Query psy4235
Match_columns 197
No_of_seqs 266 out of 2577
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 20:17:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 5.9E-55 2E-59 367.1 22.7 187 1-193 60-253 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 1.8E-54 6.3E-59 366.0 23.7 187 1-193 35-223 (381)
3 3tif_A Uncharacterized ABC tra 100.0 3.3E-54 1.1E-58 344.6 21.9 188 1-192 37-233 (235)
4 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-54 1.3E-58 351.1 22.3 187 1-193 40-233 (275)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 1.5E-54 5.1E-59 364.3 20.3 187 1-193 36-228 (359)
6 1b0u_A Histidine permease; ABC 100.0 1.1E-53 3.6E-58 346.7 22.4 187 1-193 38-242 (262)
7 2olj_A Amino acid ABC transpor 100.0 1.5E-53 5.2E-58 345.8 23.0 187 1-193 56-248 (263)
8 1z47_A CYSA, putative ABC-tran 100.0 1.6E-53 5.4E-58 358.0 23.6 187 1-193 47-235 (355)
9 1vpl_A ABC transporter, ATP-bi 100.0 3E-53 1E-57 342.8 22.8 188 1-194 47-236 (256)
10 2it1_A 362AA long hypothetical 100.0 2.5E-53 8.4E-58 357.8 22.6 187 1-193 35-223 (362)
11 1g29_1 MALK, maltose transport 100.0 3.4E-53 1.2E-57 358.4 23.2 187 1-193 35-229 (372)
12 2yyz_A Sugar ABC transporter, 100.0 1.9E-53 6.6E-58 358.1 21.5 187 1-193 35-223 (359)
13 2onk_A Molybdate/tungstate ABC 100.0 1.6E-53 5.3E-58 341.6 19.1 185 1-193 30-216 (240)
14 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-53 6.6E-58 357.8 20.0 187 1-193 37-230 (353)
15 1g6h_A High-affinity branched- 100.0 4.8E-53 1.6E-57 341.9 20.8 187 1-190 39-239 (257)
16 2pcj_A ABC transporter, lipopr 100.0 6.9E-53 2.4E-57 334.7 20.9 180 1-187 36-222 (224)
17 1v43_A Sugar-binding transport 100.0 4.1E-53 1.4E-57 357.6 20.1 187 1-193 43-231 (372)
18 3d31_A Sulfate/molybdate ABC t 100.0 4.4E-53 1.5E-57 354.8 18.8 184 1-193 32-217 (348)
19 1ji0_A ABC transporter; ATP bi 100.0 1.2E-52 4.2E-57 336.5 20.5 186 1-193 38-228 (240)
20 4g1u_C Hemin import ATP-bindin 100.0 6.3E-53 2.1E-57 342.8 18.0 185 1-193 43-237 (266)
21 2yz2_A Putative ABC transporte 100.0 4.5E-52 1.5E-56 337.8 19.3 187 1-194 39-228 (266)
22 2qi9_C Vitamin B12 import ATP- 100.0 3.1E-51 1.1E-55 329.8 17.9 181 1-193 32-222 (249)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-51 5.8E-56 336.3 15.9 189 1-192 53-251 (279)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 8.9E-51 3E-55 327.4 19.6 186 1-189 35-229 (250)
25 2ixe_A Antigen peptide transpo 100.0 1E-50 3.5E-55 330.6 17.2 188 1-193 51-245 (271)
26 2nq2_C Hypothetical ABC transp 100.0 7E-50 2.4E-54 322.7 20.6 178 1-192 37-216 (253)
27 2zu0_C Probable ATP-dependent 100.0 1.2E-49 4.1E-54 323.6 21.2 190 1-192 52-253 (267)
28 2ff7_A Alpha-hemolysin translo 100.0 7.7E-50 2.6E-54 321.4 17.6 178 1-193 41-232 (247)
29 3nh6_A ATP-binding cassette SU 100.0 7.8E-50 2.7E-54 329.9 16.8 188 1-194 86-278 (306)
30 2pjz_A Hypothetical protein ST 100.0 1.1E-48 3.8E-53 317.2 20.0 177 1-193 36-215 (263)
31 1sgw_A Putative ABC transporte 100.0 1.1E-49 3.9E-54 314.0 12.9 170 1-182 41-210 (214)
32 1mv5_A LMRA, multidrug resista 100.0 3.6E-49 1.2E-53 316.8 14.2 179 1-193 34-226 (243)
33 2ghi_A Transport protein; mult 100.0 9.8E-48 3.4E-52 311.3 19.0 177 1-193 52-242 (260)
34 3gd7_A Fusion complex of cysti 100.0 1.4E-47 4.7E-52 325.6 13.7 176 1-193 53-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.6E-46 5.4E-51 299.0 16.9 167 1-193 40-218 (229)
36 2cbz_A Multidrug resistance-as 100.0 3.2E-46 1.1E-50 298.7 16.6 173 1-193 37-217 (237)
37 3qf4_A ABC transporter, ATP-bi 100.0 3.8E-46 1.3E-50 332.2 14.5 183 1-194 375-567 (587)
38 3b60_A Lipid A export ATP-bind 100.0 1.2E-45 4.2E-50 328.8 17.4 179 1-193 375-567 (582)
39 3b5x_A Lipid A export ATP-bind 100.0 1.8E-45 6.2E-50 327.7 17.5 179 1-193 375-567 (582)
40 4a82_A Cystic fibrosis transme 100.0 9E-46 3.1E-50 329.3 15.3 178 1-193 373-564 (578)
41 2yl4_A ATP-binding cassette SU 100.0 2.7E-45 9.1E-50 327.3 17.1 181 1-193 376-570 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 1.8E-45 6.3E-50 328.5 14.1 178 1-193 387-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 2.1E-44 7.3E-49 295.7 16.0 166 1-193 70-247 (290)
44 3bk7_A ABC transporter ATP-bin 100.0 3.2E-42 1.1E-46 307.3 16.6 174 1-193 388-563 (607)
45 1yqt_A RNAse L inhibitor; ATP- 100.0 2.6E-42 9E-47 304.5 14.5 174 1-193 318-493 (538)
46 4f4c_A Multidrug resistance pr 100.0 1.2E-42 3.9E-47 332.4 12.3 181 1-194 1111-1305(1321)
47 3ozx_A RNAse L inhibitor; ATP 100.0 1E-41 3.5E-46 300.5 15.8 173 1-190 300-474 (538)
48 4f4c_A Multidrug resistance pr 100.0 9E-42 3.1E-46 326.3 16.3 178 1-193 450-641 (1321)
49 3g5u_A MCG1178, multidrug resi 100.0 6.9E-42 2.4E-46 326.4 15.1 182 1-193 422-613 (1284)
50 3g5u_A MCG1178, multidrug resi 100.0 4.9E-41 1.7E-45 320.6 17.0 180 1-193 1065-1258(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 5.5E-41 1.9E-45 299.1 15.9 175 1-194 384-560 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 7.7E-40 2.6E-44 288.8 10.4 164 1-178 53-233 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 5.5E-40 1.9E-44 292.9 8.8 164 1-178 123-303 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 7.7E-39 2.6E-43 289.0 13.9 187 1-193 50-298 (670)
55 3ozx_A RNAse L inhibitor; ATP 100.0 9.4E-39 3.2E-43 281.6 10.5 162 1-178 31-212 (538)
56 2iw3_A Elongation factor 3A; a 100.0 1E-36 3.5E-41 281.5 17.2 166 1-193 467-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 8.8E-37 3E-41 275.6 16.0 127 55-193 504-640 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.6E-37 1.9E-41 273.3 12.0 166 1-178 109-296 (608)
59 2iw3_A Elongation factor 3A; a 100.0 9.8E-37 3.3E-41 281.7 11.0 173 1-187 705-981 (986)
60 3pih_A Uvrabc system protein A 100.0 7.1E-34 2.4E-38 262.0 16.1 128 55-193 766-902 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 8.6E-34 2.9E-38 260.7 15.3 128 55-193 806-942 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.2E-33 4.1E-38 258.6 14.0 111 81-193 708-827 (842)
63 2ygr_A Uvrabc system protein A 100.0 3.9E-33 1.3E-37 257.1 13.8 127 56-193 825-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.7E-36 1.3E-40 260.6 -6.1 170 1-191 144-336 (460)
65 4aby_A DNA repair protein RECN 100.0 1.9E-32 6.5E-37 234.0 14.7 79 103-185 296-380 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 1.2E-29 4.1E-34 214.2 15.5 85 97-184 274-364 (365)
67 1e69_A Chromosome segregation 100.0 5.7E-30 1.9E-34 212.7 12.7 94 95-191 212-311 (322)
68 1ye8_A Protein THEP1, hypothet 100.0 5.1E-31 1.7E-35 202.0 2.0 135 1-172 6-152 (178)
69 3b85_A Phosphate starvation-in 100.0 6.4E-32 2.2E-36 211.8 -6.5 125 1-163 28-159 (208)
70 3sop_A Neuronal-specific septi 100.0 7.1E-31 2.4E-35 213.4 -5.0 143 1-162 8-150 (270)
71 1tq4_A IIGP1, interferon-induc 99.9 2.4E-30 8.3E-35 221.0 -7.7 152 1-174 75-248 (413)
72 3pih_A Uvrabc system protein A 99.9 5.8E-27 2E-31 216.2 11.1 162 12-193 385-560 (916)
73 1znw_A Guanylate kinase, GMP k 99.9 6.8E-31 2.3E-35 205.2 -17.0 164 1-178 26-203 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 7.8E-28 2.7E-32 198.3 -0.4 156 1-179 106-282 (302)
75 4gp7_A Metallophosphoesterase; 99.9 2.7E-27 9.2E-32 179.8 0.4 73 90-163 72-160 (171)
76 2r6f_A Excinuclease ABC subuni 99.9 1.4E-24 4.8E-29 199.8 14.1 138 53-193 449-600 (972)
77 2og2_A Putative signal recogni 99.9 9.5E-27 3.2E-31 195.7 -0.7 155 1-178 163-338 (359)
78 3qkt_A DNA double-strand break 99.9 3.3E-24 1.1E-28 179.2 14.5 81 96-178 242-328 (339)
79 2ygr_A Uvrabc system protein A 99.9 2.8E-24 9.6E-29 198.4 11.9 140 51-193 464-617 (993)
80 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.7E-23 5.7E-28 155.6 11.7 80 96-177 51-136 (148)
81 3aez_A Pantothenate kinase; tr 99.9 3.1E-26 1.1E-30 189.6 -8.4 149 1-178 96-244 (312)
82 2pt7_A CAG-ALFA; ATPase, prote 99.9 4.3E-24 1.5E-28 178.0 4.0 113 1-179 177-290 (330)
83 2v9p_A Replication protein E1; 99.9 6.5E-27 2.2E-31 192.7 -13.0 135 1-194 132-267 (305)
84 1tf7_A KAIC; homohexamer, hexa 99.9 5.8E-23 2E-27 180.7 10.6 144 1-181 287-444 (525)
85 2vf7_A UVRA2, excinuclease ABC 99.9 1.1E-22 3.9E-27 186.3 12.8 112 79-193 356-475 (842)
86 2dpy_A FLII, flagellum-specifi 99.9 2.5E-25 8.6E-30 191.7 -4.5 160 1-192 163-343 (438)
87 1cr0_A DNA primase/helicase; R 99.9 3.1E-23 1.1E-27 169.7 5.3 165 1-181 41-236 (296)
88 1rj9_A FTSY, signal recognitio 99.9 1.6E-23 5.5E-28 172.7 -1.1 141 1-162 108-258 (304)
89 2ehv_A Hypothetical protein PH 99.9 2.5E-23 8.5E-28 165.3 -0.8 153 1-178 36-207 (251)
90 1z6g_A Guanylate kinase; struc 99.9 9.7E-27 3.3E-31 183.3 -20.3 159 1-174 29-205 (218)
91 1tf7_A KAIC; homohexamer, hexa 99.8 1.6E-24 5.6E-29 190.6 -10.6 148 1-178 45-209 (525)
92 2o8b_B DNA mismatch repair pro 99.8 2.9E-22 9.9E-27 187.3 0.2 134 1-183 795-930 (1022)
93 3asz_A Uridine kinase; cytidin 99.8 2.4E-24 8.2E-29 167.8 -12.5 136 1-162 12-161 (211)
94 3szr_A Interferon-induced GTP- 99.8 1.1E-22 3.8E-27 181.7 -4.0 158 1-189 51-233 (608)
95 4a74_A DNA repair and recombin 99.8 6.8E-22 2.3E-26 155.1 -0.2 139 1-178 31-199 (231)
96 2qnr_A Septin-2, protein NEDD5 99.8 1.9E-23 6.6E-28 172.0 -9.5 142 1-163 24-168 (301)
97 2eyu_A Twitching motility prot 99.8 4E-21 1.4E-25 155.2 4.1 115 1-177 31-146 (261)
98 2obl_A ESCN; ATPase, hydrolase 99.8 7.6E-22 2.6E-26 165.4 -0.6 159 1-191 77-253 (347)
99 3kta_B Chromosome segregation 99.8 2.2E-19 7.6E-24 136.5 12.5 79 96-177 58-140 (173)
100 3thx_A DNA mismatch repair pro 99.8 4.5E-20 1.5E-24 170.9 9.1 87 101-190 720-810 (934)
101 2jeo_A Uridine-cytidine kinase 99.8 4.8E-22 1.6E-26 158.8 -3.8 136 1-163 31-166 (245)
102 2i3b_A HCR-ntpase, human cance 99.8 1.2E-22 4.2E-27 156.7 -8.6 150 1-184 7-167 (189)
103 1ewq_A DNA mismatch repair pro 99.8 6.9E-21 2.4E-25 173.5 0.2 117 1-170 582-704 (765)
104 4ad8_A DNA repair protein RECN 99.8 3.3E-19 1.1E-23 156.5 9.4 78 98-178 392-472 (517)
105 3thx_B DNA mismatch repair pro 99.8 5.1E-20 1.7E-24 170.2 3.9 75 95-172 728-804 (918)
106 1nlf_A Regulatory protein REPA 99.8 5.5E-19 1.9E-23 143.4 8.0 141 1-163 36-182 (279)
107 1pzn_A RAD51, DNA repair and r 99.8 1.3E-20 4.4E-25 158.1 -2.0 125 1-163 137-287 (349)
108 3jvv_A Twitching mobility prot 99.8 1.6E-19 5.4E-24 151.8 3.9 116 1-178 129-245 (356)
109 2o5v_A DNA replication and rep 99.8 7.5E-19 2.5E-23 147.7 7.7 86 97-191 259-354 (359)
110 2w0m_A SSO2452; RECA, SSPF, un 99.7 4.5E-19 1.5E-23 138.9 4.1 148 1-178 29-191 (235)
111 1wb9_A DNA mismatch repair pro 99.7 3.6E-19 1.2E-23 162.9 1.5 134 1-183 613-748 (800)
112 1nij_A Hypothetical protein YJ 99.7 2.9E-22 9.8E-27 166.1 -18.6 156 1-171 10-197 (318)
113 1s96_A Guanylate kinase, GMP k 99.7 9.1E-20 3.1E-24 143.6 -3.5 135 1-194 22-161 (219)
114 2bbw_A Adenylate kinase 4, AK4 99.7 5.4E-21 1.8E-25 152.6 -11.0 140 1-151 33-199 (246)
115 3auy_A DNA double-strand break 99.7 5.8E-17 2E-21 136.8 13.1 80 98-180 276-362 (371)
116 2bdt_A BH3686; alpha-beta prot 99.7 1.5E-22 5.2E-27 155.2 -21.8 166 1-191 8-182 (189)
117 1w1w_A Structural maintenance 99.7 7.6E-17 2.6E-21 138.4 10.2 79 98-178 329-411 (430)
118 1pui_A ENGB, probable GTP-bind 99.7 1.7E-19 5.8E-24 139.5 -6.0 73 82-154 128-202 (210)
119 1zp6_A Hypothetical protein AT 99.7 4E-20 1.4E-24 141.5 -9.9 152 1-173 15-169 (191)
120 2qag_C Septin-7; cell cycle, c 99.7 2.1E-18 7.3E-23 147.6 -1.1 136 1-163 37-178 (418)
121 2cvh_A DNA repair and recombin 99.7 2.5E-16 8.5E-21 122.5 8.7 77 102-178 84-184 (220)
122 2rcn_A Probable GTPase ENGC; Y 99.7 3.7E-17 1.3E-21 137.1 3.7 107 1-117 221-328 (358)
123 3e70_C DPA, signal recognition 99.6 6.2E-18 2.1E-22 140.6 -1.6 152 1-179 135-304 (328)
124 1lw7_A Transcriptional regulat 99.6 1.2E-19 4.2E-24 152.8 -13.0 146 1-177 176-342 (365)
125 2ewv_A Twitching motility prot 99.6 5.7E-17 2E-21 137.0 3.2 112 1-174 142-254 (372)
126 1sxj_E Activator 1 40 kDa subu 99.6 5.5E-16 1.9E-20 129.0 6.9 142 1-173 42-185 (354)
127 2f1r_A Molybdopterin-guanine d 99.6 1.6E-18 5.5E-23 131.6 -9.6 131 1-153 8-164 (171)
128 2yv5_A YJEQ protein; hydrolase 99.6 4.7E-17 1.6E-21 133.8 -3.3 110 1-115 171-300 (302)
129 3ec2_A DNA replication protein 99.6 2.8E-15 9.7E-20 113.6 5.8 48 118-165 98-146 (180)
130 1n0w_A DNA repair protein RAD5 99.6 5.6E-15 1.9E-19 116.4 7.6 60 119-178 118-208 (243)
131 2qag_B Septin-6, protein NEDD5 99.6 2.9E-16 9.8E-21 134.3 -0.1 150 1-162 48-219 (427)
132 2yhs_A FTSY, cell division pro 99.5 4.3E-16 1.5E-20 135.1 -1.0 138 1-161 299-448 (503)
133 2gza_A Type IV secretion syste 99.5 6.1E-15 2.1E-19 124.1 6.0 119 1-178 181-301 (361)
134 2kjq_A DNAA-related protein; s 99.5 5.2E-15 1.8E-19 109.6 4.6 45 118-163 81-126 (149)
135 1p9r_A General secretion pathw 99.5 2.1E-17 7.2E-22 141.5 -10.2 120 1-126 173-315 (418)
136 2qm8_A GTPase/ATPase; G protei 99.5 7.4E-17 2.5E-21 134.6 -8.5 144 1-150 61-260 (337)
137 1odf_A YGR205W, hypothetical 3 99.5 4.6E-16 1.6E-20 127.3 -3.6 119 1-136 37-168 (290)
138 1u0l_A Probable GTPase ENGC; p 99.5 1.1E-15 3.6E-20 125.6 -1.9 97 1-105 175-294 (301)
139 1udx_A The GTP-binding protein 99.5 7.6E-15 2.6E-19 125.5 0.5 60 97-161 247-307 (416)
140 2oap_1 GSPE-2, type II secreti 99.4 1.1E-16 3.9E-21 140.1 -14.5 156 1-172 266-459 (511)
141 3c8u_A Fructokinase; YP_612366 99.4 5.6E-16 1.9E-20 120.5 -9.6 110 1-130 28-140 (208)
142 1htw_A HI0065; nucleotide-bind 99.4 3.1E-14 1.1E-18 106.5 -0.5 59 1-64 39-97 (158)
143 3lda_A DNA repair protein RAD5 99.4 1.9E-12 6.4E-17 110.2 10.3 60 119-178 272-362 (400)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 4.1E-17 1.4E-21 138.5 -18.9 157 1-188 26-208 (392)
145 1in4_A RUVB, holliday junction 99.4 7.2E-15 2.5E-19 122.2 -5.3 131 1-151 57-195 (334)
146 1t9h_A YLOQ, probable GTPase E 99.4 1.5E-14 5.2E-19 119.0 -3.9 108 1-110 179-303 (307)
147 1lvg_A Guanylate kinase, GMP k 99.3 3.8E-17 1.3E-21 126.5 -20.9 57 113-178 116-173 (198)
148 2x8a_A Nuclear valosin-contain 99.3 2.1E-16 7.2E-21 128.3 -17.5 125 1-145 50-190 (274)
149 1vma_A Cell division protein F 99.2 4.5E-12 1.5E-16 104.3 4.6 99 1-148 110-211 (306)
150 1oix_A RAS-related protein RAB 99.2 4.1E-13 1.4E-17 102.6 -1.6 36 110-147 153-188 (191)
151 2px0_A Flagellar biosynthesis 99.1 3.6E-11 1.2E-15 98.4 5.0 132 1-183 111-246 (296)
152 1sq5_A Pantothenate kinase; P- 99.1 1.8E-12 6E-17 106.7 -3.2 109 1-134 86-198 (308)
153 1ls1_A Signal recognition part 99.1 2.3E-10 7.8E-15 93.6 9.0 114 1-158 104-218 (295)
154 2dr3_A UPF0273 protein PH0284; 99.1 6.7E-12 2.3E-16 98.8 -0.2 60 119-178 127-196 (247)
155 2zr9_A Protein RECA, recombina 99.1 1.7E-10 5.7E-15 96.5 8.1 74 109-183 126-233 (349)
156 2ius_A DNA translocase FTSK; n 99.1 2.3E-12 7.8E-17 112.6 -3.6 152 1-163 173-343 (512)
157 2r6a_A DNAB helicase, replicat 99.1 1.5E-10 5.2E-15 99.9 6.7 159 1-178 209-398 (454)
158 2f9l_A RAB11B, member RAS onco 99.0 1.1E-11 3.9E-16 94.8 -3.3 37 111-149 130-166 (199)
159 3k1j_A LON protease, ATP-depen 99.0 1.7E-11 5.7E-16 109.4 -3.5 140 1-148 66-228 (604)
160 1qhl_A Protein (cell division 99.0 7.1E-11 2.4E-15 93.2 0.1 48 1-49 33-91 (227)
161 1iy2_A ATP-dependent metallopr 98.9 2.8E-13 9.7E-18 109.5 -14.5 111 1-129 79-194 (278)
162 1ixz_A ATP-dependent metallopr 98.9 3E-13 1E-17 107.8 -14.8 112 1-130 55-171 (254)
163 2qtf_A Protein HFLX, GTP-bindi 98.9 2.8E-09 9.6E-14 89.6 8.2 138 1-150 185-353 (364)
164 3tr0_A Guanylate kinase, GMP k 98.8 1.1E-10 3.7E-15 89.5 -3.5 58 1-63 13-73 (205)
165 3hr8_A Protein RECA; alpha and 98.7 1.2E-09 4.1E-14 91.5 0.3 59 1-60 67-126 (356)
166 3euj_A Chromosome partition pr 98.7 9.8E-10 3.4E-14 95.3 -0.6 71 100-177 377-464 (483)
167 2e87_A Hypothetical protein PH 98.7 1.8E-08 6.3E-13 84.2 6.8 65 97-163 226-293 (357)
168 2ce7_A Cell division protein F 98.7 6.6E-08 2.3E-12 83.9 8.5 58 105-162 93-164 (476)
169 4eun_A Thermoresistant glucoki 98.6 7.9E-10 2.7E-14 84.9 -4.1 59 1-64 35-95 (200)
170 2xau_A PRE-mRNA-splicing facto 98.6 7.3E-08 2.5E-12 88.2 7.2 75 97-172 185-261 (773)
171 1jjv_A Dephospho-COA kinase; P 98.6 4.3E-09 1.5E-13 80.9 -1.3 71 104-178 61-132 (206)
172 1fnn_A CDC6P, cell division co 98.5 5E-07 1.7E-11 75.2 8.8 43 119-162 124-169 (389)
173 3cr8_A Sulfate adenylyltranfer 98.4 2.5E-09 8.4E-14 94.4 -6.2 33 1-34 375-409 (552)
174 4e22_A Cytidylate kinase; P-lo 98.4 1.6E-08 5.3E-13 80.6 -2.4 49 1-50 33-96 (252)
175 2z4s_A Chromosomal replication 98.4 2E-07 6.8E-12 80.1 4.0 45 119-163 193-238 (440)
176 3a00_A Guanylate kinase, GMP k 98.4 4.6E-08 1.6E-12 74.2 -0.1 25 1-26 7-31 (186)
177 1svm_A Large T antigen; AAA+ f 98.3 5E-10 1.7E-14 94.5 -12.7 120 1-131 175-312 (377)
178 2dhr_A FTSH; AAA+ protein, hex 98.3 8.9E-10 3E-14 96.1 -11.6 113 1-131 70-187 (499)
179 4a1f_A DNAB helicase, replicat 98.3 1.4E-06 4.8E-11 72.4 6.9 54 101-159 108-163 (338)
180 3kta_A Chromosome segregation 98.2 1.7E-07 5.9E-12 70.3 0.8 24 1-25 32-55 (182)
181 3kl4_A SRP54, signal recogniti 98.2 4.3E-06 1.5E-10 71.6 8.4 32 1-33 103-134 (433)
182 2j41_A Guanylate kinase; GMP, 98.2 2.8E-07 9.6E-12 70.3 0.9 24 1-25 12-35 (207)
183 3b9p_A CG5977-PA, isoform A; A 98.2 1.4E-05 4.9E-10 64.3 10.5 72 105-176 98-186 (297)
184 1kgd_A CASK, peripheral plasma 98.2 3.9E-07 1.3E-11 68.7 1.0 30 1-30 11-40 (180)
185 1zu4_A FTSY; GTPase, signal re 98.1 4.9E-07 1.7E-11 74.6 1.0 64 1-65 111-187 (320)
186 3t34_A Dynamin-related protein 98.1 1E-05 3.6E-10 67.4 9.1 58 102-160 154-212 (360)
187 3lnc_A Guanylate kinase, GMP k 98.1 3E-07 1E-11 71.9 -0.4 74 117-192 145-223 (231)
188 4ad8_A DNA repair protein RECN 98.1 3.1E-07 1.1E-11 80.3 -0.8 139 1-155 66-246 (517)
189 1knq_A Gluconate kinase; ALFA/ 98.1 7.1E-08 2.4E-12 72.0 -4.3 30 1-35 14-43 (175)
190 2dy1_A Elongation factor G; tr 98.1 1.1E-06 3.9E-11 79.1 2.2 118 1-163 15-137 (665)
191 1ega_A Protein (GTP-binding pr 98.0 2.3E-06 7.8E-11 69.9 2.7 64 103-174 101-170 (301)
192 3uie_A Adenylyl-sulfate kinase 98.0 3.3E-07 1.1E-11 70.1 -2.2 33 1-35 31-65 (200)
193 2vp4_A Deoxynucleoside kinase; 98.0 9.9E-07 3.4E-11 69.0 0.1 29 1-34 26-54 (230)
194 1cke_A CK, MSSA, protein (cyti 98.0 1.9E-07 6.6E-12 72.4 -4.0 49 1-50 11-74 (227)
195 1rz3_A Hypothetical protein rb 97.9 8.9E-07 3E-11 67.8 -1.1 33 1-34 28-60 (201)
196 2w58_A DNAI, primosome compone 97.9 1.6E-05 5.6E-10 60.3 5.7 50 119-168 114-165 (202)
197 1mky_A Probable GTP-binding pr 97.9 8.2E-06 2.8E-10 69.9 4.4 142 1-149 186-353 (439)
198 3lxx_A GTPase IMAP family memb 97.9 8.6E-05 3E-09 57.9 9.6 43 119-161 111-155 (239)
199 1l8q_A Chromosomal replication 97.8 3.1E-05 1.1E-09 63.2 7.0 44 119-162 97-141 (324)
200 2qby_A CDC6 homolog 1, cell di 97.8 2.6E-06 8.9E-11 70.5 0.3 20 1-20 51-70 (386)
201 3tqc_A Pantothenate kinase; bi 97.8 3.6E-06 1.2E-10 69.4 1.0 20 1-20 98-117 (321)
202 3ney_A 55 kDa erythrocyte memb 97.8 4.7E-06 1.6E-10 64.1 1.0 20 1-20 25-44 (197)
203 3llm_A ATP-dependent RNA helic 97.8 8.6E-06 2.9E-10 63.7 2.4 67 103-171 161-228 (235)
204 3bh0_A DNAB-like replicative h 97.8 6.2E-05 2.1E-09 61.7 7.5 52 103-159 134-188 (315)
205 3tau_A Guanylate kinase, GMP k 97.8 7.5E-06 2.6E-10 63.0 1.8 20 1-20 14-33 (208)
206 1kag_A SKI, shikimate kinase I 97.7 7.6E-06 2.6E-10 60.6 1.6 20 1-20 10-29 (173)
207 1v5w_A DMC1, meiotic recombina 97.7 0.00026 9E-09 58.6 10.5 70 109-178 204-308 (343)
208 3bos_A Putative DNA replicatio 97.7 3.1E-05 1.1E-09 59.7 4.4 44 119-162 103-148 (242)
209 2www_A Methylmalonic aciduria 97.6 7.7E-06 2.6E-10 68.1 -0.3 33 1-34 80-112 (349)
210 2z43_A DNA repair and recombin 97.6 0.00032 1.1E-08 57.6 9.1 71 108-178 188-289 (324)
211 1sxj_D Activator 1 41 kDa subu 97.6 5E-07 1.7E-11 74.4 -8.0 42 120-163 133-174 (353)
212 1ypw_A Transitional endoplasmi 97.6 9E-05 3.1E-09 68.2 6.0 20 1-20 244-263 (806)
213 2qt1_A Nicotinamide riboside k 97.5 3.9E-05 1.3E-09 58.5 2.8 19 1-19 27-45 (207)
214 3cf0_A Transitional endoplasmi 97.5 0.00018 6.2E-09 58.3 6.8 19 1-19 55-73 (301)
215 1w1w_A Structural maintenance 97.5 2.6E-05 8.8E-10 66.5 1.6 23 1-24 32-54 (430)
216 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 3.2E-05 1.1E-09 56.5 1.9 16 1-16 29-44 (149)
217 1u94_A RECA protein, recombina 97.5 0.0005 1.7E-08 57.3 9.1 70 109-178 128-231 (356)
218 2qag_A Septin-2, protein NEDD5 97.5 1.6E-05 5.5E-10 66.5 -0.1 30 1-31 43-72 (361)
219 2q6t_A DNAB replication FORK h 97.4 0.0029 9.8E-08 54.1 13.6 76 101-178 291-397 (444)
220 2wjg_A FEOB, ferrous iron tran 97.4 7.2E-05 2.5E-09 55.6 3.1 18 1-18 13-30 (188)
221 2wji_A Ferrous iron transport 97.4 0.00012 4.1E-09 53.6 4.0 19 1-19 9-27 (165)
222 3m6a_A ATP-dependent protease 97.4 4.5E-05 1.6E-09 67.1 1.7 32 1-33 114-145 (543)
223 2gj8_A MNME, tRNA modification 97.3 0.00015 5.2E-09 53.6 3.5 19 1-19 10-28 (172)
224 3h4m_A Proteasome-activating n 97.3 0.0012 4.1E-08 52.5 9.0 47 115-161 105-165 (285)
225 2if2_A Dephospho-COA kinase; a 97.3 6E-05 2E-09 57.3 1.2 17 1-17 7-23 (204)
226 2o5v_A DNA replication and rep 97.3 6.4E-05 2.2E-09 62.8 1.4 17 1-17 32-48 (359)
227 2pez_A Bifunctional 3'-phospho 97.3 3.4E-05 1.2E-09 57.5 -0.3 32 1-34 11-44 (179)
228 2v1u_A Cell division control p 97.3 0.00026 8.8E-09 58.4 5.0 19 1-19 50-68 (387)
229 1m7g_A Adenylylsulfate kinase; 97.3 4E-05 1.4E-09 58.8 0.0 33 1-34 31-65 (211)
230 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.002 6.9E-08 50.3 9.7 19 1-19 45-63 (262)
231 3qks_A DNA double-strand break 97.2 0.00012 4E-09 56.2 1.9 16 1-16 29-44 (203)
232 2ohf_A Protein OLA1, GTP-bindi 97.2 0.0002 6.7E-09 60.6 3.2 31 1-32 28-69 (396)
233 3d8b_A Fidgetin-like protein 1 97.1 0.0034 1.1E-07 52.0 10.4 19 1-19 123-141 (357)
234 2p67_A LAO/AO transport system 97.1 5.6E-05 1.9E-09 62.6 -0.6 33 1-34 62-94 (341)
235 3t61_A Gluconokinase; PSI-biol 97.1 0.00015 5.2E-09 55.0 1.7 19 1-19 24-42 (202)
236 3euj_A Chromosome partition pr 97.1 0.0013 4.5E-08 56.9 7.6 34 1-35 35-68 (483)
237 1np6_A Molybdopterin-guanine d 97.1 0.00016 5.6E-09 54.2 1.6 33 1-33 12-46 (174)
238 2zej_A Dardarin, leucine-rich 97.1 0.00018 6.3E-09 53.5 1.9 19 1-19 8-26 (184)
239 2qor_A Guanylate kinase; phosp 97.1 0.00019 6.4E-09 54.7 1.9 20 1-20 18-37 (204)
240 2b8t_A Thymidine kinase; deoxy 97.0 0.00046 1.6E-08 53.9 3.9 53 120-177 89-150 (223)
241 3vaa_A Shikimate kinase, SK; s 97.0 0.0002 6.7E-09 54.4 1.7 19 1-19 31-49 (199)
242 2yvu_A Probable adenylyl-sulfa 97.0 0.00012 4.3E-09 54.7 0.2 26 1-27 19-44 (186)
243 1lv7_A FTSH; alpha/beta domain 96.9 0.00034 1.2E-08 55.0 2.5 30 1-33 51-80 (257)
244 3kb2_A SPBC2 prophage-derived 96.9 0.00032 1.1E-08 51.3 1.8 19 1-19 7-25 (173)
245 3nwj_A ATSK2; P loop, shikimat 96.8 0.00034 1.2E-08 55.5 1.7 20 1-20 54-73 (250)
246 1m2o_B GTP-binding protein SAR 96.8 0.00066 2.3E-08 50.8 3.2 33 1-33 29-68 (190)
247 1ex7_A Guanylate kinase; subst 96.8 0.00039 1.3E-08 52.7 1.9 18 1-18 7-24 (186)
248 2ffh_A Protein (FFH); SRP54, s 96.8 0.00021 7.3E-09 61.0 0.3 34 1-35 104-137 (425)
249 1f6b_A SAR1; gtpases, N-termin 96.8 0.00057 1.9E-08 51.6 2.7 33 1-33 31-70 (198)
250 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00029 1E-08 59.1 0.8 60 119-178 261-334 (392)
251 4eaq_A DTMP kinase, thymidylat 96.8 0.00036 1.2E-08 54.5 1.3 30 1-32 32-61 (229)
252 3ihw_A Centg3; RAS, centaurin, 96.8 0.0011 3.7E-08 49.4 3.9 33 1-33 26-66 (184)
253 2i1q_A DNA repair and recombin 96.8 0.0066 2.3E-07 49.4 8.9 69 110-178 191-290 (322)
254 1qhx_A CPT, protein (chloramph 96.7 0.00052 1.8E-08 50.7 1.9 20 1-20 9-28 (178)
255 1via_A Shikimate kinase; struc 96.7 0.00058 2E-08 50.5 1.9 19 1-19 10-28 (175)
256 3cm0_A Adenylate kinase; ATP-b 96.7 0.00058 2E-08 50.8 1.9 17 1-17 10-26 (186)
257 1j8m_F SRP54, signal recogniti 96.6 0.00019 6.6E-09 58.4 -1.2 34 1-35 104-137 (297)
258 2p5t_B PEZT; postsegregational 96.6 0.00033 1.1E-08 55.4 0.1 31 1-34 38-68 (253)
259 3lw7_A Adenylate kinase relate 96.6 0.00068 2.3E-08 49.4 1.8 15 1-15 7-21 (179)
260 2ze6_A Isopentenyl transferase 96.6 0.00065 2.2E-08 53.7 1.7 19 1-19 7-25 (253)
261 3k53_A Ferrous iron transport 96.6 0.00059 2E-08 54.3 1.3 45 129-174 144-189 (271)
262 1ly1_A Polynucleotide kinase; 96.6 0.00077 2.6E-08 49.6 1.9 17 1-17 8-24 (181)
263 2jaq_A Deoxyguanosine kinase; 96.6 0.00077 2.6E-08 50.6 1.9 19 1-19 6-24 (205)
264 1jal_A YCHF protein; nucleotid 96.5 0.0012 4E-08 55.3 2.7 31 1-31 8-48 (363)
265 1kht_A Adenylate kinase; phosp 96.5 0.0011 3.9E-08 49.1 2.2 18 1-18 9-26 (192)
266 3io5_A Recombination and repai 96.5 0.0026 8.8E-08 52.3 4.4 56 106-161 93-171 (333)
267 3co5_A Putative two-component 96.4 0.0049 1.7E-07 44.1 5.3 42 120-162 75-116 (143)
268 3auy_A DNA double-strand break 96.4 0.00087 3E-08 56.0 1.4 16 1-16 31-46 (371)
269 1gtv_A TMK, thymidylate kinase 96.4 0.0004 1.4E-08 52.8 -0.8 20 1-20 6-25 (214)
270 2ged_A SR-beta, signal recogni 96.4 0.0011 3.8E-08 49.2 1.7 19 1-19 54-72 (193)
271 3trf_A Shikimate kinase, SK; a 96.4 0.0012 4.1E-08 49.0 1.8 18 1-18 11-28 (185)
272 3iij_A Coilin-interacting nucl 96.4 0.0012 4.1E-08 48.9 1.8 17 1-17 17-33 (180)
273 1vht_A Dephospho-COA kinase; s 96.3 0.0016 5.3E-08 49.9 2.2 17 1-17 10-26 (218)
274 2rhm_A Putative kinase; P-loop 96.3 0.0011 3.7E-08 49.4 1.3 18 1-18 11-28 (193)
275 3r20_A Cytidylate kinase; stru 96.3 0.0016 5.3E-08 51.2 2.2 17 1-17 15-31 (233)
276 1q3t_A Cytidylate kinase; nucl 96.3 0.0013 4.4E-08 51.2 1.7 18 1-18 22-39 (236)
277 1z2a_A RAS-related protein RAB 96.3 0.0014 4.7E-08 47.2 1.7 18 1-18 11-28 (168)
278 1gvn_B Zeta; postsegregational 96.3 0.0014 4.9E-08 52.8 1.9 28 1-31 39-66 (287)
279 1nks_A Adenylate kinase; therm 96.3 0.0012 4.1E-08 49.0 1.3 19 1-19 7-25 (194)
280 3b1v_A Ferrous iron uptake tra 96.3 0.0015 5E-08 52.4 1.9 19 1-19 9-27 (272)
281 1y63_A LMAJ004144AAA protein; 96.2 0.0015 5.2E-08 48.8 1.8 18 1-18 16-33 (184)
282 2erx_A GTP-binding protein DI- 96.2 0.0017 5.7E-08 46.9 1.9 18 1-18 9-26 (172)
283 2dyk_A GTP-binding protein; GT 96.2 0.0016 5.3E-08 46.7 1.7 19 1-19 7-25 (161)
284 1xjc_A MOBB protein homolog; s 96.2 0.0016 5.3E-08 48.7 1.7 20 1-20 10-29 (169)
285 2nzj_A GTP-binding protein REM 96.2 0.0017 5.8E-08 47.1 1.9 19 1-19 10-28 (175)
286 1sxj_C Activator 1 40 kDa subu 96.2 0.0017 5.8E-08 53.2 2.0 42 76-117 171-215 (340)
287 3q72_A GTP-binding protein RAD 96.2 0.0013 4.3E-08 47.5 1.1 19 1-19 8-26 (166)
288 2ce2_X GTPase HRAS; signaling 96.2 0.0013 4.5E-08 47.0 1.2 18 1-18 9-26 (166)
289 1fzq_A ADP-ribosylation factor 96.2 0.0013 4.5E-08 48.7 1.1 18 1-18 22-39 (181)
290 1u8z_A RAS-related protein RAL 96.2 0.0017 5.8E-08 46.6 1.7 18 1-18 10-27 (168)
291 3q85_A GTP-binding protein REM 96.2 0.0019 6.3E-08 46.7 1.9 19 1-19 8-26 (169)
292 1kao_A RAP2A; GTP-binding prot 96.2 0.0018 6E-08 46.4 1.7 18 1-18 9-26 (167)
293 1z0j_A RAB-22, RAS-related pro 96.1 0.0018 6.1E-08 46.7 1.7 19 1-19 12-30 (170)
294 2z0h_A DTMP kinase, thymidylat 96.1 0.0021 7.3E-08 48.0 2.2 19 1-19 6-24 (197)
295 3tw8_B RAS-related protein RAB 96.1 0.0017 6E-08 47.3 1.6 18 1-18 15-32 (181)
296 1q57_A DNA primase/helicase; d 96.1 0.21 7.2E-06 43.0 15.0 69 109-178 341-441 (503)
297 1z08_A RAS-related protein RAB 96.1 0.0019 6.4E-08 46.7 1.7 18 1-18 12-29 (170)
298 1ek0_A Protein (GTP-binding pr 96.1 0.0019 6.3E-08 46.5 1.7 19 1-19 9-27 (170)
299 1ky3_A GTP-binding protein YPT 96.1 0.002 6.7E-08 47.0 1.7 19 1-19 14-32 (182)
300 1c1y_A RAS-related protein RAP 96.1 0.002 6.7E-08 46.3 1.7 18 1-18 9-26 (167)
301 2lkc_A Translation initiation 96.1 0.0021 7.3E-08 46.8 1.9 18 1-18 14-31 (178)
302 3lxw_A GTPase IMAP family memb 96.1 0.002 6.9E-08 50.6 1.8 19 1-19 27-45 (247)
303 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.002 6.9E-08 46.9 1.7 18 1-18 13-30 (177)
304 1qvr_A CLPB protein; coiled co 96.0 0.0062 2.1E-07 56.2 5.1 26 121-147 661-686 (854)
305 3fb4_A Adenylate kinase; psych 96.0 0.0022 7.6E-08 48.8 1.8 17 1-17 6-22 (216)
306 1svi_A GTP-binding protein YSX 96.0 0.0017 5.9E-08 48.2 1.1 18 1-18 29-46 (195)
307 3pqc_A Probable GTP-binding pr 96.0 0.0018 6.1E-08 47.9 1.1 19 1-19 29-47 (195)
308 1uf9_A TT1252 protein; P-loop, 96.0 0.0019 6.6E-08 48.4 1.3 18 1-18 14-31 (203)
309 1e6c_A Shikimate kinase; phosp 96.0 0.0024 8.3E-08 46.7 1.8 18 1-18 8-25 (173)
310 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0023 8E-08 47.0 1.7 19 1-19 10-28 (189)
311 2v54_A DTMP kinase, thymidylat 96.0 0.0024 8.4E-08 47.9 1.9 19 1-19 10-28 (204)
312 1tev_A UMP-CMP kinase; ploop, 96.0 0.0025 8.5E-08 47.3 1.9 17 1-17 9-25 (196)
313 1xp8_A RECA protein, recombina 96.0 0.012 4.2E-07 49.1 6.2 70 109-178 139-242 (366)
314 1g16_A RAS-related protein SEC 96.0 0.0019 6.5E-08 46.6 1.2 19 1-19 9-27 (170)
315 2plr_A DTMP kinase, probable t 96.0 0.0029 1E-07 47.6 2.2 20 1-20 10-29 (213)
316 2fn4_A P23, RAS-related protei 96.0 0.002 6.8E-08 46.9 1.2 18 1-18 15-32 (181)
317 3dm5_A SRP54, signal recogniti 95.9 0.083 2.8E-06 45.2 11.4 20 1-20 106-125 (443)
318 1r2q_A RAS-related protein RAB 95.9 0.0025 8.5E-08 45.8 1.7 18 1-18 12-29 (170)
319 1upt_A ARL1, ADP-ribosylation 95.9 0.0025 8.5E-08 46.0 1.7 18 1-18 13-30 (171)
320 3ake_A Cytidylate kinase; CMP 95.9 0.0029 9.8E-08 47.7 2.0 19 1-19 8-26 (208)
321 4fcw_A Chaperone protein CLPB; 95.9 0.0014 4.9E-08 52.6 0.3 26 122-148 121-146 (311)
322 2cxx_A Probable GTP-binding pr 95.9 0.002 6.9E-08 47.4 1.1 19 1-19 7-25 (190)
323 3dl0_A Adenylate kinase; phosp 95.9 0.0026 9E-08 48.4 1.8 17 1-17 6-22 (216)
324 3clv_A RAB5 protein, putative; 95.9 0.0026 8.8E-08 47.1 1.7 19 1-19 13-31 (208)
325 2hxs_A RAB-26, RAS-related pro 95.9 0.0029 9.9E-08 46.1 2.0 19 1-19 12-30 (178)
326 3t1o_A Gliding protein MGLA; G 95.9 0.003 1E-07 46.7 2.0 20 1-20 20-39 (198)
327 1moz_A ARL1, ADP-ribosylation 95.9 0.0014 4.7E-08 48.1 0.1 17 1-17 24-40 (183)
328 2ga8_A Hypothetical 39.9 kDa p 95.9 0.002 7E-08 53.6 1.1 19 1-19 30-48 (359)
329 3con_A GTPase NRAS; structural 95.9 0.0027 9.3E-08 46.9 1.7 18 1-18 27-44 (190)
330 2oil_A CATX-8, RAS-related pro 95.9 0.0027 9.2E-08 47.2 1.6 18 1-18 31-48 (193)
331 3bc1_A RAS-related protein RAB 95.9 0.0027 9.4E-08 46.7 1.7 18 1-18 17-34 (195)
332 1r8s_A ADP-ribosylation factor 95.9 0.0028 9.6E-08 45.5 1.7 18 1-18 6-23 (164)
333 3t5d_A Septin-7; GTP-binding p 95.9 0.0022 7.5E-08 51.1 1.2 19 1-19 14-32 (274)
334 2c95_A Adenylate kinase 1; tra 95.9 0.0025 8.4E-08 47.6 1.4 18 1-18 15-32 (196)
335 1z0f_A RAB14, member RAS oncog 95.8 0.0029 9.8E-08 46.0 1.7 19 1-19 21-39 (179)
336 1nrj_B SR-beta, signal recogni 95.8 0.0028 9.6E-08 48.1 1.7 19 1-19 18-36 (218)
337 1zak_A Adenylate kinase; ATP:A 95.8 0.0025 8.4E-08 48.9 1.3 18 1-18 11-28 (222)
338 2a9k_A RAS-related protein RAL 95.8 0.0029 1E-07 46.3 1.7 18 1-18 24-41 (187)
339 3cmw_A Protein RECA, recombina 95.8 0.018 6.3E-07 56.7 7.5 69 110-178 798-900 (1706)
340 2g6b_A RAS-related protein RAB 95.8 0.003 1E-07 46.1 1.7 19 1-19 16-34 (180)
341 3iby_A Ferrous iron transport 95.8 0.0026 8.9E-08 50.4 1.3 18 1-18 7-24 (256)
342 1wf3_A GTP-binding protein; GT 95.8 0.0032 1.1E-07 51.1 1.9 18 1-18 13-30 (301)
343 2pbr_A DTMP kinase, thymidylat 95.8 0.0039 1.3E-07 46.3 2.2 19 1-19 6-24 (195)
344 2dby_A GTP-binding protein; GD 95.8 0.003 1E-07 52.8 1.7 18 1-18 7-24 (368)
345 2pt5_A Shikimate kinase, SK; a 95.8 0.004 1.4E-07 45.3 2.2 18 1-18 6-23 (168)
346 2efe_B Small GTP-binding prote 95.8 0.0033 1.1E-07 45.9 1.7 18 1-18 18-35 (181)
347 1zd8_A GTP:AMP phosphotransfer 95.7 0.0029 9.9E-08 48.8 1.4 18 1-18 13-30 (227)
348 1ksh_A ARF-like protein 2; sma 95.7 0.0035 1.2E-07 46.2 1.8 19 1-19 24-42 (186)
349 2y8e_A RAB-protein 6, GH09086P 95.7 0.0028 9.4E-08 46.1 1.2 18 1-18 20-37 (179)
350 3cbq_A GTP-binding protein REM 95.7 0.0027 9.2E-08 47.7 1.1 18 1-18 29-46 (195)
351 1lw7_A Transcriptional regulat 95.7 0.0059 2E-07 50.7 3.2 30 101-130 295-329 (365)
352 2iyv_A Shikimate kinase, SK; t 95.7 0.0037 1.3E-07 46.3 1.8 18 1-18 8-25 (184)
353 2bwj_A Adenylate kinase 5; pho 95.7 0.0031 1.1E-07 47.1 1.4 18 1-18 18-35 (199)
354 2xb4_A Adenylate kinase; ATP-b 95.7 0.0038 1.3E-07 48.1 1.9 18 1-18 6-23 (223)
355 3tkl_A RAS-related protein RAB 95.7 0.0036 1.2E-07 46.4 1.7 19 1-19 22-40 (196)
356 3pxi_A Negative regulator of g 95.7 0.023 7.8E-07 51.7 7.3 26 121-147 580-605 (758)
357 2bov_A RAla, RAS-related prote 95.7 0.0036 1.2E-07 46.8 1.7 18 1-18 20-37 (206)
358 1vg8_A RAS-related protein RAB 95.7 0.0037 1.3E-07 46.8 1.7 19 1-19 14-32 (207)
359 3a1s_A Iron(II) transport prot 95.7 0.0039 1.3E-07 49.3 1.9 19 1-19 11-29 (258)
360 1ukz_A Uridylate kinase; trans 95.7 0.0039 1.3E-07 46.9 1.8 17 1-17 21-37 (203)
361 2bme_A RAB4A, RAS-related prot 95.7 0.003 1E-07 46.4 1.2 18 1-18 16-33 (186)
362 2vli_A Antibiotic resistance p 95.6 0.0029 9.8E-08 46.7 1.0 19 1-19 11-29 (183)
363 2gf9_A RAS-related protein RAB 95.6 0.0038 1.3E-07 46.2 1.7 19 1-19 28-46 (189)
364 3kkq_A RAS-related protein M-R 95.6 0.0038 1.3E-07 45.8 1.7 18 1-18 24-41 (183)
365 2wwf_A Thymidilate kinase, put 95.6 0.0038 1.3E-07 47.2 1.7 18 1-18 16-33 (212)
366 1aky_A Adenylate kinase; ATP:A 95.6 0.0042 1.4E-07 47.5 1.9 18 1-18 10-27 (220)
367 2cdn_A Adenylate kinase; phosp 95.6 0.0043 1.5E-07 46.7 1.9 18 1-18 26-43 (201)
368 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0041 1.4E-07 45.5 1.7 18 1-18 11-28 (186)
369 1qf9_A UMP/CMP kinase, protein 95.6 0.0035 1.2E-07 46.4 1.3 17 1-17 12-28 (194)
370 2il1_A RAB12; G-protein, GDP, 95.6 0.004 1.4E-07 46.4 1.6 18 1-18 32-49 (192)
371 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0034 1.2E-07 46.3 1.2 18 1-18 13-30 (184)
372 2xtp_A GTPase IMAP family memb 95.6 0.0036 1.2E-07 49.1 1.4 19 1-19 28-46 (260)
373 1zbd_A Rabphilin-3A; G protein 95.6 0.0045 1.6E-07 46.3 1.9 19 1-19 14-32 (203)
374 1z06_A RAS-related protein RAB 95.6 0.0043 1.5E-07 45.9 1.7 18 1-18 26-43 (189)
375 3i8s_A Ferrous iron transport 95.6 0.0037 1.3E-07 49.9 1.4 19 1-19 9-27 (274)
376 2gf0_A GTP-binding protein DI- 95.6 0.0035 1.2E-07 46.5 1.2 18 1-18 14-31 (199)
377 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0046 1.6E-07 48.9 1.9 18 1-18 10-27 (260)
378 2cjw_A GTP-binding protein GEM 95.5 0.0044 1.5E-07 46.4 1.7 17 1-17 12-28 (192)
379 2a5j_A RAS-related protein RAB 95.5 0.0044 1.5E-07 46.0 1.6 19 1-19 27-45 (191)
380 2qu8_A Putative nucleolar GTP- 95.5 0.0046 1.6E-07 47.5 1.8 18 1-18 35-52 (228)
