 (197)
...||+++.+..
T Consensus 857 -~~~ad~~~~~~~ 868 (880)
T PRK02224 857 -VGAADDLVRVEK 868 (880)
T ss_pred -HHhcCeeEEeec
Confidence 467999999974
No 445
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=1.2e-11 Score=98.34 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=37.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCc
Q psy4235 118 LTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE-SRIVICAIHQPT 163 (197)
Q Consensus 118 ~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~-~~~iii~th~~~ 163 (197)
+.+|.++|+|||.+|.|+.....+ ..+++.+.+. +.++|++||+..
T Consensus 108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 458999999999999997777764 5677777765 789999999864
No 446
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.31 E-value=1.2e-10 Score=100.97 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=93.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC---Cc--------ccccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SR--------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~---~~--------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
+|+||+|||||+++|+|..+ ++.|.|.+.|+.- .. ..+++.+.++.+.+.. +.+-+.-..
T Consensus 164 ~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~-----~~~r~~~~~--- 234 (438)
T PRK07721 164 FAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP-----ALMRIKGAY--- 234 (438)
T ss_pred ECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC-----HHHHHHHHH---
Confidence 59999999999999999988 6999999965443 21 1245678888764331 111111000
Q ss_pred CCccccHHHHHHHHHHHHHHcCCcccccccCCCCCH-HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSG-GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg-Gq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
.--.+.+.+..-|-+-.. -..+++. -|-+| .|+. ++.+|+ .|+|+||.....+.+++.++
T Consensus 235 ---------~a~~iAEyfr~~g~~Vll--~~Dsltr~A~A~r-Eisl-~~ge~P------~~~G~dp~~~~~l~~ller~ 295 (438)
T PRK07721 235 ---------TATAIAEYFRDQGLNVML--MMDSVTRVAMAQR-EIGL-AVGEPP------TTKGYTPSVFAILPKLLERT 295 (438)
T ss_pred ---------HHHHHHHHHHHCCCcEEE--EEeChHHHHHHHH-HHHH-hcCCCC------ccccCCHHHHHHHHHHHHHh
Confidence 000111222111211000 0011110 00011 0000 112222 37899999999999999998
Q ss_pred Hh--CCC-----EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 149 AC--ESR-----IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 149 ~~--~~~-----~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
.. +|. ||++.+||+. ..+||++..+.+ |+++.+++..+
T Consensus 296 ~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~d-G~Ivls~~la~ 340 (438)
T PRK07721 296 GTNASGSITAFYTVLVDGDDMN---EPIADTVRGILD-GHFVLDRQLAN 340 (438)
T ss_pred cCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecC-EEEEEeccHHH
Confidence 73 464 8999999975 388999999988 99998887654
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.27 E-value=3.3e-11 Score=100.39 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccc--cceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM--SRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~--~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
.||+|||||||+++|++.++ +..|.+.+.+ ...... ...+.++.+... -....|.
T Consensus 150 ~G~tGsGKTTll~al~~~~~-~~~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~------------------- 207 (308)
T TIGR02788 150 SGGTGSGKTTFLKSLVDEIP-KDERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTP------------------- 207 (308)
T ss_pred ECCCCCCHHHHHHHHHccCC-ccccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCH-------------------
Confidence 49999999999999999987 6778777753 111111 112222222100 0000111
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
.-.++.+|-.+|+++++|||.+ .+.+++++.+...+.+++.
T Consensus 208 --------------------------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~ 248 (308)
T TIGR02788 208 --------------------------------KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSIT 248 (308)
T ss_pred --------------------------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEE
Confidence 1134456677999999999996 4466777776533345688
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++|... +....+|+..|.. |.+...|.+.+.+
T Consensus 249 T~Ha~~--~~~~~~Rl~~l~~-~~~~~~g~~~~~~ 280 (308)
T TIGR02788 249 TLHAGS--PEEAFEQLALMVK-SSQAGLGLDFAYI 280 (308)
T ss_pred EEeCCC--HHHHHHHHHHHhh-ccccccCCCHHHH
Confidence 888763 6777999988876 6666667776654
No 448
>PRK00064 recF recombination protein F; Reviewed
Probab=99.26 E-value=1.9e-11 Score=103.96 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc-
Q psy4235 101 SGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF- 170 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~- 170 (197)
..+|.||+|++.||++|+ .+|+++|||||+++||+..+..+++.+.++ +..+++++|+.. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 579999999999999886 799999999999999999999999998764 347888888864 444443
Q ss_pred -CeEEEEeCCcEE
Q psy4235 171 -DTVSLLAHGGLL 182 (197)
Q Consensus 171 -d~v~~l~~gg~i 182 (197)
++++.+++ |.+
T Consensus 348 ~~~i~~v~~-G~i 359 (361)
T PRK00064 348 NAKIFHVEQ-GKI 359 (361)
T ss_pred cCcEEEEeC-CEE
Confidence 47888887 765
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.20 E-value=7.7e-11 Score=92.21 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 112 ~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~ 177 (197)
+++++|..+|+++++|||. |++....+ + +.+..|..++.++|... +...++|++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4788999999999999996 55543322 3 34456889999999863 456677776553
No 450
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=1.4e-11 Score=97.68 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=42.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCCcchHHhhc
Q psy4235 118 LTEPQILFCDEPTTGLDSYSANNVVNL-LKQLACE-SRIVICAIHQPTSGVFEKF 170 (197)
Q Consensus 118 ~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~-~~~iii~th~~~~~~~~~~ 170 (197)
+.+|.++|+|||++|+++.....+... ++.+.+. +.++|++||+.. .+...+
T Consensus 107 ~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e-l~~~~~ 160 (218)
T cd03286 107 ATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS-LCDEFH 160 (218)
T ss_pred CCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH-HHHHhh
Confidence 468999999999999999999988887 6777765 889999999863 444443
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.17 E-value=1.7e-11 Score=86.35 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=43.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFM 65 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~ 65 (197)
+||||||||||++++. +|++.++|.++.. ....+.++|++|+ +|+. |++|||.+.
T Consensus 21 ~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~~Ni~~~ 78 (107)
T cd00820 21 TGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLRLNIFLI 78 (107)
T ss_pred EcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHHhhceee
Confidence 5999999999999984 6889999998753 2345667888887 4444 899999874
No 452
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.15 E-value=1.9e-10 Score=108.34 Aligned_cols=80 Identities=29% Similarity=0.385 Sum_probs=70.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHh
Q psy4235 97 QVQISGLSGGQRKRLALAVQLL------TE--PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168 (197)
Q Consensus 97 ~~~~~~LSgGq~qrv~ia~al~------~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~ 168 (197)
.+++..|||||+-.++||.+|+ .+ -++++|||||..||+.....++++|..+...+.+||||||+. .+..
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e 887 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKE 887 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHH
Confidence 3678999999999888888765 45 699999999999999999999999999988889999999985 5678
Q ss_pred hcCeEEEEeC
Q psy4235 169 KFDTVSLLAH 178 (197)
Q Consensus 169 ~~d~v~~l~~ 178 (197)
.+|.++.+..
T Consensus 888 ~~~~~i~V~k 897 (908)
T COG0419 888 RADVRIRVKK 897 (908)
T ss_pred hCCeEEEEEe
Confidence 8999888875
No 453
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.8e-10 Score=98.10 Aligned_cols=60 Identities=30% Similarity=0.314 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235 101 SGLSGGQRKRLALAVQLLT---------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~~---------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~ 163 (197)
..+|.||+|++.||.+|+. +|++||||||+++||+..+..+++.|.+. |..+++++|+..
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3599999999999999999 99999999999999999999999999764 668999999863
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.05 E-value=6.3e-09 Score=83.24 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcc------hHHhh
Q psy4235 101 SGLSGGQRKRLALAVQLLT--EPQILFCDEPTTG---LDSYSANNVVNLLKQLACESRIVICAIHQPTS------GVFEK 169 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~~--~p~llllDEPts~---LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~------~~~~~ 169 (197)
...|.++.+.+..+..++. +|+++++||||+. .|.....++++.++.+++.+.|+++++|+... .+..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3457788999999999997 9999999999964 45555556666677767778899999887542 14566
Q ss_pred cCeEEEEeC
Q psy4235 170 FDTVSLLAH 178 (197)
Q Consensus 170 ~d~v~~l~~ 178 (197)
+|-++.|..
T Consensus 179 ~DgvI~L~~ 187 (234)
T PRK06067 179 CDVYLKLRA 187 (234)
T ss_pred eEEEEEEEe
Confidence 777777753
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.03 E-value=1.1e-09 Score=94.61 Aligned_cols=133 Identities=21% Similarity=0.142 Sum_probs=91.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|+||+|||||+++|++..+ ++.|.|.+.|+.. .+|.|++......
T Consensus 162 ~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg---------------------~ev~e~~~~~l~~------------ 207 (432)
T PRK06793 162 FAGSGVGKSTLLGMIAKNAK-ADINVISLVGERG---------------------REVKDFIRKELGE------------ 207 (432)
T ss_pred ECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCc---------------------ccHHHHHHHHhhh------------
Confidence 58999999999999999887 6888776555331 2566654422111
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235 81 KTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLL-------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACES 152 (197)
Q Consensus 81 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~-------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 152 (197)
-++.. ..-....+.|.|+|+|+..+.+.+ .++-++++|+||+..|+. +++...+.+....|
T Consensus 208 ---------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G 276 (432)
T PRK06793 208 ---------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGG 276 (432)
T ss_pred ---------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCC
Confidence 01110 112456788999999999999888 799999999999999995 66666666665457
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY 184 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~ 184 (197)
.+..+.+|.. .+.+.+.+ .. +|.+..