381 1jbk_A CLPB protein; beta barr 95.5 0.0057 2E-07 44.7 2.2 19 1-19 49-67 (195)
382 1ltq_A Polynucleotide kinase; 95.5 0.0047 1.6E-07 49.5 1.9 24 139-162 191-214 (301)
383 2fg5_A RAB-22B, RAS-related pr 95.5 0.0039 1.3E-07 46.4 1.2 19 1-19 29-47 (192)
384 3cmu_A Protein RECA, recombina 95.5 0.03 1E-06 56.0 7.7 69 110-178 449-551 (2050)
385 3reg_A RHO-like small GTPase; 95.5 0.0047 1.6E-07 45.9 1.7 18 1-18 29-46 (194)
386 3bwd_D RAC-like GTP-binding pr 95.5 0.0048 1.6E-07 45.0 1.7 18 1-18 14-31 (182)
387 4bas_A ADP-ribosylation factor 95.5 0.0048 1.6E-07 45.8 1.7 18 1-18 23-40 (199)
388 3oes_A GTPase rhebl1; small GT 95.5 0.0039 1.3E-07 46.7 1.2 19 1-19 30-48 (201)
389 1e4v_A Adenylate kinase; trans 95.4 0.0042 1.4E-07 47.4 1.3 17 1-17 6-22 (214)
390 2atv_A RERG, RAS-like estrogen 95.4 0.005 1.7E-07 45.9 1.7 18 1-18 34-51 (196)
391 3iev_A GTP-binding protein ERA 95.4 0.0051 1.8E-07 49.9 1.9 18 1-18 16-33 (308)
392 1nn5_A Similar to deoxythymidy 95.4 0.0049 1.7E-07 46.6 1.7 18 1-18 15-32 (215)
393 1zd9_A ADP-ribosylation factor 95.4 0.005 1.7E-07 45.6 1.7 18 1-18 28-45 (188)
394 3cnl_A YLQF, putative uncharac 95.4 0.005 1.7E-07 49.0 1.7 20 1-20 105-124 (262)
395 3tlx_A Adenylate kinase 2; str 95.4 0.0054 1.8E-07 48.0 1.9 17 1-17 35-51 (243)
396 1x3s_A RAS-related protein RAB 95.4 0.0052 1.8E-07 45.4 1.7 18 1-18 21-38 (195)
397 2h57_A ADP-ribosylation factor 95.4 0.0034 1.2E-07 46.5 0.7 19 1-19 27-45 (190)
398 4dhe_A Probable GTP-binding pr 95.4 0.0021 7.3E-08 48.8 -0.5 19 1-19 35-53 (223)
399 2o52_A RAS-related protein RAB 95.4 0.0046 1.6E-07 46.4 1.4 18 1-18 31-48 (200)
400 1jwy_B Dynamin A GTPase domain 95.4 0.0045 1.5E-07 49.9 1.3 19 1-19 30-48 (315)
401 3dz8_A RAS-related protein RAB 95.4 0.0043 1.5E-07 46.1 1.2 19 1-19 29-47 (191)
402 1zj6_A ADP-ribosylation factor 95.4 0.0047 1.6E-07 45.6 1.3 18 1-18 22-39 (187)
403 2r62_A Cell division protease 95.4 0.0057 1.9E-07 48.1 1.9 19 1-19 50-68 (268)
404 3t5g_A GTP-binding protein RHE 95.4 0.0043 1.5E-07 45.4 1.2 17 1-17 12-28 (181)
405 2f7s_A C25KG, RAS-related prot 95.4 0.0058 2E-07 46.2 1.9 19 1-19 31-49 (217)
406 2p5s_A RAS and EF-hand domain 95.4 0.0053 1.8E-07 45.9 1.6 19 1-19 34-52 (199)
407 3cph_A RAS-related protein SEC 95.4 0.0055 1.9E-07 46.0 1.7 18 1-18 26-43 (213)
408 2wsm_A Hydrogenase expression/ 95.3 0.0046 1.6E-07 47.0 1.2 19 1-19 36-54 (221)
409 2ew1_A RAS-related protein RAB 95.3 0.0045 1.6E-07 46.8 1.2 18 1-18 32-49 (201)
410 2q3h_A RAS homolog gene family 95.3 0.0061 2.1E-07 45.5 1.9 18 1-18 26-43 (201)
411 2bcg_Y Protein YP2, GTP-bindin 95.3 0.0046 1.6E-07 46.4 1.2 18 1-18 14-31 (206)
412 2h17_A ADP-ribosylation factor 95.3 0.0043 1.5E-07 45.6 0.9 18 1-18 27-44 (181)
413 1zuh_A Shikimate kinase; alpha 95.3 0.0065 2.2E-07 44.3 1.8 18 1-18 13-30 (168)
414 1h65_A Chloroplast outer envel 95.3 0.0052 1.8E-07 48.7 1.3 19 1-19 45-63 (270)
415 2iwr_A Centaurin gamma 1; ANK 95.3 0.0043 1.5E-07 45.3 0.8 18 1-18 13-30 (178)
416 3llu_A RAS-related GTP-binding 95.3 0.0053 1.8E-07 45.8 1.3 20 1-20 26-45 (196)
417 3c5c_A RAS-like protein 12; GD 95.3 0.0063 2.2E-07 45.1 1.7 18 1-18 27-44 (187)
418 1njg_A DNA polymerase III subu 95.3 0.0075 2.6E-07 45.6 2.2 42 119-162 125-166 (250)
419 2fh5_B SR-beta, signal recogni 95.2 0.0063 2.1E-07 45.9 1.7 19 1-19 13-31 (214)
420 2fv8_A H6, RHO-related GTP-bin 95.2 0.0053 1.8E-07 46.3 1.2 19 1-19 31-49 (207)
421 1g5t_A COB(I)alamin adenosyltr 95.2 0.021 7E-07 43.6 4.4 70 108-178 106-179 (196)
422 2j1l_A RHO-related GTP-binding 95.2 0.006 2E-07 46.3 1.4 18 1-18 40-57 (214)
423 1gwn_A RHO-related GTP-binding 95.2 0.0054 1.9E-07 46.5 1.2 18 1-18 34-51 (205)
424 3def_A T7I23.11 protein; chlor 95.2 0.006 2.1E-07 48.2 1.4 19 1-19 42-60 (262)
425 2aka_B Dynamin-1; fusion prote 95.1 0.0056 1.9E-07 48.8 1.1 19 1-19 32-50 (299)
426 1uj2_A Uridine-cytidine kinase 95.1 0.0086 3E-07 46.9 2.2 18 1-18 28-45 (252)
427 2grj_A Dephospho-COA kinase; T 95.1 0.0078 2.7E-07 45.6 1.8 17 1-17 18-34 (192)
428 2fu5_C RAS-related protein RAB 95.1 0.0044 1.5E-07 45.4 0.4 18 1-18 14-31 (183)
429 1a7j_A Phosphoribulokinase; tr 95.1 0.0039 1.3E-07 50.3 0.1 17 2-18 12-28 (290)
430 2p65_A Hypothetical protein PF 95.0 0.0066 2.3E-07 44.3 1.3 19 1-19 49-67 (187)
431 2yc2_C IFT27, small RAB-relate 95.0 0.0042 1.4E-07 46.4 0.2 18 1-18 26-43 (208)
432 2b6h_A ADP-ribosylation factor 95.0 0.0062 2.1E-07 45.4 1.1 18 1-18 35-52 (192)
433 2gco_A H9, RHO-related GTP-bin 95.0 0.0066 2.3E-07 45.5 1.2 18 1-18 31-48 (201)
434 3be4_A Adenylate kinase; malar 95.0 0.0074 2.5E-07 46.2 1.4 18 1-18 11-28 (217)
435 1ak2_A Adenylate kinase isoenz 95.0 0.0091 3.1E-07 46.2 1.9 18 1-18 22-39 (233)
436 2g3y_A GTP-binding protein GEM 94.9 0.0095 3.2E-07 45.6 1.9 18 1-18 43-60 (211)
437 2atx_A Small GTP binding prote 94.9 0.0074 2.5E-07 44.7 1.2 18 1-18 24-41 (194)
438 3cmw_A Protein RECA, recombina 94.8 0.059 2E-06 53.2 7.5 67 112-178 451-551 (1706)
439 4djt_A GTP-binding nuclear pro 94.8 0.0039 1.3E-07 47.3 -0.6 18 1-18 17-34 (218)
440 4dcu_A GTP-binding protein ENG 94.8 0.0084 2.9E-07 51.3 1.4 18 1-18 29-46 (456)
441 2f6r_A COA synthase, bifunctio 94.8 0.0097 3.3E-07 47.7 1.7 16 1-16 81-96 (281)
442 4edh_A DTMP kinase, thymidylat 94.8 0.012 4.2E-07 45.2 2.2 19 2-20 13-31 (213)
443 3cpj_B GTP-binding protein YPT 94.8 0.01 3.5E-07 45.3 1.7 18 1-18 19-36 (223)
444 3q3j_B RHO-related GTP-binding 94.7 0.01 3.6E-07 45.1 1.7 18 1-18 33-50 (214)
445 3crm_A TRNA delta(2)-isopenten 94.7 0.011 3.7E-07 48.6 1.9 19 1-19 11-29 (323)
446 3zvl_A Bifunctional polynucleo 94.7 0.01 3.5E-07 50.3 1.7 17 1-17 264-280 (416)
447 2hup_A RAS-related protein RAB 94.7 0.0092 3.2E-07 44.8 1.2 18 1-18 35-52 (201)
448 2x77_A ADP-ribosylation factor 94.6 0.0061 2.1E-07 45.0 0.1 17 1-17 28-44 (189)
449 2chg_A Replication factor C sm 94.6 0.014 4.9E-07 43.6 2.2 41 120-162 102-142 (226)
450 2hf9_A Probable hydrogenase ni 94.6 0.0095 3.2E-07 45.4 1.2 19 1-19 44-62 (226)
451 3sr0_A Adenylate kinase; phosp 94.6 0.013 4.3E-07 45.0 1.8 18 1-18 6-23 (206)
452 4gzl_A RAS-related C3 botulinu 94.6 0.0098 3.4E-07 44.8 1.2 17 1-17 36-52 (204)
453 4hlc_A DTMP kinase, thymidylat 94.6 0.015 5.3E-07 44.4 2.2 19 2-20 9-27 (205)
454 3d3q_A TRNA delta(2)-isopenten 94.5 0.013 4.3E-07 48.5 1.8 19 1-19 13-31 (340)
455 3v9p_A DTMP kinase, thymidylat 94.5 0.011 3.8E-07 46.0 1.4 19 2-20 32-50 (227)
456 3n70_A Transport activator; si 94.5 0.016 5.6E-07 41.4 2.1 41 120-162 76-116 (145)
457 2ocp_A DGK, deoxyguanosine kin 94.5 0.013 4.5E-07 45.4 1.7 19 2-20 9-27 (241)
458 2h92_A Cytidylate kinase; ross 94.4 0.014 4.9E-07 44.3 1.9 19 1-19 9-27 (219)
459 2j0v_A RAC-like GTP-binding pr 94.4 0.011 3.9E-07 44.4 1.2 18 1-18 15-32 (212)
460 3umf_A Adenylate kinase; rossm 94.4 0.016 5.4E-07 44.8 1.9 18 1-18 35-52 (217)
461 3hjn_A DTMP kinase, thymidylat 94.3 0.018 6.2E-07 43.7 2.2 19 2-20 7-25 (197)
462 3lv8_A DTMP kinase, thymidylat 94.3 0.014 4.9E-07 45.7 1.7 18 2-19 34-51 (236)
463 3th5_A RAS-related C3 botulinu 93.4 0.0076 2.6E-07 45.2 0.0 17 1-17 36-52 (204)
464 4tmk_A Protein (thymidylate ki 94.3 0.015 5.3E-07 44.7 1.7 19 2-20 10-28 (213)
465 1d2n_A N-ethylmaleimide-sensit 94.2 0.019 6.4E-07 45.3 2.2 18 1-18 70-87 (272)
466 1ypw_A Transitional endoplasmi 94.2 0.016 5.6E-07 53.1 2.0 31 1-34 517-547 (806)
467 1puj_A YLQF, conserved hypothe 94.2 0.014 4.8E-07 46.8 1.3 20 1-20 126-145 (282)
468 3ice_A Transcription terminati 94.2 0.016 5.5E-07 48.9 1.7 19 1-19 180-198 (422)
469 3bgw_A DNAB-like replicative h 94.1 0.094 3.2E-06 44.8 6.4 16 2-17 204-219 (444)
470 3ld9_A DTMP kinase, thymidylat 94.1 0.021 7.3E-07 44.3 2.2 19 2-20 28-46 (223)
471 3exa_A TRNA delta(2)-isopenten 94.1 0.019 6.4E-07 47.1 1.9 18 1-18 9-26 (322)
472 1p5z_B DCK, deoxycytidine kina 94.0 0.012 4.1E-07 46.4 0.6 18 2-19 31-48 (263)
473 3t15_A Ribulose bisphosphate c 94.0 0.019 6.3E-07 46.2 1.7 18 2-19 43-60 (293)
474 3foz_A TRNA delta(2)-isopenten 94.0 0.02 6.8E-07 46.8 1.9 18 1-18 16-33 (316)
475 2qmh_A HPR kinase/phosphorylas 94.0 0.019 6.4E-07 44.0 1.6 18 1-18 40-57 (205)
476 1ofh_A ATP-dependent HSL prote 93.9 0.024 8.1E-07 45.1 2.2 20 1-20 56-75 (310)
477 1wxq_A GTP-binding protein; st 93.9 0.017 5.8E-07 48.7 1.4 41 82-126 181-221 (397)
478 3tmk_A Thymidylate kinase; pho 93.9 0.02 6.7E-07 44.3 1.7 19 2-20 12-30 (216)
479 3pvs_A Replication-associated 93.9 0.029 1E-06 48.0 2.9 20 1-20 56-75 (447)
480 1ko7_A HPR kinase/phosphatase; 93.9 0.024 8.4E-07 46.3 2.2 17 1-17 150-166 (314)
481 3ec1_A YQEH GTPase; atnos1, at 93.9 0.02 6.8E-07 47.7 1.7 18 1-18 168-185 (369)
482 3tqf_A HPR(Ser) kinase; transf 93.9 0.02 7E-07 42.9 1.6 16 1-16 22-37 (181)
483 1xwi_A SKD1 protein; VPS4B, AA 93.8 0.024 8.1E-07 46.2 2.1 19 1-19 51-69 (322)
484 3r7w_A Gtpase1, GTP-binding pr 93.8 0.023 7.7E-07 46.0 1.9 18 1-18 9-26 (307)
485 3eie_A Vacuolar protein sortin 93.8 0.025 8.7E-07 45.9 2.1 19 1-19 57-75 (322)
486 2hjg_A GTP-binding protein ENG 93.7 0.02 6.9E-07 48.6 1.5 19 1-19 9-27 (436)
487 2qgz_A Helicase loader, putati 93.6 0.028 9.6E-07 45.6 2.2 51 118-168 212-264 (308)
488 3syl_A Protein CBBX; photosynt 93.6 0.024 8.2E-07 45.3 1.7 19 1-19 73-91 (309)
489 4b4t_M 26S protease regulatory 93.6 0.026 9E-07 48.1 2.0 19 2-20 222-240 (434)
490 4b4t_K 26S protease regulatory 93.6 0.027 9.1E-07 48.0 2.0 20 1-20 212-231 (428)
491 2x2e_A Dynamin-1; nitration, h 93.6 0.015 5.3E-07 47.9 0.5 19 1-19 37-55 (353)
492 3gj0_A GTP-binding nuclear pro 93.5 0.014 4.8E-07 44.3 0.2 41 110-150 166-211 (221)
493 3hws_A ATP-dependent CLP prote 93.5 0.031 1.1E-06 46.1 2.2 19 1-19 57-75 (363)
494 3pfi_A Holliday junction ATP-d 93.4 0.031 1.1E-06 45.3 2.2 19 1-19 61-79 (338)
495 4b4t_L 26S protease subunit RP 93.4 0.029 1E-06 47.9 2.0 20 1-20 221-240 (437)
496 3geh_A MNME, tRNA modification 93.4 0.022 7.4E-07 49.0 1.2 18 1-18 230-247 (462)
497 3sjy_A Translation initiation 93.4 0.046 1.6E-06 45.9 3.2 20 1-20 14-33 (403)
498 4b4t_J 26S protease regulatory 93.4 0.03 1E-06 47.3 2.0 19 2-20 189-207 (405)
499 3a8t_A Adenylate isopentenyltr 93.4 0.029 9.8E-07 46.4 1.8 18 1-18 46-63 (339)
500 3l0i_B RAS-related protein RAB 93.4 0.0045 1.6E-07 46.3 -2.8 18 1-18 39-56 (199)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.9e-55 Score=367.07 Aligned_cols=187 Identities=27% Similarity=0.449 Sum_probs=168.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc------cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++... ..++.+|||||++.+++.+||+||+.++..... .
T Consensus 60 iGpnGaGKSTLlr~i~GL~~-p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~ 135 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---T 135 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---C
T ss_pred EcCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---C
Confidence 69999999999999999998 7999999999998642 134679999999999999999999999865432 2
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
...+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++ |.
T Consensus 136 ~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~ 215 (366)
T 3tui_C 136 PKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215 (366)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999754 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||++||++ +.+..+|||+++|++ |++++.|++++++.
T Consensus 216 Tii~vTHdl-~~~~~~aDrv~vl~~-G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 216 TILLITHEM-DVVKRICDCVAVISN-GELIEQDTVSEVFS 253 (366)
T ss_dssp EEEEEESCH-HHHHHHCSEEEEEET-TEEEECCBHHHHHS
T ss_pred EEEEEecCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 999999997 478899999999997 99999999998864
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.8e-54 Score=366.04 Aligned_cols=187 Identities=27% Similarity=0.390 Sum_probs=169.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+||.+||+||+.|+..... ....+.
T Consensus 35 lGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~ 110 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVI 110 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHH
T ss_pred EcCCCchHHHHHHHHHcCCC-CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence 69999999999999999998 7999999999998643 334679999999999999999999999876542 234456
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~v 190 (381)
T 3rlf_A 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190 (381)
T ss_dssp HHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999765 9999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||.. ++..+|||+++|++ |+++..|++++++.
T Consensus 191 THd~~-ea~~~aDri~vl~~-G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 191 THDQV-EAMTLADKIVVLDA-GRVAQVGKPLELYH 223 (381)
T ss_dssp CSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred ECCHH-HHHHhCCEEEEEEC-CEEEEEeCHHHHHh
Confidence 99974 78999999999998 99999999998865
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.3e-54 Score=344.58 Aligned_cols=188 Identities=27% Similarity=0.358 Sum_probs=160.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++.... .++.+||+||++.+++.+||+||+.++........
T Consensus 37 iG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~ 115 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA 115 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSC
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccC
Confidence 69999999999999999998 79999999999985421 12359999999999999999999998765432112
Q ss_pred ccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q psy4235 74 TTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE- 151 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~- 151 (197)
.......+++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 195 (235)
T 3tif_A 116 MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195 (235)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 2334456778899999999875 49999999999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 152 SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 152 ~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
|.|+|++||++. +..+||++++|++ |+++..++++++.
T Consensus 196 g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~~~~ 233 (235)
T 3tif_A 196 GKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLRGFD 233 (235)
T ss_dssp CCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC---
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChhhhc
Confidence 999999999974 4689999999998 8998888877653
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.9e-54 Score=351.13 Aligned_cols=187 Identities=28% Similarity=0.380 Sum_probs=164.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-----ccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-----TVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++.. ..+++.+|||||++. .++.+||+||+.|+..... .
T Consensus 40 iGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~ 115 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK---L 115 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC---C
T ss_pred ECCCCCCHHHHHHHHHcCCC-CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC---C
Confidence 69999999999999999998 799999999999842 124567999999973 4447899999999865432 2
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~ 153 (197)
...+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ ++|.
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~ 195 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC
Confidence 344556789999999999999999999999999999999999999999999999999999999999999999997 5699
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||++||++. .+..+||++++|++ |++++.|++++++.
T Consensus 196 tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 196 TIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPKEVFA 233 (275)
T ss_dssp EEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECHHHHTH
T ss_pred EEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhc
Confidence 9999999985 68899999999987 99999999998754
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.5e-54 Score=364.27 Aligned_cols=187 Identities=25% Similarity=0.354 Sum_probs=165.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC----Cc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI----SR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~----~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||||+|+|+++ |++|+|+++|+++ .. ...++.+|||||++.+||.+||+||+.|+..... ..
T Consensus 36 lGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~ 111 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFEQ-PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GR 111 (359)
T ss_dssp EESTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CC
T ss_pred ECCCCchHHHHHHHHhcCCC-CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CC
Confidence 59999999999999999998 7999999999987 22 2335679999999999999999999998754322 12
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA-CESRI 154 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~~~ 154 (197)
..+.++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++. +.|.|
T Consensus 112 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t 191 (359)
T 3fvq_A 112 TAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191 (359)
T ss_dssp SHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999888765 46899
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|++|||.. ++..+|||+++|++ |+++..|+++++..
T Consensus 192 vi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 192 AVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPHELYR 228 (359)
T ss_dssp EEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred EEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHHHHHh
Confidence 999999974 78999999999997 99999999998865
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-53 Score=346.68 Aligned_cols=187 Identities=27% Similarity=0.379 Sum_probs=164.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------------ccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------------TVMSRISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++.. ..+++.+|||||++.+++.+||+||+.+
T Consensus 38 iG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 116 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 116 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHh
Confidence 69999999999999999998 799999999998851 1234569999999999999999999998
Q ss_pred HH-HccCCccccHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy4235 65 MA-KLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV 142 (197)
Q Consensus 65 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~ 142 (197)
+. .... .......+++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.
T Consensus 117 ~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~ 193 (262)
T 1b0u_A 117 APIQVLG---LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 193 (262)
T ss_dssp HHHHTTC---CCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred hHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 64 3221 1223345678899999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 143 NLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 143 ~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++|++++++|.|||++||+.. .+..+||++++|++ |+++..|++++++.
T Consensus 194 ~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 194 RIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 999999877899999999974 78889999999987 89999999988764
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.5e-53 Score=345.75 Aligned_cols=187 Identities=28% Similarity=0.439 Sum_probs=164.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--cc---cccceEEEEecCCCCCCCCCHHHHHHHHH-HccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RT---VMSRISGYVAQQDFLIEELTVLEHLQFMA-KLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~-~~~~~~~~ 74 (197)
+||||||||||+|+|+|+++ |++|+|+++|+++. .. .+++.++||||++.+++.+||+||+.++. .... .
T Consensus 56 iG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~---~ 131 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK---W 131 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC---C
T ss_pred EcCCCCcHHHHHHHHHcCCC-CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC---C
Confidence 69999999999999999998 79999999999984 11 23456999999999999999999999864 3221 1
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
......+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|.|
T Consensus 132 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~t 211 (263)
T 2olj_A 132 PREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 211 (263)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 22334567889999999999999999999999999999999999999999999999999999999999999999877999
Q ss_pred EEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 155 VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 155 iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||++||+.. .+..+||++++|++ |++++.|++++++.
T Consensus 212 vi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 212 MVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKPEDLFD 248 (263)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred EEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 999999974 78889999999987 89988999988764
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.6e-53 Score=357.97 Aligned_cols=187 Identities=25% Similarity=0.379 Sum_probs=167.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|.++|+++... ..++.+|||||++.+|+.+||+||+.|+..... ......
T Consensus 47 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~ 122 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEM 122 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHH
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHH
Confidence 59999999999999999998 7999999999998542 345679999999999999999999999765432 123345
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus 123 ~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 202 (355)
T 1z47_A 123 DARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202 (355)
T ss_dssp HHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||. +++..+||++++|++ |+++..|++++++.
T Consensus 203 THd~-~~a~~~adri~vl~~-G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 203 THDQ-EEALEVADRVLVLHE-GNVEQFGTPEEVYE 235 (355)
T ss_dssp CSCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred CCCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9997 478899999999987 99999999998864
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3e-53 Score=342.82 Aligned_cols=188 Identities=25% Similarity=0.405 Sum_probs=165.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... .+++.+||+||++.+++.+||+||+.++..... .....
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~ 122 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSE 122 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHH
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHH
Confidence 59999999999999999998 7999999999998532 245679999999999999999999998754321 11223
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
..+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|.|||++
T Consensus 123 ~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiiv 202 (256)
T 1vpl_A 123 IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202 (256)
T ss_dssp HHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34678899999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
||++. .+..+||++++|++ |++++.|+++++...
T Consensus 203 tHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 203 SHNML-EVEFLCDRIALIHN-GTIVETGTVEELKER 236 (256)
T ss_dssp ECCHH-HHTTTCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred cCCHH-HHHHHCCEEEEEEC-CEEEEecCHHHHHHh
Confidence 99974 67888999999987 899889999887653
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.5e-53 Score=357.80 Aligned_cols=187 Identities=28% Similarity=0.381 Sum_probs=167.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+..... ....+.
T Consensus 35 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~ 110 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIYK-PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEI 110 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHH
T ss_pred ECCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHH
Confidence 59999999999999999998 7999999999998542 234679999999999999999999999865432 123345
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
++++.++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.++ |.|+|++
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 190 (362)
T 2it1_A 111 DKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190 (362)
T ss_dssp HHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 678899999999999999999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||.. ++..+||++++|++ |+++..|++++++.
T Consensus 191 THd~~-~a~~~adri~vl~~-G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 191 THDQA-EALAMADRIAVIRE-GEILQVGTPDEVYY 223 (362)
T ss_dssp ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred CCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 99974 78899999999997 99999999998864
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.4e-53 Score=358.44 Aligned_cols=187 Identities=27% Similarity=0.382 Sum_probs=166.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------c-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------T-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||||+|+|+++ |++|+|+++|+++.. . ..++.+|||||++.+|+.+||+||+.|+.....
T Consensus 35 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~--- 110 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK--- 110 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---
T ss_pred ECCCCcHHHHHHHHHHcCCC-CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---
Confidence 59999999999999999998 799999999998743 1 234679999999999999999999999865432
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-S 152 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~ 152 (197)
......++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |
T Consensus 111 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 190 (372)
T 1g29_1 111 VPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190 (372)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 123345578899999999999999999999999999999999999999999999999999999999999999999765 8
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|+|++|||. +++..+||++++|++ |+++..|++++++.
T Consensus 191 ~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 191 VTTIYVTHDQ-VEAMTMGDRIAVMNR-GVLQQVGSPDEVYD 229 (372)
T ss_dssp CEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred CEEEEECCCH-HHHHHhCCEEEEEeC-CEEEEeCCHHHHHh
Confidence 9999999997 478899999999987 99999999998864
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-53 Score=358.10 Aligned_cols=187 Identities=27% Similarity=0.372 Sum_probs=166.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+..... ....+.
T Consensus 35 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~ 110 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIYK-PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR---ISKDEV 110 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC---SHHHHT
T ss_pred EcCCCchHHHHHHHHHCCCC-CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHH
Confidence 59999999999999999998 7999999999998543 234679999999999999999999998754321 122233
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
++++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 190 (359)
T 2yyz_A 111 EKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYV 190 (359)
T ss_dssp THHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 467899999999999999999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||.. ++..+||++++|++ |+++..|++++++.
T Consensus 191 THd~~-~~~~~adri~vl~~-G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 191 THDQA-EAMTMASRIAVFNQ-GKLVQYGTPDEVYD 223 (359)
T ss_dssp ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred cCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 99974 78899999999987 99999999998864
No 13
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-53 Score=341.57 Aligned_cols=185 Identities=27% Similarity=0.434 Sum_probs=163.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... ..++.+||+||++.+++.+||+||+.++..... ....
T Consensus 30 iG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~-----~~~~ 103 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE-----RVER 103 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC-----HHHH
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC-----CchH
Confidence 59999999999999999998 7999999999998532 335679999999999999999999988643211 1122
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++|++++++ |.|+|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v 183 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 567889999999999999999999999999999999999999999999999999999999999999999754 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. .+..+||++++|++ |+++..|++++++.
T Consensus 184 tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 184 THDLI-EAAMLADEVAVMLN-GRIVEKGKLKELFS 216 (240)
T ss_dssp ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred eCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 99974 68899999999987 89988999988764
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-53 Score=357.83 Aligned_cols=187 Identities=28% Similarity=0.395 Sum_probs=166.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||||+|+|+++ |++|+|.++|+++.. ...++.+|||||++.+|+.+||+||+.|+..... .
T Consensus 37 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~ 112 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---M 112 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---C
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---C
Confidence 59999999999999999998 799999999998743 2345679999999999999999999998754321 2
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SR 153 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~ 153 (197)
......+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 192 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 23345678999999999999999999999999999999999999999999999999999999999999999999754 89
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|+|++|||.. ++..+||++++|++ |+++..|++++++.
T Consensus 193 tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 193 TLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPEDLYD 230 (353)
T ss_dssp EEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999974 78899999999987 99999999998864
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.8e-53 Score=341.95 Aligned_cols=187 Identities=22% Similarity=0.309 Sum_probs=162.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCHHHHHHHHHHc-cCCc---
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTVLEHLQFMAKL-TMDR--- 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~~~--- 72 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... ..++.++|+||++.+++.+||.||+.++... ....
T Consensus 39 iG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 117 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNS 117 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccc
Confidence 59999999999999999998 7999999999998532 1245699999999999999999999886432 1110
Q ss_pred ------cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 73 ------RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 73 ------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
........+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 197 (257)
T 1g6h_A 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197 (257)
T ss_dssp HHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 01122345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhH
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSK 190 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~ 190 (197)
+++++|.|||++||+.. .+..+||++++|++ |++++.|++++
T Consensus 198 ~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 239 (257)
T 1g6h_A 198 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGEE 239 (257)
T ss_dssp HHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESHH
T ss_pred HHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCHHH
Confidence 99877999999999985 67889999999987 88888898888
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=6.9e-53 Score=334.70 Aligned_cols=180 Identities=27% Similarity=0.369 Sum_probs=157.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc------cc-ceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------MS-RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~------~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++.... .+ +.++|+||++.+++.+||.||+.++.....
T Consensus 36 iG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~--- 111 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG--- 111 (224)
T ss_dssp EECTTSCHHHHHHHHTTSSC-CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---
Confidence 59999999999999999998 79999999999985321 12 569999999999999999999998754332
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++++++|.
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~ 191 (224)
T 2pcj_A 112 KPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT 191 (224)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 12233456788999999999999999999999999999999999999999999999999999999999999999987799
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
|+|++||+.. .+ .+||++++|++ |++++.|+
T Consensus 192 tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 192 SIVMVTHERE-LA-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp EEEEECSCHH-HH-TTSSEEEEEET-TEEEEEEE
T ss_pred EEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEEee
Confidence 9999999964 45 89999999987 88888774
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.1e-53 Score=357.59 Aligned_cols=187 Identities=26% Similarity=0.333 Sum_probs=160.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|+++|+++... ..++.+|||||++.+|+.+||+||+.|+..... ......