T Consensus 277 ~~~~~~s~l~--~L~ERag~---~~-~GSiT~ 302 (432)
T PRK06793 277 KTLLMESYMK--KLLERSGK---TQ-KGSITG 302 (432)
T ss_pred eeeeeeccch--hHHHHhcc---CC-CcceEE
Confidence 7877777742 33444443 34 476543
No 456
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.00 E-value=7.1e-10 Score=107.83 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=55.2
Q ss_pred cccccCCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 95 RRQVQISGLSGGQRKRLA----LAVQ--------LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 95 ~~~~~~~~LSgGq~qrv~----ia~a--------l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
..+++++.|||||||+++ +|++ +..+|++++|||||++||+.++..+++++.++ +..+||+||+.
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 345567899999999996 5655 55899999999999999999999999999888 67788888753
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=2.5e-08 Score=71.56 Aligned_cols=60 Identities=32% Similarity=0.293 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCEEEEEec
Q psy4235 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN------LLKQLACESRIVICAIH 160 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~------~l~~l~~~~~~iii~th 160 (197)
...++.+..+..++++-...|.++++||+..-.+......... ...........+|.++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 3456777777777777777799999999999999988776654 22223334667788877
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.98 E-value=2.1e-09 Score=86.39 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=37.9
Q ss_pred HHhhCCCEEEEeCCCCC------CCHHHHHHHHHHHHHHHhC-CCEEEEEecCC
Q psy4235 116 QLLTEPQILFCDEPTTG------LDSYSANNVVNLLKQLACE-SRIVICAIHQP 162 (197)
Q Consensus 116 al~~~p~llllDEPts~------LD~~~~~~i~~~l~~l~~~-~~~iii~th~~ 162 (197)
+...+|+++++| |+++ +|+.....+++.|++++++ +.++++++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7754 7999999999999998765 78888888865
No 459
>PRK14079 recF recombination protein F; Provisional
Probab=98.97 E-value=2e-09 Score=91.15 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235 101 SGLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d 171 (197)
..+|+||++++.+|+.|+ .+|++++||||+++||+..+..+.+.|.... .+ ++++-+. ..-||
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~-~it~t~~----~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QA-IVAGTEA----PPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cE-EEEcCCC----CCCCc
Confidence 358999999999999999 8999999999999999999999998886532 23 3443332 46689
Q ss_pred eEEEEeCCcEEE
Q psy4235 172 TVSLLAHGGLLA 183 (197)
Q Consensus 172 ~v~~l~~gg~i~ 183 (197)
+++.+.+ |.+.
T Consensus 334 ~~~~~~~-~~~~ 344 (349)
T PRK14079 334 LTLRIEA-GVFT 344 (349)
T ss_pred eEEEEec-cEec
Confidence 9999987 7664
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.94 E-value=3e-09 Score=93.05 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=83.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||+||||++..|++.+. ...|. +.++++.++. ...++.|++.+++........ ...
T Consensus 262 vGpnGvGKTTTiaKLA~~~~-~~~G~--------------~kV~LI~~Dt---~RigA~EQLr~~AeilGVpv~---~~~ 320 (484)
T PRK06995 262 MGPTGVGKTTTTAKLAARCV-MRHGA--------------SKVALLTTDS---YRIGGHEQLRIYGKILGVPVH---AVK 320 (484)
T ss_pred ECCCCccHHHHHHHHHHHHH-HhcCC--------------CeEEEEeCCc---cchhHHHHHHHHHHHhCCCee---ccC
Confidence 69999999999999998765 34442 2468888875 346899999988765432111 111
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRK-RLALAVQLLTEP-----QILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~q-rv~ia~al~~~p-----~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
...+......++.+.....+.+...+++- .+.-..+++.++ .+|+||.++.+ ..+.+.++.++..+.+
T Consensus 321 ~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~f~~~~~~ 394 (484)
T PRK06995 321 DAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQAYRGPGLA 394 (484)
T ss_pred CchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHHhccCCCC
Confidence 22333445556666555666665444432 233444455554 68999999877 3445555555555555
Q ss_pred EEEEecC
Q psy4235 155 VICAIHQ 161 (197)
Q Consensus 155 iii~th~ 161 (197)
-+|.|+-
T Consensus 395 g~IlTKl 401 (484)
T PRK06995 395 GCILTKL 401 (484)
T ss_pred EEEEeCC
Confidence 5666664
No 461
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.93 E-value=2.1e-08 Score=93.83 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=48.3
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHH
Q psy4235 113 LAVQLLTEPQILFCDEPTTGL-DSYSANNVVNLLKQLACESRIVICAIHQPTSGVF 167 (197)
Q Consensus 113 ia~al~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~ 167 (197)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.+.+++++||++. .+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh
Confidence 567888999999999999999 799999999999999888999999999975 444
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.89 E-value=1.3e-09 Score=85.05 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
.||||||||||.++|++++. .|.+. +++++.. +..++..+............. ....