T Consensus 43 lGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~ 118 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEI 118 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHH
T ss_pred ECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHH
Confidence 59999999999999999998 7999999999998543 234679999999999999999999998643321 223345
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++ |.|+|++
T Consensus 119 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 198 (372)
T 1v43_A 119 DKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 198 (372)
T ss_dssp HHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||.. ++..+||++++|++ |+++..|++++++.
T Consensus 199 THd~~-~a~~~adri~vl~~-G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 199 THDQV-EAMTMGDRIAVMNR-GQLLQIGSPTEVYL 231 (372)
T ss_dssp ESCHH-HHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred eCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 99974 78899999999997 99999999998864
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.4e-53 Score=354.78 Aligned_cols=184 Identities=27% Similarity=0.374 Sum_probs=164.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||||+|+|+++ |++|+|.++|+++... ..++.+|||||++.+|+.+||+||+.|+....... . .
T Consensus 32 lGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~-~- 105 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D-P- 105 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C-H-
T ss_pred ECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC---H-H-
Confidence 59999999999999999998 7999999999998542 33567999999999999999999999976532211 1 1
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~ 158 (197)
+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.+ .|.|+|++
T Consensus 106 -~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 106 -KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp -HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 6788999999999999999999999999999999999999999999999999999999999999999975 48999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||. +++..+||++++|++ |+++..|++++++.
T Consensus 185 THd~-~~~~~~adri~vl~~-G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 185 THDQ-TEARIMADRIAVVMD-GKLIQVGKPEEIFE 217 (348)
T ss_dssp ESCH-HHHHHHCSEEEEESS-SCEEEEECHHHHHS
T ss_pred eCCH-HHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9997 478899999999987 89999999998864
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-52 Score=336.45 Aligned_cols=186 Identities=24% Similarity=0.374 Sum_probs=161.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc----ccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV----MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.... .++.++|+||++.+++.+||+||+.++..... ..
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~ 112 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DK 112 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CS
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CH
Confidence 59999999999999999998 79999999999985321 23459999999999999999999988532111 11
Q ss_pred HHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 77 LELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
....+.+.++++.++ +.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tv 192 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 233467788999995 9888999999999999999999999999999999999999999999999999999998778999
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|++||+.. .+..+||++++|++ |+++..|+++++..
T Consensus 193 i~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 193 LLVEQNAL-GALKVAHYGYVLET-GQIVLEGKASELLD 228 (240)
T ss_dssp EEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHHHHHT
T ss_pred EEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHhc
Confidence 99999974 68899999999987 88888898887753
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.3e-53 Score=342.76 Aligned_cols=185 Identities=30% Similarity=0.373 Sum_probs=163.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... .+++.++|++|++.+++.+||.||+.++..... ..
T Consensus 43 iG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~ 116 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYLS-PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GS 116 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSSC-CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----ST
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cH
Confidence 69999999999999999998 7999999999998642 234568999999998888999999998654321 11
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT------EPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
...+++.++++.+++.+..++++.+||||||||++|||||+. +|++|||||||+|||+.++..++++|++++++
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 234678899999999999999999999999999999999999 99999999999999999999999999999866
Q ss_pred -CCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 152 -SRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 152 -~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+.|+|++||+. +.+..+||++++|++ |++++.|++++++.
T Consensus 197 ~~~tvi~vtHdl-~~~~~~~d~v~vl~~-G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 197 EPLAVCCVLHDL-NLAALYADRIMLLAQ-GKLVACGTPEEVLN 237 (266)
T ss_dssp SSEEEEEECSCH-HHHHHHCSEEEEEET-TEEEEEECHHHHCC
T ss_pred CCCEEEEEEcCH-HHHHHhCCEEEEEEC-CEEEEEcCHHHHhC
Confidence 56999999997 478889999999997 99999999988753
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-52 Score=337.79 Aligned_cols=187 Identities=24% Similarity=0.354 Sum_probs=162.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++....+++.+||+||++ .+++.+||+||+.++.... ... ...
T Consensus 39 iG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~---~~~ 113 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLIE-PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPD---RDP 113 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTT---SCS
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCH---HHH
Confidence 59999999999999999998 79999999999885433456799999996 5667789999999864321 111 112
Q ss_pred HHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 80 NKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 80 ~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
.+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|.|||+
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~ 193 (266)
T 2yz2_A 114 VPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 193 (266)
T ss_dssp HHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 35688999999999 8899999999999999999999999999999999999999999999999999999877899999
Q ss_pred EecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 158 AIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+||++. .+..+||++++|++ |+++..|++++++..
T Consensus 194 vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 194 ISHDIE-TVINHVDRVVVLEK-GKKVFDGTRMEFLEK 228 (266)
T ss_dssp ECSCCT-TTGGGCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred EeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhcC
Confidence 999975 67889999999987 889889999887653
No 22
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.1e-51 Score=329.79 Aligned_cols=181 Identities=25% Similarity=0.346 Sum_probs=159.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |+ |+|.++|.++.. ..+++.++|+||++.+++.+||+||+.++.... ..
T Consensus 32 iG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~-- 103 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK----TR-- 103 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST----TC--
T ss_pred ECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC----Cc--
Confidence 59999999999999999998 68 999999998743 234566999999999999999999998752111 11
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ-------ILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~-------llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
.+.+.++++.+++.+..++++.+||||||||++|||||+.+|+ +|||||||+|||+.++..+.++|+++++
T Consensus 104 --~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~ 181 (249)
T 2qi9_C 104 --TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181 (249)
T ss_dssp --HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999999999999999 9999999999999999999999999987
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|.|+|++||+.. .+..+||++++|++ |++++.|+++++..
T Consensus 182 ~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 182 QGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREEVLT 222 (249)
T ss_dssp TTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHHHHSC
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 7899999999974 67899999999987 88888898887753
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-51 Score=336.34 Aligned_cols=189 Identities=25% Similarity=0.343 Sum_probs=157.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--c---ccccceEEEEecCCCC--CCCCCHHHHHHHHHHccC-Cc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--R---TVMSRISGYVAQQDFL--IEELTVLEHLQFMAKLTM-DR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~---~~~~~~~~~v~q~~~~--~~~ltv~e~l~~~~~~~~-~~ 72 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++. . ..+++.++|+||++.+ .+.+||+||+.++..... ..
T Consensus 53 iG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~ 131 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVY 131 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC-------
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccc
Confidence 69999999999999999998 79999999999875 2 2245679999999754 345799999987531100 00
Q ss_pred cccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235 73 RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES 152 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 152 (197)
........+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|++++++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g 211 (279)
T 2ihy_A 132 QDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211 (279)
T ss_dssp --CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC
Confidence 00112335678899999999999999999999999999999999999999999999999999999999999999997668
Q ss_pred CEE--EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 153 RIV--ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 153 ~~i--ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
.|| |++||+.. .+..+||++++|++ |++++.|+++++.
T Consensus 212 ~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 212 PTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVEDIL 251 (279)
T ss_dssp TTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHHHHC
T ss_pred CEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHh
Confidence 899 99999974 67889999999987 8998889888764
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.9e-51 Score=327.44 Aligned_cols=186 Identities=23% Similarity=0.251 Sum_probs=152.5
Q ss_pred CCCCCCcHHHHHHHHhcC--cCCCceeEEEECCeeCCccc---c-cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTV---M-SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~--~~~~~~G~i~~~g~~~~~~~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+|+|+|+ ++ |++|+|.++|.++.... . ++.++|+||++.+++.+||.||+.+..........
T Consensus 35 ~G~nGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGDPEYT-VERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREV 113 (250)
T ss_dssp ECSTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCC
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccC
Confidence 599999999999999998 56 79999999999985421 1 23489999999999999999999886431100001
Q ss_pred cHHHHHHHHHHHHHHcCC-cccccccCCC-CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235 75 TWLELNKTITRVMENLGI-NHRRQVQISG-LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES 152 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l-~~~~~~~~~~-LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 152 (197)
......+++.++++.+++ .+..++++.+ ||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++|
T Consensus 114 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 193 (250)
T 2d2e_A 114 GVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN 193 (250)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 122334678899999999 5788999999 99999999999999999999999999999999999999999999997678
Q ss_pred CEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChh
Q psy4235 153 RIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVS 189 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~ 189 (197)
.|||++||+.. .+..+ ||++++|++ |+++..|+++
T Consensus 194 ~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~~ 229 (250)
T 2d2e_A 194 FGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGPE 229 (250)
T ss_dssp CEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESHH
T ss_pred CEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCHH
Confidence 99999999975 66777 599999987 8898889887
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1e-50 Score=330.55 Aligned_cols=188 Identities=24% Similarity=0.357 Sum_probs=155.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~ 76 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... .+++.++||||++.+|+ .||+||+.++...... .....
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~ 128 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITA 128 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHH
Confidence 59999999999999999998 7999999999998532 23456999999999887 5999999875321110 00000
Q ss_pred HHHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy4235 77 LELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESR 153 (197)
Q Consensus 77 ~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~ 153 (197)
......+.++++.+ ++....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ ++.
T Consensus 129 ~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~ 208 (271)
T 2ixe_A 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR 208 (271)
T ss_dssp HHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS
T ss_pred HHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence 11123356778888 788888999999999999999999999999999999999999999999999999999865 489
Q ss_pred EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 154 ~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
|||++||++. .+ ..||++++|++ |+++..|++++++.
T Consensus 209 tviivtHd~~-~~-~~~d~v~~l~~-G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 209 TVLLITQQLS-LA-ERAHHILFLKE-GSVCEQGTHLQLME 245 (271)
T ss_dssp EEEEECSCHH-HH-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred EEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9999999974 45 45999999987 89989999988764
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7e-50 Score=322.69 Aligned_cols=178 Identities=25% Similarity=0.329 Sum_probs=153.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCC-ccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD-RRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~ 79 (197)
+||||||||||+|+|+|+++ |++|+|. +++.++|+||++.+++.+||.||+.++...... ........
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 105 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIHR-PIQGKIE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSSC-CSEEEEE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH
Confidence 59999999999999999998 7999998 235689999999999999999999986432100 00011233
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~iii~ 158 (197)
.+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~v 185 (253)
T 2nq2_C 106 YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185 (253)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 567889999999999999999999999999999999999999999999999999999999999999999876 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
||+.. .+..+||++++|++ |+ ++.|+++++.
T Consensus 186 tHd~~-~~~~~~d~v~~l~~-G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 186 THQPN-QVVAIANKTLLLNK-QN-FKFGETRNIL 216 (253)
T ss_dssp ESCHH-HHHHHCSEEEEEET-TE-EEEEEHHHHC
T ss_pred ecCHH-HHHHhCCEEEEEeC-Ce-EecCCHHHHh
Confidence 99974 67899999999998 77 7888887764
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-49 Score=323.64 Aligned_cols=190 Identities=22% Similarity=0.226 Sum_probs=157.8
Q ss_pred CCCCCCcHHHHHHHHhcCc-CCCceeEEEECCeeCCcc---cc-cceEEEEecCCCCCCCCCHHHHHHHHHH-c---cCC
Q psy4235 1 MSPSGAGKTTLLAALNKRV-KGLVQGEILLNGCPISRT---VM-SRISGYVAQQDFLIEELTVLEHLQFMAK-L---TMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~-~~~~~G~i~~~g~~~~~~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~---~~~ 71 (197)
+||||||||||+|+|+|+. .+|++|+|.++|.++... .. ++.++|+||++.+++.+||.||+.+... . ...
T Consensus 52 ~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~ 131 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ 131 (267)
T ss_dssp ECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGC
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhcc
Confidence 5999999999999999984 126899999999987532 11 2348999999999999999999987542 1 111
Q ss_pred ccccHHHHHHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGIN-HRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.........+++.++++.+++. ...++++. +||||||||++|||||+.+|++|||||||+|||+.+++.++++|++++
T Consensus 132 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 132 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 1112233456788999999996 57888887 599999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCCcchHHhh-cCeEEEEeCCcEEEEecChhHHH
Q psy4235 150 CESRIVICAIHQPTSGVFEK-FDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 150 ~~~~~iii~th~~~~~~~~~-~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
++|.|||++||+.. .+..+ ||++++|++ |+++..|+++++.
T Consensus 212 ~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 212 DGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDFTLVK 253 (267)
T ss_dssp CSSCEEEEECSSGG-GGGTSCCSEEEEEET-TEEEEEECTTHHH
T ss_pred hcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-CEEEEEcCHHHHh
Confidence 67899999999974 56665 899999987 8998999988764
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.7e-50 Score=321.43 Aligned_cols=178 Identities=25% Similarity=0.432 Sum_probs=149.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|+++|.++... .+++.++|+||++.+|+ .||+||+.++.. ...
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~-- 111 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS-- 111 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC--
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC--
Confidence 59999999999999999998 7999999999998542 24567999999998887 599999987521 111
Q ss_pred HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+
T Consensus 112 --~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 189 (247)
T 2ff7_A 112 --VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189 (247)
T ss_dssp --HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1345566666666544 345568999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ ++.|+|++||++. .+ ..||++++|++ |++++.|++++++.
T Consensus 190 ~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~l~~ 232 (247)
T 2ff7_A 190 KIC-KGRTVIIIAHRLS-TV-KNADRIIVMEK-GKIVEQGKHKELLS 232 (247)
T ss_dssp HHH-TTSEEEEECSSGG-GG-TTSSEEEEEET-TEEEEEECHHHHHT
T ss_pred HHc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 995 5899999999974 45 56999999987 89989999988764
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.8e-50 Score=329.93 Aligned_cols=188 Identities=24% Similarity=0.387 Sum_probs=149.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.+|||||++.+|+. ||+||+.++............
T Consensus 86 vG~sGsGKSTLl~ll~gl~~-p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~~~~~~~~~ 163 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFYD-ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAA 163 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSSC-CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTTCCHHHHHHH
T ss_pred ECCCCchHHHHHHHHHcCCC-CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhcccCCHHHHHHH
Confidence 69999999999999999998 7999999999998643 356779999999999865 999999986422110000000
Q ss_pred HHHHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 78 ELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 78 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.....+.+.++.+ |++....+++.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+
T Consensus 164 ~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tv 242 (306)
T 3nh6_A 164 AQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTT 242 (306)
T ss_dssp HHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEE
T ss_pred HHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence 0001112233333 445556677789999999999999999999999999999999999999999999999864 6899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|++||++. .+. .||+|++|++ |++++.|++++++..
T Consensus 243 i~itH~l~-~~~-~aD~i~vl~~-G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 243 IVVAHRLS-TVV-NADQILVIKD-GCIVERGRHEALLSR 278 (306)
T ss_dssp EEECCSHH-HHH-TCSEEEEEET-TEEEEEECHHHHHHH
T ss_pred EEEEcChH-HHH-cCCEEEEEEC-CEEEEECCHHHHHhc
Confidence 99999974 555 4999999997 999999999998753
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-48 Score=317.15 Aligned_cols=177 Identities=20% Similarity=0.237 Sum_probs=155.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEE-EEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISG-YVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~-~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|++ | ++|+|.++|.++.....++.++ |+||++.+ .+||.||+.++..... . .
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~---~----~ 104 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL-P-YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG---L----D 104 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS-C-CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC---C----C
T ss_pred ECCCCCCHHHHHHHHhCCC-C-CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc---h----H
Confidence 5999999999999999998 4 9999999999874321245689 99999887 7899999998754321 1 1
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ |+|++
T Consensus 105 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviiv 181 (263)
T 2pjz_A 105 RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILV 181 (263)
T ss_dssp HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEE
T ss_pred HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEE
Confidence 35688999999999 899999999999999999999999999999999999999999999999999998854 99999
Q ss_pred ecCCcchHHhhcC-eEEEEeCCcEEEEecChhHHHh
Q psy4235 159 IHQPTSGVFEKFD-TVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d-~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
||+.. .+..+|| ++++|++ |++++.|+++++.+
T Consensus 182 tHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 182 THELD-MLNLYKEYKAYFLVG-NRLQGPISVSELLE 215 (263)
T ss_dssp ESCGG-GGGGCTTSEEEEEET-TEEEEEEEHHHHHT
T ss_pred EcCHH-HHHHhcCceEEEEEC-CEEEEecCHHHHHh
Confidence 99974 6788999 9999987 89999999998864
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-49 Score=314.02 Aligned_cols=170 Identities=24% Similarity=0.370 Sum_probs=147.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++. ..++.++|+||++.+++.+||.||+.++...... .. . .
T Consensus 41 iG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~ 112 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-K 112 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-H
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-H
Confidence 59999999999999999998 79999999999875 3566799999999999999999999987543211 11 1 3
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+++.++++.+++.+. ++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++++++|.|||++||
T Consensus 113 ~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtH 191 (214)
T 1sgw_A 113 NEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191 (214)
T ss_dssp HHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES
T ss_pred HHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 568889999999988 9999999999999999999999999999999999999999999999999999766899999999
Q ss_pred CCcchHHhhcCeEEEEeCCcEE
Q psy4235 161 QPTSGVFEKFDTVSLLAHGGLL 182 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~gg~i 182 (197)
++. .+..+||+++++ . |.+
T Consensus 192 d~~-~~~~~~d~v~~~-~-~~~ 210 (214)
T 1sgw_A 192 EEL-SYCDVNENLHKY-S-TKI 210 (214)
T ss_dssp SCC-TTSSEEEEGGGG-B-C--
T ss_pred CHH-HHHHhCCEEEEe-C-Ccc
Confidence 985 688889998755 3 554
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-49 Score=316.81 Aligned_cols=179 Identities=27% Similarity=0.418 Sum_probs=151.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ..+++.++|+||++.+|+. ||+||+.++... ...
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~-- 105 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYT-- 105 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSC--
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccc-cHHHHHhhhccC----CCC--
Confidence 59999999999999999998 799999999999853 2345679999999998874 999999874211 111
Q ss_pred HHHHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRRQ-----------VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.++++.+++.+..+ +++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+
T Consensus 106 --~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 106 --DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp --HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred --HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 234677888888766544 4567999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+++ ++.|+|++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus 184 ~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 184 SLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKHNELVA 226 (243)
T ss_dssp HHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCHHHHHH
T ss_pred Hhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 997 6899999999964 45 56999999987 89988999988754
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.8e-48 Score=311.30 Aligned_cols=177 Identities=24% Similarity=0.384 Sum_probs=147.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ + +|+|.++|.++... .+++.++|+||++.+|+ .||+||+.++.. . ..
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-~----~~-- 121 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-D----AT-- 121 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-T----CC--
T ss_pred ECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-C----CC--
Confidence 59999999999999999987 6 89999999987532 24567999999999886 599999987421 1 11
Q ss_pred HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+
T Consensus 122 --~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 199 (260)
T 2ghi_A 122 --DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE 199 (260)
T ss_dssp --HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 1345566666665432 346788999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++++ +.|+|++||++. .+ ..||++++|++ |+++..|++++++.
T Consensus 200 ~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 200 DLRK-NRTLIIIAHRLS-TI-SSAESIILLNK-GKIVEKGTHKDLLK 242 (260)
T ss_dssp HHTT-TSEEEEECSSGG-GS-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred HhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9964 789999999975 44 56999999987 89989999988764
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=325.61 Aligned_cols=176 Identities=22% Similarity=0.320 Sum_probs=153.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||||+|+|+++ ++|+|+++|+++... .+++.++||||++.+|+ +||+||+.+.. ..
T Consensus 53 lGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~--- 120 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH--- 120 (390)
T ss_dssp EESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS---
T ss_pred ECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc---
Confidence 59999999999999999875 799999999998643 24567999999999998 59999996421 11
Q ss_pred HHHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISG-----------LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
..+++.++++.++|.+..++++.+ |||||||||+|||||+.+|++||||||||+||+..+.++.+.|+
T Consensus 121 -~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~ 199 (390)
T 3gd7_A 121 -SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK 199 (390)
T ss_dssp -CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 124678899999999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. .+.|+|++||+.. +...|||+++|++ |+++..|++++++.
T Consensus 200 ~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 200 QAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSILELYH 242 (390)
T ss_dssp TTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSHHHHHH
T ss_pred HHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 864 4789999999963 4567999999987 99999999999875
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-46 Score=299.03 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=136.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++| .++|+||++.+++. ||+||+.++... ..
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~---- 97 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQFSWIMPG-TIKENIIFGVSY------DE---- 97 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSEEEEEECS----------CEEEECSSCCCCSB-CHHHHHHTTSCC------CH----
T ss_pred ECCCCCCHHHHHHHHhCCCc-CCccEEEECC----------EEEEEecCCcccCC-CHHHHhhccCCc------Ch----
Confidence 59999999999999999998 7999999998 38999999998886 999999875311 01
Q ss_pred HHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH
Q psy4235 81 KTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL-LKQL 148 (197)
Q Consensus 81 ~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l 148 (197)
..+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+. ++++
T Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 98 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 11223333334332 23445689999999999999999999999999999999999999999997 4555
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
. ++.|+|++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus 178 ~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 178 M-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFSELQN 218 (229)
T ss_dssp T-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEEEEEECHHHHHT
T ss_pred h-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 4 4789999999964 44 46999999987 88989999988764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.2e-46 Score=298.69 Aligned_cols=173 Identities=21% Similarity=0.386 Sum_probs=137.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++| .++|+||++.+ +.+||+||+.++.... . ......
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~~---~-~~~~~~ 100 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEMD-KVEGHVAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQLE---E-PYYRSV 100 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCSE-EEEEEEEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCCC---T-THHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCceEEECC----------EEEEEcCCCcC-CCcCHHHHhhCccccC---H-HHHHHH
Confidence 59999999999999999998 7999999998 28999999865 5789999998753211 0 110000
Q ss_pred HHHHHHHHHcCCc-----ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCC
Q psy4235 81 KTITRVMENLGIN-----HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK---QLACES 152 (197)
Q Consensus 81 ~~~~~~l~~~~l~-----~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~---~l~~~~ 152 (197)
....++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+++.|. +++ ++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~ 179 (237)
T 2cbz_A 101 IQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KN 179 (237)
T ss_dssp HHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TT
T ss_pred HHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CC
Confidence 1111123333331 23578899999999999999999999999999999999999999999999995 343 48
Q ss_pred CEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 153 RIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 153 ~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
.|+|++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus 180 ~tviivtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 180 KTRILVTHSMS-YL-PQVDVIIVMSG-GKISEMGSYQELLA 217 (237)
T ss_dssp SEEEEECSCST-TG-GGSSEEEEEET-TEEEEEECHHHHHH
T ss_pred CEEEEEecChH-HH-HhCCEEEEEeC-CEEEEeCCHHHHhh
Confidence 89999999975 44 57999999987 89989999988754
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-46 Score=332.22 Aligned_cols=183 Identities=22% Similarity=0.338 Sum_probs=151.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.++||||++.+|+. ||+||+.++.... ..+
T Consensus 375 vG~sGsGKSTll~~l~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~~~ 447 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLID-PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDA-----TDD 447 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSC-CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSC-----CHH
T ss_pred ECCCCCCHHHHHHHHhCCcc-CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCC-----CHH
Confidence 59999999999999999998 7999999999998542 356779999999999976 9999998753211 111
Q ss_pred HHHH-----HHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNK-----TITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+ .+.+.++.+ |++...++++.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.
T Consensus 448 ~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~- 526 (587)
T 3qf4_A 448 EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT- 526 (587)
T ss_dssp HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-
Confidence 1111 122334433 56667788899999999999999999999999999999999999999999999999985
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
+++|+|++||++. . ...||++++|++ |++++.|+++|+++.
T Consensus 527 ~~~tvi~itH~l~-~-~~~~d~i~vl~~-G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 527 KGCTTFIITQKIP-T-ALLADKILVLHE-GKVAGFGTHKELLEH 567 (587)
T ss_dssp TTCEEEEEESCHH-H-HTTSSEEEEEET-TEEEEEECHHHHHHH
T ss_pred CCCEEEEEecChH-H-HHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence 5899999999974 4 468999999987 999999999998753
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.2e-45 Score=328.76 Aligned_cols=179 Identities=25% Similarity=0.371 Sum_probs=150.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.++||||++.+|+. ||+||+.++... ...
T Consensus 375 vG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~-- 446 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTE----EYS-- 446 (582)
T ss_dssp EECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTS----CCC--
T ss_pred ECCCCCCHHHHHHHHhhccC-CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCCC----CCC--
Confidence 59999999999999999998 7999999999998642 345679999999999986 999999975311 111
Q ss_pred HHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
++++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|+
T Consensus 447 --~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b60_A 447 --REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524 (582)
T ss_dssp --HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 234556666666544 3445668999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++.+ ++|+|++||++. .+ +.||++++|++ |++++.|+++++++
T Consensus 525 ~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 525 ELQK-NRTSLVIAHRLS-TI-EQADEIVVVED-GIIVERGTHSELLA 567 (582)
T ss_dssp HHHT-TSEEEEECSCGG-GT-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred HHhC-CCEEEEEeccHH-HH-HhCCEEEEEEC-CEEEEecCHHHHHH
Confidence 9865 899999999975 44 57999999998 89999999999865
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.8e-45 Score=327.66 Aligned_cols=179 Identities=25% Similarity=0.379 Sum_probs=150.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++.. ..+++.++||||++.+|+. ||+||+.++... ...
T Consensus 375 vG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~-- 446 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFYD-VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEG----EYT-- 446 (582)
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCCC----CCC--
Confidence 69999999999999999998 799999999999853 2356779999999999986 999999985310 111
Q ss_pred HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+
T Consensus 447 --~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 447 --REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524 (582)
T ss_pred --HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 2345666666665544 344568999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++.+ |+|+|++||++. .+ ..||++++|++ |++++.|+++++++
T Consensus 525 ~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 525 ELQK-NKTVLVIAHRLS-TI-EQADEILVVDE-GEIIERGRHADLLA 567 (582)
T ss_pred HHcC-CCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9864 899999999974 44 57999999987 99999999998864
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9e-46 Score=329.35 Aligned_cols=178 Identities=25% Similarity=0.386 Sum_probs=148.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.++||||++.+|+. ||+||+.++... ...
T Consensus 373 vG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~- 444 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT-----ATD- 444 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCH-
T ss_pred ECCCCChHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC-----CCH-
Confidence 59999999999999999998 7999999999998542 356679999999999987 999999875311 111
Q ss_pred HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
+.+.+.++..+ ++....+++.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.++
T Consensus 445 ---~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 521 (578)
T 4a82_A 445 ---EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD 521 (578)
T ss_dssp ---HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 23334444443 3444556667999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. +++|+|++||++. .+ ..||++++|++ |++++.|+++|+++
T Consensus 522 ~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~-G~i~~~g~~~el~~ 564 (578)
T 4a82_A 522 VLS-KDRTTLIVAHRLS-TI-THADKIVVIEN-GHIVETGTHRELIA 564 (578)
T ss_dssp HHT-TTSEEEEECSSGG-GT-TTCSEEEEEET-TEEEEEECHHHHHH
T ss_pred HHc-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 885 4789999999975 44 56999999997 99999999999875
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.7e-45 Score=327.30 Aligned_cols=181 Identities=29% Similarity=0.392 Sum_probs=149.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|+++... .+++.++||+|++.+|+. ||+||+.++.... ...
T Consensus 376 vG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~--- 448 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLYD-PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSV--- 448 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSSC-CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTS---
T ss_pred ECCCCCCHHHHHHHHhcCcC-CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--ccc---
Confidence 59999999999999999998 7999999999998642 345679999999999875 9999999853211 001
Q ss_pred HHHHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.++++.++++.+++.+. ..+++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+
T Consensus 449 -~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 527 (595)
T 2yl4_A 449 -TAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 527 (595)
T ss_dssp -CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence 12456677777776433 233458999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++.+ ++|+|++||++. .+ ..||++++|++ |++++.|+++++++
T Consensus 528 ~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 528 RLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQ-GKITEYGKHEELLS 570 (595)
T ss_dssp HHHT-TSEEEEECCCHH-HH-HHSSEEEEEET-TEEEEEECSCC---
T ss_pred HHhc-CCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9876 789999999974 44 56999999987 89999999988764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-45 Score=328.48 Aligned_cols=178 Identities=26% Similarity=0.401 Sum_probs=148.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ |++|+|.++|.++... .+++.++||||++.+|+. ||+||+.++.... .
T Consensus 387 vG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~-- 457 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFYD-VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGA-----T-- 457 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTC-----C--
T ss_pred ECCCCCcHHHHHHHHhcCcC-CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCC-----C--
Confidence 59999999999999999998 7999999999998542 356779999999999875 9999998752211 1
Q ss_pred HHHHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGINH-----------RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+.+.+.++.+++.+ ...++..+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+
T Consensus 458 --~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 535 (598)
T 3qf4_B 458 --DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW 535 (598)
T ss_dssp --TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 122344444444433 3344457999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. +++|+|++||++. .+ ..||++++|++ |++++.|+++|+++
T Consensus 536 ~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 536 KLM-EGKTSIIIAHRLN-TI-KNADLIIVLRD-GEIVEMGKHDELIQ 578 (598)
T ss_dssp HHH-TTSEEEEESCCTT-HH-HHCSEEEEECS-SSEEECSCHHHHHH
T ss_pred HHc-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 986 5899999999985 44 55999999987 99999999999875
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.1e-44 Score=295.70 Aligned_cols=166 Identities=21% Similarity=0.309 Sum_probs=133.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.++| .++|+||++.+|+. ||+||+. +. .. ..
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~---- 126 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQNSWIMPG-TIKENII-GV--SY----DE---- 126 (290)
T ss_dssp EESTTSSHHHHHHHHTTSSC-EEEEEEECCS----------CEEEECSSCCCCSS-BHHHHHH-TT--CC----CH----
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCcEEEECC----------EEEEEeCCCccCcc-cHHHHhh-Cc--cc----ch----
Confidence 59999999999999999998 7999999987 38999999998885 9999997 32 11 01
Q ss_pred HHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHH
Q psy4235 81 KTITRVMENLGINHR-----------RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL-KQL 148 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l-~~l 148 (197)
..+.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++
T Consensus 127 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~ 206 (290)
T 2bbs_A 127 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 206 (290)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 112333444444322 33456899999999999999999999999999999999999999999974 455
Q ss_pred HhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 149 ACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 149 ~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+ ++.|||++||+.. .+ ..||++++|++ |+++..|+++++..
T Consensus 207 ~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 207 M-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFSELQN 247 (290)
T ss_dssp T-TTSEEEEECCCHH-HH-HHSSEEEEEET-TEEEEEECHHHHHH
T ss_pred h-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CeEEEeCCHHHHhh
Confidence 4 4889999999974 45 56999999987 88988999988754
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.2e-42 Score=307.30 Aligned_cols=174 Identities=24% Similarity=0.241 Sum_probs=149.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.+ ...++|+||++.+++.+||.|++.+..... ....
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~ 449 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEE-PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSN 449 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCH
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCceEEEE----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHH
Confidence 59999999999999999998 79999975 245899999988888899999887641110 0113
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ +|.|+|++|
T Consensus 450 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 450 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529 (607)
T ss_dssp HHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678899999999999999999999999999999999999999999999999999999999999999874 589999999
Q ss_pred cCCcchHHhhcCeEEEEeC-CcEEEEecChhHHHh
Q psy4235 160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQVSKVLK 193 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~~~~~~ 193 (197)
||.. ++..+|||+++|++ .|.+...|++++++.
T Consensus 530 Hd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 530 HDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9974 78899999999973 256667899988765
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-42 Score=304.53 Aligned_cols=174 Identities=24% Similarity=0.242 Sum_probs=149.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.+ ...++|+||++..++.+||.|++........ ...
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~ 379 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVEE-PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSN 379 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCH
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHH
Confidence 59999999999999999998 79999975 2358999999887788999988765411110 012
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4678899999999889999999999999999999999999999999999999999999999999999874 589999999
Q ss_pred cCCcchHHhhcCeEEEEeC-CcEEEEecChhHHHh
Q psy4235 160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQVSKVLK 193 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~~~~~~ 193 (197)
||. +++..+|||+++|++ .|.+...|++++++.
T Consensus 460 Hd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 460 HDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 997 478899999999974 256777899987765
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-42 Score=332.43 Aligned_cols=181 Identities=26% Similarity=0.408 Sum_probs=151.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|.|++. |++|+|.+||.|+.. ..+|++++||||+|.+|+. |++|||.|+.... ...
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~-p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~---~~s-- 1183 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYD-TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPS---SVT-- 1183 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSC-CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTT---TSC--
T ss_pred ECCCCChHHHHHHHHhcCcc-CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCC---CCC--
Confidence 69999999999999999998 799999999999865 3567889999999999998 9999998753211 111
Q ss_pred HHHHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGIN-----------HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
.+++.+.++..++. ........+||||||||++|||||+++|+|||||||||+||+++.+.|.+.|+
T Consensus 1184 --d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~ 1261 (1321)
T 4f4c_A 1184 --MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD 1261 (1321)
T ss_dssp --HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 23455555555543 33334456799999999999999999999999999999999999999999998
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
++. +++|+|+++|.+. ....||+|+||++ |+|++.|+++|+++.
T Consensus 1262 ~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1262 RAR-EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp TTS-SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEECHHHHHHC
T ss_pred HHc-CCCEEEEeccCHH--HHHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence 875 4799999999985 3577999999987 999999999999863
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-41 Score=300.47 Aligned_cols=173 Identities=20% Similarity=0.222 Sum_probs=145.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+|.+++ +.++|++|+....+.+||.+|+.+...... .. ..
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~-----~~ 363 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEIT-ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQYLENASKDAL-ST-----SS 363 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT-CT-----TS
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCcEEEECC---------eeeEeechhcccccCCCHHHHHHHhhhhcc-ch-----hH
Confidence 59999999999999999998 7999998764 347999999777778899999987421110 01 12
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
..+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|
T Consensus 364 ~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs 443 (538)
T 3ozx_A 364 WFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443 (538)
T ss_dssp HHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4577899999999999999999999999999999999999999999999999999999999999999975 589999999
Q ss_pred cCCcchHHhhcCeEEEEeCC-cEEEEecChhH
Q psy4235 160 HQPTSGVFEKFDTVSLLAHG-GLLAYHGQVSK 190 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~g-g~i~~~g~~~~ 190 (197)
||.. ++..+|||+++|+++ +.....+++.+
T Consensus 444 Hdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 444 HDLS-IHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp SCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHH-HHHHhCCEEEEEeCCcceeccCCChHH
Confidence 9974 788999999999751 34444555543
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9e-42 Score=326.28 Aligned_cols=178 Identities=24% Similarity=0.354 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|.|+++ |++|+|.+||.++.. ..+++.++||+|++.+|.. |++|||.|+... ...
T Consensus 450 vG~sGsGKSTll~ll~~~~~-~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~-----~~~- 521 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG-----ITR- 521 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT-----CCH-
T ss_pred EecCCCcHHHHHHHhccccc-cccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc-----chH-
Confidence 69999999999999999998 799999999999865 3456789999999999987 999999986321 111
Q ss_pred HHHHHHHHHHHHcC-----------CcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLG-----------INHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
+++.++++..+ ++.....+..+||||||||++||||++.+|++||||||||+||+.+.+.+.+.|+
T Consensus 522 ---~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~ 598 (1321)
T 4f4c_A 522 ---EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD 598 (1321)
T ss_dssp ---HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred ---HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHH
Confidence 23444444433 3444555667899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. +++|+|++||++. ..+.||+|++|++ |+|++.|+.+|+++
T Consensus 599 ~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 599 KAA-KGRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDHRALMA 641 (1321)
T ss_dssp HHH-TTSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECHHHHHT
T ss_pred HHh-CCCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCHHHHHH
Confidence 886 4899999999975 4688999999987 99999999999875
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.9e-42 Score=326.39 Aligned_cols=182 Identities=26% Similarity=0.400 Sum_probs=149.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc---ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++.. ..+++.+|||+|++.+|+. ||+||+.++.... ..+
T Consensus 422 vG~sGsGKSTl~~ll~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~-----~~~ 494 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDV-----TMD 494 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSC-----CHH
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCC-----CHH
Confidence 69999999999999999998 799999999999854 2456679999999999987 9999999874211 111
Q ss_pred HHHHH-----HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKT-----ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+. +.+.++.+ |++.....++.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.++.+.
T Consensus 495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~- 573 (1284)
T 3g5u_A 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR- 573 (1284)
T ss_dssp HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-
Confidence 11111 23334444 34445566778999999999999999999999999999999999999999999998875
Q ss_pred CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 151 ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 151 ~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
+|+|+|++||+.. .+ ..||+|++|++ |++++.|+++++++
T Consensus 574 ~~~t~i~itH~l~-~i-~~~d~i~vl~~-G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 574 EGRTTIVIAHRLS-TV-RNADVIAGFDG-GVIVEQGNHDELMR 613 (1284)
T ss_dssp TTSEEEEECSCHH-HH-TTCSEEEECSS-SCCCCEECHHHHHH
T ss_pred CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 4899999999974 45 55999999987 89999999998865
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.9e-41 Score=320.56 Aligned_cols=180 Identities=27% Similarity=0.450 Sum_probs=146.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+++.++||||++.+|+. ||+||+.++.... ....
T Consensus 1065 vG~sGsGKSTl~~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~---~~~~- 1138 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSR---VVSY- 1138 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSSC-CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSS-BHHHHHTCCCSSC---CCCH-
T ss_pred ECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEcccCCHHHHHhceEEECCCCccccc-cHHHHHhccCCCC---CCCH-
Confidence 59999999999999999998 7999999999998642 356779999999988864 9999998753211 1111
Q ss_pred HHHHHHHHHHHHcCC-----------cccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy4235 78 ELNKTITRVMENLGI-----------NHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLK 146 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~ 146 (197)
+.+.+.++..++ +........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+
T Consensus 1139 ---~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~ 1215 (1284)
T 3g5u_A 1139 ---EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215 (1284)
T ss_dssp ---HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 223333333333 233344567899999999999999999999999999999999999999999998
Q ss_pred HHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHh
Q psy4235 147 QLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 147 ~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~ 193 (197)
++. +|+|+|++||+.. .+ ..||||++|++ |++++.|+++++++
T Consensus 1216 ~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~-G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1216 KAR-EGRTCIVIAHRLS-TI-QNADLIVVIQN-GKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHS-SSSCEEEECSCTT-GG-GSCSEEEEEET-BEEEEEECHHHHHH
T ss_pred HhC-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHHHHHh
Confidence 864 5899999999985 45 56999999997 99999999999875
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-41 Score=299.10 Aligned_cols=175 Identities=21% Similarity=0.149 Sum_probs=147.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+++ |++|+. +. ...++|++|+.......||.+++.... ... .. ..
T Consensus 384 iG~NGsGKSTLlk~l~Gl~~-p~~G~~------~~----~~~i~~~~q~~~~~~~~tv~e~~~~~~--~~~-~~----~~ 445 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGALK-PDEGQD------IP----KLNVSMKPQKIAPKFPGTVRQLFFKKI--RGQ-FL----NP 445 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSSC-CSBCCC------CC----SCCEEEECSSCCCCCCSBHHHHHHHHC--SST-TT----SH
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCCcC------cc----CCcEEEecccccccCCccHHHHHHHHh--hcc-cc----cH
Confidence 59999999999999999998 798862 21 235899999977666679999875422 111 11 12
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-ESRIVICAI 159 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~~~iii~t 159 (197)
..+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|+|++|
T Consensus 446 ~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivt 525 (608)
T 3j16_B 446 QFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525 (608)
T ss_dssp HHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999999864 589999999
Q ss_pred cCCcchHHhhcCeEEEEeC-CcEEEEecChhHHHhh
Q psy4235 160 HQPTSGVFEKFDTVSLLAH-GGLLAYHGQVSKVLKH 194 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~-gg~i~~~g~~~~~~~~ 194 (197)
||. +++..+|||+++|++ .|+++..|+|++++..
T Consensus 526 Hdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 526 HDF-IMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 997 478899999999985 2678889999887654
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.7e-40 Score=288.81 Aligned_cols=164 Identities=23% Similarity=0.248 Sum_probs=136.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEE---------EECCeeCCcc-----cccceEEEEecCCCCCCC---CCHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEI---------LLNGCPISRT-----VMSRISGYVAQQDFLIEE---LTVLEHLQ 63 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~q~~~~~~~---ltv~e~l~ 63 (197)
+||||||||||+|+|+|+++ |++|++ .++|.++... .....+++++|...+++. .|+.+++.
T Consensus 53 vG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~ 131 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK 131 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHh
Confidence 69999999999999999998 799985 3566554210 112347899987544332 38888875
Q ss_pred HHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4235 64 FMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN 143 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~ 143 (197)
... ..+++.++++.+|+....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+
T Consensus 132 ~~~------------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~ 199 (538)
T 1yqt_A 132 KAD------------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR 199 (538)
T ss_dssp HHC------------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhh------------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 310 01346789999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 144 LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 144 ~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+|++++++|.|||++||+. .++..+||++++|.+
T Consensus 200 ~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 200 AIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcC
Confidence 9999987899999999997 478899999999975
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.5e-40 Score=292.91 Aligned_cols=164 Identities=23% Similarity=0.264 Sum_probs=136.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEE---------EECCeeCCcc-----cccceEEEEecCCCCCC---CCCHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEI---------LLNGCPISRT-----VMSRISGYVAQQDFLIE---ELTVLEHLQ 63 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i---------~~~g~~~~~~-----~~~~~~~~v~q~~~~~~---~ltv~e~l~ 63 (197)
+||||||||||+|+|+|+++ |++|++ .++|.++... ..+..+++++|...+++ ..||.||+.