T Consensus 5 ~G~~GsGKSTl~~~l~~~l~---~~~~~----------------v~~~D~~-~~~~~~~~~~~~~~~~~~~~~---~~~~ 61 (198)
T cd02023 5 AGGSGSGKTTVAEEIIEQLG---NPKVV----------------IISQDSY-YKDLSHEELEERKNNNYDHPD---AFDF 61 (198)
T ss_pred ECCCCCCHHHHHHHHHHHhC---CCCeE----------------EEEeccc-ccccccccHHHhccCCCCCCC---cccH
Confidence 49999999999999998763 22232 2222211 111122221111100000000 0111
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY 136 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~ 136 (197)
+...+.+..+......+.+..++|.|++++..+ .+..++++|+|.|+.+.++.
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 234456666666666777888999999876655 57889999999999998863
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.89 E-value=6.4e-09 Score=80.50 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=49.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC--CCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD--FLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+++|+|+++ ++.|.|.+.+..-........+++++|.. ..++..++.+.+....+...
T Consensus 31 ~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p 101 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP 101 (186)
T ss_pred ECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC
Confidence 59999999999999999988 78999999764321112223456666543 45677899999888766543
No 464
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.83 E-value=7.2e-11 Score=104.00 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=63.6
Q ss_pred HHHHcCCcccccccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235 86 VMENLGINHRRQVQISGLSGGQRKRLALA--VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 86 ~l~~~~l~~~~~~~~~~LSgGq~qrv~ia--~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~ 163 (197)
+++.+++.+..++.+..+|+|++|||.|+ .++...|+.. +..++.+.++++.+++.|.|+|+++|+..
T Consensus 99 ~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 99 VVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 34556667777888889999999999999 5666665443 46778899999999888999999999864
Q ss_pred ch--------HHhhcCeEEEEe
Q psy4235 164 SG--------VFEKFDTVSLLA 177 (197)
Q Consensus 164 ~~--------~~~~~d~v~~l~ 177 (197)
.. ...+||.|+.|+
T Consensus 169 ~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 169 EYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred cccccccCCceeEeeeeEEEEE
Confidence 20 256789999886
No 465
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.80 E-value=1.4e-08 Score=69.49 Aligned_cols=52 Identities=31% Similarity=0.513 Sum_probs=40.3
Q ss_pred ccccCCCCCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 96 RQVQISGLSGGQR-KRLALAVQLL------T------EPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 96 ~~~~~~~LSgGq~-qrv~ia~al~------~------~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
..+..+.+||||+ ..+.+|.+++ . .|++++|||||++||+.....+++++++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3567899999999 4444444332 3 3799999999999999999999999874
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.74 E-value=1.1e-07 Score=80.38 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174 (197)
Q Consensus 112 ~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~ 174 (197)
+++++|-.+|+++++||+. |+.+....++ .+..|..++.++|... +....+|++
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHH
Confidence 3567888899999999997 8877654443 3456888888888642 345555554
No 467
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.68 E-value=3.1e-08 Score=92.60 Aligned_cols=67 Identities=19% Similarity=0.083 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCe
Q psy4235 102 GLSGGQRKRLALAVQLLT--EPQILFCDEP---TTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDT 172 (197)
Q Consensus 102 ~LSgGq~qrv~ia~al~~--~p~llllDEP---ts~LD~~~~~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~ 172 (197)
.+|.=+.....++.+|-. ++.++|+||| |+.+|.. .....++..+.+. +..++++||.. ++..++++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 455555555666666554 8999999999 8888844 3456666777665 57899999984 46677764
No 468
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.60 E-value=1.1e-07 Score=86.17 Aligned_cols=103 Identities=19% Similarity=0.316 Sum_probs=67.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee--------EEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG--------EILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G--------~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~ 72 (197)
+||||+|||||.++|.+..+ +..| -|.+++..+.. ......+-.+.. .
T Consensus 181 ~Gp~GtGKTTLAr~i~~~~~-~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg~-~---- 236 (615)
T TIGR02903 181 YGPPGVGKTTAARLALEEAK-KLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLGS-V---- 236 (615)
T ss_pred ECCCCCCHHHHHHHHHHhhh-hccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcCC-c----
Confidence 59999999999999998765 3333 24444433210 000001111110 0
Q ss_pred cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 73 RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.....+.+.+.++.+|+.......+..+||| +|+||| +..||+..+..+.+.+++
T Consensus 237 ---~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 237 ---HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred ---cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 0111233455678889888888888999999 999999 799999999999999976
No 469
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.57 E-value=1.2e-07 Score=70.54 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 81 KTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQL-----LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 81 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al-----~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
..+.+++...+.. -....+...+|.+++++....... ...++++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666666543 223445667889988877666553 3345555 99999999999999988764
No 470
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.56 E-value=1.8e-08 Score=80.27 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=33.5
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHH-HHHHHHHhCCCEEEEEecCCcc-------hHHhhcCeEEEEe
Q psy4235 120 EPQILFCDEPTTGL--DSYSANNVV-NLLKQLACESRIVICAIHQPTS-------GVFEKFDTVSLLA 177 (197)
Q Consensus 120 ~p~llllDEPts~L--D~~~~~~i~-~~l~~l~~~~~~iii~th~~~~-------~~~~~~d~v~~l~ 177 (197)
+|+++++|.|+.-+ ++...+++. .+.+.+++.+.|+|+++|.... .+..+||.|+.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 34555666554321 232333444 3444455668999999995321 2456789888876
No 471
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.55 E-value=1.9e-06 Score=80.43 Aligned_cols=48 Identities=25% Similarity=0.240 Sum_probs=43.3
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235 116 QLLTEPQILFCDEPTTGLD-SYSANNVVNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 116 al~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~~~~~iii~th~~~ 163 (197)
.+..+|.++++|||...|| +...+.+.+.++.+++.+..++++||++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3457899999999999999 88899999999999988999999999874
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=3e-07 Score=88.82 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=26.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC 32 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~ 32 (197)
+|++|+|||||++++.+.+....+|.+++++.
T Consensus 213 ~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 213 WGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred EcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 59999999999999977665456899988753
No 473
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.49 E-value=6.3e-08 Score=74.41 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-cc-ceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-MS-RISGYVAQQDFLIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-~~-~~~~~v~q~~~~~~~ltv~e~l~~~~ 66 (197)
+|+||||||||+++|++++. + +.++|.++.... .+ ...++.+|+...++..++..++.+..
T Consensus 9 ~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 9 MGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred ECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 59999999999999999877 3 578888774321 11 23577777766566677777776644
No 474
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.48 E-value=2.8e-06 Score=65.49 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCc-ccccccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 82 TITRVMENLGIN-HRRQVQISGLSGGQRKRLA--LAVQLLT-EPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 82 ~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~--ia~al~~-~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.+.++++..++. -..-.++..+|+|++|++. +++.+-. ++++ .|+|++|....+++++.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 445566666664 3345567789999999877 5555543 3444 399999999999999999887654
No 475
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.47 E-value=7.6e-06 Score=65.71 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=32.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCC
Q psy4235 119 TEPQILFCDEPTTGLDSYSANNVV-NLLKQLAC-ESRIVICAIHQP 162 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~-~~~~iii~th~~ 162 (197)
.+..++|+||+..|=++.....+. .+++.+.+ .+..+|++||..
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH 166 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence 356799999999999999888764 44555666 478889999986
No 476
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.44 E-value=6.9e-08 Score=73.23 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=43.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cc-cceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VM-SRISGYVAQQDFLIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~ 66 (197)
+|+||||||||+++|++.+ |.+.++|..+... .. +...|+.+|+....+.+++.++..+..
T Consensus 1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 63 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAM 63 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence 6999999999999998765 4577887544221 11 233578888866667778888887754
No 477
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.43 E-value=3.6e-08 Score=74.45 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH--HHHHhC-CCEEEEEecCCcchHHhhcCeE
Q psy4235 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL--KQLACE-SRIVICAIHQPTSGVFEKFDTV 173 (197)
Q Consensus 104 SgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l--~~l~~~-~~~iii~th~~~~~~~~~~d~v 173 (197)
+-+++++..+++++...|-++++ +..|......+.... ...... ...+.+++++. ..+.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~p~ivv~----NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gl~~l~~~l 172 (176)
T cd01881 105 ELKLYDLETILGLLTAKPVIYVL----NKIDLDDAEELEEELVRELALEEGAEVVPISAKTE-EGLDELIRAI 172 (176)
T ss_pred HHHHhhhhhHHHHHhhCCeEEEE----EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhh-cCHHHHHHHH
Confidence 34455667778888899999999 888876666655541 111122 33455555543 3455555443
No 478
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.41 E-value=2.3e-06 Score=74.50 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=47.6
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 127 DEP--TTGLDSYSANNVVNLLKQLACESR-------IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 127 DEP--ts~LD~~~~~~i~~~l~~l~~~~~-------~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
.|| +.|.||.....+.+++.+....++ ||++.+||.. ..++|++..+.+ |.++.+....+
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~d-G~ivLsr~la~ 345 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILD-GHIVLSRALAQ 345 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccc-eEEEEecchhh
Confidence 565 469999999999999999876666 7777888763 568899999987 89888766654
No 479
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.40 E-value=8.1e-07 Score=64.25 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCC
Q psy4235 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-----ESRIVICAIHQP 162 (197)
Q Consensus 108 ~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~~~iii~th~~ 162 (197)
.+......+...++.++++||.-.. ++.....+.+.+..... .+..+|++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4555666677789999999998765 66677788888888753 356777887754
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.36 E-value=6.4e-07 Score=69.31 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcc-hHHhhcCeEEEEeC
Q psy4235 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS-GVFEKFDTVSLLAH 178 (197)
Q Consensus 106 Gq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~-~~~~~~d~v~~l~~ 178 (197)
|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+...++.++++.+|...+ .+...||.++++..