T Consensus 123 iG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 201 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHH
T ss_pred ECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhh
Confidence 69999999999999999998 799986 4566554221 11234788888743322 138999886
Q ss_pred HHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy4235 64 FMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN 143 (197)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~ 143 (197)
.. . . .+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 202 ~~---~---~------~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~ 269 (607)
T 3bk7_A 202 KV---D---E------VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR 269 (607)
T ss_dssp HT---C---C------SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred hh---H---H------HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 31 0 0 1346789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 144 LLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 144 ~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+|++++++|.|||++|||.. .+..+||++++|.+
T Consensus 270 ~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~ 303 (607)
T 3bk7_A 270 VIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred HHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence 99999877999999999974 78889999999975
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.7e-39 Score=289.03 Aligned_cols=187 Identities=21% Similarity=0.269 Sum_probs=122.2
Q ss_pred CCCCCCcHHHHH---------------------HHHhcCcCCCc-------eeEEEECCeeCCcccccceEEEEecCC--
Q psy4235 1 MSPSGAGKTTLL---------------------AALNKRVKGLV-------QGEILLNGCPISRTVMSRISGYVAQQD-- 50 (197)
Q Consensus 1 iG~nGaGKSTLl---------------------~~i~g~~~~~~-------~G~i~~~g~~~~~~~~~~~~~~v~q~~-- 50 (197)
+||||||||||+ +++.|+.. |+ .|.|.++|.+.... .++.++|++|..
T Consensus 50 iGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~~~~ 127 (670)
T 3ux8_A 50 TGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQKTTSRN-PRSTVGTVTEIYDY 127 (670)
T ss_dssp ECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSCC------CCBHHHHTTCC--
T ss_pred ECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCchhhcc-chhceeeeechhhh
Confidence 699999999998 88888777 56 45666776654321 122344444432
Q ss_pred -----------------CCCCCCCHHHHHHHHHHccCCccccHHHHH------HHHHHHHHHcCCccc-ccccCCCCCHH
Q psy4235 51 -----------------FLIEELTVLEHLQFMAKLTMDRRTTWLELN------KTITRVMENLGINHR-RQVQISGLSGG 106 (197)
Q Consensus 51 -----------------~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~l~~~-~~~~~~~LSgG 106 (197)
..++.+||.||+.++........ ...... ....++++.+||.+. +++++.+||||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGG 206 (670)
T 3ux8_A 128 LRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGG 206 (670)
T ss_dssp -----------------------CC---------------------------CHHHHHHHHHTTCTTCCTTCBGGGSCHH
T ss_pred HHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHH
Confidence 23467899999987532211100 000000 111245888999865 68999999999
Q ss_pred HHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eC
Q psy4235 107 QRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AH 178 (197)
Q Consensus 107 q~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~ 178 (197)
|||||+|||||+.+|+ +|||||||+|||+.++.+++++|++++++|.|||++|||.. . ...||++++| ++
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~ii~l~~g~~~~~ 284 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHG 284 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHHCSEEEEECSSSGGGC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H-HhhCCEEEEecccccccC
Confidence 9999999999999998 99999999999999999999999999888999999999974 4 5569999999 65
Q ss_pred CcEEEEecChhHHHh
Q psy4235 179 GGLLAYHGQVSKVLK 193 (197)
Q Consensus 179 gg~i~~~g~~~~~~~ 193 (197)
|++++.|+++++..
T Consensus 285 -G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 285 -GEVVAAGTPEEVMN 298 (670)
T ss_dssp -CSEEEEECHHHHHT
T ss_pred -CEEEEecCHHHHhc
Confidence 89999999998764
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.4e-39 Score=281.61 Aligned_cols=162 Identities=23% Similarity=0.219 Sum_probs=130.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEE-----------EECCeeCCcc-----cccceEEEEec----CCCCCCCCCHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEI-----------LLNGCPISRT-----VMSRISGYVAQ----QDFLIEELTVLE 60 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i-----------~~~g~~~~~~-----~~~~~~~~v~q----~~~~~~~ltv~e 60 (197)
+||||||||||+|+|+|+++ |++|+| .++|.++... .....+....| .+.++. .++.+
T Consensus 31 iGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 108 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK-GTVNE 108 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC-SBHHH
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc-CcHHH
Confidence 69999999999999999998 799998 5777665321 00112333333 333333 37877
Q ss_pred HHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy4235 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANN 140 (197)
Q Consensus 61 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~ 140 (197)
++... . ..+.+.++++.+++....++++.+|||||||||+|||||+.+|++|||||||++||+.++.+
T Consensus 109 ~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~ 176 (538)
T 3ozx_A 109 ILTKI---D---------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176 (538)
T ss_dssp HHHHH---C---------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred Hhhcc---h---------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 65421 0 11346789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 141 VVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 141 i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+.++|+++++ |.|||++||+. +.+..+||++++|.+
T Consensus 177 l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 177 MAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYG 212 (538)
T ss_dssp HHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEE
T ss_pred HHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecC
Confidence 9999999976 89999999997 478999999999975
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1e-36 Score=281.55 Aligned_cols=166 Identities=27% Similarity=0.367 Sum_probs=138.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+| |+| +|.+... ...++|++|+. .+++.+||.||+.+ ... ..
T Consensus 467 iGpNGsGKSTLLk~Lag-------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~----- 524 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIAN-------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT----- 524 (986)
T ss_dssp ECSTTSSHHHHHHHHHH-------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----
T ss_pred ECCCCCCHHHHHHHHhC-------CCc--CCCcccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----
Confidence 69999999999999995 222 3433321 12368999884 67889999999975 111 11
Q ss_pred HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 80 NKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 80 ~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.+++.++++.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .|.|+|++
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIiv 601 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITI 601 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEE
T ss_pred HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEE
Confidence 35688999999995 678999999999999999999999999999999999999999999999999988 58899999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEE-EecChhHHHh
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLA-YHGQVSKVLK 193 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~-~~g~~~~~~~ 193 (197)
||+. .++..+||++++|++ |+++ +.|+++++..
T Consensus 602 SHdl-~~l~~~adrii~L~~-G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 602 SHDS-VFLDNVCEYIINYEG-LKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSCH-HHHHHHCSEEEEEET-TEEEEEESCHHHHHH
T ss_pred ECCH-HHHHHhCCEEEEEEC-CeeecCCCCHHHHHh
Confidence 9997 478899999999987 7775 6899988754
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.8e-37 Score=275.62 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT 130 (197)
Q Consensus 55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt 130 (197)
.+||.||+.++... ...+++.+.++.+++.. ..++++.+|||||||||+|||||+.+| ++|||||||
T Consensus 504 ~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 504 DMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp TSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred hCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 57899998875321 11234567888899864 568999999999999999999999887 599999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE------eCCcEEEEecChhHHHh
Q psy4235 131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL------AHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~~ 193 (197)
+|||+.++..++++|++++++|.|||++|||+. . ...||++++| ++ |++++.|+++++.+
T Consensus 575 ~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~-G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 575 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRG-GQIVAVGTPEEVAE 640 (670)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGC-CEEEEEECHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCC-CEEEEecCHHHHHh
Confidence 999999999999999999888999999999974 4 4679999999 65 99999999998864
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-37 Score=273.31 Aligned_cols=166 Identities=22% Similarity=0.278 Sum_probs=128.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEE-----------EECCeeCCcc---cccce--EEEEecCCCC------CCCCCH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEI-----------LLNGCPISRT---VMSRI--SGYVAQQDFL------IEELTV 58 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i-----------~~~g~~~~~~---~~~~~--~~~v~q~~~~------~~~ltv 58 (197)
+||||||||||||+|+|+++ |++|+| .+.|.++... ...+. ..+.+|.... .+..++
T Consensus 109 vGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 187 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKV 187 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHH
T ss_pred ECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHH
Confidence 69999999999999999998 799987 2333322110 00111 1233332211 112245
Q ss_pred HHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy4235 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA 138 (197)
Q Consensus 59 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~ 138 (197)
.+++.... . ...+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 188 ~~~l~~~~--~--------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~ 257 (608)
T 3j16_B 188 GELLKLRM--E--------KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257 (608)
T ss_dssp HHHHHHHC--C--------SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred HHHHhhhh--h--------hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence 55443210 0 1125688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 139 NNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 139 ~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
..+.++|++++++|.|||++||+. +++..+||++++|.+
T Consensus 258 ~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~ 296 (608)
T 3j16_B 258 LNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYG 296 (608)
T ss_dssp HHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEES
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 999999999988899999999997 478999999999975
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.8e-37 Score=281.69 Aligned_cols=173 Identities=27% Similarity=0.328 Sum_probs=133.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCC----CCCCCHHHHHHHHHHccC------
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFL----IEELTVLEHLQFMAKLTM------ 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~----~~~ltv~e~l~~~~~~~~------ 70 (197)
+||||||||||+|+|+|+++ |++|+|+++|. ..++|++|++.. ....|+.+++.+......
T Consensus 705 iGpNGSGKSTLLklLaGll~-P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~ 775 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGELL-PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMD 775 (986)
T ss_dssp CSCCCHHHHHHHHHHTTSSC-CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTT
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCceEEEEcCc--------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhh
Confidence 69999999999999999998 79999999862 137888887421 223577777665321000
Q ss_pred ---------------------------------------------------------C-cc--------ccH--------
Q psy4235 71 ---------------------------------------------------------D-RR--------TTW-------- 76 (197)
Q Consensus 71 ---------------------------------------------------------~-~~--------~~~-------- 76 (197)
. .. ...
T Consensus 776 ~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~ 855 (986)
T 2iw3_A 776 RANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHS 855 (986)
T ss_dssp TTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHH
T ss_pred hhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHh
Confidence 0 00 000
Q ss_pred ------------------HHHHHHHHHHHHHcCCcc-c-ccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy4235 77 ------------------LELNKTITRVMENLGINH-R-RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY 136 (197)
Q Consensus 77 ------------------~~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~ 136 (197)
....+.+.++++.+||.. . .++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 856 ~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~ 935 (986)
T 2iw3_A 856 KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD 935 (986)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHH
T ss_pred hhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 001346788999999975 3 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecC
Q psy4235 137 SANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187 (197)
Q Consensus 137 ~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~ 187 (197)
+...+.+.|+++ +.+||++||+. +++..+||++++|.+ |+++..|+
T Consensus 936 s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 936 SLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEeCC
Confidence 999999988765 56999999996 478899999999987 88776654
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.1e-34 Score=262.01 Aligned_cols=128 Identities=27% Similarity=0.415 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT 130 (197)
Q Consensus 55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt 130 (197)
.+||.|++.|+... ....++.++|+.+||.. ..++++.+|||||||||+|||||+.+| ++|||||||
T Consensus 766 ~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 766 DMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp SSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred hCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 36788888775321 12245678999999975 468899999999999999999999875 799999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
+|||+.+++.+++.|++++++|.|||+++|++. . ...||+|++|. ++|++++.|++++++.
T Consensus 837 sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 837 VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 999999999999999999888999999999974 4 46699999992 3499999999999875
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=8.6e-34 Score=260.75 Aligned_cols=128 Identities=25% Similarity=0.378 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy4235 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPT 130 (197)
Q Consensus 55 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPt 130 (197)
.+||.|++.|+... . . ..++.++++.++|.. ..++++.+|||||||||+||++|+.+| ++|||||||
T Consensus 806 ~ltv~e~l~~~~~~-------~-~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 876 (972)
T 2r6f_A 806 DMTVEDALDFFASI-------P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876 (972)
T ss_dssp TSBHHHHHHHTCSC-------H-H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred hcCHHHHHHHHhcc-------h-h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 35777877764211 1 1 134568999999987 789999999999999999999999865 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 131 TGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 131 s~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
+|||+.++..++++|++++++|.|||++||++. . ...||++++|. ++|++++.|+++++..
T Consensus 877 sGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 877 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999999888999999999964 4 46899999993 3489999999998864
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.2e-33 Score=258.64 Aligned_cols=111 Identities=27% Similarity=0.351 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q psy4235 81 KTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTE---PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156 (197)
Q Consensus 81 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ii 156 (197)
+++.++++.++|.. ..++++.+|||||||||+||++|+.+ |++|||||||+|||+..+..+.++|++++++|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999987 46899999999999999999999996 799999999999999999999999999988899999
Q ss_pred EEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 157 CAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 157 i~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
++||+.. .+ ..||++++|. ++|++++.|+++++..
T Consensus 788 visHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 9999974 55 7899999993 3489999999998864
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3.9e-33 Score=257.09 Aligned_cols=127 Identities=24% Similarity=0.345 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCC
Q psy4235 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAVQLLTEP---QILFCDEPTT 131 (197)
Q Consensus 56 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~al~~~p---~llllDEPts 131 (197)
+||.|++.|+... . ....+.++++.++|.. ..++++.+|||||||||+||++|+.+| ++|||||||+
T Consensus 825 ltv~e~l~~~~~~-------~--~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTs 895 (993)
T 2ygr_A 825 MSIEEAAEFFEPI-------A--GVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTT 895 (993)
T ss_dssp SBHHHHHHHSTTC-------H--HHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTT
T ss_pred ccHHHHHHHhhcc-------h--HHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCC
Confidence 5677777654321 1 1234568999999987 689999999999999999999999865 9999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 132 GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 132 ~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
|||+.++..++++|++++++|.|||++||++. . ...||++++|. ++|++++.|+++++..
T Consensus 896 GLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 896 GLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-V-IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 99999999999999999888999999999964 4 47899999994 3499999999998864
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-36 Score=260.58 Aligned_cols=170 Identities=15% Similarity=0.079 Sum_probs=134.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee-E-EEECCeeCCcccccceEEEEecCCC---CCCCCCHHHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG-E-ILLNGCPISRTVMSRISGYVAQQDF---LIEELTVLEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~v~q~~~---~~~~ltv~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+|+|+|+.. |++| + |+++|. .++.++|+||+.. +++.+|+.||+ |+....... .
T Consensus 144 vGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~-~- 213 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA-T- 213 (460)
T ss_dssp EESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC-C-
T ss_pred ECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhh-cccccccCc-c-
Confidence 59999999999999999998 7999 9 999982 2466899999974 44567999988 543211110 0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHH
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ--LLTEPQI----LFCDE-PTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~a--l~~~p~l----lllDE-Pts~LD~~~~~~i~~~l~~l 148 (197)
..+.+.++++.+|+.+..+ +.+||||||||++|||| |+.+|++ ||||| ||++||+. .+.+.++++++
T Consensus 214 ---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~ 287 (460)
T 2npi_A 214 ---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL 287 (460)
T ss_dssp ---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh
Confidence 0123456778889987765 88999999999999999 9999999 99999 99999999 66666666553
Q ss_pred HhCCCEEEEEecCCc--c---hHHhhcCe-----EEEEe-CCcEEEEecChhHH
Q psy4235 149 ACESRIVICAIHQPT--S---GVFEKFDT-----VSLLA-HGGLLAYHGQVSKV 191 (197)
Q Consensus 149 ~~~~~~iii~th~~~--~---~~~~~~d~-----v~~l~-~gg~i~~~g~~~~~ 191 (197)
+.++|+++|+.. . .+..+||+ +++|+ + |+++ .|+++++
T Consensus 288 ---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~-G~iv-~g~~~~~ 336 (460)
T 2npi_A 288 ---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL-DGVS-AVDDVYK 336 (460)
T ss_dssp ---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC-TTCC-CCCHHHH
T ss_pred ---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC-CcEE-ECCHHHH
Confidence 678999999864 1 56689999 99998 6 7777 8888765
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=1.9e-32 Score=234.05 Aligned_cols=79 Identities=25% Similarity=0.333 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEE----
Q psy4235 103 LSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL---- 176 (197)
Q Consensus 103 LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l---- 176 (197)
||||||||++||++|+.+| ++|||||||++||+..+..+.+.|++++ ++.+||++||++ .+...||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999997 589999999996 356789999999
Q ss_pred eCCcEEEEe
Q psy4235 177 AHGGLLAYH 185 (197)
Q Consensus 177 ~~gg~i~~~ 185 (197)
.+ |+++..
T Consensus 373 ~~-G~~~~~ 380 (415)
T 4aby_A 373 ED-GRTVSH 380 (415)
T ss_dssp ET-TEEEEE
T ss_pred cC-CceEEE
Confidence 77 766543
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=1.2e-29 Score=214.25 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=77.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235 97 QVQISGLSGGQRKRLALAVQLL------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170 (197)
Q Consensus 97 ~~~~~~LSgGq~qrv~ia~al~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~ 170 (197)
++++.+||||||||++||+||+ .+|++|||||||++||+.++..+++.|++++++|.|||++||++. . ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhC
Confidence 5788999999999999999999 799999999999999999999999999999888999999999973 3 7889
Q ss_pred CeEEEEeCCcEEEE
Q psy4235 171 DTVSLLAHGGLLAY 184 (197)
Q Consensus 171 d~v~~l~~gg~i~~ 184 (197)
|++++|++ |+++.
T Consensus 352 d~~~~l~~-G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITG-GVVVN 364 (365)
T ss_dssp SCEEEEET-TEEC-
T ss_pred CEEEEEEC-CEEEe
Confidence 99999987 87753
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=5.7e-30 Score=212.73 Aligned_cols=94 Identities=28% Similarity=0.357 Sum_probs=78.4
Q ss_pred cccccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235 95 RRQVQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170 (197)
Q Consensus 95 ~~~~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~ 170 (197)
..+.++..||+|||||++||+||+ .+|++|||||||++||+..+..+.++|+++. ++.++|++||+. .+...|
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~ 288 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAA 288 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGC
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhC
Confidence 356778999999999999999997 5889999999999999999999999999985 478999999995 367889
Q ss_pred CeE--EEEeCCcEEEEecChhHH
Q psy4235 171 DTV--SLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 171 d~v--~~l~~gg~i~~~g~~~~~ 191 (197)
|++ ++|.+|...+...+.++.
T Consensus 289 d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 289 DLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp SEEEEEEESSSCEEEEECCC---
T ss_pred ceEEEEEEeCCEEEEEEEEcchh
Confidence 986 788876666666665554
No 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.96 E-value=5.1e-31 Score=201.97 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=97.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||+|+|+|++. |.++|.+.... ..++.+||++|+. ++.+++ + ....
T Consensus 6 ~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-------- 63 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-------- 63 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--------
T ss_pred ECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--------
Confidence 59999999999999999874 23344332111 2346689999975 222222 0 0000
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ-----LLTEPQILFCDE--PTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~a-----l~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~~ 150 (197)
+.-....++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+.+++++
T Consensus 64 ------------~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--- 128 (178)
T 1ye8_A 64 ------------FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--- 128 (178)
T ss_dssp ------------CCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---
T ss_pred ------------CCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---
Confidence 000135678889999999999999996 999999999999 9999999999999988865
Q ss_pred CCCEEEEEec--CCcchHHhhcCe
Q psy4235 151 ESRIVICAIH--QPTSGVFEKFDT 172 (197)
Q Consensus 151 ~~~~iii~th--~~~~~~~~~~d~ 172 (197)
.+.++|+++| |....+..+|++
T Consensus 129 ~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 129 PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred CCCeEEEEEccCCCchHHHHHHhc
Confidence 4667888886 344678888997
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=6.4e-32 Score=211.79 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=88.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC--cccccceEEEEecCCCCCCCCCHHHHH-HHHH----HccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRISGYVAQQDFLIEELTVLEHL-QFMA----KLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l-~~~~----~~~~~~~ 73 (197)
+||||||||||+|+|+|+ + |++|+|.. .++. ....++.+||+||++ .||+ .+.. .....
T Consensus 28 iG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~~~-- 93 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALRDM-- 93 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHTTT--
T ss_pred ECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHHHh--
Confidence 599999999999999999 7 79999843 2221 123456799999976 3444 2210 11100
Q ss_pred ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 74 TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
.. .+.+.++++. ++ |||||++|||||+.+|++|||||||++ ++..+.++|+++ +++.
T Consensus 94 ~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~ 150 (208)
T 3b85_A 94 VE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGS 150 (208)
T ss_dssp SC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTC
T ss_pred cc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCC
Confidence 00 1345566655 43 999999999999999999999999999 899999999998 6688
Q ss_pred EEEEEecCCc
Q psy4235 154 IVICAIHQPT 163 (197)
Q Consensus 154 ~iii~th~~~ 163 (197)
++| +||+..
T Consensus 151 tii-vtHd~~ 159 (208)
T 3b85_A 151 KMV-VTGDIT 159 (208)
T ss_dssp EEE-EEEC--
T ss_pred EEE-EECCHH
Confidence 888 999964
No 70
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.95 E-value=7.1e-31 Score=213.40 Aligned_cols=143 Identities=19% Similarity=0.251 Sum_probs=96.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+.. |++|+|.++|.++.....++.++|++|++.+++.+||.||+.|+...... ..+
T Consensus 8 vG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~~~---- 80 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--NCW---- 80 (270)
T ss_dssp EESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--TCS----
T ss_pred ECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--HHH----
Confidence 69999999999999999998 79999999999886555557799999999999999999999887543211 111
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++ ....++.+.+||||||||+++|||++. ++++|||+++||+.. .++++.+++. .++|++.|
T Consensus 81 ~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~ 148 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIA 148 (270)
T ss_dssp HHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEET
T ss_pred HHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEe
Confidence 22333333 345566788999999999999999875 999999999999987 4556666655 78888887
Q ss_pred CC
Q psy4235 161 QP 162 (197)
Q Consensus 161 ~~ 162 (197)
..
T Consensus 149 K~ 150 (270)
T 3sop_A 149 KA 150 (270)
T ss_dssp TG
T ss_pred cc
Confidence 64
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=2.4e-30 Score=221.04 Aligned_cols=152 Identities=10% Similarity=0.092 Sum_probs=120.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+|+|+|+.+ |++|+|.++|.+++ + .+|++|++ .++.+|+.||+.+... .
T Consensus 75 vG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t-----~-~~~v~q~~-~~~~ltv~D~~g~~~~------------~ 134 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVT-----M-ERHPYKHP-NIPNVVFWDLPGIGST------------N 134 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCT-TSTTSCCCCC---------C-CCEEEECS-SCTTEEEEECCCGGGS------------S
T ss_pred ECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecc-----e-eEEecccc-ccCCeeehHhhcccch------------H
Confidence 59999999999999999998 79999999997753 1 27899985 5778899888654310 1
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHH--HHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGG--QRKRLALAVQLLT----------EPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgG--q~qrv~ia~al~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
..+.++++.+++.+... .+. ||+| |+||+.||++|+. +|++++|||||+|||+..+.++.+.++++
T Consensus 135 ~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 24678899999876533 333 9999 9999999999999 99999999999999999999999999998
Q ss_pred H-----hCC----CEEEEEecCCcc-hHHhhcCeEE
Q psy4235 149 A-----CES----RIVICAIHQPTS-GVFEKFDTVS 174 (197)
Q Consensus 149 ~-----~~~----~~iii~th~~~~-~~~~~~d~v~ 174 (197)
. +.| .++++++|.... .+..+||++.
T Consensus 213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 4 222 567788887642 2788888874
No 72
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=5.8e-27 Score=216.16 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=125.2
Q ss_pred HHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCc--ccc---HHHHHHHHHHH
Q psy4235 12 LAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDR--RTT---WLELNKTITRV 86 (197)
Q Consensus 12 l~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~--~~~---~~~~~~~~~~~ 86 (197)
..|..+.+. |..++|+++|.++.. +..+|+.+++.|........ ... .........+.
T Consensus 385 ~~C~g~rl~-~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 385 SVCGGRRLN-REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTTCSCCBC-TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred hhcccccCC-hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence 344445566 688999999987632 33457777777654332111 000 00111234567
Q ss_pred HHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235 87 MENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 87 l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~ 163 (197)
+..+||... +++++.+|||||+|||+|||||+.+|+ +|||||||+|||+..+.+++++|++++++|.|||+++||..
T Consensus 448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE 527 (916)
T ss_dssp HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred HHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 888999865 689999999999999999999999887 99999999999999999999999999888999999999963
Q ss_pred chHHhhcCeEEEE------eCCcEEEEecChhHHHh
Q psy4235 164 SGVFEKFDTVSLL------AHGGLLAYHGQVSKVLK 193 (197)
Q Consensus 164 ~~~~~~~d~v~~l------~~gg~i~~~g~~~~~~~ 193 (197)
.+ ..||++++| ++ |++++.|++++++.
T Consensus 528 -~~-~~aD~ii~lgpgag~~~-G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 528 -VI-RNADHIIDIGPGGGTNG-GRVVFQGTVDELLK 560 (916)
T ss_dssp -HH-HTCSEEEEEESSSGGGC-SEEEEEECHHHHHH
T ss_pred -HH-HhCCEEEEEcCCcccCC-CEEEEeechhhhhc
Confidence 44 569999999 54 99999999998864
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.93 E-value=6.8e-31 Score=205.20 Aligned_cols=164 Identities=11% Similarity=0.029 Sum_probs=117.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccC---CccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM---DRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~ 77 (197)
+||||||||||+|+|+|+++ ...+.+.+.+.+.. ...++.++|+||++.+|+.+|+.+++.+...... .......
T Consensus 26 ~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~ 103 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQ 103 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHH
T ss_pred ECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHH
Confidence 69999999999999999985 33333222221111 1123558999999888888888777642211110 0112233
Q ss_pred HHHHHHHHH------HHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC----CHHHHHHHHHHHHH
Q psy4235 78 ELNKTITRV------MENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGL----DSYSANNVVNLLKQ 147 (197)
Q Consensus 78 ~~~~~~~~~------l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~L----D~~~~~~i~~~l~~ 147 (197)
..++.+.+. ++.+++....++++..|| +|+.+|++++|||||+++ |+..++++.+.+++
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~ 172 (207)
T 1znw_A 104 PVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIE 172 (207)
T ss_dssp HHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344555555 666777777788888998 999999999999999998 78899999999999
Q ss_pred HHh-CCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 148 LAC-ESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 148 l~~-~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+++ .+.++|++||++ +++..+||++++|..
T Consensus 173 l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 173 LAAQGDFDKVVVNRRL-ESACAELVSLLVGTA 203 (207)
T ss_dssp HHGGGGSSEEEECSSH-HHHHHHHHHHHC---
T ss_pred HhhhccCcEEEECCCH-HHHHHHHHHHHHhcc
Confidence 975 488999999997 479999999998854
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.93 E-value=7.8e-28 Score=198.34 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=121.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cc--cceEEEEecCCC-CCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VM--SRISGYVAQQDF-LIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+++|+|+++ |++|+|.++|.++... .+ +..++|++|++. +++.+|++||+.++.....
T Consensus 106 vG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~ 184 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGY 184 (302)
T ss_dssp ECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCC
Confidence 69999999999999999998 6899999999987542 12 235899999988 8999999999987643211
Q ss_pred CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
. ..+++.+|+.+..++++.+|| +||++||||++.+|+ +|+|| ||+|||+..+. +++
T Consensus 185 d------------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~ 242 (302)
T 3b9q_A 185 D------------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REF 242 (302)
T ss_dssp S------------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHH
T ss_pred c------------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHH
Confidence 0 124566788777788899999 999999999999999 99999 99999998652 445
Q ss_pred Hh-CCCEEEEEecCCc--------chHHhhcCeEEEEeCC
Q psy4235 149 AC-ESRIVICAIHQPT--------SGVFEKFDTVSLLAHG 179 (197)
Q Consensus 149 ~~-~~~~iii~th~~~--------~~~~~~~d~v~~l~~g 179 (197)
.+ .+.++|++||... ..+....+.+.++..|
T Consensus 243 ~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 243 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp HHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred HHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 43 4889999999431 2344567788888873
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=2.7e-27 Score=179.80 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=61.9
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCC
Q psy4235 90 LGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY----------------SANNVVNLLKQLACESR 153 (197)
Q Consensus 90 ~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~----------------~~~~i~~~l~~l~~~~~ 153 (197)
.+.....+ .....|+|||||++||||++.+|++|+|||||++||+. .+..+.+.|++++++|.
T Consensus 72 ~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~ 150 (171)
T 4gp7_A 72 LGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGF 150 (171)
T ss_dssp TTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTC
T ss_pred CCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCC
Confidence 34443333 33456999999999999999999999999999999999 56889999998887799
Q ss_pred EEEEEecCCc
Q psy4235 154 IVICAIHQPT 163 (197)
Q Consensus 154 ~iii~th~~~ 163 (197)
|+|++||++.
T Consensus 151 tvi~vtH~~~ 160 (171)
T 4gp7_A 151 RYVYILNSPE 160 (171)
T ss_dssp SEEEEECSHH
T ss_pred cEEEEeCCHH
Confidence 9999999964
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=1.4e-24 Score=199.82 Aligned_cols=138 Identities=22% Similarity=0.380 Sum_probs=113.0
Q ss_pred CCCCCHHHHHHHHHHccCCcc---c---cHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy4235 53 IEELTVLEHLQFMAKLTMDRR---T---TWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QI 123 (197)
Q Consensus 53 ~~~ltv~e~l~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~l 123 (197)
+..+||.|++.|+..+..... . ...+..+++ +.+..+||... +++++.+|||||+|||+||++|..+| ++
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 456899999999766542210 0 002234444 45889999865 79999999999999999999999985 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 124 lllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
|||||||++||+...+++++.|+++++.|.|||+++|+.. . ...||+|++|. ++|++++.|+++++..
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 9999999999999999999999999888999999999963 4 46799999993 3599999999988754
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=9.5e-27 Score=195.69 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=122.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cc--cceEEEEecCCC-CCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VM--SRISGYVAQQDF-LIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~--~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+++|+|+++ +++|+|.++|.++.+. .+ +..++|++|++. ++|.+|+++|+.++.....
T Consensus 163 vG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~ 241 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGY 241 (359)
T ss_dssp ECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTC
T ss_pred EcCCCChHHHHHHHHHhhcc-ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCC
Confidence 69999999999999999998 6899999999987542 12 235899999988 8999999999987643211
Q ss_pred CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
. ..+++.+|+.+..++++.+|| +||++||||++.+|+ +|+|| ||+|||+..+. +.+
T Consensus 242 d------------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~ 299 (359)
T 2og2_A 242 D------------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REF 299 (359)
T ss_dssp S------------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHH
T ss_pred H------------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHH
Confidence 0 124556788777788899999 999999999999999 99999 99999998653 344
Q ss_pred Hh-CCCEEEEEecCCc--------chHHhhcCeEEEEeC
Q psy4235 149 AC-ESRIVICAIHQPT--------SGVFEKFDTVSLLAH 178 (197)
Q Consensus 149 ~~-~~~~iii~th~~~--------~~~~~~~d~v~~l~~ 178 (197)
.+ .+.++|++||... ..+....+.|.++..
T Consensus 300 ~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 300 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeC
Confidence 43 4889999999421 234456778888877
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.91 E-value=3.3e-24 Score=179.17 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=72.3
Q ss_pred ccccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhh
Q psy4235 96 RQVQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169 (197)
Q Consensus 96 ~~~~~~~LSgGq~q------rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~ 169 (197)
.++++.+||||||| |+++|++|+.+|++|||||||++||+..+..+.++|+++..++.++|++||+. .+...
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHh
Confidence 46788999999999 66777888889999999999999999999999999999877788999999994 46789
Q ss_pred cCeEEEEeC
Q psy4235 170 FDTVSLLAH 178 (197)
Q Consensus 170 ~d~v~~l~~ 178 (197)
||++++|..
T Consensus 320 ~d~~~~l~~ 328 (339)
T 3qkt_A 320 ADHVIRISL 328 (339)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999998863
No 79
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=2.8e-24 Score=198.40 Aligned_cols=140 Identities=23% Similarity=0.375 Sum_probs=113.4
Q ss_pred CCCCCCCHHHHHHHHHHccCCccc------cHHHHHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhC--C
Q psy4235 51 FLIEELTVLEHLQFMAKLTMDRRT------TWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTE--P 121 (197)
Q Consensus 51 ~~~~~ltv~e~l~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~--p 121 (197)
..+..+||.|++.|+..+...... ...+..+++ +.+..+||... +++++.+|||||+|||+||++|..+ |
T Consensus 464 ~q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 464 AEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp GCSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HHHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 446678999999985443221100 002233444 45788999865 7999999999999999999999998 5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 122 QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 122 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
++|||||||++||+...+++++.|+++++.|.|||+++|+.. . ...||+|++|. ++|++++.|+++++..
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 999999999999999999999999999988999999999963 4 56899999993 3599999999998765
No 80
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.90 E-value=1.7e-23 Score=155.55 Aligned_cols=80 Identities=28% Similarity=0.368 Sum_probs=73.6
Q ss_pred ccccCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhh
Q psy4235 96 RQVQISGLSGGQRKRLALA------VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169 (197)
Q Consensus 96 ~~~~~~~LSgGq~qrv~ia------~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~ 169 (197)
.++++.+||||||||++|| |||+.+|+++||||||++||+.++..+.+.|+++.+++.++|++||+. .+...
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHh
Confidence 5678999999999999876 899999999999999999999999999999999877789999999996 36789
Q ss_pred cCeEEEEe
Q psy4235 170 FDTVSLLA 177 (197)
Q Consensus 170 ~d~v~~l~ 177 (197)
||++++|.
T Consensus 129 ~d~ii~l~ 136 (148)
T 1f2t_B 129 ADHVIRIS 136 (148)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999994
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=3.1e-26 Score=189.59 Aligned_cols=149 Identities=11% Similarity=0.011 Sum_probs=107.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|+++ |+.|. +.++|++|++.+++. |+.||+.+...... ......
T Consensus 96 ~G~sGsGKSTL~~~L~gll~-~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~----~~~~d~ 155 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQALLA-RWDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGF----PESYNR 155 (312)
T ss_dssp ECCTTSCHHHHHHHHHHHHH-TSTTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTS----GGGBCH
T ss_pred ECCCCchHHHHHHHHHhhcc-ccCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHhcCC----ChHHHH
Confidence 59999999999999999988 55442 457999999998888 99999865321111 111123
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.++++.++ ....+.++..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+.-..+|+++|
T Consensus 156 ~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a 226 (312)
T 3aez_A 156 RALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDA 226 (312)
T ss_dssp HHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEEC
Confidence 56778888887 555567888999999999999999999999999999999998621 122322235567777
Q ss_pred CCcchHHhhcCeEEEEeC
Q psy4235 161 QPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 161 ~~~~~~~~~~d~v~~l~~ 178 (197)
+........++|.+.+.+
T Consensus 227 ~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 227 RIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 654334445556544433
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=4.3e-24 Score=177.97 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=89.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |++|.|.++|.+.... ..++.++|+++
T Consensus 177 ~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~~~~~~~i~~~~g------------------------------- 224 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVFKHHKNYTQLFFG------------------------------- 224 (330)
T ss_dssp EESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCCSSCSSEEEEECB-------------------------------
T ss_pred ECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeeccccccchhEEEEEeC-------------------------------
Confidence 59999999999999999998 7999999998652111 12233444320
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
|||+||++||+||..+|+++++||||+ .++.+.|+.+...+.++|+++
T Consensus 225 -------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~ 272 (330)
T 2pt7_A 225 -------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTL 272 (330)
T ss_dssp -------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEE
T ss_pred -------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEE
Confidence 899999999999999999999999998 245677777765445799999
Q ss_pred cCCcchHHhhcCeEEEEeCC
Q psy4235 160 HQPTSGVFEKFDTVSLLAHG 179 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~g 179 (197)
|+.. +...|||+++|.+|
T Consensus 273 H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 273 HAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ECSS--HHHHHHHHHHHHHT
T ss_pred cccH--HHHHhhhheehhcC
Confidence 9964 68889999999873
No 83
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=6.5e-27 Score=192.66 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=101.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHH-HHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE-HLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e-~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|++ +|+| ++|++|++.+|+. |+++ |+.+.. ...
T Consensus 132 vGpsGsGKSTLl~lL~gl~----~G~I---------------~~~v~q~~~lf~~-ti~~~ni~~~~------~~~---- 181 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHFL----GGSV---------------LSFANHKSHFWLA-SLADTRAALVD------DAT---- 181 (305)
T ss_dssp ECSSSSSHHHHHHHHHHHH----TCEE---------------ECGGGTTSGGGGG-GGTTCSCEEEE------EEC----
T ss_pred ECCCCCcHHHHHHHHhhhc----CceE---------------EEEecCccccccc-cHHHHhhccCc------ccc----
Confidence 5999999999999999987 6887 3577888887775 7776 776531 111
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
..+.+.++.+ +.+..+ +..|||||||| ||||+.+|+||| ||+||+.+...+.. ++
T Consensus 182 -~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------lt 236 (305)
T 2v9p_A 182 -HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LH 236 (305)
T ss_dssp -HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GT
T ss_pred -HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------Hh
Confidence 1344555553 443344 78999999999 999999999999 99999999888752 17
Q ss_pred cCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
|++. ....||++ +|++ |++++.|+++++...
T Consensus 237 H~~~--~~~~aD~i-vl~~-G~iv~~g~~~el~~~ 267 (305)
T 2v9p_A 237 SRVQ--TFRFEQPC-TDES-GEQPFNITDADWKSF 267 (305)
T ss_dssp TTEE--EEECCCCC-CCC----CCCCCCHHHHHHH
T ss_pred CCHH--HHHhCCEE-EEeC-CEEEEeCCHHHHHHH
Confidence 7753 46889999 9987 999999999887433
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=5.8e-23 Score=180.72 Aligned_cols=144 Identities=14% Similarity=0.036 Sum_probs=111.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++++|... +. |+ +.+.|++|++. ..+.++.. ... ..
T Consensus 287 ~G~~GsGKSTLl~~l~g~~~-~~-G~--------------~vi~~~~ee~~----~~l~~~~~---~~g----~~----- 334 (525)
T 1tf7_A 287 TGATGTGKTLLVSRFVENAC-AN-KE--------------RAILFAYEESR----AQLLRNAY---SWG----MD----- 334 (525)
T ss_dssp EECTTSSHHHHHHHHHHHHH-TT-TC--------------CEEEEESSSCH----HHHHHHHH---TTS----CC-----
T ss_pred EeCCCCCHHHHHHHHHHHHH-hC-CC--------------CEEEEEEeCCH----HHHHHHHH---HcC----CC-----
Confidence 49999999999999999876 33 42 12456676542 12233221 111 11
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCCEE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY-----SANNVVNLLKQLACESRIV 155 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~-----~~~~i~~~l~~l~~~~~~i 155 (197)
+.+ +...|+....+.++.+||+||+||+.+|+++..+|++||+| ||++||+. .+..+.++++.+++.|.|+
T Consensus 335 --~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tv 410 (525)
T 1tf7_A 335 --FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITG 410 (525)
T ss_dssp --HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred --HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEE
Confidence 112 23467777788889999999999999999999999999999 99999999 9999999999998889999
Q ss_pred EEEecCCc---------chHHhhcCeEEEEeCCcE
Q psy4235 156 ICAIHQPT---------SGVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 156 ii~th~~~---------~~~~~~~d~v~~l~~gg~ 181 (197)
|+++|+.. ..+..+||++++|.+ |+
T Consensus 411 ilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 411 LFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp EEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred EEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 99999971 356789999999987 54
No 85
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=1.1e-22 Score=186.30 Aligned_cols=112 Identities=25% Similarity=0.367 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 79 LNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
..+++. .+..+||.+. +++++.+|||||+|||+||++|+.+| ++|||||||++||+...++++++|+++++.|.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 344554 6788999865 79999999999999999999999999 5999999999999999999999999998889999
Q ss_pred EEEecCCcchHHhhcCeEEEEe-----CCcEEEEecChhHHHh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLA-----HGGLLAYHGQVSKVLK 193 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~-----~gg~i~~~g~~~~~~~ 193 (197)
|+++|+.. +...||+|++|. ++|++++.|+++++.+
T Consensus 435 IvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 435 FVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp EEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred EEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 99999973 457899999993 3589999999988754
No 86
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=2.5e-25 Score=191.71 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=124.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe---eCCc--------ccccceEEEEecC-CCCCCCCCHHHHHHHHHHc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC---PISR--------TVMSRISGYVAQQ-DFLIEELTVLEHLQFMAKL 68 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~---~~~~--------~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~ 68 (197)
+||||||||||+++|+|+.+ +++|.|.++|+ ++.. ..+++.++|++|+ ..+++.+|+.+|+.+.+..
T Consensus 163 vG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~ 241 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAED 241 (438)
T ss_dssp EECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcccC-CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999999998 79999999998 4432 1245679999995 5667888999998876532
Q ss_pred cCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 69 TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
.... .-......+ .+..||+|| ||++|| +.+|++ |+|||+.....+.+++.++
T Consensus 242 ~~~~----------------~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 242 FRDR----------------GQHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp HHTT----------------TCEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred HHhC----------------CCCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence 1100 000111122 266799999 999999 888887 9999999999999999998
Q ss_pred Hh---C-CC-----EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHH
Q psy4235 149 AC---E-SR-----IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVL 192 (197)
Q Consensus 149 ~~---~-~~-----~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~ 192 (197)
.+ + |. ||++++||.. ..+||++++|.+ |+++..+++.++.
T Consensus 295 ~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 295 GNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRLAEAG 343 (438)
T ss_dssp SCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHHHHTT
T ss_pred HhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCHHHcc
Confidence 76 3 53 8999999974 578999999987 9999888887654
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.87 E-value=3.1e-23 Score=169.73 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=105.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|... +.+| .|.+.+.........+++.++.+...+ ++.+++.... . .....