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 78899999999999999988877 7899999999999998886556788888887631 25678999999875
No 481
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.32 E-value=4.4e-07 Score=78.57 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=50.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCce---eEEEECCeeCCc--------c-cccceEEEEecCCCCCCCCCHHHHHHHHHHc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR--------T-VMSRISGYVAQQDFLIEELTVLEHLQFMAKL 68 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~---G~i~~~g~~~~~--------~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~ 68 (197)
+|+||||||||+++|+|+.. ++. |.|-.++.++.. . ..+..+++++|+...+..+++.+++.+.+..
T Consensus 161 ~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 161 MAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATY 239 (434)
T ss_pred ECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence 59999999999999999887 454 444445544421 1 1234689999999999999999998876654
No 482
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.32 E-value=3.9e-07 Score=79.32 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=28.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISR 36 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~ 36 (197)
+|||||||||||+ +|+.. |++| +|.++|.++..
T Consensus 38 ~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 38 CGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSFS 71 (504)
T ss_pred ECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECCC
Confidence 6999999999999 67777 5666 89999999854
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=98.29 E-value=7.5e-07 Score=75.75 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=46.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
+|+||+|||||++.|+|... +..|+|.+++.........+.+.+++|...++.. ++..++.+
T Consensus 201 vG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 201 LGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred ECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 59999999999999999988 7999999987543222234567899988776654 45555443
No 484
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.27 E-value=6.6e-07 Score=71.44 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=42.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeE----EEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGE----ILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL 68 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~----i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~ 68 (197)
.||||||||||+++|++.++ +.+|. |.+++...... .....+++++.. .+..+++.+...+...+
T Consensus 39 ~G~~GsGKTTl~~~L~~~l~-~~~g~~~v~i~~D~~~~~~~-~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 39 AGPPGAGKSTLAEFLEALLQ-QDGELPAIQVPMDGFHLDNA-VLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred ECCCCCCHHHHHHHHHHHhh-hccCCceEEEecccccCCHH-HHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 49999999999999999998 67887 55554333221 122346766533 34566777776665443
No 485
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.25 E-value=1.7e-06 Score=73.61 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=56.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-C-ceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc-cc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-L-VQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR-TT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~-~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-~~ 75 (197)
.||+||||||++++|++.+.+ + ..+.|.....++.- .......+++.|...--...+..+.+.-..+..+... ..
T Consensus 140 ~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~i~vG 219 (358)
T TIGR02524 140 TGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPHAILVG 219 (358)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCCEEeee
Confidence 499999999999999987741 1 23466555555431 1122334778886431111244444443333322110 00
Q ss_pred HHHHHHHHHHHHHHc-------------CCcccccccCCCCCHHHHHHH
Q psy4235 76 WLELNKTITRVMENL-------------GINHRRQVQISGLSGGQRKRL 111 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~-------------~l~~~~~~~~~~LSgGq~qrv 111 (197)
.....+.+..+++.. +..+...+....+|+||+--+
T Consensus 220 EiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 220 EARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred eeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 111223344454441 122334455667888887543
No 486
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.23 E-value=9.8e-07 Score=68.17 Aligned_cols=45 Identities=36% Similarity=0.503 Sum_probs=32.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---ccceEEEEecC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---MSRISGYVAQQ 49 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~ 49 (197)
+||||||||||+++|++... + .+.+.+..+.... ....+++++|+
T Consensus 8 ~G~sGsGKsTl~~~l~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQREQ-T---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred ECCCCCCHHHHHHHHhccCC-C---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 59999999999999998765 3 4777777765421 22446777775
No 487
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.22 E-value=6.9e-07 Score=73.78 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=45.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~ 69 (197)
.||||||||||+++|.+++.. +.+|+|.+.+.+--. ....+..+++ |...+++.+++.+.+.+...+.
T Consensus 68 aG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 68 AGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 499999999999999988752 357887765444211 1112234543 6666778888888887765443
No 488
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.20 E-value=1.8e-06 Score=71.33 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=45.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCcc--ccc-ceEEEEecCCCC---C-CCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRT--VMS-RISGYVAQQDFL---I-EELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~--~~~-~~~~~v~q~~~~---~-~~ltv~e~l~~~~ 66 (197)
+|+||+|||||+|.|.|... +..|+|.. .|...+.. ... ...+++.+.|.+ . ..++..|...++.
T Consensus 167 ~G~sg~GKSTlin~l~~~~~-~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f~ 241 (287)
T cd01854 167 VGQSGVGKSTLINALLPDLD-LATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYFP 241 (287)
T ss_pred ECCCCCCHHHHHHHHhchhh-ccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHhH
Confidence 59999999999999999887 68898875 34333321 111 125789998876 3 4677777766653
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.20 E-value=9.4e-07 Score=73.99 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---------cccceEEEEecCCCCCCCCCHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---------VMSRISGYVAQQDFLIEELTVLEHLQFM 65 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---------~~~~~~~~v~q~~~~~~~ltv~e~l~~~ 65 (197)
+|||||||||++..|++.+. +..++|.+.+.|..+. ..+..+.+++|.....|..++.+++...
T Consensus 120 vGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 120 VGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred ECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999887 5778999888776321 1123478888865555655667776654
No 490
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.16 E-value=3.3e-06 Score=73.42 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECC---eeCCc---ccc---cceEEEE-----ecCCC--CCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISR---TVM---SRISGYV-----AQQDF--LIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g---~~~~~---~~~---~~~~~~v-----~q~~~--~~~~ltv~e~l~~ 64 (197)
+|+||+|||||+++|++..+..+.|.|.+.| .++.. ..+ ....+++ +|++. +.+.+ +...++.
T Consensus 170 ~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~-va~~IAE 248 (442)
T PRK06315 170 FAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAY-VGTAIAE 248 (442)
T ss_pred ECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHH-HHHHHHH
Confidence 5999999999999999987423457777744 44421 111 1223445 77653 33433 4444444
Q ss_pred HHHccCCccccHHHHHHHHHHHHHHcCCc-----ccccccCCCCC
Q psy4235 65 MAKLTMDRRTTWLELNKTITRVMENLGIN-----HRRQVQISGLS 104 (197)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LS 104 (197)
.++.+............++.++++.+++. .....+|..||
T Consensus 249 ~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 249 YFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred HHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 33322211112234556788888888883 34455555554
No 491
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.15 E-value=1.7e-06 Score=77.26 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=47.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFM 65 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~ 65 (197)
.||||||||||++.|++.++ ..|.|.+||.... .+.+.+.+|++..++..++.++|...
T Consensus 71 aGpSGSGKTTLAk~LaglLp--~vgvIsmDdy~~~----~~~i~~nfD~P~a~D~d~L~enL~~L 129 (656)
T PLN02318 71 AGPSGAGKTVFTEKVLNFMP--SIAVISMDNYNDS----SRIIDGNFDDPRLTDYDTLLDNIHDL 129 (656)
T ss_pred ECCCCCcHHHHHHHHHhhCC--CcEEEEEcceecc----hhhhCccCCChhhcchhHHHHHHHHH
Confidence 49999999999999999864 6899999987521 23356788888888878898988653
No 492
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.13 E-value=2e-06 Score=80.48 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=35.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEecCCcchHHhhcC
Q psy4235 118 LTEPQILFCDEPTTGLDSYSANNVVN-LLKQLAC-ESRIVICAIHQPTSGVFEKFD 171 (197)
Q Consensus 118 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~-~~~~iii~th~~~~~~~~~~d 171 (197)
+.++.++|+||+-.|-|+.....+.. ++..+.+ .+..++++||.. ++..+++
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~--eL~~l~~ 722 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYF--ELTALEE 722 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCch--HHHHHhh
Confidence 45789999999977777766666443 3344454 577899999975 3445543
No 493
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.13 E-value=7.3e-07 Score=70.06 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+||||||||||++.|+++++
T Consensus 12 ~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 12 GGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred ECCCCCCHHHHHHHHHHHhc
Confidence 59999999999999999876
No 494
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=1.4e-05 Score=69.91 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=49.2
Q ss_pred hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEE-EeCCcEEEEecChh
Q psy4235 119 TEPQILFCDEPTTGLDSY-SANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL-LAHGGLLAYHGQVS 189 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~-~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~-l~~gg~i~~~g~~~ 189 (197)
.+|++|++|||...+|.. .+..++..+..+...++.+|+++++....+..+.+++.- +.. |.++...+|+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~-gl~v~i~~pd 264 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM-GLVAKLEPPD 264 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc-CceEeeCCCC
Confidence 379999999999988765 457899999998877777888774444456666666542 433 6665555554
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.10 E-value=1e-05 Score=70.89 Aligned_cols=60 Identities=18% Similarity=0.090 Sum_probs=40.9
Q ss_pred hCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcc-------hHHhhcCeEEEEeC
Q psy4235 119 TEPQILFCDEPTTGL---------DSYSANNVVNLLKQLAC-ESRIVICAIHQPTS-------GVFEKFDTVSLLAH 178 (197)
Q Consensus 119 ~~p~llllDEPts~L---------D~~~~~~i~~~l~~l~~-~~~~iii~th~~~~-------~~~~~~d~v~~l~~ 178 (197)
.+|+++++|.-.+=. +....+++...|.++++ .+.|+++++|...+ .+.+.+|.|+.|+.