T Consensus 41 ~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~l~~~~-~------~~~~~ 108 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDSLKREI-I------ENGKF 108 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHHHHHHH-H------HHTHH
T ss_pred EeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccccccCC-C------CHHHH
Confidence 59999999999999999987 5767 676554443332223333333333221 2333443221 1 01112
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQ-RKRLALAVQLLTEPQILFCDEPTT---G---LDS-YSANNVVNLLKQLACE 151 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq-~qrv~ia~al~~~p~llllDEPts---~---LD~-~~~~~i~~~l~~l~~~ 151 (197)
.+.+.++++..++. ....+.++|.++ +||+. |+++..+|+++|+||||+ + +|. .....+.+.|++++++
T Consensus 109 ~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~ 185 (296)
T 1cr0_A 109 DQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS 185 (296)
T ss_dssp HHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 23344454433331 233456789998 66776 999999999999999999 5 555 6678899999999765
Q ss_pred -CCEEEEEecCC-cc--------------------hHHhhcCeEEEEeCCcE
Q psy4235 152 -SRIVICAIHQP-TS--------------------GVFEKFDTVSLLAHGGL 181 (197)
Q Consensus 152 -~~~iii~th~~-~~--------------------~~~~~~d~v~~l~~gg~ 181 (197)
+.+||+++|+. .+ .+.+.||++++|.+ |.
T Consensus 186 ~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~ 236 (296)
T 1cr0_A 186 TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQ 236 (296)
T ss_dssp HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C-
T ss_pred hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Cc
Confidence 89999999995 12 57789999999987 44
No 88
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.86 E-value=1.6e-23 Score=172.69 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=102.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------c--cceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------M--SRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~--~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+++ |++|+|.+.|.++.... + +..++|++|++.++|.+++.+|+.++......
T Consensus 108 vG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d 186 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYD 186 (304)
T ss_dssp ECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCS
T ss_pred ECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCC
Confidence 59999999999999999998 69999999999874321 1 23589999999999999999999865321100
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
..+++..|+.+.....+.+| ++||++||||++.+|+.++| .||+.+...+.+.++.+.+.
T Consensus 187 ------------~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~ 246 (304)
T 1rj9_A 187 ------------LLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEA 246 (304)
T ss_dssp ------------EEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHH
T ss_pred ------------EEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHH
Confidence 01222334433333334444 48999999999999995444 55555556677777777654
Q ss_pred -CCEEEEEecCC
Q psy4235 152 -SRIVICAIHQP 162 (197)
Q Consensus 152 -~~~iii~th~~ 162 (197)
+.++|++||+.
T Consensus 247 ~~~t~iivTh~d 258 (304)
T 1rj9_A 247 VGLTGVIVTKLD 258 (304)
T ss_dssp HCCSEEEEECTT
T ss_pred cCCcEEEEECCc
Confidence 88999999985
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.85 E-value=2.5e-23 Score=165.29 Aligned_cols=153 Identities=14% Similarity=0.030 Sum_probs=95.5
Q ss_pred CCCCCCcHHHHHHHHh--cCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALN--KRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~--g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+ |+.. +..|.+++++...... ...+.++|.+|+...++.+++.++........
T Consensus 36 ~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------- 107 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP------- 107 (251)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------------
T ss_pred EeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc-------
Confidence 5999999999999999 6634 4567777777553221 12234677777654444444444332211000
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhC
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD-----SYSANNVVNLLKQLACE 151 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD-----~~~~~~i~~~l~~l~~~ 151 (197)
..... ......+.++......+..-..+|+++++||||+++| +..++.+.++++.++++
T Consensus 108 ---~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~ 171 (251)
T 2ehv_A 108 ---SEEKF-------------VLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM 171 (251)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH
T ss_pred ---cccce-------------eccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC
Confidence 00000 0111223444444444444568999999999999997 66667799999999888
Q ss_pred CCEEEEEecCCcchH---------Hhhc-CeEEEEeC
Q psy4235 152 SRIVICAIHQPTSGV---------FEKF-DTVSLLAH 178 (197)
Q Consensus 152 ~~~iii~th~~~~~~---------~~~~-d~v~~l~~ 178 (197)
|.|||++||+.. .+ ..+| |++++|+.
T Consensus 172 g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 172 GVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCeEEEEECCCC-CCcccccccChhhEeeeEEEEEee
Confidence 999999999975 44 5788 99999963
No 90
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.85 E-value=9.7e-27 Score=183.32 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=106.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc----cccceEEEEecCCCCCCCCCH-HHHHHHHHHccCC-ccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT----VMSRISGYVAQQDFLIEELTV-LEHLQFMAKLTMD-RRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~~ltv-~e~l~~~~~~~~~-~~~ 74 (197)
+||||||||||+|+|+|++ | |+|.+ |.++... ..++.++|+||++.+|+.++. .+++.+. ..... ...
T Consensus 29 vGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~g~ 102 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYD-NYANNFYGT 102 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEE-EETTEEEEE
T ss_pred ECCCCCCHHHHHHHHHhhC--C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhh-hcccccCCC
Confidence 5999999999999999986 3 99999 7765322 123568999998776654431 1111100 00000 011
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL-----AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~i-----a~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
. ...++++++...+. ..+ .+|||||+||++| +++++.+|++++||||++++|..+...+.+.+..+.
T Consensus 103 ~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 103 L----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp E----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred c----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1 13456666654321 222 5799999999999 899999999999999999999999999988887764
Q ss_pred h-------CCCEEEEEecCCcchHHhhcCeEE
Q psy4235 150 C-------ESRIVICAIHQPTSGVFEKFDTVS 174 (197)
Q Consensus 150 ~-------~~~~iii~th~~~~~~~~~~d~v~ 174 (197)
. .....|+++|+. +++...+++++
T Consensus 175 ~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 175 IELHEANLLNFNLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTTSCCSEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHhhcccCCCEEEECCCH-HHHHHHHHHHH
Confidence 3 234556666664 34555555543
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=1.6e-24 Score=190.61 Aligned_cols=148 Identities=13% Similarity=0.055 Sum_probs=105.2
Q ss_pred CCCCCCcHHHHHHH--HhcCcCCCceeEEEECCeeCCcc--cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAA--LNKRVKGLVQGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~--i~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++ ++|+.+ |++|.|+++|++.... ...+.+||++|++...+. +.+ ......
T Consensus 45 ~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~~~--- 111 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDASPD--- 111 (525)
T ss_dssp EESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECCCC---
T ss_pred EcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE---EecCcc---
Confidence 59999999999999 689987 6899999999884221 223567999997542211 100 000000
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT-----GLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~~ 151 (197)
....++++.+++.+..++.+..||+| +|+++++||||+ ++|+..++.+.++++.+++.
T Consensus 112 ----~~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~ 174 (525)
T 1tf7_A 112 ----PEGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI 174 (525)
T ss_dssp ----SSCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----cchhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC
Confidence 00112334445555556666677776 478999999997 46999999999999999888
Q ss_pred CCEEEEEecCCcch--------HHhhcCeEEEEeC
Q psy4235 152 SRIVICAIHQPTSG--------VFEKFDTVSLLAH 178 (197)
Q Consensus 152 ~~~iii~th~~~~~--------~~~~~d~v~~l~~ 178 (197)
|.|+|+++|+..+. +..+||++++|++
T Consensus 175 g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 175 GATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 99999999998532 3456999999986
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.83 E-value=2.9e-22 Score=187.29 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=97.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+| |++. + +.+..+||||++. .+||.+++.
T Consensus 795 tGpNgsGKSTlLr~i-Gl~~-~----------------~aqiG~~Vpq~~~---~l~v~d~I~----------------- 836 (1022)
T 2o8b_B 795 TGPNMGGKSTLMRQA-GLLA-V----------------MAQMGCYVPAEVC---RLTPIDRVF----------------- 836 (1022)
T ss_dssp ECCTTSSHHHHHHHH-HHHH-H----------------HHTTTCCEESSEE---EECCCSBEE-----------------
T ss_pred ECCCCCChHHHHHHH-HHHH-H----------------HhheeEEeccCcC---CCCHHHHHH-----------------
Confidence 599999999999999 9876 2 1233349999753 345555431
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA-NNVVNLLKQLACE-SRIVICA 158 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~-~~i~~~l~~l~~~-~~~iii~ 158 (197)
.++|+.+...+..+.+|+++++ +++|++++.+|+++|||||++|+|+... ..++.+|+.++++ +.++|++
T Consensus 837 -------~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~ 908 (1022)
T 2o8b_B 837 -------TRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS 908 (1022)
T ss_dssp -------EECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred -------HHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 0123333333445678887775 9999999999999999999999999985 5578999999876 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLA 183 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~ 183 (197)
||+. +.+...+|++.++ + |++.
T Consensus 909 TH~~-el~~~~~d~~~v~-~-g~~~ 930 (1022)
T 2o8b_B 909 THYH-SLVEDYSQNVAVR-L-GHMA 930 (1022)
T ss_dssp CCCH-HHHHHTSSCSSEE-E-EEEE
T ss_pred eCCH-HHHHHhCCcceee-c-CeEE
Confidence 9996 4677889998877 3 6665
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.83 E-value=2.4e-24 Score=167.82 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=108.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCC--CCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLI--EELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|++. | .++|++|++.++ ..+|+.++..+.... ....
T Consensus 12 ~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~--~~~~---- 65 (211)
T 3asz_A 12 AGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYDH--PDAF---- 65 (211)
T ss_dssp EESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS--GGGB----
T ss_pred ECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCCC--hhhh----
Confidence 59999999999999999876 3 378999998776 567898886543211 1111
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHH
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQR----KRLALAVQLLTEPQILFCDEPTTG-------LDSYSANNVVNLLKQ 147 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~----qrv~ia~al~~~p~llllDEPts~-------LD~~~~~~i~~~l~~ 147 (197)
..+.+.+.++.+++.+..+.++.++|+|++ ||+++|++++.+|+++++||||++ ||+....++.+.+++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 234567778888887777788999999974 788999999999999999999999 999999999999887
Q ss_pred H-HhCCCEEEEEecCC
Q psy4235 148 L-ACESRIVICAIHQP 162 (197)
Q Consensus 148 l-~~~~~~iii~th~~ 162 (197)
. .++|.+++.++|+.
T Consensus 146 ~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 146 DVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHSCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHH
Confidence 5 45688888888874
No 94
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.82 E-value=1.1e-22 Score=181.73 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=101.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC------cccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS------RTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+|||||||||||++|+|+..|.++|.|+++|.++. ...+++.++|++|++.+++.+||.+|+.+.........
T Consensus 51 vG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~- 129 (608)
T 3szr_A 51 IGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG- 129 (608)
T ss_dssp CCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-
T ss_pred ECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-
Confidence 79999999999999999987337999999999862 12456779999999999999999999987543210000
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHH
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP------TTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP------ts~LD~~~~~~i~~~l~~l 148 (197)
.++.. +++.++.+....|+++|+||| |+|||+..+.++.++++++
T Consensus 130 ---------------~~~s~--------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 130 ---------------MGISH--------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp ---------------SCCCS--------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred ---------------cccch--------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 01110 112222233458999999999 9999999999999999997
Q ss_pred HhC--CCEEEEEecCCcc------hHHhh-----cCeEEEEeCCcEEEEecChh
Q psy4235 149 ACE--SRIVICAIHQPTS------GVFEK-----FDTVSLLAHGGLLAYHGQVS 189 (197)
Q Consensus 149 ~~~--~~~iii~th~~~~------~~~~~-----~d~v~~l~~gg~i~~~g~~~ 189 (197)
..+ +.++++++|+... .+... ...++++.+ +-++..|+.+
T Consensus 181 l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~~ 233 (608)
T 3szr_A 181 IQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTED 233 (608)
T ss_dssp TTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSSTT
T ss_pred HhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccHH
Confidence 433 5677888887541 11111 234667766 5554555543
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.82 E-value=6.8e-22 Score=155.13 Aligned_cols=139 Identities=19% Similarity=0.103 Sum_probs=88.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-C-----ceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-L-----VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~-----~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||+++|+|...+ + ..|.+++++.+... .+.+++++|...+++. |+.+|+.+..
T Consensus 31 ~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~~~~-------- 98 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIYVAR-------- 98 (231)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEEEEE--------
T ss_pred ECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEEEEe--------
Confidence 599999999999999996542 2 34477777754211 1235666666655554 5555543211
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHH-HHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH---------
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGG-QRKRLALAVQLL-------TEPQILFCDEPTTGLDSYS--------- 137 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG-q~qrv~ia~al~-------~~p~llllDEPts~LD~~~--------- 137 (197)
..+.+ +++.+..+++++ .+|+++++|||++++|+..
T Consensus 99 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r 151 (231)
T 4a74_A 99 ---------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 151 (231)
T ss_dssp ---------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred ---------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence 11112 222233344444 4999999999999999842
Q ss_pred ---HHHHHHHHHHHHhC-CCEEEEEecCCc---chHHhhcCeEEEEeC
Q psy4235 138 ---ANNVVNLLKQLACE-SRIVICAIHQPT---SGVFEKFDTVSLLAH 178 (197)
Q Consensus 138 ---~~~i~~~l~~l~~~-~~~iii~th~~~---~~~~~~~d~v~~l~~ 178 (197)
..++++.|.+++++ +.|||+++|... ..+...||+++++++
T Consensus 152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 23678888877654 899999999532 137889999999986
No 96
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.82 E-value=1.9e-23 Score=172.02 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=82.2
Q ss_pred CCCCCCcHHHHHHHHhcC-cCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKR-VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|. .. |++| |.++|.++......+.++|++|.+.++..+|++|++.++......
T Consensus 24 vG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~-------- 93 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR-------- 93 (301)
T ss_dssp EEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEEEC-----------------
T ss_pred ECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH--------
Confidence 699999999999999997 66 6889 888887764322234579999998888889999988775322100
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhC-CCEEEE
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTG-LDSYSANNVVNLLKQLACE-SRIVIC 157 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~-LD~~~~~~i~~~l~~l~~~-~~~iii 157 (197)
+....+.+. +.+..++++.++|||||||+.+|||++ ++++||||++ ||+... ++++++..+ +.++++
T Consensus 94 -e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~ 162 (301)
T 2qnr_A 94 -DCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVI 162 (301)
T ss_dssp ---CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEE
T ss_pred -HHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEE
Confidence 011111111 123345778899999999999999885 9999999984 999873 566666554 667888
Q ss_pred EecCCc
Q psy4235 158 AIHQPT 163 (197)
Q Consensus 158 ~th~~~ 163 (197)
+.||..
T Consensus 163 ~K~Dl~ 168 (301)
T 2qnr_A 163 AKADTL 168 (301)
T ss_dssp CCGGGS
T ss_pred EeCCCC
Confidence 888864
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.82 E-value=4e-21 Score=155.20 Aligned_cols=115 Identities=20% Similarity=0.336 Sum_probs=82.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ |+ +|+|.++|.++... .+..+++++|.
T Consensus 31 ~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~~~-~~~~~~~v~q~------------------------------ 78 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEYV-FKHKKSIVNQR------------------------------ 78 (261)
T ss_dssp ECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCCSC-CCCSSSEEEEE------------------------------
T ss_pred ECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCcceee-cCCcceeeeHH------------------------------
Confidence 59999999999999999987 67 89999998775311 01111222221
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
.++++. ..| |++||++|..+|+++++|||| |+.+...++ +. +..|.++++++
T Consensus 79 ---------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~ 130 (261)
T 2eyu_A 79 ---------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTL 130 (261)
T ss_dssp ---------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEE
T ss_pred ---------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEe
Confidence 123321 122 899999999999999999999 988865443 33 34689999999
Q ss_pred cCCcchHHhhcCeEEEEe
Q psy4235 160 HQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~ 177 (197)
|+.. +...|||+++|.
T Consensus 131 H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 131 HTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp CCSS--HHHHHHHHHHTS
T ss_pred Ccch--HHHHHHHHhhhc
Confidence 9963 567888876553
No 98
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.81 E-value=7.6e-22 Score=165.38 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=111.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc----------ccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----------TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~----------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+++|+|+.+ |+.|.|.+.|++... ..+.+.+.+++|.+. +..+.+......
T Consensus 77 iG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~-- 148 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGAS-ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA-- 148 (347)
T ss_dssp EECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH--
T ss_pred ECCCCCCHHHHHHHHhcCCC-CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH--
Confidence 59999999999999999998 799999999875211 012345677777432 233332211100
Q ss_pred CccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
..+.+.+...+-. -..-..+..||+|| ||+++| +.+|++ |+|+|+.....+.+++.++.
T Consensus 149 ----------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~ 208 (347)
T 2obl_A 149 ----------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAG 208 (347)
T ss_dssp ----------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCE
T ss_pred ----------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHh
Confidence 0111111111110 00114678899999 899999 578876 99999999999999999987
Q ss_pred h--CCC-----EEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 150 C--ESR-----IVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 150 ~--~~~-----~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
+ .|. ||+++|||.. ..+||+++++.+ |+++.++++.++
T Consensus 209 ~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l~~~ 253 (347)
T 2obl_A 209 PAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTRELAEE 253 (347)
T ss_dssp ECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHHHTT
T ss_pred CCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCHHHc
Confidence 4 466 8899999874 578999999987 999988887765
No 99
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.81 E-value=2.2e-19 Score=136.52 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=68.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235 96 RQVQISGLSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171 (197)
Q Consensus 96 ~~~~~~~LSgGq~qrv~ia~al~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d 171 (197)
..+++..||||||||++||++|+. .|+++||||||++||+.++..+.++|+++++ +.++|++||+. .....||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCC
Confidence 345678999999999999999974 4699999999999999999999999999865 46788999985 4678999
Q ss_pred eEEEEe
Q psy4235 172 TVSLLA 177 (197)
Q Consensus 172 ~v~~l~ 177 (197)
+++.+.
T Consensus 135 ~i~~v~ 140 (173)
T 3kta_B 135 KIIGVS 140 (173)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998653
No 100
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.81 E-value=4.5e-20 Score=170.93 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEEEE
Q psy4235 101 SGLSGGQRKRLALAVQL--LTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVSLL 176 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al--~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~~l 176 (197)
..+|+++.++..+|+++ +.+|+++||||||+|+|+.....+ ..+++.++++ |.++|++||+. ++..+||++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhccccee
Confidence 45788888888888887 899999999999999999999888 7777888764 89999999994 467899999888
Q ss_pred eCCcEEEEecChhH
Q psy4235 177 AHGGLLAYHGQVSK 190 (197)
Q Consensus 177 ~~gg~i~~~g~~~~ 190 (197)
.+ |++...++.++
T Consensus 798 ~n-g~v~~~~~~~~ 810 (934)
T 3thx_A 798 NN-LHVTALTTEET 810 (934)
T ss_dssp EE-EEEEEEEETTE
T ss_pred Ee-eEEEEEecCCc
Confidence 87 88876665544
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=4.8e-22 Score=158.77 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=94.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|+|++ |.+.++ ..++.++|++|+. +++.+|+.+++.+.......... .....
T Consensus 31 ~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 96 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHP-DAFDN 96 (245)
T ss_dssp ECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSG-GGBCH
T ss_pred ECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCc-ccccH
Confidence 4999999999999999865 223232 2356689999985 77889999998875432211100 00112
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th 160 (197)
+.+.+.++.+ .+..+.++..||+||+||+.+ ++++.+|+++|+|||....+.. +.++ .+.+|++++|
T Consensus 97 ~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th 163 (245)
T 2jeo_A 97 DLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTD 163 (245)
T ss_dssp HHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECC
T ss_pred HHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECC
Confidence 3344555543 345667889999999999988 5888899999999998887763 2222 2678999999
Q ss_pred CCc
Q psy4235 161 QPT 163 (197)
Q Consensus 161 ~~~ 163 (197)
+..
T Consensus 164 ~~~ 166 (245)
T 2jeo_A 164 SDV 166 (245)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.79 E-value=1.2e-22 Score=156.73 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=96.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc-ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ ++| |.++|.++.. ..+++.+||++|+.. ... +++. .... ...
T Consensus 7 ~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l~---~~~~--~~~---- 69 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPLS---RVGL--EPP---- 69 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEEE---ECCC--CCC----
T ss_pred ECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehhh---cccc--cCC----
Confidence 59999999999999999875 789 9999987743 234677899999751 111 1110 0000 000
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCC
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRL-ALAV---QLLTEPQILFCDE--PTTGLDSYSANNVVNLLKQLACESR 153 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv-~ia~---al~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~~~~~ 153 (197)
...-.....++...+|+|||+++ ++++ |++.+|++||+|| |+..+|+...+.+.++++ ...
T Consensus 70 ---------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~ 136 (189)
T 2i3b_A 70 ---------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPG 136 (189)
T ss_dssp ---------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSS
T ss_pred ---------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCC
Confidence 00011234556667999999988 4454 6899999999999 899999986666666554 333
Q ss_pred EEEE----EecCCcchHHhhcCeEEEEeCCcEEEE
Q psy4235 154 IVIC----AIHQPTSGVFEKFDTVSLLAHGGLLAY 184 (197)
Q Consensus 154 ~iii----~th~~~~~~~~~~d~v~~l~~gg~i~~ 184 (197)
++|+ ++|+.. ..++|++..+.+ |+++.
T Consensus 137 ~~ilgti~vsh~~~---~~~vd~i~~~~~-~~i~~ 167 (189)
T 2i3b_A 137 TIILGTIPVPKGKP---LALVEEIRNRKD-VKVFN 167 (189)
T ss_dssp CCEEEECCCCCSSC---CTTHHHHHTTCC-SEEEE
T ss_pred cEEEEEeecCCCCc---hHHHHHHeecCC-cEEEE
Confidence 4443 237642 245555555544 56543
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.79 E-value=6.9e-21 Score=173.46 Aligned_cols=117 Identities=20% Similarity=0.142 Sum_probs=86.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+|+|+...+..|.+. . ..+..+++++| +++.+++.||+..
T Consensus 582 ~GpNGsGKSTlLr~iagl~~~~~~G~~v------p--a~~~~i~~v~~---i~~~~~~~d~l~~---------------- 634 (765)
T 1ewq_A 582 TGPNMAGKSTFLRQTALIALLAQVGSFV------P--AEEAHLPLFDG---IYTRIGASDDLAG---------------- 634 (765)
T ss_dssp ESCSSSSHHHHHHHHHHHHHHHTTTCCB------S--SSEEEECCCSE---EEEECCC----------------------
T ss_pred ECCCCCChHHHHHHHHhhhhhcccCcee------e--hhccceeeHHH---hhccCCHHHHHHh----------------
Confidence 5999999999999999986323556532 1 11345778776 5666677666432
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL--LTEPQILFCDEP---TTGLDSYSA-NNVVNLLKQLACESRI 154 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al--~~~p~llllDEP---ts~LD~~~~-~~i~~~l~~l~~~~~~ 154 (197)
.+|+|+++++.+++++ +.+|+++||||| |++||+.+. ..+.+.|.+ .+.+
T Consensus 635 ---------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~ 690 (765)
T 1ewq_A 635 ---------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAY 690 (765)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCE
T ss_pred ---------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCE
Confidence 2588999999999999 999999999999 999999876 467877766 4789
Q ss_pred EEEEecCCcchHHhhc
Q psy4235 155 VICAIHQPTSGVFEKF 170 (197)
Q Consensus 155 iii~th~~~~~~~~~~ 170 (197)
+|++||+. ....++
T Consensus 691 vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 691 TLFATHYF--ELTALG 704 (765)
T ss_dssp EEEECCCH--HHHTCC
T ss_pred EEEEeCCH--HHHHhh
Confidence 99999985 344554
No 104
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.78 E-value=3.3e-19 Score=156.53 Aligned_cols=78 Identities=24% Similarity=0.306 Sum_probs=71.1
Q ss_pred ccCCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEE
Q psy4235 98 VQISGL-SGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174 (197)
Q Consensus 98 ~~~~~L-SgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~ 174 (197)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.++..+.++|+++++ +.+||++||++. +...||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEE
Confidence 356777 999999999999999999 99999999999999999999999999987 899999999963 456799999
Q ss_pred EEeC
Q psy4235 175 LLAH 178 (197)
Q Consensus 175 ~l~~ 178 (197)
+|.+
T Consensus 469 ~~~~ 472 (517)
T 4ad8_A 469 KVEK 472 (517)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9965
No 105
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.78 E-value=5.1e-20 Score=170.20 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=60.2
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCcchHHhhcCe
Q psy4235 95 RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLAC-ESRIVICAIHQPTSGVFEKFDT 172 (197)
Q Consensus 95 ~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~-~~~~iii~th~~~~~~~~~~d~ 172 (197)
...+..+.+|+||+|++.|+++ +.+|+++|||||++|||+.....+. .+++.+.+ .|.++|++||+.. +..++|+
T Consensus 728 ~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 728 NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp ------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 3344567899999999999999 8999999999999999999999987 77888865 5899999999953 4566664
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.77 E-value=5.5e-19 Score=143.42 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=96.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||++.+++... .|.++ .|.+... ...+.|+..+.... .+...+. ..... .. .
T Consensus 36 ~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~~---~~~v~~~~~e~~~~---~~~~r~~---~~g~~--~~----~ 96 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAAQIA---GGPDL-LEVGELP---TGPVIYLPAEDPPT---AIHHRLH---ALGAH--LS----A 96 (279)
T ss_dssp EESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCCC---CCCEEEEESSSCHH---HHHHHHH---HHHTT--SC----H
T ss_pred EcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccCC---CccEEEEECCCCHH---HHHHHHH---HHHhh--cC----h
Confidence 49999999999999998543 46553 3544321 23467776543210 1112221 11110 11 1
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-CCCE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT--GLDSYSA---NNVVNLLKQLAC-ESRI 154 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts--~LD~~~~---~~i~~~l~~l~~-~~~~ 154 (197)
....++++.+.+.+..++++..||+||+|++ ++++.+|+++|+|||++ ++|.... .++++.|+++++ .|.|
T Consensus 97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 2355678888888888889999999998765 68889999999999999 9998544 788888988864 5899
Q ss_pred EEEEecCCc
Q psy4235 155 VICAIHQPT 163 (197)
Q Consensus 155 iii~th~~~ 163 (197)
||+++|+..
T Consensus 174 vi~i~H~~~ 182 (279)
T 1nlf_A 174 IVFLHHASK 182 (279)
T ss_dssp EEEEEEC--
T ss_pred EEEEecCCC
Confidence 999999864
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=1.3e-20 Score=158.10 Aligned_cols=125 Identities=21% Similarity=0.131 Sum_probs=88.0
Q ss_pred CCCCCCcHHHHHHHHhcCcC-CCce----eE-EEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-GLVQ----GE-ILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT 74 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-~~~~----G~-i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~ 74 (197)
+||||||||||++.+++... +|++ |+ |++++++.. .++++++++|...+++. ++.+|+.+.. ..
T Consensus 137 ~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni~~~~------~~ 206 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIYVAR------AF 206 (349)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGEEEEE------CC
T ss_pred ECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCEEEEe------cC
Confidence 49999999999999999872 2566 68 888887642 13456778887665544 5555543210 00
Q ss_pred cHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH----------
Q psy4235 75 TWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL-------TEPQILFCDEPTTGLDSYS---------- 137 (197)
Q Consensus 75 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~-------~~p~llllDEPts~LD~~~---------- 137 (197)
-|.+++|++.++++++ .+|+++|+||||+++|+..
T Consensus 207 ----------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~ 258 (349)
T 1pzn_A 207 ----------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 258 (349)
T ss_dssp ----------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHH
T ss_pred ----------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHH
Confidence 1345667777777776 6899999999999999862
Q ss_pred --HHHHHHHHHHHHh-CCCEEEEEecCCc
Q psy4235 138 --ANNVVNLLKQLAC-ESRIVICAIHQPT 163 (197)
Q Consensus 138 --~~~i~~~l~~l~~-~~~~iii~th~~~ 163 (197)
..+++..|+.+++ .+.++|+++|...
T Consensus 259 ~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 259 QKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 3566777777765 4889999999753
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.76 E-value=1.6e-19 Score=151.77 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=80.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ ++ .|.|...+.++.. ......++++|.......++..+
T Consensus 129 ~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~------------------- 187 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSE------------------- 187 (356)
T ss_dssp ECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHH-------------------
T ss_pred ECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHH-------------------
Confidence 59999999999999999987 56 5777654444422 12223456666433222122111
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
+||+||.++|++|++|||+ |+.+ .+.+.+++..|.++++++
T Consensus 188 --------------------------------~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~ 228 (356)
T 3jvv_A 188 --------------------------------ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTL 228 (356)
T ss_dssp --------------------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEE
T ss_pred --------------------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEE
Confidence 9999999999999999999 6554 444445566799999999
Q ss_pred cCCcchHHhhcCeEEEEeC
Q psy4235 160 HQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 160 h~~~~~~~~~~d~v~~l~~ 178 (197)
|+.. . ...+||++.|..
T Consensus 229 H~~~-~-~~~~dRli~l~~ 245 (356)
T 3jvv_A 229 HTTS-A-AKTIDRVVDVFP 245 (356)
T ss_dssp SCSS-H-HHHHHHHHHTSC
T ss_pred ccCh-H-HHHHHHHhhhcC
Confidence 9974 3 488999887743
No 109
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.76 E-value=7.5e-19 Score=147.73 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=75.8
Q ss_pred cccCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchH
Q psy4235 97 QVQIS-GLSGGQRKRLALAVQLL---------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166 (197)
Q Consensus 97 ~~~~~-~LSgGq~qrv~ia~al~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~ 166 (197)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.++++. .++|++||. . .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 34566 79999999999999999 8999999999999999999999999998874 688888883 3 3
Q ss_pred HhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 167 FEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 167 ~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
.||+++++++ |+++..|+++++
T Consensus 333 --~~~~i~~l~~-G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQA-GRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEET-TEEEECCCTTTS
T ss_pred --cCCEEEEEEC-CEEEecCCHHHH
Confidence 8999999987 899999988765
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.75 E-value=4.5e-19 Score=138.85 Aligned_cols=148 Identities=11% Similarity=0.040 Sum_probs=95.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccccc---ceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS---RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~---~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 77 (197)
+||||||||||++.|++... +..|.|.+.+.+....... ..+++.+|..... .+.+ . ....
T Consensus 29 ~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~---~~~~-- 92 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII---------I---DALM-- 92 (235)
T ss_dssp ECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE---------E---ECCC--
T ss_pred EcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE---------E---eccc--
Confidence 59999999999999998776 4667777655443221111 1122222211000 0000 0 0000
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CC
Q psy4235 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ--ILFCDEPTTGL--DSYSANNVVNLLKQLAC-ES 152 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~--llllDEPts~L--D~~~~~~i~~~l~~l~~-~~ 152 (197)
..++ ... .....|.++.++...+.+...+|+ ++++||||+.+ |+....++++.|+++++ .+
T Consensus 93 ----------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~ 158 (235)
T 2w0m_A 93 ----------KEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN 158 (235)
T ss_dssp ---------------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred ----------cccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 0000 011 123449999998888888888999 99999999887 99999999999999865 48
Q ss_pred CEEEEEecCCc-------chHHhhcCeEEEEeC
Q psy4235 153 RIVICAIHQPT-------SGVFEKFDTVSLLAH 178 (197)
Q Consensus 153 ~~iii~th~~~-------~~~~~~~d~v~~l~~ 178 (197)
.++|+++|+.. ..+.++||++++|+.
T Consensus 159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp EEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred CeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 89999999862 247889999999975
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.73 E-value=3.6e-19 Score=162.93 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=86.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||||+|+|+......| ..+.. ....+++++| +++.+++.+|+...
T Consensus 613 tGpNGsGKSTlLr~iagl~~~~q~G------~~vpa--~~~~i~~~~~---i~~~~~~~d~l~~~--------------- 666 (800)
T 1wb9_A 613 TGPNMGGKSTYMRQTALIALMAYIG------SYVPA--QKVEIGPIDR---IFTRVGAADDLASG--------------- 666 (800)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS--SEEEECCCCE---EEEEEC-----------------------
T ss_pred ECCCCCChHHHHHHHHHHHHHHhcC------cccch--hcccceeHHH---HHhhCCHHHHHHhh---------------
Confidence 5999999999999999975311222 22211 1233566655 56666666665321
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNV-VNLLKQLACE-SRIVICA 158 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~-~~~iii~ 158 (197)
.+.+|+++++ ++.+...+.+|+++|||||++|+|+.....+ ..+++.+.++ +.++|++
T Consensus 667 -------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 667 -------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp ----------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred -------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1235666654 4444556899999999999999999888775 7888888874 8999999
Q ss_pred ecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235 159 IHQPTSGVFEKFDTVSLLAHGGLLA 183 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~gg~i~ 183 (197)
||+.. +..+||++..+.+ +.+.
T Consensus 727 TH~~e--l~~l~d~~~~v~n-~~~~ 748 (800)
T 1wb9_A 727 THYFE--LTQLPEKMEGVAN-VHLD 748 (800)
T ss_dssp CSCGG--GGGHHHHSTTEEE-EEEE
T ss_pred eCCHH--HHHHhhhhhceEE-EEEE
Confidence 99963 4568887655554 4443
No 112
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.72 E-value=2.9e-22 Score=166.14 Aligned_cols=156 Identities=16% Similarity=0.082 Sum_probs=101.1
Q ss_pred CCCCCCcHHHHHHHHhcCc--------CCCceeEEEECCeeCCcc------------------cccceEEEE---ecCCC
Q psy4235 1 MSPSGAGKTTLLAALNKRV--------KGLVQGEILLNGCPISRT------------------VMSRISGYV---AQQDF 51 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~--------~~~~~G~i~~~g~~~~~~------------------~~~~~~~~v---~q~~~ 51 (197)
+|+||||||||+|.|+|.. . ++.|+|.++|.++... .+.+.++++ +|+..
T Consensus 10 ~G~~GaGKTTll~~l~~~~~~~~~aVi~-~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~~~ 88 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQHGYKIAVIE-NEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGN 88 (318)
T ss_dssp EESSSSSCHHHHHHHHHSCCCCCEEEEC-SSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred EecCCCCHHHHHHHHHhhcCCCcEEEEE-ecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhcCC
Confidence 4999999999999999986 5 6899999999887432 122346666 67766
Q ss_pred CCCCCCHHHHHHHHHHccCCcc---ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy4235 52 LIEELTVLEHLQFMAKLTMDRR---TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDE 128 (197)
Q Consensus 52 ~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDE 128 (197)
+++..++.||..++........ .........+..++..+++.+..++.. ++|+||+||+..+++++.+|+++ ||
T Consensus 89 ~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de 165 (318)
T 1nij_A 89 IQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GE 165 (318)
T ss_dssp CCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CH
Confidence 6667777776654210000000 000000001122333344444444333 79999999999888888999987 88
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235 129 PTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171 (197)
Q Consensus 129 Pts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d 171 (197)
| .++.+.+++++ .+.+|++++|+.. .+..++|
T Consensus 166 ~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 166 A---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp T---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred H---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 8 77888888875 5789999999754 3444433
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.72 E-value=9.1e-20 Score=143.65 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=90.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCH----HHHHHHHHHccCCcccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV----LEHLQFMAKLTMDRRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv----~e~l~~~~~~~~~~~~~ 75 (197)
+||||||||||+|+|+|+.+| +.+|.|.+.+.+.... .++.++|+||++..|+.+++ .||+.+....+ ...
T Consensus 22 ~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y---g~~ 97 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY---GTS 97 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE---EEE
T ss_pred ECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC---CCC
Confidence 599999999999999999873 3789999988765332 23457999998776666555 33332211110 000
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.+. +..++..++++||| ||+.++.++.+.+. ++.+|
T Consensus 98 ----~~~-------------------------------v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI 133 (219)
T 1s96_A 98 ----REA-------------------------------IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSI 133 (219)
T ss_dssp ----HHH-------------------------------HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEE
T ss_pred ----HHH-------------------------------HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEE
Confidence 011 22333447999999 99999999998875 57899
Q ss_pred EEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHHHhh
Q psy4235 156 ICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194 (197)
Q Consensus 156 ii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~~~~ 194 (197)
++++|+.. .+.. |+ +.. | .++++++...
T Consensus 134 ~i~th~~~-~l~~---Rl--~~r-G----~~~~e~i~~r 161 (219)
T 1s96_A 134 FILPPSKI-ELDR---RL--RGR-G----QDSEEVIAKR 161 (219)
T ss_dssp EEECSSHH-HHHH---HH--HTT-S----CSCHHHHHHH
T ss_pred EEECCCHH-HHHH---HH--HHc-C----CCCHHHHHHH
Confidence 99999864 4444 32 544 5 4677776544
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.72 E-value=5.4e-21 Score=152.59 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=99.0
Q ss_pred CCCCCCcHHHHHHHHh---cCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc--cC---Cc
Q psy4235 1 MSPSGAGKTTLLAALN---KRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL--TM---DR 72 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~---g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~--~~---~~ 72 (197)
+||||||||||+++|+ |+.. +++|+|.++|.+... .....+.+++|+..+++..++.+++...... .. ..
T Consensus 33 ~G~~GsGKSTl~k~La~~lg~~~-~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~ 110 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIAQNFGLQH-LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLD 110 (246)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCC-EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCeE-ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5999999999999999 9987 789999887765321 2233456677888888888999999874321 00 00
Q ss_pred cccHHHHHHHHHHHHH--HcC------------CcccccccCCCCCHHHHHHHHHHHHH-hhCCCEEEEe----CCCCCC
Q psy4235 73 RTTWLELNKTITRVME--NLG------------INHRRQVQISGLSGGQRKRLALAVQL-LTEPQILFCD----EPTTGL 133 (197)
Q Consensus 73 ~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~LSgGq~qrv~ia~al-~~~p~llllD----EPts~L 133 (197)
...... ..+..+.. .++ +....++++..||| |+ +|+ +.+|++++|| |||++|
T Consensus 111 g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~l 181 (246)
T 2bbw_A 111 GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQ 181 (246)
T ss_dssp SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCC
T ss_pred CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccC
Confidence 111111 12222221 223 23345677889999 65 777 9999999999 999999
Q ss_pred CHHHHHHHHHHHHHHHhC
Q psy4235 134 DSYSANNVVNLLKQLACE 151 (197)
Q Consensus 134 D~~~~~~i~~~l~~l~~~ 151 (197)
|+.+...+.+.++++.++
T Consensus 182 d~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 182 EDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp GGGSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999999988765
No 115
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.72 E-value=5.8e-17 Score=136.79 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=69.6
Q ss_pred ccCCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhc
Q psy4235 98 VQISGLSGGQRKRL------ALAVQLLTE-PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170 (197)
Q Consensus 98 ~~~~~LSgGq~qrv------~ia~al~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~ 170 (197)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.|+++.. +.+||++||++ . +...|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~-~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR-E-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG-G-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH-H-HHhhC
Confidence 56689999999988 567888999 999999999999999999999999998753 46899999996 3 67899
Q ss_pred CeEEEEeCCc
Q psy4235 171 DTVSLLAHGG 180 (197)
Q Consensus 171 d~v~~l~~gg 180 (197)
|+++++.+.|
T Consensus 353 d~~~~l~k~~ 362 (371)
T 3auy_A 353 DVIINVKKDG 362 (371)
T ss_dssp SEEEEEEESS
T ss_pred CEEEEEEecC
Confidence 9999998534
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.70 E-value=1.5e-22 Score=155.17 Aligned_cols=166 Identities=11% Similarity=0.129 Sum_probs=106.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+||||||||||+++|++ +.+|.++++|.++... ...++++|....++.+++++++.+.........
T Consensus 8 ~G~~GaGKSTl~~~L~~----~~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------- 73 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA----QLDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ------- 73 (189)
T ss_dssp ECSTTSSHHHHHHHHHH----HSSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred ECCCCCcHHHHHHHHhc----ccCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC-------
Confidence 59999999999999986 3678999998765321 234677776655556688888776532210000
Q ss_pred HHHHHHHHHcCCcccccccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4235 81 KTITRVMENLGINHRRQVQISGL--SGGQRKRLALAV------QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES 152 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~L--SgGq~qrv~ia~------al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 152 (197)
...+++.+. .....+....+ |+|++|++.++. +++.+|+...+|+ ++|+..... ++.+..+...+
T Consensus 74 --~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~ 146 (189)
T 2bdt_A 74 --NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDE 146 (189)
T ss_dssp --CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCT
T ss_pred --CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCc
Confidence 000111110 00001112234 888888888888 8999999888884 899988888 88888886667
Q ss_pred CEEEEEecC-CcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 153 RIVICAIHQ-PTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 153 ~~iii~th~-~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
.++|.++|. + +.+.+.||+|+ ++ |+++..|+++-+
T Consensus 147 ~~ii~tsh~~~-~~~e~~~~~i~--~~-g~~~~~~~~~~~ 182 (189)
T 2bdt_A 147 RYFYNTSHLQP-TNLNDIVKNLK--TN-PRFIFCMAGDPL 182 (189)
T ss_dssp TSEEECSSSCG-GGHHHHHHHHH--HC-GGGSCC------
T ss_pred cEEEeCCCCCh-hhHHHHHHHHh--hC-CcEEEeecCCch
Confidence 788888987 5 36889999997 65 888888887644
No 117
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.69 E-value=7.6e-17 Score=138.42 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=70.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeE
Q psy4235 98 VQISGLSGGQRKRLALAVQLL----TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173 (197)
Q Consensus 98 ~~~~~LSgGq~qrv~ia~al~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v 173 (197)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.++|+++..++.++|++||+. .....||++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~ 406 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDAL 406 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEE
Confidence 345679999999999999999 58999999999999999999999999999876678999999984 457889999
Q ss_pred EEEeC
Q psy4235 174 SLLAH 178 (197)
Q Consensus 174 ~~l~~ 178 (197)
+++..