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~ 245 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 245 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence 479999999875421 12334556666666654 58899999886432 15778999999875
No 496
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.09 E-value=6e-06 Score=80.00 Aligned_cols=73 Identities=27% Similarity=0.389 Sum_probs=63.0
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEE
Q psy4235 100 ISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175 (197)
Q Consensus 100 ~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~ 175 (197)
+..||||||-..+||..++ ..+|+++|||--++||..+...+.++|++.. .+.-.|++||.. ..+..+|+++-
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~--~~m~~ad~l~G 1140 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK--GTMEAADRLVG 1140 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh--HHHHHHHHHee
Confidence 4669999999999998775 6789999999999999999999999999997 456788889986 46788888543
No 497
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.08 E-value=1.8e-05 Score=67.73 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=39.4
Q ss_pred hCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHh-CCCEEEEEecCCcc-------hHHhhcCeEEEEeC
Q psy4235 119 TEPQILFCDEPTT----GLD-----SYSANNVVNLLKQLAC-ESRIVICAIHQPTS-------GVFEKFDTVSLLAH 178 (197)
Q Consensus 119 ~~p~llllDEPts----~LD-----~~~~~~i~~~l~~l~~-~~~~iii~th~~~~-------~~~~~~d~v~~l~~ 178 (197)
.+|+++++|+-.+ .+| ....+++...|.++++ .+.++|++.|-..+ .+.+.+|.++.++.
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~ 233 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 233 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEc
Confidence 4899999999632 232 2334455666666654 47788887774221 26788999998875
No 498
>PRK00098 GTPase RsgA; Reviewed
Probab=98.06 E-value=7.2e-06 Score=68.11 Aligned_cols=64 Identities=27% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCcc-cc--cceEEEEecCCCCC----CCCCHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRT-VM--SRISGYVAQQDFLI----EELTVLEHLQFM 65 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~-~~--~~~~~~v~q~~~~~----~~ltv~e~l~~~ 65 (197)
+|+||+|||||+|.|+|... +..|+|.. .|...+.. .+ ....+|+.+.|.+. ..++..+...++
T Consensus 170 ~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f 243 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYF 243 (298)
T ss_pred ECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHH
Confidence 69999999999999999887 68899976 44444321 11 12247888888766 455665554443
No 499
>PRK13764 ATPase; Provisional
Probab=98.06 E-value=3.4e-05 Score=69.48 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=44.5
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------------CCcchHHhhcCeEEEEeCCcE
Q psy4235 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH---------------QPTSGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 117 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th---------------~~~~~~~~~~d~v~~l~~gg~ 181 (197)
|..+|+++++||.-.. ++ ++++..++..|..++-+.| +. ..+...+|+++++++ |+
T Consensus 321 LR~rPD~IivGEiRd~---Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~-G~ 391 (602)
T PRK13764 321 LLVRPDYTIYDEMRKT---ED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIED-GE 391 (602)
T ss_pred HhhCCCEEEECCCCCH---HH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeC-CE
Confidence 6789999999999743 22 4444455545667888888 54 357789999999998 87
Q ss_pred E--EEecC
Q psy4235 182 L--AYHGQ 187 (197)
Q Consensus 182 i--~~~g~ 187 (197)
+ +++.+
T Consensus 392 I~~v~~~~ 399 (602)
T PRK13764 392 VSKVYDLE 399 (602)
T ss_pred EEEEEeee
Confidence 7 45444
No 500
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=6.3e-06 Score=71.66 Aligned_cols=50 Identities=30% Similarity=0.331 Sum_probs=38.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECC---eeCCc-------ccccceEEEEecCCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISR-------TVMSRISGYVAQQDF 51 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g---~~~~~-------~~~~~~~~~v~q~~~ 51 (197)
+||||||||||+++|+++.. ++.|.|.+.| .++.. ..+++.++|++|.+.
T Consensus 171 ~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 171 FAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 59999999999999999888 6899998864 44431 112356899999754
Done!