T Consensus 407 ~~~~~ 411 (430)
T 1w1w_A 407 VGVYR 411 (430)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98864
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.69 E-value=1.7e-19 Score=139.54 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCccc-ccccCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 82 TITRVMENLGINHR-RQVQISGLSGGQRKR-LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 82 ~~~~~l~~~~l~~~-~~~~~~~LSgGq~qr-v~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
.+.++++..++... ...++..+|+||+|| +..+++++.+|+++++|||||++|+....++++.|.++..++.+
T Consensus 128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 45566777777644 366788899999999 89999999999999999999999999999999999998765543
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.68 E-value=4e-20 Score=141.47 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=95.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|. ++.|.|.++|.++... ...+.++|++|... +.+++.+|+.+...........
T Consensus 15 ~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~---- 85 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF---- 85 (191)
T ss_dssp EECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE----
T ss_pred ECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe----
Confidence 599999999999999996 3689999998775321 11234578887644 4568899887653211000000
Q ss_pred HHHHHHHHHHcCCcccc--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q psy4235 80 NKTITRVMENLGINHRR--QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~--~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii 157 (197)
..++.++..+++.... +.++..+|+|++|++.++|++..+|+++ +|+...+.+.+.++.+......+ +
T Consensus 86 -~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~-i 155 (191)
T 1zp6_A 86 -VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHV-L 155 (191)
T ss_dssp -EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGE-E
T ss_pred -EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccE-E
Confidence 0001111112222222 4456789999999999999999999876 68888888888877664433334 4
Q ss_pred EecCCcchHHhhcCeE
Q psy4235 158 AIHQPTSGVFEKFDTV 173 (197)
Q Consensus 158 ~th~~~~~~~~~~d~v 173 (197)
.|++. .+.+.++++
T Consensus 156 ~t~~~--~~~~~~~~i 169 (191)
T 1zp6_A 156 PVSGK--DTDQALQSA 169 (191)
T ss_dssp ECTTC--CTTTTTTTT
T ss_pred ECCCC--CHHHHHHHH
Confidence 45432 124445544
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.1e-18 Score=147.56 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=78.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCc--ccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR--TVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+|+||||||||+++|+|... +..| .+|.++.. ....+.++|++|.+.+++.+||+||+.+....... ..+
T Consensus 37 vG~sGaGKSTLln~L~g~~~-~~~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~--~~~-- 108 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLTDL-YSPE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS--NCW-- 108 (418)
T ss_dssp ECCTTSSHHHHHHHHTTCCC-CCCC---CCSCC-----CCEEEEEECC------CEEEEEEECC-------------C--
T ss_pred ECCCCCcHHHHHHHHhCCCC-CCCC---CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccch--hhH--
Confidence 69999999999999999876 3344 12222211 11234579999998888889999998875432110 000
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ---ILFCDEPT-TGLDSYSANNVVNLLKQLACESRI 154 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~---llllDEPt-s~LD~~~~~~i~~~l~~l~~~~~~ 154 (197)
..+.+.++ ..++.+++||++|||+++.+|+ +|++|||| ++||+... .+++.+.. +..
T Consensus 109 --~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~ 169 (418)
T 2qag_C 109 --QPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVN 169 (418)
T ss_dssp --HHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSE
T ss_pred --HHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCc
Confidence 11112221 1345677889999999999999 99999999 69999873 44455544 667
Q ss_pred EEEEecCCc
Q psy4235 155 VICAIHQPT 163 (197)
Q Consensus 155 iii~th~~~ 163 (197)
+|++.|..+
T Consensus 170 iIlVinK~D 178 (418)
T 2qag_C 170 IIPLIAKAD 178 (418)
T ss_dssp EEEEEESTT
T ss_pred EEEEEEccc
Confidence 777777643
No 121
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.66 E-value=2.5e-16 Score=122.46 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=59.1
Q ss_pred CCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCcc-----
Q psy4235 102 GLSGGQ--RKRLALAVQLLTE-PQILFCDEPTTGLDSYS--------ANNVVNLLKQLACE-SRIVICAIHQPTS----- 164 (197)
Q Consensus 102 ~LSgGq--~qrv~ia~al~~~-p~llllDEPts~LD~~~--------~~~i~~~l~~l~~~-~~~iii~th~~~~----- 164 (197)
..|+++ +|+++.+++++.+ |+++++|||++.+|+.. ..++++.|++++++ +.++|+++|....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 345553 5788888899986 99999999999999743 24466667777654 8899999987531
Q ss_pred -------hHHhhcCeEEEEeC
Q psy4235 165 -------GVFEKFDTVSLLAH 178 (197)
Q Consensus 165 -------~~~~~~d~v~~l~~ 178 (197)
.+...||.+++|..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEE
T ss_pred cccCCCcceeecCcEEEEEEE
Confidence 46789999999976
No 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.65 E-value=3.7e-17 Score=137.13 Aligned_cols=107 Identities=18% Similarity=0.105 Sum_probs=76.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEEC-CeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN-GCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~-g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+|+|+|....+.+|+|.++ |.+... ...+.+++++|+..+++..+++++. +. .......
T Consensus 221 vG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~~-----l~---~l~~~e~ 291 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREFG-----LW---HLEPEQI 291 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----CC---CCCHHHH
T ss_pred ECCCCccHHHHHHHHhccccccccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHhh-----hc---CCCHHHH
Confidence 699999999999999998761489999987 765432 2345689999998888888888841 11 1223344
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al 117 (197)
...+.++++.+++.+..+.++.++| ||+||++||+++
T Consensus 292 ~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 292 TQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 5667889999999999999999999 999999999874
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.65 E-value=6.2e-18 Score=140.59 Aligned_cols=152 Identities=13% Similarity=0.086 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc-------ccce--EEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-------MSRI--SGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~-------~~~~--~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+||||||||||+++|+|+++ |++|+|.+.|.++.... +.+. +.|++|...++|.++|++|+.++......
T Consensus 135 vG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d 213 (328)
T 3e70_C 135 VGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGID 213 (328)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCS
T ss_pred ECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccch
Confidence 59999999999999999998 79999999999975321 1222 45999999999999999999876432111
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q psy4235 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC- 150 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~- 150 (197)
. -+++..|+.+.....+.+|| .+++++..++++++||.++. +.+.+.++.+.+
T Consensus 214 ~------------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~ 267 (328)
T 3e70_C 214 V------------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEA 267 (328)
T ss_dssp E------------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHH
T ss_pred h------------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHh
Confidence 0 01222343333333333444 48899988888888885543 455666666664
Q ss_pred CCCEEEEEecCCcc--------hHHhhcCeEEEEeCC
Q psy4235 151 ESRIVICAIHQPTS--------GVFEKFDTVSLLAHG 179 (197)
Q Consensus 151 ~~~~iii~th~~~~--------~~~~~~d~v~~l~~g 179 (197)
.+.++|++||.+.. .+....-.|.++..|
T Consensus 268 ~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~G 304 (328)
T 3e70_C 268 VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVG 304 (328)
T ss_dssp SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECS
T ss_pred cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCC
Confidence 47889999996421 123344567777763
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.64 E-value=1.2e-19 Score=152.77 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=89.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCce----eEEEEC----CeeCC--cccccceEEEEecCCCCCCCCCHHHHHHHHHHccC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQ----GEILLN----GCPIS--RTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTM 70 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~----G~i~~~----g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~ 70 (197)
+||||||||||+|+|+|++. |++ |+|+++ |.++. ...+ +.++|++|+..++. .|+.+|+.+
T Consensus 176 vG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~-~t~~~nl~~------ 246 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYA-VRHSHKIAF------ 246 (365)
T ss_dssp ECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHH-HHHCSSEEE------
T ss_pred ECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHH-HhccCCEEE------
Confidence 59999999999999999998 688 777653 22220 0011 12333333221111 122222111
Q ss_pred CccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHH
Q psy4235 71 DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL-TEPQILFCDE---PT------TGLDSYSANN 140 (197)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~-~~p~llllDE---Pt------s~LD~~~~~~ 140 (197)
++ .+..+..+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..
T Consensus 247 -------------------~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~ 306 (365)
T 1lw7_A 247 -------------------ID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQ 306 (365)
T ss_dssp -------------------ES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHH
T ss_pred -------------------Ee-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHH
Confidence 00 11122233456777788888888775 6999999999 65 5899999999
Q ss_pred HHHHHHHHHh-CCCEEEEEecCCcchHHhhcCeEEEEe
Q psy4235 141 VVNLLKQLAC-ESRIVICAIHQPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 141 i~~~l~~l~~-~~~~iii~th~~~~~~~~~~d~v~~l~ 177 (197)
+.+.|+++.+ .+.++++++|. . ....+++++.+++
T Consensus 307 l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 307 FQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999988754 37888888875 2 5677888776664
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.63 E-value=5.7e-17 Score=136.97 Aligned_cols=112 Identities=21% Similarity=0.351 Sum_probs=80.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc-eeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~-~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|+++ ++ +|+|.+.+.++.. ..+..++|++|..
T Consensus 142 vG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------------------------- 190 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------------------------- 190 (372)
T ss_dssp ECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------------------------
T ss_pred ECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHhh-hhccCceEEEeee-----------------------------
Confidence 59999999999999999987 57 8999887766532 2345578888841
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q psy4235 80 NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~t 159 (197)
++++ +..| +.+|+++|..+|+++++|||+ |+.... ..++.. ..|.+++.++
T Consensus 191 ----------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~-~~g~~vi~t~ 241 (372)
T 2ewv_A 191 ----------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA-ETGHLVFGTL 241 (372)
T ss_dssp ----------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH-TTTCEEEECC
T ss_pred ----------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH-hcCCEEEEEE
Confidence 1111 1233 469999999999999999999 766533 344443 4588888888
Q ss_pred cCCcchHHhhcCeEE
Q psy4235 160 HQPTSGVFEKFDTVS 174 (197)
Q Consensus 160 h~~~~~~~~~~d~v~ 174 (197)
|+. .+...+||++
T Consensus 242 H~~--~~~~~~~rl~ 254 (372)
T 2ewv_A 242 HTN--TAIDTIHRIV 254 (372)
T ss_dssp CCC--SHHHHHHHHH
T ss_pred Ccc--hHHHHHHHHH
Confidence 874 3667777754
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=5.5e-16 Score=129.00 Aligned_cols=142 Identities=11% Similarity=0.057 Sum_probs=75.1
Q ss_pred CCCCCCcHHHHHHHHhc-CcCCCceeEEEECCeeCCcc-cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNK-RVKGLVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g-~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
.||||+|||||+++|++ +.. ++.|.+.++|.+.... .....+++++|.+.+....+- . . ......
T Consensus 42 ~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~~~~ 108 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------G---NNDRIV 108 (354)
T ss_dssp ECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CCHHH
T ss_pred ECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------C---CcchHH
Confidence 49999999999999999 566 6899999999876432 123457888886543211110 0 0 000001
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.++.+.++.+..++.... .||| +..+|+++|+|||++ ||+..+..+.+.+.+.. .+.++|++
T Consensus 109 ~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 109 IQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMV 170 (354)
T ss_dssp HHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEE
T ss_pred HHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEE
Confidence 122222332222332221 5566 788999999999999 99999999999998864 36789999
Q ss_pred ecCCcchHHhhcCeE
Q psy4235 159 IHQPTSGVFEKFDTV 173 (197)
Q Consensus 159 th~~~~~~~~~~d~v 173 (197)
||++......+.+|.
T Consensus 171 t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 171 CDSMSPIIAPIKSQC 185 (354)
T ss_dssp ESCSCSSCHHHHTTS
T ss_pred eCCHHHHHHHHHhhc
Confidence 998754333333443
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.59 E-value=1.6e-18 Score=131.57 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=81.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCc---eeEEEECCeeCCc------cccc-ceEE----EEecCCCCCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISR------TVMS-RISG----YVAQQDFLIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~---~G~i~~~g~~~~~------~~~~-~~~~----~v~q~~~~~~~ltv~e~l~~~~ 66 (197)
+|+||||||||+++|+|++. ++ .|.|.++|.++.. ..++ +.++ +++|++.+|- .+
T Consensus 8 vG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~------ 76 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR------ 76 (171)
T ss_dssp EESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE------
T ss_pred ECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec------
Confidence 59999999999999999988 56 8999999988432 1233 3456 7888766541 00
Q ss_pred HccCCccccHHHHHHHHHHHHHH-c-CCcccccccCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCC---CCC
Q psy4235 67 KLTMDRRTTWLELNKTITRVMEN-L-GINHRRQVQISGLSGGQRKRLALAVQLLTEPQIL-------FCDEPTT---GLD 134 (197)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~ll-------llDEPts---~LD 134 (197)
. .. +....+.++++. + +++...- ..|||||+||++||||++.+|++. +-|.|.. -+|
T Consensus 77 ---~----~~-~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 77 ---V----SE-EEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp ---C----CH-HHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred ---C----Ch-hhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 0 00 001134455554 4 4433322 249999999999999999999873 2355532 244
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q psy4235 135 SYSANNVVNLLKQLACESR 153 (197)
Q Consensus 135 ~~~~~~i~~~l~~l~~~~~ 153 (197)
....+.+.+++.+...+|.
T Consensus 146 ~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 146 RDEVERIAEFILSLLREGG 164 (171)
T ss_dssp TTCHHHHHHHHHHHHTC--
T ss_pred cccHHHHHHHHHHHHhccC
Confidence 5667888888877666654
No 128
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.57 E-value=4.7e-17 Score=133.84 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=76.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCccc--cc-ceEEEEecCCCCC-----CCCCHHHHH--HHH--
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRTV--MS-RISGYVAQQDFLI-----EELTVLEHL--QFM-- 65 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~~--~~-~~~~~v~q~~~~~-----~~ltv~e~l--~~~-- 65 (197)
+||||||||||+|+|+ +.. |++|+|.+ +|.+++... .. +.+||++|.|.+. +.+|+ ||+ .|.
T Consensus 171 ~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~ 247 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREF 247 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGG
T ss_pred ECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHH
Confidence 5999999999999999 887 79999999 998875431 11 2479999998653 78899 888 443
Q ss_pred --H--HccCCccccHHHHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHH
Q psy4235 66 --A--KLTMDRRTTWLELNKTITRVMENLGINH-RRQVQISGLSGGQRKRLALAV 115 (197)
Q Consensus 66 --~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~ia~ 115 (197)
. ..+.. ....+....+.++++.++|.+ ..++++..|||.++|++.|||
T Consensus 248 ~~~~c~~~~~--~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 248 LRYQCKYPDC--THTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHHHHSTTC--CSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHccCCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11110 001122356889999999986 788999999998899999986
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.56 E-value=2.8e-15 Score=113.65 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=42.4
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcch
Q psy4235 118 LTEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICAIHQPTSG 165 (197)
Q Consensus 118 ~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~ 165 (197)
+.+|++|+||||++ ++|+..+..+.+++....+++.++|++||...+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 34999999999985 9999999999999999887889999999987643
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=5.6e-15 Score=116.44 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=40.4
Q ss_pred hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCcch------------------HH
Q psy4235 119 TEPQILFCDEPTTGLDSY-------S-----ANNVVNLLKQLACE-SRIVICAIHQPTSG------------------VF 167 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~-------~-----~~~i~~~l~~l~~~-~~~iii~th~~~~~------------------~~ 167 (197)
.+|+++++|||++.+|+. . ..+++..|++++++ +.+||+++|..... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999985 3 34566666666554 88999999854321 22
Q ss_pred hhcCeEEEEeC
Q psy4235 168 EKFDTVSLLAH 178 (197)
Q Consensus 168 ~~~d~v~~l~~ 178 (197)
..||.+++|..
T Consensus 198 ~~~d~vi~l~~ 208 (243)
T 1n0w_A 198 HASTTRLYLRK 208 (243)
T ss_dssp CTTCEEEEEEE
T ss_pred hcCcEEEEEEE
Confidence 37999999986
No 131
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.9e-16 Score=134.31 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=95.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC---cccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccc--c
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRT--T 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~--~ 75 (197)
+||||||||||+|+|+|+.- +|.++. ....++.++|++|++.+++.+||.||+.|+......... .
T Consensus 48 vG~nGaGKSTLln~L~G~~l---------~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i 118 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTKF---------EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPI 118 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSCC----------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHH
T ss_pred ECCCCCCHHHHHHHHhCccc---------cCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHH
Confidence 59999999999999999742 222221 112245689999999988899999998764321100000 0
Q ss_pred HHHHHHHHHHHHHHc-CCcc----cccccC-----------CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy4235 76 WLELNKTITRVMENL-GINH----RRQVQI-----------SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSAN 139 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~ 139 (197)
.......+.+++... ++.. ..+.++ ..|+-.. +.|+++|..+++++++|||+..|.+....
T Consensus 119 ~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 119 VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHH
Confidence 011234455556554 4431 112221 2455555 78999999999999999999999999999
Q ss_pred HHHHHHHH-HHhCCCEEEEEecCC
Q psy4235 140 NVVNLLKQ-LACESRIVICAIHQP 162 (197)
Q Consensus 140 ~i~~~l~~-l~~~~~~iii~th~~ 162 (197)
.+.+.+++ +...|..|+.++.+.
T Consensus 196 ~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 196 KFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHHHHHHHcCCcEEecCCCc
Confidence 99999986 777788888877653
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.53 E-value=4.3e-16 Score=135.14 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=90.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------c--ccceEEEEecCCCCCCCCCHHHHHHHHHHccCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------V--MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMD 71 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~--~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~ 71 (197)
+|+||||||||+++|+|++. +++|+|.++|.++... . .++.++|++|+..+++.+++++|+.++......
T Consensus 299 VGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~D 377 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNID 377 (503)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred ECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999998 6899999988776431 1 234689999998888889999999987542211
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL-TEPQ-ILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~-~~p~-llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
.. +++..|..........+| +|++.+++++. ..|. +||...|++|.|.. +.++.++
T Consensus 378 vV------------LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~ 435 (503)
T 2yhs_A 378 VL------------IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFH 435 (503)
T ss_dssp EE------------EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHH
T ss_pred EE------------EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHH
Confidence 00 112222221111112223 47888888764 4563 55555588776544 3344454
Q ss_pred h-CCCEEEEEecC
Q psy4235 150 C-ESRIVICAIHQ 161 (197)
Q Consensus 150 ~-~~~~iii~th~ 161 (197)
+ -+.+.+|+||-
T Consensus 436 ~~~~itgvIlTKL 448 (503)
T 2yhs_A 436 EAVGLTGITLTKL 448 (503)
T ss_dssp HHTCCSEEEEECG
T ss_pred hhcCCCEEEEEcC
Confidence 3 37788899994
No 133
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.53 E-value=6.1e-15 Score=124.07 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=82.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC-CcccccceEEEEe-cCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI-SRTVMSRISGYVA-QQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~-~~~~~~~~~~~v~-q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|+++ |++|.|.++|..- .....++.++|++ |++.+-
T Consensus 181 vG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~------------------------- 234 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEIP-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEE------------------------- 234 (361)
T ss_dssp EESSSSCHHHHHHHHHTTSC-TTSCEEEEESSSCCCCTTCSSEEEEECC-------------------------------
T ss_pred ECCCCCCHHHHHHHHHhcCC-CCceEEEECCccccCccccCCEEEEeecCccccc-------------------------
Confidence 59999999999999999998 6999999998532 1112456688998 653310
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
++++..++-.|+.++..+|+.+++|||.. .++.+.++.+.....+++.+
T Consensus 235 ------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 235 ------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEE
T ss_pred ------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEE
Confidence 01222356667777778999999999986 34566777775544577888
Q ss_pred ecCCcchHHhhcCeEEEEeC
Q psy4235 159 IHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 159 th~~~~~~~~~~d~v~~l~~ 178 (197)
+|.. .+...+||+..+..
T Consensus 284 ~H~~--~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 284 CHAG--SCELTFERLALMVL 301 (361)
T ss_dssp EECS--SHHHHHHHHHHHHT
T ss_pred ECCC--CHHHHHHHHHHHHh
Confidence 8985 36788888877765
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.53 E-value=5.2e-15 Score=109.64 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=37.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q psy4235 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPT 163 (197)
Q Consensus 118 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~-iii~th~~~ 163 (197)
+.+|++|++|||++ ++...++.+++++..+.+++++ +|+++|...
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56899999999998 6666688999999998877777 888888654
No 135
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.52 E-value=2.1e-17 Score=141.46 Aligned_cols=120 Identities=19% Similarity=0.115 Sum_probs=82.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEe---------cCCCC--CCC----CCH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVA---------QQDFL--IEE----LTV 58 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~---------q~~~~--~~~----ltv 58 (197)
+|||||||||||++|+|++. +++|+|.+.+.++... ...+.+++.| |++.+ +.+ .|+
T Consensus 173 ~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~ 251 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETA 251 (418)
T ss_dssp ECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHH
T ss_pred ECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHH
Confidence 59999999999999999988 6899999998887421 1223345554 88765 343 588
Q ss_pred HHHHHHHHHccCC-ccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy4235 59 LEHLQFMAKLTMD-RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFC 126 (197)
Q Consensus 59 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llll 126 (197)
.+++.++..-+.. ...........+ +.+..+++.... .+..|||||+|| |||+|+.+|++..-
T Consensus 252 ~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 252 QIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 9998876421110 000000011222 346678887653 678999999999 99999999998763
No 136
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=7.4e-17 Score=134.62 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=93.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cccceEEEEecCCCCCCCCC------------HHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VMSRISGYVAQQDFLIEELT------------VLEH 61 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~v~q~~~~~~~lt------------v~e~ 61 (197)
+||||||||||+++|+|++. |++|+|.+.|.++... ..++.++|++|++.+|+..+ +.|.
T Consensus 61 ~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~ 139 (337)
T 2qm8_A 61 TGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRET 139 (337)
T ss_dssp ECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHH
Confidence 59999999999999999988 6899999999887431 23456899999988775321 2333
Q ss_pred HHHHHHc---------------------cC------CccccHHHHH---HHHHHHHHHcCCcccccc-cCCCCCHHHHHH
Q psy4235 62 LQFMAKL---------------------TM------DRRTTWLELN---KTITRVMENLGINHRRQV-QISGLSGGQRKR 110 (197)
Q Consensus 62 l~~~~~~---------------------~~------~~~~~~~~~~---~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qr 110 (197)
+...... .. .........+ ..+.+....+.+ ++.|. ....+|+|++|+
T Consensus 140 ~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~ 218 (337)
T 2qm8_A 140 MLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV-NKADDGDGERRASAAASE 218 (337)
T ss_dssp HHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE-EchhccCchhHHHHHHHH
Confidence 2111000 00 0000000000 011112112222 33442 335689999999
Q ss_pred HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4235 111 LALAVQLLT------EPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 111 v~ia~al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 150 (197)
+..+++++. .|++++ +|++|.....++++.|.++..
T Consensus 219 l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 219 YRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 999999987 688876 999999999999999988654
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.49 E-value=4.6e-16 Score=127.27 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=80.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHc---cCCccccHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKL---TMDRRTTWL 77 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~---~~~~~~~~~ 77 (197)
.|++|||||||.+.|++++. +. | . . .+.+.+|+|++.+++. +.++|+.+.... .........
T Consensus 37 ~G~sGsGKSTla~~L~~~l~-~~-g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a 101 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNHLM-EK-Y------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGT 101 (290)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-HH-H------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred ECCCCCCHHHHHHHHHHHhh-hc-C------C-----C-CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcch
Confidence 49999999999999999876 32 2 0 1 2345666999988875 888998875210 000000001
Q ss_pred HHHHHHHHHHHHcCCc--------ccccccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q psy4235 78 ELNKTITRVMENLGIN--------HRRQVQISGLSGGQRKRLALA--VQLLTEPQILFCDEPTTGLDSY 136 (197)
Q Consensus 78 ~~~~~~~~~l~~~~l~--------~~~~~~~~~LSgGq~qrv~ia--~al~~~p~llllDEPts~LD~~ 136 (197)
.....+.+.++.+.-. .....+...+||||+||+.+| +++ +|+|||+|||++++|+.
T Consensus 102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 1123455666665332 123445678999999999997 555 99999999999999985
No 138
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.49 E-value=1.1e-15 Score=125.65 Aligned_cols=97 Identities=25% Similarity=0.274 Sum_probs=65.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCccc-c--cceEEEEecCCC----------------CCCCCCH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRTV-M--SRISGYVAQQDF----------------LIEELTV 58 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~~-~--~~~~~~v~q~~~----------------~~~~ltv 58 (197)
+||||||||||+|+|+|+.. |++|+|.+ +|.+++... . .+.+||++|.|. +||.+|+
T Consensus 175 ~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~ 253 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD 253 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS
T ss_pred ECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc
Confidence 59999999999999999998 79999999 898875421 1 134799999975 5888999
Q ss_pred HHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCc-ccccccCCCCCH
Q psy4235 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSG 105 (197)
Q Consensus 59 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 105 (197)
+|+.|....+.. +...++.++++.++|. +..++++..||.
T Consensus 254 -~n~~~~~~~~~~------e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 254 -KQCFFSDCNHVD------EPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp -CCCSSTTCCSSS------CSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred -ccCcCCCCcCCC------CCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 998875321111 1235688999999995 778888888885
No 139
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=7.6e-15 Score=125.51 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=46.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q psy4235 97 QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ-LACESRIVICAIHQ 161 (197)
Q Consensus 97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~~~~iii~th~ 161 (197)
+.++.+||+|++|++.+|++|+..|.++++ +.+|+... ...+.+++ +...+.+++++|..
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSAL 307 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTT
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECC
Confidence 567788999999999999999999999999 99999877 44444444 44456666666543
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.40 E-value=1.1e-16 Score=140.13 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=93.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee-CCcccccceEEEEecCCC----------------------CCCCCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP-ISRTVMSRISGYVAQQDF----------------------LIEELT 57 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~-~~~~~~~~~~~~v~q~~~----------------------~~~~lt 57 (197)
+||||||||||+++|+|+++ |++|.|.++|.+ +.. .....++++.|... ++..++
T Consensus 266 ~GptGSGKTTlL~aL~~~i~-~~~giitied~~E~~~-~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir 343 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMFIP-PDAKVVSIEDTREIKL-YHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVR 343 (511)
T ss_dssp EESTTSSHHHHHHHHGGGSC-TTCCEEEEESSCCCCC-CCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCC
T ss_pred ECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCcccccC-CCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcC
Confidence 59999999999999999998 799999998865 221 11223444444322 223455
Q ss_pred HHHHHHHHHHccCC-ccccHHHHHHHHHHHHHHcC-----Ccc----ccc---ccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy4235 58 VLEHLQFMAKLTMD-RRTTWLELNKTITRVMENLG-----INH----RRQ---VQISGLSGGQRKRLALAVQLLTEPQIL 124 (197)
Q Consensus 58 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-----l~~----~~~---~~~~~LSgGq~qrv~ia~al~~~p~ll 124 (197)
..|++.+....... ..... .....+.++++++. +.. ..+ .....+|+||+||.+++.
T Consensus 344 ~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai--------- 413 (511)
T 2oap_1 344 GREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV--------- 413 (511)
T ss_dssp STHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE---------
T ss_pred HHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE---------
Confidence 55544433221100 00000 00011223333332 221 112 234568999999887652
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCcchHHhhcCe
Q psy4235 125 FCDEPTTGLDSYSANNVVNLLKQLACESRIVIC--AIHQPTSGVFEKFDT 172 (197)
Q Consensus 125 llDEPts~LD~~~~~~i~~~l~~l~~~~~~iii--~th~~~~~~~~~~d~ 172 (197)
+ | ++|||+.....+++.+.++..++.++++ +||+.. ++...|+.
T Consensus 414 -~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g~ 459 (511)
T 2oap_1 414 -N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLGV 459 (511)
T ss_dssp -E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHTS
T ss_pred -E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcCC
Confidence 2 7 9999998888888888777666888875 888864 67777653
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.39 E-value=5.6e-16 Score=120.51 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
+||||||||||+++|+|++.+ +..|.|.++|..+.. +..+++................
T Consensus 28 ~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp ECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGGTTSGGGBCHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhcccccCCCCchhhHHH
Confidence 599999999999999999872 134555555443321 1111110000000000011111
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA-VQLLTEPQILFCDEPT 130 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia-~al~~~p~llllDEPt 130 (197)
..+.+..+-..-.+..........+|+||+||++++ ++++.++.++++|||.
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 111111211111121112223345799999999998 8888888888899984
No 142
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.38 E-value=3.1e-14 Score=106.48 Aligned_cols=59 Identities=27% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
+||||||||||+|+|+|++ | ++|+|.++|.++......+ .|++|+..+| .+||.||+.+
T Consensus 39 ~G~nGaGKTTLlr~l~g~l-~-~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI-G-HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT-T-CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTHHHH
T ss_pred ECCCCCCHHHHHHHHHHhC-C-CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHHHHH
Confidence 5999999999999999988 4 8999999998874321111 3899998888 8999999865
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.38 E-value=1.9e-12 Score=110.19 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=45.8
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------chHH
Q psy4235 119 TEPQILFCDEPTTGLDSYSA------------NNVVNLLKQLACE-SRIVICAIHQPT------------------SGVF 167 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~~~------------~~i~~~l~~l~~~-~~~iii~th~~~------------------~~~~ 167 (197)
.+|+++++|||++.+|+... .++++.|++++++ +.+||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997533 5678888888765 899999999711 2357
Q ss_pred hhcCeEEEEeC
Q psy4235 168 EKFDTVSLLAH 178 (197)
Q Consensus 168 ~~~d~v~~l~~ 178 (197)
+.+|.+++|.+
T Consensus 352 ~~ad~vl~L~~ 362 (400)
T 3lda_A 352 YSSTTRLGFKK 362 (400)
T ss_dssp HHCSEEEEEEE
T ss_pred HhcceEEEEEe
Confidence 78999999986
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=4.1e-17 Score=138.49 Aligned_cols=157 Identities=11% Similarity=0.096 Sum_probs=106.3
Q ss_pred CCCCCCcHHHHHHHHhc------------CcCCCceeEEEECCeeCCc----ccccceE---EEEecCCCCCCCCCHHHH
Q psy4235 1 MSPSGAGKTTLLAALNK------------RVKGLVQGEILLNGCPISR----TVMSRIS---GYVAQQDFLIEELTVLEH 61 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g------------~~~~~~~G~i~~~g~~~~~----~~~~~~~---~~v~q~~~~~~~ltv~e~ 61 (197)
+|+||||||||+|+|+| ... |+.|.|.+.|..+.. ...++.+ .++.+.+.++..++..|+
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~ 104 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVLGNPANYPYATID-PEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG 104 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-TTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred ECCCCCCHHHHHHHHHCCCcccccCCCceeec-ceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHH
Confidence 69999999999999999 334 689999998854321 0111222 477788888887776655
Q ss_pred H--HHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHH
Q psy4235 62 L--QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEP--QILFCDEPTTGLDSYS 137 (197)
Q Consensus 62 l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p--~llllDEPts~LD~~~ 137 (197)
+ .|....+. ++.++..++.. .+..+..+|++. +| +++++|||+.++|+..
T Consensus 105 L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~ 158 (392)
T 1ni3_A 105 LGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEF 158 (392)
T ss_dssp SCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------CcchhhhhchhhhHHHHHHH
Confidence 4 33322211 11111111211 133444566653 89 9999999999999999
Q ss_pred HHHHHHHHHHH-HhCCCEEEEEecCCcchHHhhcCeEE-EEeCCc-EEEEecCh
Q psy4235 138 ANNVVNLLKQL-ACESRIVICAIHQPTSGVFEKFDTVS-LLAHGG-LLAYHGQV 188 (197)
Q Consensus 138 ~~~i~~~l~~l-~~~~~~iii~th~~~~~~~~~~d~v~-~l~~gg-~i~~~g~~ 188 (197)
.++.++.++.. ...|.+++ +|.. ..+..+||++. +|.+ | ++++.++.
T Consensus 159 ~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~-G~~~~~~~~~ 208 (392)
T 1ni3_A 159 VEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTE-TKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHT-TCSCGGGSCC
T ss_pred HHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhcc-CCceeecCCC
Confidence 99999999998 66666643 8886 47899999998 8877 7 66555544
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.36 E-value=7.2e-15 Score=122.20 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=84.6
Q ss_pred CCCCCCcHHHHHHHHhcCc----CCCceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCcc
Q psy4235 1 MSPSGAGKTTLLAALNKRV----KGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRR 73 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~----~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~ 73 (197)
+||||+|||||+++|+|.+ . +++|.+..++.++... .....+.|++|.+.+.+ ++.|++...........
T Consensus 57 ~Gp~G~GKTTLa~~ia~~l~~~~~-~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i 133 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASELQTNIH-VTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDI 133 (334)
T ss_dssp ESSTTSSHHHHHHHHHHHHTCCEE-EEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC
T ss_pred ECCCCCcHHHHHHHHHHHhCCCEE-EEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccce
Confidence 4999999999999999987 4 4677776665554211 11346899999877765 78888754433221100
Q ss_pred -ccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy4235 74 -TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151 (197)
Q Consensus 74 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 151 (197)
.......+.+...+..+++.. +.+++..||+|++||+.++ .+||+.+..++.++|++.++.
T Consensus 134 ~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 134 MIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ---------------CCCEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred eeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 000111234455566666655 6778899999999998655 788888899999999887643
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.35 E-value=1.5e-14 Score=119.03 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=60.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEE---CCeeCCcc-cccce-EEEEecCCCCCC----CCCHHHHHH--HHHH--
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILL---NGCPISRT-VMSRI-SGYVAQQDFLIE----ELTVLEHLQ--FMAK-- 67 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~---~g~~~~~~-~~~~~-~~~v~q~~~~~~----~ltv~e~l~--~~~~-- 67 (197)
+||||||||||+|+|+|... +.+|+|.+ +|+.++.. .+.+. ++|++|.|.+.+ .+|+ |++. |...
T Consensus 179 vG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~ 256 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIRE 256 (307)
T ss_dssp EESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHH
T ss_pred ECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHH
Confidence 59999999999999999988 79999999 88776542 22222 699999987765 6889 8883 3210
Q ss_pred c----cCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHH
Q psy4235 68 L----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110 (197)
Q Consensus 68 ~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 110 (197)
. .........+....+.++++.++|.+........++.|++||
T Consensus 257 ~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 257 KSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 1 000000011123568899999999875555566677788773
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.31 E-value=3.8e-17 Score=126.47 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=42.1
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 113 LAV-QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 113 ia~-al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
.++ +++.+|++++||||++++|..+.+.|.+.|.....+ +...|. ...+|.++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~-----~~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE-----PGLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS-----TTTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc-----cCCceEEEECCC
Confidence 455 677888888899999999999999999988887643 122341 156899877653
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.30 E-value=2.1e-16 Score=128.28 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=85.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+|+|+|... + |.|.++|.++... ...+.++++||.. ...|.+++.|++.+..... .
T Consensus 50 ~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r---~--- 120 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANESG-L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR---S--- 120 (274)
T ss_dssp ESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------
T ss_pred ECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc---C---
Confidence 49999999999999999876 3 7899999887432 1234578888874 4566667777665422110 0
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC------------CCCHHHHHHHHHH
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT------------GLDSYSANNVVNL 144 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts------------~LD~~~~~~i~~~ 144 (197)
. .... .+....++.+.+|||||+||+.|++|+.++|++| |||+. -.|...+.+|++.
T Consensus 121 --~-~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 121 --D-RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp ---------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred --C-Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 0 0000 1234456677889999999999999999999985 99864 3356666666654
Q ss_pred H
Q psy4235 145 L 145 (197)
Q Consensus 145 l 145 (197)
+
T Consensus 190 ~ 190 (274)
T 2x8a_A 190 I 190 (274)
T ss_dssp H
T ss_pred H
Confidence 4
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.24 E-value=4.5e-12 Score=104.29 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=68.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|||||||||+++.|++.+. +..|+|.+.+.+..+. + ..+
T Consensus 110 vG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r~------~-------------a~e-------------------- 149 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRA------A-------------AIE-------------------- 149 (306)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCH------H-------------HHH--------------------
T ss_pred EcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccccH------H-------------HHH--------------------
Confidence 59999999999999999987 5777888776654210 0 011
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRL---ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv---~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
.+..+.+.+++.. +...|+|+.+++ ++++++..+|+++|+|||.. ......+++.++.+
T Consensus 150 -qL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 150 -QLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp -HHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 1223445556643 235689999999 89999999999999999974 33444555545444
No 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.23 E-value=4.1e-13 Score=102.59 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 110 rv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
.+.+|++++.+|+++++| ||++|..+..++++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999998865
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.13 E-value=3.6e-11 Score=98.43 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=78.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|||||||||+++.|++.+. +++| +.+.++.++.. ..++.+++.....
T Consensus 111 vG~~GsGKTTl~~~LA~~l~-~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~------------- 158 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLAAISM-LEKH---------------KKIAFITTDTY---RIAAVEQLKTYAE------------- 158 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHH-HTTC---------------CCEEEEECCCS---STTHHHHHHHHHT-------------
T ss_pred ECCCCCCHHHHHHHHHHHHH-HhcC---------------CEEEEEecCcc---cchHHHHHHHHHH-------------
Confidence 59999999999999999886 4556 23566666542 2355565554321
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC--ESRIVICA 158 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~~~iii~ 158 (197)
..++..... .+. ..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+.. ...+++++
T Consensus 159 --------~~gl~~~~~-----~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl 220 (296)
T 2px0_A 159 --------LLQAPLEVC-----YTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVL 220 (296)
T ss_dssp --------TTTCCCCBC-----SSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEE
T ss_pred --------hcCCCeEec-----CCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEE
Confidence 122221111 122 233455554 4999999999 889998776655555444331 22234444
Q ss_pred --ecCCcchHHhhcCeEEEEeCCcEEE
Q psy4235 159 --IHQPTSGVFEKFDTVSLLAHGGLLA 183 (197)
Q Consensus 159 --th~~~~~~~~~~d~v~~l~~gg~i~ 183 (197)
+|.. ..+.+.++++..+..+|.+.
T Consensus 221 ~at~~~-~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 221 SATAKY-EDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp ETTBCH-HHHHHHTTTTSSSCCCEEEE
T ss_pred ECCCCH-HHHHHHHHHHhcCCCCEEEE
Confidence 6764 46777788765555544443
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.12 E-value=1.8e-12 Score=106.69 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=70.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEE---CCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILL---NGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~---~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+||||||||||+++|+|++.. |++|+|.+ +|...... .++.++++ |...+++.+|+.+++.+.........
T Consensus 86 ~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--- 160 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--- 160 (308)
T ss_dssp EECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---
Confidence 599999999999999998751 48999999 88765332 23446888 87788888999999988654432110
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy4235 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD 134 (197)
....+....+.+ +|+..+.+.+.+|+++|+|.|....+
T Consensus 161 ------------------~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 161 ------------------NVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp ------------------CEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ------------------ceeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 001111111111 22222223446789999999988776
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.11 E-value=2.3e-10 Score=93.59 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=75.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN 80 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 80 (197)
+|+||+||||+++.|++.+. +..|+|.+.+.++..... + +.+.
T Consensus 104 ~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~~------------------~-~ql~----------------- 146 (295)
T 1ls1_A 104 VGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAA------------------R-EQLR----------------- 146 (295)
T ss_dssp ECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHHH------------------H-HHHH-----------------
T ss_pred ECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHhH------------------H-HHHH-----------------
Confidence 49999999999999999987 577888887766532100 0 0000
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q psy4235 81 KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP-TTGLDSYSANNVVNLLKQLACESRIVICA 158 (197)
Q Consensus 81 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP-ts~LD~~~~~~i~~~l~~l~~~~~~iii~ 158 (197)
.+.+..++.-..... ..+-.+.+|.+|+.+...+++++|+||| ++++|.....++.++.+.+.. ..+++++
T Consensus 147 ----~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~-~~~~lv~ 218 (295)
T 1ls1_A 147 ----LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP-DEVLLVL 218 (295)
T ss_dssp ----HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCC-SEEEEEE
T ss_pred ----HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCC-CEEEEEE
Confidence 012223443221100 1233345788999998899999999999 999999888888888776643 3344444
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.11 E-value=6.7e-12 Score=98.79 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=44.0
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCcch-------HHhhcCeEEEEeC
Q psy4235 119 TEPQILFCDEPTTGL--DSYSANNVVNLLKQLA-CESRIVICAIHQPTSG-------VFEKFDTVSLLAH 178 (197)
Q Consensus 119 ~~p~llllDEPts~L--D~~~~~~i~~~l~~l~-~~~~~iii~th~~~~~-------~~~~~d~v~~l~~ 178 (197)
.+|+++++|+|++.+ |+....+++..+.++. +.+.++++++|..... +.+.||.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999887 6655556555555554 5688999999976421 4678999999864
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.10 E-value=1.7e-10 Score=96.55 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcc-----
Q psy4235 109 KRLALAVQLLTE--PQILFCDEPTTGL----------DS---YSANNVVNLLKQL----ACESRIVICAIHQPTS----- 164 (197)
Q Consensus 109 qrv~ia~al~~~--p~llllDEPts~L----------D~---~~~~~i~~~l~~l----~~~~~~iii~th~~~~----- 164 (197)
+-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++++ ++.+.++|+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677888755 9999999999988 32 1222445555554 3458899999886421
Q ss_pred ----------hHHhhcCeEEEEeCCcEEE
Q psy4235 165 ----------GVFEKFDTVSLLAHGGLLA 183 (197)
Q Consensus 165 ----------~~~~~~d~v~~l~~gg~i~ 183 (197)
.+..+||.++.+.. +.+.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~ 233 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETL 233 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEE
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeee
Confidence 15678998888876 4443
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.10 E-value=2.3e-12 Score=112.56 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=85.1
Q ss_pred CCCCCCcHHHHHHHHhc-CcCCCceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNK-RVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
.|++||||||++++|.. ++...+.|++.+.+.|.....+.. | ..-+.+.. +|.++.......- .....++
T Consensus 173 aG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~---~-~~lPhl~~--~Vvtd~~~a~~~L---~~~~~Em 243 (512)
T 2ius_A 173 AGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV---Y-EGIPHLLT--EVVTDMKDAANAL---RWCVNEM 243 (512)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG---G-TTCTTBSS--SCBCSHHHHHHHH---HHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh---h-ccCCcccc--eeecCHHHHHHHH---HHHHHHH
Confidence 49999999999999875 322134577776666643211110 0 00011110 1212221111100 0112234
Q ss_pred HHHHHHHHHHcCCcccccc---cCCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHH
Q psy4235 80 NKTITRVMENLGINHRRQV---QISGLSGGQRKRL----------ALAVQLLTEPQ-ILFCDEPTTGLDSYSANNVVNLL 145 (197)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~~---~~~~LSgGq~qrv----------~ia~al~~~p~-llllDEPts~LD~~~~~~i~~~l 145 (197)
+++. +++...|+.+.... ....+|+||+|+. .+++++...|. ++++||+++-++.. ...+.+.+
T Consensus 244 erR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l 321 (512)
T 2ius_A 244 ERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELI 321 (512)
T ss_dssp HHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHH
T ss_pred HHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHH
Confidence 4443 67888888654332 2346788887752 35566677888 89999999888733 34455555
Q ss_pred HHHH----hCCCEEEEEecCCc
Q psy4235 146 KQLA----CESRIVICAIHQPT 163 (197)
Q Consensus 146 ~~l~----~~~~~iii~th~~~ 163 (197)
..+. +-|.++|++||.+.
T Consensus 322 ~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 322 ARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHhhhCCcEEEEEecCCc
Confidence 5543 23778999999975
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.07 E-value=1.5e-10 Score=99.89 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=92.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee-EEEECCeeCCcccccce-EEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG-EILLNGCPISRTVMSRI-SGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLE 78 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~~~g~~~~~~~~~~~-~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 78 (197)
.|++|+|||||+..+++... +..| .|.+.+...+...+.++ .+.... ... +.+. .. ... ..
T Consensus 209 ~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~~l~----~g---~l~-~~ 271 (454)
T 2r6a_A 209 AARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-QNLR----TG---KLT-PE 271 (454)
T ss_dssp ECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-HHHH----TS---CCC-HH
T ss_pred ECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-HHHh----cC---CCC-HH
Confidence 49999999999999987654 2334 34443333222111111 000000 000 0010 00 011 12
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHH
Q psy4235 79 LNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDS--------YSANNVVNLLKQL 148 (197)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~--~~p~llllDEPts~LD~--------~~~~~i~~~l~~l 148 (197)
...++.+.++.++..+..-.....+|.++.+ +.++.++ .+|+++++|+++.-.++ .....+.+.|+.+
T Consensus 272 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l 349 (454)
T 2r6a_A 272 DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL 349 (454)
T ss_dssp HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 2234455555554433333345689999886 5666666 68999999999987642 3346677778888
Q ss_pred HhC-CCEEEEEec---------C--Cc-------chHHhhcCeEEEEeC
Q psy4235 149 ACE-SRIVICAIH---------Q--PT-------SGVFEKFDTVSLLAH 178 (197)
Q Consensus 149 ~~~-~~~iii~th---------~--~~-------~~~~~~~d~v~~l~~ 178 (197)
+++ +.+||+++| + +. ..+.+.||.|++|..
T Consensus 350 Ake~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 350 ARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp HHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 755 889999988 2 21 036788999999976
No 158
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.99 E-value=1.1e-11 Score=94.85 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy4235 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149 (197)
Q Consensus 111 v~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 149 (197)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999998887643
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=1.7e-11 Score=109.44 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=82.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCce-eEEEECCeeCCcccccceEEEEecCCC----------------------CCCCCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDF----------------------LIEELT 57 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~-G~i~~~g~~~~~~~~~~~~~~v~q~~~----------------------~~~~lt 57 (197)
+||||+|||||+++|++.+. +.. |.+.+++.+.... ...++|+|+... .+..++
T Consensus 66 ~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~~--~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~ 142 (604)
T 3k1j_A 66 IGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDEN--MPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTV 142 (604)
T ss_dssp ECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCTT--SCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------
T ss_pred EeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCccccc--CCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccc
Confidence 59999999999999999987 454 8899888776432 344788877431 111111
Q ss_pred HHHHHHHHHHccCCccccHHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy4235 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137 (197)
Q Consensus 58 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~ 137 (197)
+.+|+.............. ......-+.+|.-+......+.+|+|++|++..++....++.+|++||... |++..
T Consensus 143 ~~~nl~v~~~~~~~~~~v~----~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~ 217 (604)
T 3k1j_A 143 LVPKLLVDNCGRTKAPFID----ATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKM 217 (604)
T ss_dssp CCCEEEECCTTCSSCCEEE----CTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHH
T ss_pred cccceeeccccCCCCCEEE----cCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHH
Confidence 1111110000000000000 000011122232222223346799999999999999999999999999988 89999
Q ss_pred HHHHHHHHHHH
Q psy4235 138 ANNVVNLLKQL 148 (197)
Q Consensus 138 ~~~i~~~l~~l 148 (197)
+..+++.|.+-
T Consensus 218 q~~Ll~~Le~~ 228 (604)
T 3k1j_A 218 QQSLLTAMQEK 228 (604)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 99999998753
No 160
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.96 E-value=7.1e-11 Score=93.18 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=32.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-----------cccceEEEEecC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-----------VMSRISGYVAQQ 49 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-----------~~~~~~~~v~q~ 49 (197)
+|||||||||||++|+|++. |++|+|.++|.++... ..+..++|++|+
T Consensus 33 ~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HSCCSHHHHHHHHHHHHHHS-CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 59999999999999999998 7999999999887211 124568999974
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.95 E-value=2.8e-13 Score=109.53 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=72.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCc-ccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDR-RTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~-~~~ 75 (197)
+||||||||||+++|++... .|.|.+++.++... ...+.+++++|... ..+.+++.|++.......... ...
T Consensus 79 ~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~ 155 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155 (278)
T ss_dssp ECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred ECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence 59999999999999998764 68899988765321 12234678888753 566778888885433211000 000
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEP 129 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEP 129 (197)
.......+.++ +.+|||||+||+.+++|+.++|++ +|++
T Consensus 156 ~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 156 NDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred chHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 11112223333 245899999999999999999987 6765
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=3e-13 Score=107.76 Aligned_cols=112 Identities=14% Similarity=0.171 Sum_probs=71.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc---cccceEEEEecCC-CCCCCCCHHHHHHHHHHccCC-cccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQD-FLIEELTVLEHLQFMAKLTMD-RRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~-~~~~ 75 (197)
+||||+|||||+++|++... .|.+.+++.++... ...+.+++++|.. ...+.+++.|++......... ....
T Consensus 55 ~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~ 131 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131 (254)
T ss_dssp ECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred ECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence 49999999999999998754 68899988765221 1223467788874 356677788888443221100 0000
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPT 130 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPt 130 (197)
.....+.+.+++ ..|||||+||+.+++|+.++|++ +|++.
T Consensus 132 ~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 132 NDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred chHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 111122233333 35789999999999999999987 67765
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.91 E-value=2.8e-09 Score=89.56 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=82.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCC----------CceeEEEECCeeCCcccccceEEEEecCCCCCCCCCHHHHHHHHH-Hcc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG----------LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMA-KLT 69 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~----------~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~-~~~ 69 (197)
+|++|||||||+|.|+|.... ++.|.|.++|.++. +....|++.+.+. ..+. .+.-.. ...
T Consensus 185 vG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve-~f~~tl~~~~ 256 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVD-AFFVTLSEAK 256 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHH-HHHHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHH-HHHHHHHHHH
Confidence 599999999999999987531 35688998886541 1222455544221 1121 111000 000
Q ss_pred -------CCc--ccc--HHHHHHHHHHHHHHcCCcccc----cccCCCCCHHHHHHHHHH----HHH-hhCCCEEEEeCC
Q psy4235 70 -------MDR--RTT--WLELNKTITRVMENLGINHRR----QVQISGLSGGQRKRLALA----VQL-LTEPQILFCDEP 129 (197)
Q Consensus 70 -------~~~--~~~--~~~~~~~~~~~l~~~~l~~~~----~~~~~~LSgGq~qrv~ia----~al-~~~p~llllDEP 129 (197)
... ... .......+.++++.+++.+.. ..++..+|++++|++.++ +++ ..+|++ +|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 000 011 112223456777777764432 345667888888888877 555 334454 89
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy4235 130 TTGLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 130 ts~LD~~~~~~i~~~l~~l~~ 150 (197)
+|++|......+++.|.+...
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHhc
Confidence 999999999999999987654
No 164
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=1.1e-10 Score=89.55 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=42.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---ccceEEEEecCCCCCCCCCHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---MSRISGYVAQQDFLIEELTVLEHLQ 63 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~~~~~~ltv~e~l~ 63 (197)
+||||||||||+++|+|+.+ .+.+.+..+.... ....++|+||++..++.+++.+++.
T Consensus 13 ~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred ECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 59999999999999999853 3667776654322 2345789999988777777666544
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.74 E-value=1.2e-09 Score=91.52 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=35.1
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEE-EECCeeCCcccccceEEEEecCCCCCCCCCHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEI-LLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i-~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 60 (197)
.||||||||||+..++.... +..|.+ +++++......+.+++++.+|+..+....++.+
T Consensus 67 ~GppGsGKSTLal~la~~~~-~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIAEAQ-KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp EESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH-hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence 49999999999999998765 345554 555544322223344555555443333334433
No 166
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.73 E-value=9.8e-10 Score=95.34 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 100 ISGLSGGQRKRLALAVQ--LLT---------------EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 100 ~~~LSgGq~qrv~ia~a--l~~---------------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
.+.+||||+|-.-+|++ +++ .-.+++|||. +.+|....+..+++++++ |--+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 46799999996555543 222 2357999999 999999999999999977 6666777754
Q ss_pred cchHHhhcCeEEEEe
Q psy4235 163 TSGVFEKFDTVSLLA 177 (197)
Q Consensus 163 ~~~~~~~~d~v~~l~ 177 (197)
.+..++|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3578889887774
No 167
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.72 E-value=1.8e-08 Score=84.17 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=50.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCc
Q psy4235 97 QVQISGLSGGQRKRLALAVQLLTEPQILFCD-EPTTGLDSYSANNVVNLLKQLACESRIVICAI--HQPT 163 (197)
Q Consensus 97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllD-EPts~LD~~~~~~i~~~l~~l~~~~~~iii~t--h~~~ 163 (197)
+.++..+|++++|++. +.+...++-++++| +|.+++|......+++.+..... +..+|++. ||..
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 3456778999998876 55556778889999 99999999998888887777543 66777777 7754
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.65 E-value=6.6e-08 Score=83.87 Aligned_cols=58 Identities=29% Similarity=0.366 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCC
Q psy4235 105 GGQRKRLALAVQLLTEPQILFCDEPT----------TGLDSYSANNVVNLLKQLA----CESRIVICAIHQP 162 (197)
Q Consensus 105 gGq~qrv~ia~al~~~p~llllDEPt----------s~LD~~~~~~i~~~l~~l~----~~~~~iii~th~~ 162 (197)
+++++|..+++|....|.+|++||+. ++.|....+.+.+++..+. ..+..+|.+||.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 56778888999999999999999993 4677766666677776653 2356778888875
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.62 E-value=7.9e-10 Score=84.94 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=42.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc--ccceEEEEecCCCCCCCCCHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV--MSRISGYVAQQDFLIEELTVLEHLQF 64 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~--~~~~~~~v~q~~~~~~~ltv~e~l~~ 64 (197)
+||||||||||+++|++.+ |.+.++|.++.... .....++++|+...++.+++.+++..
T Consensus 35 ~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 5999999999999999864 77899887764321 12235888887666666666666654
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.58 E-value=7.3e-08 Score=88.22 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=58.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcchHHhhcCe
Q psy4235 97 QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICA-IHQPTSGVFEKFDT 172 (197)
Q Consensus 97 ~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~-th~~~~~~~~~~d~ 172 (197)
+..+.-+|.|+.+|..++.+++.+++++|+|||.. +||......+++.+.......++++++ ||+. +.+..+++.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 34566789999999999999999999999999996 999887777776666655445677775 7765 466677764
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.56 E-value=4.3e-09 Score=80.86 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcch-HHhhcCeEEEEeC
Q psy4235 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG-VFEKFDTVSLLAH 178 (197)
Q Consensus 104 SgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~-~~~~~d~v~~l~~ 178 (197)
+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.+... .+..+|+.+|...+. +...||.++++..
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678888888888887777543322 3345666666666555433 255777778765421 2577899988854
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.47 E-value=5e-07 Score=75.20 Aligned_cols=43 Identities=9% Similarity=-0.043 Sum_probs=34.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCC
Q psy4235 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLAC---ESRIVICAIHQP 162 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~---~~~~iii~th~~ 162 (197)
.+|.+|++||+... |......+.+++.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876654 467888888876
No 173
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.44 E-value=2.5e-09 Score=94.40 Aligned_cols=33 Identities=39% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee-EEE-ECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG-EIL-LNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G-~i~-~~g~~~ 34 (197)
+|+||||||||+++|++.+. +++| +|. ++|.++
T Consensus 375 iG~sGSGKSTLar~La~~L~-~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAARLM-EMGGRCVTLLDGDIV 409 (552)
T ss_dssp EESSCHHHHHHHHHHHHHHH-TTCSSCEEEESSHHH
T ss_pred ECCCCChHHHHHHHHHHhhc-ccCCceEEEECCcHH
Confidence 59999999999999999987 5776 774 888664
No 174
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.38 E-value=1.6e-08 Score=80.64 Aligned_cols=49 Identities=31% Similarity=0.257 Sum_probs=39.5
Q ss_pred CCCCCCcHHHHHHHHh---cCcCCCceeEEE--------ECCeeCCcc----cccceEEEEecCC
Q psy4235 1 MSPSGAGKTTLLAALN---KRVKGLVQGEIL--------LNGCPISRT----VMSRISGYVAQQD 50 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~---g~~~~~~~G~i~--------~~g~~~~~~----~~~~~~~~v~q~~ 50 (197)
+|||||||||++++|+ |+.. +++|.|+ .+|.++... .+++.+++++|..
T Consensus 33 ~G~~GsGKSTl~k~La~~Lg~~~-~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 33 DGPSGAGKGTLCKALAESLNWRL-LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCEE-EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHhcCCCc-CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 5999999999999999 9887 7999998 899887421 2445678888753
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.37 E-value=2e-07 Score=80.08 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=37.7
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235 119 TEPQILFCDEPTTGLDS-YSANNVVNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 119 ~~p~llllDEPts~LD~-~~~~~i~~~l~~l~~~~~~iii~th~~~ 163 (197)
.+|++|++||+..-.+. ..+..++..+..+...+..+|++||.+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 48999999999876654 6788899999988877889999999754
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.36 E-value=4.6e-08 Score=74.17 Aligned_cols=25 Identities=40% Similarity=0.419 Sum_probs=20.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeE
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGE 26 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~ 26 (197)
+||||||||||+++|+|+++ +..|.
T Consensus 7 ~GpsGaGKsTl~~~L~~~~~-~~~~~ 31 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAEYP-DSFGF 31 (186)
T ss_dssp ESSSSSSHHHHHHHHHHHCG-GGEEC
T ss_pred ECCCCCCHHHHHHHHHhhCC-ccceE
Confidence 59999999999999999886 44443
No 177
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.34 E-value=5e-10 Score=94.50 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=64.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcccccceEEEEecCCC-CCCCCCHHHHHHHHHHccCCccccHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMDRRTTWLEL 79 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 79 (197)
+||||||||||+++|+|. .+|++..-..+ ...+...++++||... ++.+.+....+. ..... ......
T Consensus 175 ~G~~GsGKSTl~~~l~~~----~~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~~~~~--r~l~~---~~~~~~ 243 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLEL----CGGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGTGGES--RDLPS---GQGINN 243 (377)
T ss_dssp ECSTTSSHHHHHHHHHHH----HCCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCSTTTT--TTCCC---CSHHHH
T ss_pred ECCCCCCHHHHHHHHHhh----cCCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHHHHHH--hhccc---cCcchH
Confidence 499999999999999974 45776651111 1111123566676643 233332211100 00000 000000
Q ss_pred HHHHHHHHHH---cCCc-------------ccccccCCCCCHHHHHHHHHHHHHhhCCCEEE-EeCCCC
Q psy4235 80 NKTITRVMEN---LGIN-------------HRRQVQISGLSGGQRKRLALAVQLLTEPQILF-CDEPTT 131 (197)
Q Consensus 80 ~~~~~~~l~~---~~l~-------------~~~~~~~~~LSgGq~qrv~ia~al~~~p~lll-lDEPts 131 (197)
...+...++. +.+. ...+.....+++|++||+..+++++..|++++ ||+|+.
T Consensus 244 ~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 244 LDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 1122233320 0011 23455667899999999998877888888887 888875
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.33 E-value=8.9e-10 Score=96.13 Aligned_cols=113 Identities=13% Similarity=0.153 Sum_probs=69.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCccc---ccceEEEEecCCC-CCCCCCHHHHHHHHHHccCC-cccc
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV---MSRISGYVAQQDF-LIEELTVLEHLQFMAKLTMD-RRTT 75 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~-~~~~ 75 (197)
+||||+|||||+++|++... .+.+.+++.++.... ..+.+.++||... ..|.+.+.|++......... ....
T Consensus 70 ~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~ 146 (499)
T 2dhr_A 70 VGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 146 (499)
T ss_dssp ECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTS
T ss_pred ECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCC
Confidence 49999999999999998754 578899887764321 1233566777643 44555566665332111100 0001
Q ss_pred HHHHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy4235 76 WLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTT 131 (197)
Q Consensus 76 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llllDEPts 131 (197)
.......+.+++. .||||++|+..+++|..++|++ |||+..
T Consensus 147 ~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 147 NDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp SHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred cHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 1122233444443 3678888888888888888887 788864
No 179
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.27 E-value=1.4e-06 Score=72.37 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEe
Q psy4235 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAI 159 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~~~iii~t 159 (197)
+.||.++++|+..|...+.+++++|.|+|... ..++...++.++.+ +..+||+-
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 47999999999999999999999999998654 33566666666543 45555553
No 180
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.25 E-value=1.7e-07 Score=70.33 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG 25 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G 25 (197)
+||||||||||+++|.+++. +..|
T Consensus 32 ~G~NGsGKStll~ai~~~l~-~~~~ 55 (182)
T 3kta_A 32 VGANGSGKSNIGDAILFVLG-GLSA 55 (182)
T ss_dssp EECTTSSHHHHHHHHHHHTT-CCCT
T ss_pred ECCCCCCHHHHHHHHHHHHc-CCcc
Confidence 59999999999999998776 3444
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=4.3e-06 Score=71.59 Aligned_cols=32 Identities=25% Similarity=0.147 Sum_probs=24.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP 33 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~ 33 (197)
+|||||||||++..|+..+. +..++|.+-+.+
T Consensus 103 vG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D 134 (433)
T 3kl4_A 103 VGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAAD 134 (433)
T ss_dssp CCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecC
Confidence 59999999999999998876 455566554443
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.19 E-value=2.8e-07 Score=70.28 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG 25 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G 25 (197)
+||||||||||+++|++.+. |+.|
T Consensus 12 ~G~~GsGKSTl~~~L~~~~~-~~~~ 35 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDPS-TSYK 35 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCTT-CCEE
T ss_pred ECCCCCCHHHHHHHHHHhhC-CCeE
Confidence 59999999999999999886 4555
No 183
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.16 E-value=1.4e-05 Score=64.29 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCCEEEEEecCC---cchHH
Q psy4235 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDS----------YSANNVVNLLKQLAC----ESRIVICAIHQP---TSGVF 167 (197)
Q Consensus 105 gGq~qrv~ia~al~~~p~llllDEPts~LD~----------~~~~~i~~~l~~l~~----~~~~iii~th~~---~~~~~ 167 (197)
++++.+..+..+...+|.+|++||+.+-++. .....++..+..... .+..+|.+|+.+ ...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 4566677777777889999999999776543 222334444444322 123456666653 22344
Q ss_pred hhcCeEEEE
Q psy4235 168 EKFDTVSLL 176 (197)
Q Consensus 168 ~~~d~v~~l 176 (197)
+.+++++.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 556666554
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.15 E-value=3.9e-07 Score=68.66 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEEC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLN 30 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~ 30 (197)
+||||||||||+++|++..++...|.|...
T Consensus 11 ~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp ECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred ECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 599999999999999998752256666543
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.12 E-value=4.9e-07 Score=74.60 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCCcc-------cc-----cceEEEE-ecCCCCCCCCCHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT-------VM-----SRISGYV-AQQDFLIEELTVLEHLQFM 65 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~~~-------~~-----~~~~~~v-~q~~~~~~~ltv~e~l~~~ 65 (197)
+|+||+||||++..|++.+. +..|+|.+.+.++... .+ +..+.++ +|.....|..++.+++...
T Consensus 111 vG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKA 187 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHHHH
Confidence 49999999999999999887 5789999988876431 12 3457888 7766566655667776654
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.12 E-value=1e-05 Score=67.36 Aligned_cols=58 Identities=5% Similarity=0.074 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q psy4235 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIH 160 (197)
Q Consensus 102 ~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-~~iii~th 160 (197)
..+..++++..+++..+.+|+++|+.-..+..|... ....++++.+...+ .++++++.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 356788999999999999999888874444455443 45567777776555 46666665
No 187
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.11 E-value=3e-07 Score=71.90 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=30.4
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCcchHHhhcCeEEEEeCCcEEEEecChhHH
Q psy4235 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC-----ESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKV 191 (197)
Q Consensus 117 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~~~iii~th~~~~~~~~~~d~v~~l~~gg~i~~~g~~~~~ 191 (197)
++..|+..+++|+..+.|..+...+.+.++.... .....+++.|+. +.+.+.+++++-... ++.....+.+++
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~-e~~~~~l~~~i~~~~-~~~~~~~~~~~~ 222 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDI-EETADRISNILRAEQ-MKTCRQVGLREL 222 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSH-HHHHHHHHHHHHHHH-TBGGGEESHHHH
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCH-HHHHHHHHHHHHHHh-hccccCcchhhH
Confidence 3556677778888999888777777766654432 123455666654 345555555443322 333233444444
Q ss_pred H
Q psy4235 192 L 192 (197)
Q Consensus 192 ~ 192 (197)
+
T Consensus 223 ~ 223 (231)
T 3lnc_A 223 L 223 (231)
T ss_dssp H
T ss_pred h
Confidence 3
No 188
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.09 E-value=3.1e-07 Score=80.34 Aligned_cols=139 Identities=11% Similarity=0.043 Sum_probs=74.5
Q ss_pred CCCCCCcHHHHHHHHhcC----------------------c-C--------------CCceeEEEECCeeCCccc----c
Q psy4235 1 MSPSGAGKTTLLAALNKR----------------------V-K--------------GLVQGEILLNGCPISRTV----M 39 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~----------------------~-~--------------~~~~G~i~~~g~~~~~~~----~ 39 (197)
+|+||||||||+.+|..+ + . ...++.+++||.+++... .
T Consensus 66 ~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~ 145 (517)
T 4ad8_A 66 TGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWA 145 (517)
T ss_dssp EESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHHh
Confidence 599999999999999554 2 1 012567888888876421 2
Q ss_pred cceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccHHHHHHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHh
Q psy4235 40 SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG-INHRRQVQISGLSGGQRKRLALAVQLL 118 (197)
Q Consensus 40 ~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGq~qrv~ia~al~ 118 (197)
...+.+++|...+....+... ..|.-..................++++.+. +..........++-.+.|...|..+
T Consensus 146 ~~li~i~~q~~~~~l~~~~~r-r~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~-- 222 (517)
T 4ad8_A 146 QGRLTIHWQHSAVSLLSPANQ-RGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLAFQVQEISEV-- 222 (517)
T ss_dssp TTTEEEESGGGGGTTTSHHHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhheEEeCCchHHhcCCHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--
Confidence 234678899866555433322 222211110000011111222333333321 1111222345678888888888887
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
.|.+...+.+.+.++.++..+..+
T Consensus 223 -------------~l~~~E~e~L~~~~~~L~~~~~~~ 246 (517)
T 4ad8_A 223 -------------SPDPGEEEGLNTELSRLSNLHESS 246 (517)
T ss_dssp -------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred -------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 355556777888888876655443
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.09 E-value=7.1e-08 Score=72.02 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=24.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS 35 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~ 35 (197)
+|+|||||||++++|++.+ |.+.+++.++.
T Consensus 14 ~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~ 43 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLH 43 (175)
T ss_dssp ECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGC
T ss_pred EcCCCCCHHHHHHHHHHhh-----CcEEEeCcccc
Confidence 5999999999999998753 66788876653
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.06 E-value=1.1e-06 Score=79.10 Aligned_cols=118 Identities=10% Similarity=0.016 Sum_probs=65.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCC-CceeEEEECCeeCCcc---cccceEEEEecCCCCCCCCCHHHHHHHHHHccCCccccH
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTW 76 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~-~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 76 (197)
+|+||+|||||++.|++...+ ...|+| .+|..+... ..++.+++.+|...++.. ++..|
T Consensus 15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n--------------- 77 (665)
T 2dy1_A 15 VGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF--------------- 77 (665)
T ss_dssp EESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---------------
T ss_pred ECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---------------
Confidence 599999999999999976541 256887 566555321 123445666655443321 11111
Q ss_pred HHHHHHHHHHHHHcCCcccccccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q psy4235 77 LELNKTITRVMENLGINHRRQVQIS-GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155 (197)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~i 155 (197)
..+.+.. .++ .......-..+..++++| |+.++++.+.. + ++.+...+..+
T Consensus 78 ------------------liDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~---~~~~~~~~ip~ 129 (665)
T 2dy1_A 78 ------------------LLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-A---WTVAERLGLPR 129 (665)
T ss_dssp ------------------EEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-H---HHHHHHTTCCE
T ss_pred ------------------EEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-H---HHHHHHccCCE
Confidence 1111100 010 111222234677888899 99999987652 3 33333456777
Q ss_pred EEEecCCc
Q psy4235 156 ICAIHQPT 163 (197)
Q Consensus 156 ii~th~~~ 163 (197)
|++.|..+
T Consensus 130 ilv~NKiD 137 (665)
T 2dy1_A 130 MVVVTKLD 137 (665)
T ss_dssp EEEEECGG
T ss_pred EEEecCCc
Confidence 78888754
No 191
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.00 E-value=2.3e-06 Score=69.85 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCCcchHHhhcCeEE
Q psy4235 103 LSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDSYS-ANNVVNLLKQLACE-SR--IVICAIHQPTSGVFEKFDTVS 174 (197)
Q Consensus 103 LSgGq~qrv~ia~al~--~~p~llllDEPts~LD~~~-~~~i~~~l~~l~~~-~~--~iii~th~~~~~~~~~~d~v~ 174 (197)
+|.|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++++. +. .+.+++|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 898886 4566666 78999998 8999887 67788888888764 42 455566654 35666666553
No 192
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.99 E-value=3.3e-07 Score=70.09 Aligned_cols=33 Identities=36% Similarity=0.598 Sum_probs=27.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEE--EECCeeCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEI--LLNGCPIS 35 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i--~~~g~~~~ 35 (197)
+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 31 ~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVR 65 (200)
T ss_dssp ECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchhh
Confidence 59999999999999999875 56777 88877653
No 193
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.97 E-value=9.9e-07 Score=69.03 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~ 34 (197)
.|+||||||||+++|+|. .|+|.+.+++.
T Consensus 26 ~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred ECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 499999999999999986 57788888775
No 194
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.97 E-value=1.9e-07 Score=72.37 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=36.2
Q ss_pred CCCCCCcHHHHHHHHhcCc---CCCceeEEEE--------CCeeCCc----ccccceEEEEecCC
Q psy4235 1 MSPSGAGKTTLLAALNKRV---KGLVQGEILL--------NGCPISR----TVMSRISGYVAQQD 50 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~---~~~~~G~i~~--------~g~~~~~----~~~~~~~~~v~q~~ 50 (197)
+|||||||||+.++|++.+ . ++.|.+.. +|.++.. ..+.+.+++++|++
T Consensus 11 ~G~~GsGKSTl~~~L~~~~g~~~-~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEALQWHL-LDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp ECCTTSSHHHHHHHHHHHHTCEE-EEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCCCc-ccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5999999999999999765 4 57888877 6766642 12345578888764
No 195
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.91 E-value=8.9e-07 Score=67.84 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=27.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~ 34 (197)
+|+||||||||+++|++.+. +..|.|.+.+.+.
T Consensus 28 ~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQTLR-EQGISVCVFHMDD 60 (201)
T ss_dssp EECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccCc
Confidence 49999999999999999886 5678887766553
No 196
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.90 E-value=1.6e-05 Score=60.32 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=29.0
Q ss_pred hCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCCEEEEEecCCcchHHh
Q psy4235 119 TEPQILFCDEPTT-GLDSYSANNVV-NLLKQLACESRIVICAIHQPTSGVFE 168 (197)
Q Consensus 119 ~~p~llllDEPts-~LD~~~~~~i~-~~l~~l~~~~~~iii~th~~~~~~~~ 168 (197)
.++++|++||+-. .++...+..++ .++......+..+|++|+.....+..
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 4678999999932 34443344444 46655445566777877765444433
No 197
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.89 E-value=8.2e-06 Score=69.86 Aligned_cols=142 Identities=12% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCCCCCcHHHHHHHHhcCcC-----------CCceeEEEECCeeCC---cccccceEEEEecCCCCCCCCCHHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAALNKRVK-----------GLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVLEHLQFMA 66 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~-----------~~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~ 66 (197)
+|+||+|||||+|.|+|... .+.+|.+.++|.++. ....++..++.+|....|..++..+++...-
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad 265 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKAD 265 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCS
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCC
Confidence 69999999999999998742 135799999998652 2222333445556555555555555554421
Q ss_pred Hc----cCCccccHHHHHHHHHHHHHHcCCc-----ccccccC-CCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q psy4235 67 KL----TMDRRTTWLELNKTITRVMENLGIN-----HRRQVQI-SGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLD 134 (197)
Q Consensus 67 ~~----~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~-~~LSgGq~qrv~ia~al~--~~p~llllDEPts~LD 134 (197)
.. ........ ....+.+.+...+.. +..|..- ..-+.-+- .-.+++.+. ...+++ ++|++.
T Consensus 266 ~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~SA~~ 338 (439)
T 1mky_A 266 VVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----FTSADK 338 (439)
T ss_dssp EEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----ECBTTT
T ss_pred EEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----EEECCC
Confidence 00 00011111 123445555555532 1222111 01111111 113334332 334443 489999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4235 135 SYSANNVVNLLKQLA 149 (197)
Q Consensus 135 ~~~~~~i~~~l~~l~ 149 (197)
-....++++.+.+..
T Consensus 339 g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 339 GWNIDRMIDAMNLAY 353 (439)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888888876654
No 198
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.87 E-value=8.6e-05 Score=57.93 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=29.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecC
Q psy4235 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAIHQ 161 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~~~iii~th~ 161 (197)
.+|+++|+..+.+.++......+..++..+... ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 378999999998888887666665555444321 3577888874
No 199
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.85 E-value=3.1e-05 Score=63.24 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=34.2
Q ss_pred hCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 119 TEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 119 ~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
.++++|++||+-. .-+...+..++..+..+...+..+|++++..
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5699999999865 2344778889999988877777788877754
No 200
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.83 E-value=2.6e-06 Score=70.47 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
.||+|+|||||++.+++...
T Consensus 51 ~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp EECTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998654
No 201
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.82 E-value=3.6e-06 Score=69.42 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+||||||||||+++|++++.
T Consensus 98 ~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp ECCTTSSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhc
Confidence 59999999999999999876
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.79 E-value=4.7e-06 Score=64.08 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+||||||||||++.|++..+
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCT
T ss_pred ECcCCCCHHHHHHHHHhhCC
Confidence 59999999999999998764
No 203
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.77 E-value=8.6e-06 Score=63.73 Aligned_cols=67 Identities=21% Similarity=0.045 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcC
Q psy4235 103 LSGGQRKRLALAVQLLTEPQILFCDEPTT-GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171 (197)
Q Consensus 103 LSgGq~qrv~ia~al~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d 171 (197)
.+-|...+.. ...+.+.+++++||.-. ++|.......++.+.....+-.+++++..-+.+...++++
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 3456655553 33578999999999976 5777666444444444333334555554444434444443
No 204
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.77 E-value=6.2e-05 Score=61.67 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE--EEEEe
Q psy4235 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRI--VICAI 159 (197)
Q Consensus 103 LSgGq~qrv~ia~al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~~~--iii~t 159 (197)
||.++++|+..|...+.++++++.|+|... ...+...++++.++ +.. +|++-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID 188 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMID 188 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 788888888888888888888888888533 34455666666544 444 55553
No 205
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.76 E-value=7.5e-06 Score=62.98 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=18.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+||||||||||++.|++.++
T Consensus 14 ~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp ECCTTSCHHHHHHHHHHSTT
T ss_pred ECcCCCCHHHHHHHHHhhCC
Confidence 59999999999999999876
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.75 E-value=7.6e-06 Score=60.56 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+||||||||||+++|++.+.
T Consensus 10 ~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp ECCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 59999999999999998765
No 207
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.71 E-value=0.00026 Score=58.60 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=43.5
Q ss_pred HHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHHHhC-CCEEEEEecCCcc-------
Q psy4235 109 KRLALAVQLL----TEPQILFCDEPTTGLDSY------------SANNVVNLLKQLACE-SRIVICAIHQPTS------- 164 (197)
Q Consensus 109 qrv~ia~al~----~~p~llllDEPts~LD~~------------~~~~i~~~l~~l~~~-~~~iii~th~~~~------- 164 (197)
+.+..++.++ .+++++++|+.++-.... ...++...|+.++++ +.+||++.|....
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~ 283 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 283 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCcccc
Confidence 4555556665 579999999999865432 124555556666554 7787777764321
Q ss_pred -----------hHHhhcCeEEEEeC
Q psy4235 165 -----------GVFEKFDTVSLLAH 178 (197)
Q Consensus 165 -----------~~~~~~d~v~~l~~ 178 (197)
.+...+|-++.+..
T Consensus 284 ~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 284 QADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp ---------CCTTTTSSSEEEEEEE
T ss_pred CCCCCcCCchHHHHHhCCEEEEEEE
Confidence 13456787777764
No 208
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.69 E-value=3.1e-05 Score=59.68 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=30.6
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCC
Q psy4235 119 TEPQILFCDEPTTGL-DSYSANNVVNLLKQLACESRI-VICAIHQP 162 (197)
Q Consensus 119 ~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~~~-iii~th~~ 162 (197)
.+|.++++||...-- +......+.+.+......+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 578999999965422 233377788888887766655 77777743
No 209
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.60 E-value=7.7e-06 Score=68.12 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=26.5
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~ 34 (197)
+|++|||||||+|.|+|... +..|+|.+.+.+.
T Consensus 80 vG~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp 112 (349)
T 2www_A 80 SGPPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDP 112 (349)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred EcCCCCCHHHHHHHHHHHhh-hcCCeEEEEeecC
Confidence 59999999999999999776 4667776665543
No 210
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.57 E-value=0.00032 Score=57.56 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CCEEEEEecCCcc-------
Q psy4235 108 RKRLALAVQLL---TEPQILFCDEPTTGLDS--------YS----ANNVVNLLKQLACE-SRIVICAIHQPTS------- 164 (197)
Q Consensus 108 ~qrv~ia~al~---~~p~llllDEPts~LD~--------~~----~~~i~~~l~~l~~~-~~~iii~th~~~~------- 164 (197)
.+.+..++.++ .+|+++++|+.++-... .. ..+++..|+.++++ +.+||++.|-...
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~ 267 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGD 267 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----------
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCC
Confidence 35677777777 67999999999875432 11 23455555565544 7788887664311
Q ss_pred --------hHHhhcCeEEEEeC
Q psy4235 165 --------GVFEKFDTVSLLAH 178 (197)
Q Consensus 165 --------~~~~~~d~v~~l~~ 178 (197)
.+.+.+|.++.+..
T Consensus 268 ~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 268 PTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp --------------CEEEEEEE
T ss_pred CCCCCchHHHHhhCcEEEEEEE
Confidence 13445677777753
No 211
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=5e-07 Score=74.36 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q psy4235 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163 (197)
Q Consensus 120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~ 163 (197)
+++++++|| ...+++..+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 667999999 788999888888888877643 345666666543
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.55 E-value=9e-05 Score=68.15 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+||||||||||+++|++.+.
T Consensus 244 ~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 244 YGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CSCTTSSHHHHHHHHHHTTT
T ss_pred ECcCCCCHHHHHHHHHHHcC
Confidence 59999999999999999765
No 213
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.52 E-value=3.9e-05 Score=58.53 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|||||||++.|++.+
T Consensus 27 ~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EESTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999999865
No 214
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=0.00018 Score=58.30 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||+|+|||||.++|++..
T Consensus 55 ~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp ECSSSSSHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHHHHh
Confidence 4999999999999999754
No 215
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.51 E-value=2.6e-05 Score=66.53 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=19.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCce
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQ 24 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~ 24 (197)
+||||||||||+++|+++.. +.+
T Consensus 32 ~G~nG~GKstll~ai~~~~~-~~~ 54 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAISFVLG-VRS 54 (430)
T ss_dssp ECSTTSSHHHHHHHHHHHTT-C--
T ss_pred ECCCCCCHHHHHHHHHhhhc-ccc
Confidence 59999999999999999876 444
No 216
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.50 E-value=3.2e-05 Score=56.55 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=15.0
Q ss_pred CCCCCCcHHHHHHHHh
Q psy4235 1 MSPSGAGKTTLLAALN 16 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~ 16 (197)
+|||||||||++.+|.
T Consensus 29 ~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAIL 44 (149)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999997
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.48 E-value=0.0005 Score=57.33 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=41.2
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---H-hCCCEEEEEecCCcc-----
Q psy4235 109 KRLALAVQLL--TEPQILFCDEPTTGLDSY-------------SANNVVNLLKQL---A-CESRIVICAIHQPTS----- 164 (197)
Q Consensus 109 qrv~ia~al~--~~p~llllDEPts~LD~~-------------~~~~i~~~l~~l---~-~~~~~iii~th~~~~----- 164 (197)
+-..+++.++ .+++++++|++++-.... ..+.+.+.++.+ . +.+.+||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3445556554 689999999998766321 112344444444 3 447888887764221
Q ss_pred ----------hHHhhcCeEEEEeC
Q psy4235 165 ----------GVFEKFDTVSLLAH 178 (197)
Q Consensus 165 ----------~~~~~~d~v~~l~~ 178 (197)
.+...+|-++.+..
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r 231 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRR 231 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEE
Confidence 24567887777765
No 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.47 E-value=1.6e-05 Score=66.49 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG 31 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g 31 (197)
+|+||+|||||++.|.|... ...+.+..++
T Consensus 43 vG~~g~GKSTLln~L~~~~~-~~~~~~~~~~ 72 (361)
T 2qag_A 43 VGESGLGKSTLINSLFLTDL-YPERVIPGAA 72 (361)
T ss_dssp CCCTTSCHHHHHHHHTTCCC-----------
T ss_pred EcCCCCCHHHHHHHHhCCCC-CCCCcccCCC
Confidence 69999999999999987644 3444443333
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.44 E-value=0.0029 Score=54.09 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecCCc----
Q psy4235 101 SGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDS----------YSANNVVNLLKQLACE-SRIVICAIHQPT---- 163 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al~--~~p~llllDEPts~LD~----------~~~~~i~~~l~~l~~~-~~~iii~th~~~---- 163 (197)
..+|..+. .+.++.+. .+++++++|..+.-... .....+.+.|+.++++ +.+||+++|-..
T Consensus 291 ~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~ 368 (444)
T 2q6t_A 291 PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA 368 (444)
T ss_dssp TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence 45676654 34455554 58999999998754332 1224567777777765 778888877311
Q ss_pred --------------chHHhhcCeEEEEeC
Q psy4235 164 --------------SGVFEKFDTVSLLAH 178 (197)
Q Consensus 164 --------------~~~~~~~d~v~~l~~ 178 (197)
..+.+.||.|+++..
T Consensus 369 r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 369 RPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp SSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 024677999998853
No 220
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=7.2e-05 Score=55.57 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.++|.
T Consensus 13 vG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp ECSTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999984
No 221
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.41 E-value=0.00012 Score=53.56 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.++|..
T Consensus 9 vG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999864
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.38 E-value=4.5e-05 Score=67.08 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=26.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP 33 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~ 33 (197)
+||||+|||||+++|++... +..|.|.+.|..
T Consensus 114 ~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~~~ 145 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIAKSLG-RKFVRISLGGVR 145 (543)
T ss_dssp ESSSSSSHHHHHHHHHHHHT-CEEEEECCCC--
T ss_pred ECCCCCCHHHHHHHHHHhcC-CCeEEEEecccc
Confidence 49999999999999999887 678998887743
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.30 E-value=0.00015 Score=53.57 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.++|..
T Consensus 10 vG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 224
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.0012 Score=52.48 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---hCCC-EEEEEecC
Q psy4235 115 VQLLTEPQILFCDEPTTG----------LDSYSANNVVNLLKQLA---CESR-IVICAIHQ 161 (197)
Q Consensus 115 ~al~~~p~llllDEPts~----------LD~~~~~~i~~~l~~l~---~~~~-~iii~th~ 161 (197)
.+....|.+|++||.-.- -+...+..+..++..+. ..+. .+|.+|+.
T Consensus 105 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~ 165 (285)
T 3h4m_A 105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 334457889999997432 36666777888887763 2233 44555543
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.29 E-value=6e-05 Score=57.25 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|+|||||||+.++|++
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 49999999999999998
No 226
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.28 E-value=6.4e-05 Score=62.84 Aligned_cols=17 Identities=47% Similarity=0.552 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+||||||||||+++|.+
T Consensus 32 ~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 32 YGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCChhHHHHHHHH
Confidence 59999999999999987
No 227
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.28 E-value=3.4e-05 Score=57.52 Aligned_cols=32 Identities=41% Similarity=0.452 Sum_probs=24.4
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee--EEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG--EILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G--~i~~~g~~~ 34 (197)
+|++||||||+.++|++.+. + .| .|.+++..+
T Consensus 11 ~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGDNI 44 (179)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECChHH
Confidence 49999999999999998764 2 45 566665544
No 228
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.27 E-value=0.00026 Score=58.42 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||+|+|||||++.++...
T Consensus 50 ~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999998654
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.27 E-value=4e-05 Score=58.80 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=26.9
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCcee--EEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQG--EILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G--~i~~~g~~~ 34 (197)
+|++||||||+.+.|++.+. +..| .+.+++..+
T Consensus 31 ~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGDNI 65 (211)
T ss_dssp ECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhc-cccCCcEEEECChHH
Confidence 49999999999999998876 4678 778776443
No 230
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.24 E-value=0.002 Score=50.31 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||+|+|||||.+.++...
T Consensus 45 ~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 3999999999999998643
No 231
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.19 E-value=0.00012 Score=56.21 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=14.7
Q ss_pred CCCCCCcHHHHHHHHh
Q psy4235 1 MSPSGAGKTTLLAALN 16 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~ 16 (197)
+|||||||||++.+|.
T Consensus 29 ~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 29 IGQNGSGKSSLLDAIL 44 (203)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 5999999999999985
No 232
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.17 E-value=0.0002 Score=60.64 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCCCCCcHHHHHHHHhcC-----------cCCCceeEEEECCe
Q psy4235 1 MSPSGAGKTTLLAALNKR-----------VKGLVQGEILLNGC 32 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~-----------~~~~~~G~i~~~g~ 32 (197)
+|+||+|||||+++|+|. .. |..|.+.+.+.
T Consensus 28 VG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~-p~~g~v~v~~~ 69 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNSQASAENFPFCTID-PNESRVPVPDE 69 (396)
T ss_dssp ECCSSSSHHHHHHHHHC-------------C-CSEEEEECCCH
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCccccC-ceeEEEEECCc
Confidence 699999999999999987 33 57788887764
No 233
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.14 E-value=0.0034 Score=52.04 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||.|+|||||.++|+...
T Consensus 123 ~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 123 FGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp ESSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998643
No 234
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.12 E-value=5.6e-05 Score=62.57 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=25.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~ 34 (197)
+|+||||||||++.|++.+. +..|+|.+-+.+.
T Consensus 62 ~G~~g~GKSTl~~~l~~~~~-~~~~~v~v~~~d~ 94 (341)
T 2p67_A 62 TGTPGAGKSTFLEAFGMLLI-REGLKVAVIAVDP 94 (341)
T ss_dssp EECTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred EcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeecC
Confidence 59999999999999998876 4566666655543
No 235
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.09 E-value=0.00015 Score=54.99 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++||||||+.+.|++.+
T Consensus 24 ~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998654
No 236
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.08 E-value=0.0013 Score=56.93 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS 35 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~ 35 (197)
+|||||||||||++|+|+++ |++|+|.++|.++.
T Consensus 35 iG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA 68 (483)
T ss_dssp ECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred ECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence 59999999999999999998 79999999998874
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.00016 Score=54.23 Aligned_cols=33 Identities=33% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCC--CceeEEEECCee
Q psy4235 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCP 33 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~--~~~G~i~~~g~~ 33 (197)
+|++|||||||++.|.+.+.+ ..-|.|..++.+
T Consensus 12 ~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 499999999999999986531 134777776543
No 238
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.07 E-value=0.00018 Score=53.52 Aligned_cols=19 Identities=47% Similarity=0.629 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.++|..
T Consensus 8 vG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC-
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999864
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.05 E-value=0.00019 Score=54.70 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+||||||||||.+.|+..++
T Consensus 18 ~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp ECCTTSCHHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhCc
Confidence 59999999999999987653
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.03 E-value=0.00046 Score=53.86 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=39.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcchHHhhcCeEEEEe
Q psy4235 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH---------QPTSGVFEKFDTVSLLA 177 (197)
Q Consensus 120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th---------~~~~~~~~~~d~v~~l~ 177 (197)
+++++++||--. |+.. +.+.++.++..+..||++-| .....+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 5543 44555666666899999998 44456788999998763
No 241
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.02 E-value=0.0002 Score=54.38 Aligned_cols=19 Identities=42% Similarity=0.520 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++||||||+.+.|+..+
T Consensus 31 ~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHc
Confidence 5999999999999999754
No 242
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.98 E-value=0.00012 Score=54.74 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=20.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEE
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEI 27 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i 27 (197)
+|++||||||+.+.|+..+. ...+.+
T Consensus 19 ~G~~GsGKsT~~~~L~~~l~-~~~~~~ 44 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADLLQ-KEGYRV 44 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred EcCCCCCHHHHHHHHHHHHH-hcCCeE
Confidence 49999999999999998765 344544
No 243
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00034 Score=55.00 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCee
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCP 33 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~ 33 (197)
.||+|+|||||+++|++....+ -+.+++.+
T Consensus 51 ~G~~GtGKT~la~~la~~~~~~---~~~i~~~~ 80 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAGEAKVP---FFTISGSD 80 (257)
T ss_dssp ECCTTSCHHHHHHHHHHHHTCC---EEEECSCS
T ss_pred ECcCCCCHHHHHHHHHHHcCCC---EEEEeHHH
Confidence 4999999999999999865422 25555443
No 244
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.89 E-value=0.00032 Score=51.33 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++||||||+.+.|+..+
T Consensus 7 ~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp ECSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998653
No 245
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.84 E-value=0.00034 Score=55.52 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|++||||||+.++|++.+.
T Consensus 54 ~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ECSTTSCHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhcC
Confidence 59999999999999997543
No 246
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.83 E-value=0.00066 Score=50.79 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCCCCcHHHHHHHHhcCc----C---CCceeEEEECCee
Q psy4235 1 MSPSGAGKTTLLAALNKRV----K---GLVQGEILLNGCP 33 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~----~---~~~~G~i~~~g~~ 33 (197)
+|++|+|||||++.+.+-. . .++.+++.++|..
T Consensus 29 vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp EESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 5999999999999998732 1 1245677777643
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.83 E-value=0.00039 Score=52.75 Aligned_cols=18 Identities=50% Similarity=0.702 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+||||||||||++.|...
T Consensus 7 ~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999998754
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.81 E-value=0.00021 Score=60.97 Aligned_cols=34 Identities=29% Similarity=0.190 Sum_probs=29.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS 35 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~ 35 (197)
+|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus 104 ~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 104 VGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQ 137 (425)
T ss_dssp ECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSS
T ss_pred ECCCCCCHHHHHHHHHHHHH-HcCCeEEEeecccc
Confidence 49999999999999999987 57788988877654
No 249
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.81 E-value=0.00057 Score=51.57 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCCCCcHHHHHHHHhcCc----C---CCceeEEEECCee
Q psy4235 1 MSPSGAGKTTLLAALNKRV----K---GLVQGEILLNGCP 33 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~----~---~~~~G~i~~~g~~ 33 (197)
+|++|+|||||++.+.+-. . .++.+.+.++|..
T Consensus 31 vG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp EEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 5999999999999998631 1 1245677776643
No 250
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.77 E-value=0.00029 Score=59.11 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=46.6
Q ss_pred hCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCCcch-----------HHhhcCeEEEEeC
Q psy4235 119 TEPQILFCDEPTTGLD---SYSANNVVNLLKQLACESRIVICAIHQPTSG-----------VFEKFDTVSLLAH 178 (197)
Q Consensus 119 ~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~~~~~iii~th~~~~~-----------~~~~~d~v~~l~~ 178 (197)
..|.++++||--.-++ +.....+.+++++.++.|..++++||.+.+. +...|+..+++..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 3588999999988884 7778889999999998899999999987532 2345666666643
No 251
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.76 E-value=0.00036 Score=54.47 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=23.3
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCe
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGC 32 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~ 32 (197)
.|++||||||+++.|+..+. . .+.+.....
T Consensus 32 ~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~~~ 61 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYHRLV-K-DYDVIMTRE 61 (229)
T ss_dssp ECCTTSCHHHHHHHHHHHHT-T-TSCEEEECT
T ss_pred EcCCCCCHHHHHHHHHHHHh-c-CCCceeecC
Confidence 49999999999999998876 4 456654433
No 252
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.76 E-value=0.0011 Score=49.39 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCCCCcHHHHHHHHhcCc----CCCcee----EEEECCee
Q psy4235 1 MSPSGAGKTTLLAALNKRV----KGLVQG----EILLNGCP 33 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~----~~~~~G----~i~~~g~~ 33 (197)
+|++|+|||||++.+++.. ..++.+ .+.++|..
T Consensus 26 vG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 6999999999998766532 114545 55566543
No 253
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.76 E-value=0.0066 Score=49.37 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHh---hCCCEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHhC-CCEEEEEecCCcc---------
Q psy4235 110 RLALAVQLL---TEPQILFCDEPTTGLD--------SYS----ANNVVNLLKQLACE-SRIVICAIHQPTS--------- 164 (197)
Q Consensus 110 rv~ia~al~---~~p~llllDEPts~LD--------~~~----~~~i~~~l~~l~~~-~~~iii~th~~~~--------- 164 (197)
-+..++.++ .+++++++|.-++-.. ... ..++...|+.++++ +.+||++.|-...
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 344455555 4589999998875321 111 23455555565544 6677776552110
Q ss_pred ------hHHhhcCeEEEEeC
Q psy4235 165 ------GVFEKFDTVSLLAH 178 (197)
Q Consensus 165 ------~~~~~~d~v~~l~~ 178 (197)
.+.+.+|.++.+..
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEE
T ss_pred CCCCcHHHHhcCcEEEEEEe
Confidence 25567888888864
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.00052 Score=50.67 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|++||||||+.+.|+..+.
T Consensus 9 ~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHHhcC
Confidence 49999999999999986543
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.69 E-value=0.00058 Score=50.50 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 10 IGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHc
Confidence 4999999999999998644
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.68 E-value=0.00058 Score=50.76 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|++||||||+.+.|+.
T Consensus 10 ~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999984
No 257
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.63 E-value=0.00019 Score=58.37 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=28.0
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeCC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS 35 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~~ 35 (197)
+|+||+||||++..|++.+. +..++|.+.+.+..
T Consensus 104 ~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 104 VGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADVY 137 (297)
T ss_dssp ECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCCS
T ss_pred ECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCCC
Confidence 49999999999999999887 56778887766653
No 258
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.62 E-value=0.00033 Score=55.35 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~ 34 (197)
+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 38 ~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~ 68 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF 68 (253)
T ss_dssp ESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred ECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence 49999999999999987653 24566776544
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.61 E-value=0.00068 Score=49.35 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=14.2
Q ss_pred CCCCCCcHHHHHHHH
Q psy4235 1 MSPSGAGKTTLLAAL 15 (197)
Q Consensus 1 iG~nGaGKSTLl~~i 15 (197)
.|++||||||+.+.|
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 499999999999999
No 260
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.60 E-value=0.00065 Score=53.74 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+||||||||||.+.|+..+
T Consensus 7 ~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHhcC
Confidence 5999999999999998654
No 261
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.58 E-value=0.00059 Score=54.30 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcchHHhhcCeEE
Q psy4235 129 PTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVS 174 (197)
Q Consensus 129 Pts~LD~~~~~~i~~~l~~l~~~-~~~iii~th~~~~~~~~~~d~v~ 174 (197)
|+|+.+.....++++.+.+.... ..+..+..|.. ..+.+.++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHH
Confidence 99999999999999999887654 33434555554 45666666653
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.57 E-value=0.00077 Score=49.60 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|++||||||+.+.|+.
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49999999999999985
No 263
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.57 E-value=0.00077 Score=50.63 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHhc
Confidence 4999999999999998744
No 264
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.51 E-value=0.0012 Score=55.28 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCCCCCcHHHHHHHHhcCc----------CCCceeEEEECC
Q psy4235 1 MSPSGAGKTTLLAALNKRV----------KGLVQGEILLNG 31 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~----------~~~~~G~i~~~g 31 (197)
+|.+|+|||||++.|++.. ..|..|.+.+.+
T Consensus 8 VG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 6999999999999999832 114567777765
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.46 E-value=0.0011 Score=49.12 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|++||||||+.+.|+-.
T Consensus 9 ~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 266
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.46 E-value=0.0026 Score=52.34 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH--h--hCCCEEEEeCCCCCCC-----H----------HHHHHHHHHHHHH----HhCCCEEEEEecC
Q psy4235 106 GQRKRLALAVQL--L--TEPQILFCDEPTTGLD-----S----------YSANNVVNLLKQL----ACESRIVICAIHQ 161 (197)
Q Consensus 106 Gq~qrv~ia~al--~--~~p~llllDEPts~LD-----~----------~~~~~i~~~l~~l----~~~~~~iii~th~ 161 (197)
++++.+.++.++ + .+|++++.|--++=.. - ...+.+.+.|+++ ++.+.++|++-|-
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 444545566555 3 4799999998765431 0 1223344445443 3457788887765
No 267
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.41 E-value=0.0049 Score=44.10 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
+..+|++||. ..+++..+..+++.+.+....+..+|++|...
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 4578999996 46788888888888877543345667776654
No 268
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.40 E-value=0.00087 Score=55.95 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHHHHh
Q psy4235 1 MSPSGAGKTTLLAALN 16 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~ 16 (197)
+|||||||||+|.+|.
T Consensus 31 ~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 31 IGENGSGKSSIFEAVF 46 (371)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999999986
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.38 E-value=0.0004 Score=52.77 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
.|++||||||+++.|+..+.
T Consensus 6 ~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHH
Confidence 48999999999999987664
No 270
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0011 Score=49.21 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.+++..
T Consensus 54 vG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.36 E-value=0.0012 Score=49.03 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++||||||+.+.|+..
T Consensus 11 ~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999753
No 272
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.36 E-value=0.0012 Score=48.89 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|++||||||+.+.|+-
T Consensus 17 ~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 17 TGTPGVGKTTLGKELAS 33 (180)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 49999999999999983
No 273
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.31 E-value=0.0016 Score=49.88 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|++||||||+.+.|+.
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999986
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.30 E-value=0.0011 Score=49.42 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|++||||||+.+.|+-.
T Consensus 11 ~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 11 TGHPATGKTTLSQALATG 28 (193)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 275
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.30 E-value=0.0016 Score=51.17 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.||+||||||+.+.|+.
T Consensus 15 ~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999984
No 276
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.0013 Score=51.16 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++||||||+.+.|++.
T Consensus 22 ~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp ECSSCSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999863
No 277
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.28 E-value=0.0014 Score=47.24 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 11 ~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp ECSTTSSHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999874
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.27 E-value=0.0014 Score=52.79 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=20.8
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG 31 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g 31 (197)
.||+||||||+.+.|+..+. .|.+.+++
T Consensus 39 ~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp ECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred ECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 49999999999999975432 24566654
No 279
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.27 E-value=0.0012 Score=49.03 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.|++||||||+.+.|+-.+
T Consensus 7 ~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EECTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998644
No 280
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.27 E-value=0.0015 Score=52.38 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.++|..
T Consensus 9 vG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999853
No 281
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.24 E-value=0.0015 Score=48.75 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++||||||+.+.|+..
T Consensus 16 ~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999854
No 282
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0017 Score=46.89 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 9 ~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999874
No 283
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.22 E-value=0.0016 Score=46.66 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 7 ~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998753
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.22 E-value=0.0016 Score=48.66 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|++|||||||++.|+..+.
T Consensus 10 ~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhhH
Confidence 49999999999999987653
No 285
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.21 E-value=0.0017 Score=47.12 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 10 ~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-
T ss_pred ECCCCccHHHHHHHHhcCC
Confidence 5999999999999998753
No 286
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0017 Score=53.25 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHH--HcCCcccccccCCCCCHHHHHHH-HHHHHH
Q psy4235 76 WLELNKTITRVME--NLGINHRRQVQISGLSGGQRKRL-ALAVQL 117 (197)
Q Consensus 76 ~~~~~~~~~~~l~--~~~l~~~~~~~~~~LSgGq~qrv-~ia~al 117 (197)
..+..+.+..+++ .+++++...+.+..+|+|+.|++ .+...+
T Consensus 171 ~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 171 QEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSC 215 (340)
T ss_dssp HHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444555666663 45566666677888999999885 344333
No 287
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.19 E-value=0.0013 Score=47.46 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.++|..
T Consensus 8 vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EESTTSSHHHHHHHHCCC-
T ss_pred ECCCCCCHHHHHHHHcCcc
Confidence 5999999999999998754
No 288
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.18 E-value=0.0013 Score=46.97 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 9 ~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999865
No 289
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.17 E-value=0.0013 Score=48.69 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.+.+.
T Consensus 22 vG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EESTTSSHHHHHHHHCCS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999875
No 290
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.16 E-value=0.0017 Score=46.57 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 10 ~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 291
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.16 E-value=0.0019 Score=46.72 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+++..
T Consensus 8 vG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC-
T ss_pred ECCCCCCHHHHHHHHHhcc
Confidence 5999999999999998643
No 292
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.15 E-value=0.0018 Score=46.43 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 9 ~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 293
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.15 E-value=0.0018 Score=46.70 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 12 ~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999998754
No 294
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.14 E-value=0.0021 Score=47.95 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.|+.||||||+.+.|+-.+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998654
No 295
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.14 E-value=0.0017 Score=47.27 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 15 ~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp ECCTTSCHHHHHHHHCSC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999874
No 296
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.12 E-value=0.21 Score=43.04 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=42.7
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCC-------H-HHHHHHHHHHHHHHhC-CCEEEEEecCCc--------------
Q psy4235 109 KRLALAVQLL--TEPQILFCDEPTTGLD-------S-YSANNVVNLLKQLACE-SRIVICAIHQPT-------------- 163 (197)
Q Consensus 109 qrv~ia~al~--~~p~llllDEPts~LD-------~-~~~~~i~~~l~~l~~~-~~~iii~th~~~-------------- 163 (197)
+.+..++.++ .+|+++++|=-+ .+. . ....++...|+.++++ +.+||+++|-..
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 3344445444 479999999543 332 1 2234566777777665 788888877431
Q ss_pred -------chHHhhcCeEEEEeC
Q psy4235 164 -------SGVFEKFDTVSLLAH 178 (197)
Q Consensus 164 -------~~~~~~~d~v~~l~~ 178 (197)
..+.+.+|-|+.|..
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEEe
Confidence 124566899988863
No 297
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.12 E-value=0.0019 Score=46.66 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 12 ~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp ECCTTSCHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 298
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.11 E-value=0.0019 Score=46.54 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998653
No 299
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.09 E-value=0.002 Score=47.02 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999998753
No 300
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.08 E-value=0.002 Score=46.34 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 9 ~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp ECSTTSSHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 301
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.08 E-value=0.0021 Score=46.79 Aligned_cols=18 Identities=44% Similarity=0.562 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 14 ~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp ESCTTTTHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999863
No 302
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.07 E-value=0.002 Score=50.62 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.|+|..
T Consensus 27 vG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 27 VGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp ESSTTSSHHHHHHHHHTSC
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999864
No 303
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.07 E-value=0.002 Score=46.88 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 13 ~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 304
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.04 E-value=0.0062 Score=56.23 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 121 PQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 121 p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
+.+|+|||. ..+++.....+++.+.+
T Consensus 661 ~~vl~lDEi-~~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 661 YSVILFDEI-EKAHPDVFNILLQILDD 686 (854)
T ss_dssp SEEEEESSG-GGSCHHHHHHHHHHHTT
T ss_pred CeEEEEecc-cccCHHHHHHHHHHhcc
Confidence 469999999 45788777777777754
No 305
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.03 E-value=0.0022 Score=48.82 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|+.||||||+.+.|+.
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999964
No 306
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.02 E-value=0.0017 Score=48.16 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 29 ~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999875
No 307
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.00 E-value=0.0018 Score=47.90 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHHcCc
Confidence 5999999999999998753
No 308
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.00 E-value=0.0019 Score=48.42 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++||||||+.+.|+..
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 489999999999999853
No 309
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.99 E-value=0.0024 Score=46.66 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|++||||||+.+.|+-.
T Consensus 8 ~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 8 VGARGCGMTTVGRELARA 25 (173)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 310
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.99 E-value=0.0023 Score=46.99 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 10 ~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999998643
No 311
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.99 E-value=0.0024 Score=47.95 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.|+.||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp ECCTTSSHHHHHHHHHHTS
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999998654
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0025 Score=47.33 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|++||||||+.+.|+-
T Consensus 9 ~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVE 25 (196)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999974
No 313
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.98 E-value=0.012 Score=49.08 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=40.6
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---HhC-CCEEEEEecCCcc-----
Q psy4235 109 KRLALAVQLL--TEPQILFCDEPTTGLD---S----------YSANNVVNLLKQL---ACE-SRIVICAIHQPTS----- 164 (197)
Q Consensus 109 qrv~ia~al~--~~p~llllDEPts~LD---~----------~~~~~i~~~l~~l---~~~-~~~iii~th~~~~----- 164 (197)
+-+.+++.++ .+++++++|..++-.. . ...+.+.+.++.+ +++ +.+||++.|-...
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY 218 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence 3445566665 5799999999986541 0 1123455566655 344 6677776664210
Q ss_pred ----------hHHhhcCeEEEEeC
Q psy4235 165 ----------GVFEKFDTVSLLAH 178 (197)
Q Consensus 165 ----------~~~~~~d~v~~l~~ 178 (197)
.+...+|-++.+..
T Consensus 219 g~p~~~~gg~al~~~a~~rl~L~r 242 (366)
T 1xp8_A 219 GNPETTTGGRALKFYASVRLDVRK 242 (366)
T ss_dssp -------CHHHHHHHCSEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEe
Confidence 03456787777764
No 314
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.98 E-value=0.0019 Score=46.56 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EESTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999998753
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.96 E-value=0.0029 Score=47.64 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
.|+.||||||+.+.|+..+.
T Consensus 10 ~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp ECCTTSSHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHh
Confidence 49999999999999987554
No 316
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.95 E-value=0.002 Score=46.95 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 15 ~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EECTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999875
No 317
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.95 E-value=0.083 Score=45.18 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|++|+||||++..|+..+.
T Consensus 106 vG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 106 VGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHHH
Confidence 49999999999999987654
No 318
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.94 E-value=0.0025 Score=45.84 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 12 ~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 319
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.94 E-value=0.0025 Score=46.03 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 13 ~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999763
No 320
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.93 E-value=0.0029 Score=47.66 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.|++||||||+.+.|+..+
T Consensus 8 ~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 8 DGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999998743
No 321
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.93 E-value=0.0014 Score=52.58 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=20.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4235 122 QILFCDEPTTGLDSYSANNVVNLLKQL 148 (197)
Q Consensus 122 ~llllDEPts~LD~~~~~~i~~~l~~l 148 (197)
.++++||. ..+++..+..+++.+.+-
T Consensus 121 ~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 121 SVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp EEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred eEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 69999997 567888888888888764
No 322
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.92 E-value=0.002 Score=47.44 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 7 ~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHhCcC
Confidence 5999999999999998753
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.92 E-value=0.0026 Score=48.44 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|+.||||||+.+.|+.
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999974
No 324
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.92 E-value=0.0026 Score=47.12 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 13 ~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999998753
No 325
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.92 E-value=0.0029 Score=46.08 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 12 ~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGG
T ss_pred ECcCCCCHHHHHHHHHhCc
Confidence 5999999999999998643
No 326
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.91 E-value=0.003 Score=46.70 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|+.|+|||||++.+.|...
T Consensus 20 vG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp ECSTTSSHHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHHhhcc
Confidence 59999999999999998654
No 327
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0014 Score=48.13 Aligned_cols=17 Identities=47% Similarity=0.624 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|++|+|||||++.+.+
T Consensus 24 ~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEETTSSHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 59999999999999874
No 328
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.88 E-value=0.002 Score=53.62 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++||||||+.++|++.+
T Consensus 30 ~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 30 VGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 5999999999999999754
No 329
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.87 E-value=0.0027 Score=46.93 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+++.
T Consensus 27 vG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999865
No 330
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.87 E-value=0.0027 Score=47.16 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 31 ~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999999874
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.87 E-value=0.0027 Score=46.69 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 17 ~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 332
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.86 E-value=0.0028 Score=45.49 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 6 ~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999763
No 333
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.86 E-value=0.0022 Score=51.06 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.|.+.-
T Consensus 14 vG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 14 VGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EECTTSSHHHHHHHHSSSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999997643
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.85 E-value=0.0025 Score=47.56 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|+.||||||+.+.|+-.
T Consensus 15 ~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 335
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.85 E-value=0.0029 Score=45.99 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 21 ~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998753
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.85 E-value=0.0028 Score=48.07 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+++..
T Consensus 18 ~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.83 E-value=0.0025 Score=48.94 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++||||||+.+.|+-.
T Consensus 11 ~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 11 SGAPASGKGTQCELIKTK 28 (222)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999754
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.83 E-value=0.0029 Score=46.27 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 24 ~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhhC
Confidence 599999999999999864
No 339
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.82 E-value=0.018 Score=56.69 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=42.0
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hCCCEEEEEecCCc-------
Q psy4235 110 RLALAVQLL--TEPQILFCDEPTTGLD-S------------YSANNVVNLLKQL---A-CESRIVICAIHQPT------- 163 (197)
Q Consensus 110 rv~ia~al~--~~p~llllDEPts~LD-~------------~~~~~i~~~l~~l---~-~~~~~iii~th~~~------- 163 (197)
-...++.++ .+|+++++|+..+-.. . ...+++.+.++++ + +.+.+||++.|-..
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G 877 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 877 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC
Confidence 334444333 5899999999887552 1 1233455556554 3 44888888877311
Q ss_pred --------chHHhhcCeEEEEeC
Q psy4235 164 --------SGVFEKFDTVSLLAH 178 (197)
Q Consensus 164 --------~~~~~~~d~v~~l~~ 178 (197)
..+.+.+|-++.+..
T Consensus 878 dp~~p~gs~~Leq~ADvvl~L~R 900 (1706)
T 3cmw_A 878 NPETTTGGNALKFYASVRLDIRR 900 (1706)
T ss_dssp CCEEESSCSHHHHHEEEEEEEEE
T ss_pred CccccCCcchhhheeeEEEEEEe
Confidence 135667788888854
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.003 Score=46.07 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 16 ~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999998643
No 341
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.80 E-value=0.0026 Score=50.36 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|||||||++.++|.
T Consensus 7 vG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHCC
Confidence 599999999999999986
No 342
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.78 E-value=0.0032 Score=51.09 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.+.|.
T Consensus 13 vG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999985
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.77 E-value=0.0039 Score=46.26 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.|+.||||||+.+.|+-.+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998543
No 344
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.77 E-value=0.003 Score=52.85 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.|++.
T Consensus 7 VG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp ECCSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999975
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.76 E-value=0.004 Score=45.29 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|+.||||||+.+.|+-.
T Consensus 6 ~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp ESCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 346
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.76 E-value=0.0033 Score=45.88 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 18 ~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp ECCTTSCHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999875
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.74 E-value=0.0029 Score=48.75 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.||||||+.+.|+-.
T Consensus 13 ~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999843
No 348
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.73 E-value=0.0035 Score=46.16 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 24 ~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998643
No 349
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.73 E-value=0.0028 Score=46.08 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 20 ~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 350
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.72 E-value=0.0027 Score=47.70 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.++|.
T Consensus 29 vG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp ECSTTSSHHHHHHHTCCE
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 699999999999999764
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.71 E-value=0.0059 Score=50.67 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q psy4235 101 SGLSGGQRKRLALAVQL---LT--EPQILFCDEPT 130 (197)
Q Consensus 101 ~~LSgGq~qrv~ia~al---~~--~p~llllDEPt 130 (197)
..+|+|++||..++++| .. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 76 89999999996
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.71 E-value=0.0037 Score=46.29 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.||||||+.+.|+-.
T Consensus 8 ~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.70 E-value=0.0031 Score=47.13 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|+.||||||+.+.|+-.
T Consensus 18 ~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 354
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.69 E-value=0.0038 Score=48.14 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|++||||||+.+.|+-.
T Consensus 6 ~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999743
No 355
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.69 E-value=0.0036 Score=46.39 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 22 ~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999998743
No 356
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.69 E-value=0.023 Score=51.65 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=20.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4235 121 PQILFCDEPTTGLDSYSANNVVNLLKQ 147 (197)
Q Consensus 121 p~llllDEPts~LD~~~~~~i~~~l~~ 147 (197)
+.+|+|||. ..+++..+..+++.+.+
T Consensus 580 ~~vl~lDEi-~~~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 580 YSVVLLDAI-EKAHPDVFNILLQVLED 605 (758)
T ss_dssp SSEEEEECG-GGSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCc-cccCHHHHHHHHHHhcc
Confidence 459999998 45688888888888876
No 357
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.69 E-value=0.0036 Score=46.78 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 20 ~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 358
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.67 E-value=0.0037 Score=46.77 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999998753
No 359
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.67 E-value=0.0039 Score=49.34 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.++|..
T Consensus 11 vG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999853
No 360
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.66 E-value=0.0039 Score=46.92 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=15.3
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|+.||||||+.+.|+-
T Consensus 21 ~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999974
No 361
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.65 E-value=0.003 Score=46.36 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 16 ~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.65 E-value=0.0029 Score=46.70 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=12.4
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp ECCC----CHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999997543
No 363
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.65 E-value=0.0038 Score=46.22 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 28 vG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998753
No 364
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.65 E-value=0.0038 Score=45.76 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 24 ~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.64 E-value=0.0038 Score=47.17 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|+.||||||+.+.|+-.
T Consensus 16 ~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 489999999999999753
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.62 E-value=0.0042 Score=47.53 Aligned_cols=18 Identities=44% Similarity=0.721 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.||||||+.+.|+-.
T Consensus 10 ~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999754
No 367
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.61 E-value=0.0043 Score=46.72 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.||||||+.+.|+-.
T Consensus 26 ~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 368
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.60 E-value=0.0041 Score=45.52 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 11 ~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999853
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.59 E-value=0.0035 Score=46.42 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|+.||||||+.+.|+.
T Consensus 12 ~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999974
No 370
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.59 E-value=0.004 Score=46.40 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 32 vG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp ECSTTSSHHHHHHHHCC-
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 371
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.57 E-value=0.0034 Score=46.34 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.+.+.
T Consensus 13 ~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999875
No 372
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.57 E-value=0.0036 Score=49.10 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|||||||++.|+|..
T Consensus 28 vG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EECTTSCHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998753
No 373
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.57 E-value=0.0045 Score=46.27 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998753
No 374
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.56 E-value=0.0043 Score=45.89 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 26 ~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 375
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.56 E-value=0.0037 Score=49.87 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|..|||||||++.++|..
T Consensus 9 vG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EECTTSSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999853
No 376
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.56 E-value=0.0035 Score=46.52 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 14 vG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EECTTSSHHHHHHHHHHS
T ss_pred ECCCCCcHHHHHHHHHcC
Confidence 599999999999999873
No 377
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.54 E-value=0.0046 Score=48.88 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|++||||||+.+.|+..
T Consensus 10 ~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999999854
No 378
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.54 E-value=0.0044 Score=46.39 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|++|+|||||++.++|
T Consensus 12 vG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAG 28 (192)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 69999999999999986
No 379
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.52 E-value=0.0044 Score=46.00 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 27 ~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999998643
No 380
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.51 E-value=0.0046 Score=47.47 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+++.
T Consensus 35 vG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp ECSTTSSHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999874
No 381
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.51 E-value=0.0057 Score=44.67 Aligned_cols=19 Identities=32% Similarity=0.711 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||.|+|||||++.++..+
T Consensus 49 ~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998654
No 382
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.50 E-value=0.0047 Score=49.46 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 139 NNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 139 ~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
.-+.++|+.++++|..+.++|...
T Consensus 191 ~g~~e~L~~L~~~g~~~~v~T~k~ 214 (301)
T 1ltq_A 191 PMVVELSKMYALMGYQIVVVSGRE 214 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSC
T ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Confidence 447788888888888888888765
No 383
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0039 Score=46.41 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 29 vG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EECTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999998643
No 384
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.49 E-value=0.03 Score=55.97 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---Hh-CCCEEEEEecCCcc------
Q psy4235 110 RLALAVQLL--TEPQILFCDEPTTGLD-S------------YSANNVVNLLKQL---AC-ESRIVICAIHQPTS------ 164 (197)
Q Consensus 110 rv~ia~al~--~~p~llllDEPts~LD-~------------~~~~~i~~~l~~l---~~-~~~~iii~th~~~~------ 164 (197)
-+.+++.++ .+|+++++|.-.+-.. . ...+.+.+.++.+ ++ .+.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 445556554 5799999999876542 1 1223455666666 34 47788887764211
Q ss_pred ---------hHHhhcCeEEEEeC
Q psy4235 165 ---------GVFEKFDTVSLLAH 178 (197)
Q Consensus 165 ---------~~~~~~d~v~~l~~ 178 (197)
.+...+|-++.+..
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R 551 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRR 551 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEe
Confidence 25567888888765
No 385
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.48 E-value=0.0047 Score=45.90 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 29 vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999999875
No 386
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.47 E-value=0.0048 Score=45.02 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 14 ~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 387
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.47 E-value=0.0048 Score=45.78 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+++.
T Consensus 23 ~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 23 CGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp ECCTTSCHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999874
No 388
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.45 E-value=0.0039 Score=46.73 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 30 vG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCcCHHHHHHHHHhCC
Confidence 5999999999999998753
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.45 E-value=0.0042 Score=47.38 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|+.||||||+.+.|+-
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999974
No 390
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.44 E-value=0.005 Score=45.87 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 34 ~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 391
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.44 E-value=0.0051 Score=49.93 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.|.|.
T Consensus 16 vG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 599999999999999985
No 392
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.44 E-value=0.0049 Score=46.57 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|+.||||||+.+.|+-.
T Consensus 15 ~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999999853
No 393
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.44 E-value=0.005 Score=45.63 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 28 ~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 394
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.42 E-value=0.005 Score=48.98 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|.+|+|||||+|.|.|...
T Consensus 105 vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHhcccc
Confidence 59999999999999998654
No 395
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.41 E-value=0.0054 Score=47.99 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.||.||||||+.+.|+-
T Consensus 35 ~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999974
No 396
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.0052 Score=45.38 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 21 ~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999875
No 397
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.41 E-value=0.0034 Score=46.51 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 27 ~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EECTTSSHHHHHHHTSCGG
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 398
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.40 E-value=0.0021 Score=48.84 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.|+|..
T Consensus 35 ~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EESCHHHHHHHHHHHTTCS
T ss_pred EcCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 399
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.39 E-value=0.0046 Score=46.41 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 31 ~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EESTTSSHHHHHHHHHC-
T ss_pred ECcCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 400
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.38 E-value=0.0045 Score=49.88 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|||||||++.|+|..
T Consensus 30 vG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 30 VGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EECSSSSHHHHHHHHHTSC
T ss_pred EcCCCCCHHHHHHHHHCCC
Confidence 5999999999999999864
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0043 Score=46.05 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHhcCC
Confidence 5999999999999998754
No 402
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0047 Score=45.63 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 22 ~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999853
No 403
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.38 E-value=0.0057 Score=48.08 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||+|+|||||.++|+...
T Consensus 50 ~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp BCSSCSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 4999999999999998643
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.38 E-value=0.0043 Score=45.36 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|+.|+|||||++.+.+
T Consensus 12 ~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHc
Confidence 59999999999999984
No 405
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.37 E-value=0.0058 Score=46.23 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 31 vG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999998753
No 406
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.36 E-value=0.0053 Score=45.91 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+..
T Consensus 34 ~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999998753
No 407
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.35 E-value=0.0055 Score=46.04 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 26 ~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp ECSTTSSHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.34 E-value=0.0046 Score=47.03 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+++..
T Consensus 36 ~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EECTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 5899999999999998653
No 409
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.0045 Score=46.79 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.+.+.
T Consensus 32 vG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHhC
Confidence 599999999999998764
No 410
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.33 E-value=0.0061 Score=45.46 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 26 ~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ECSTTSSHHHHHHHHHC-
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 411
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.32 E-value=0.0046 Score=46.39 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 14 ~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EESTTSSHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.30 E-value=0.0043 Score=45.65 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 27 ~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEETTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 589999999999999864
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.28 E-value=0.0065 Score=44.30 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|+.||||||+.+.|+-.
T Consensus 13 ~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999753
No 414
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.27 E-value=0.0052 Score=48.72 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.|.|..
T Consensus 45 vG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 45 MGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999754
No 415
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.27 E-value=0.0043 Score=45.26 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+++-
T Consensus 13 vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp ECCGGGCHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999864
No 416
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.27 E-value=0.0053 Score=45.84 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|++|+|||||++.+.+...
T Consensus 26 vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EESTTSSHHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 59999999999999988543
No 417
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.26 E-value=0.0063 Score=45.13 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 27 vG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp ECCTTSSHHHHHHHHHHS
T ss_pred ECCCCCcHHHHHHHHHhC
Confidence 599999999999998764
No 418
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.25 E-value=0.0075 Score=45.65 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=29.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 119 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|+++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~ 166 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDP 166 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCCh
Confidence 4678999999765 7887777777766543 2345677777654
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.23 E-value=0.0063 Score=45.94 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+++..
T Consensus 13 vG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998643
No 420
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.0053 Score=46.26 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.+-.
T Consensus 31 vG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EECTTSSHHHHHHHHHHSS
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999998743
No 421
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.19 E-value=0.021 Score=43.56 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcchHHhhcCeEEEEeC
Q psy4235 108 RKRLALAVQLL--TEPQILFCDEPTT--GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178 (197)
Q Consensus 108 ~qrv~ia~al~--~~p~llllDEPts--~LD~~~~~~i~~~l~~l~~~~~~iii~th~~~~~~~~~~d~v~~l~~ 178 (197)
+..+..++..+ .+.+++||||... .++.....+++++|.+. -+...+|++.......+.+.||-|--|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 45555666666 5689999999976 34555566788888653 34679999999999999999999988865
No 422
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.18 E-value=0.006 Score=46.34 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 40 vG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EECTTSSHHHHHHHHHC-
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.18 E-value=0.0054 Score=46.46 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+++.
T Consensus 34 vG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999875
No 424
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.16 E-value=0.006 Score=48.16 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.+.|..
T Consensus 42 vG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EECTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999854
No 425
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.12 E-value=0.0056 Score=48.80 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|..|+|||||++.|+|..
T Consensus 32 vG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 32 VGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEBTTSCHHHHHHHHHTSC
T ss_pred EeCCCCCHHHHHHHHHCCC
Confidence 5899999999999999864
No 426
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.11 E-value=0.0086 Score=46.91 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.|++||||||+.+.|+..
T Consensus 28 ~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999763
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.10 E-value=0.0078 Score=45.61 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|+.||||||+.+.|+-
T Consensus 18 tG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKN 34 (192)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999974
No 428
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.08 E-value=0.0044 Score=45.39 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=5.5
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 14 ~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp ECCCCC------------
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999764
No 429
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.08 E-value=0.0039 Score=50.35 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCCCCcHHHHHHHHhcC
Q psy4235 2 SPSGAGKTTLLAALNKR 18 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~ 18 (197)
|++||||||+.+.|+..
T Consensus 12 G~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 12 GSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCC---CCTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999753
No 430
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.05 E-value=0.0066 Score=44.32 Aligned_cols=19 Identities=26% Similarity=0.615 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||.|+|||||++.++...
T Consensus 49 ~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp ESCGGGCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998654
No 431
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.03 E-value=0.0042 Score=46.37 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=0.7
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 26 ~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSK 43 (208)
T ss_dssp C-----------------
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999999865
No 432
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.03 E-value=0.0062 Score=45.44 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 35 ~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EESTTSSHHHHHHHHCSS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999753
No 433
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.99 E-value=0.0066 Score=45.51 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 31 vG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999874
No 434
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.96 E-value=0.0074 Score=46.16 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.||||||+.+.|+-.
T Consensus 11 ~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999999753
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.95 E-value=0.0091 Score=46.18 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.||||||+.+.|+-.
T Consensus 22 ~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999854
No 436
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.0095 Score=45.64 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.+.|.
T Consensus 43 vG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp ECCTTSSHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999999864
No 437
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.0074 Score=44.74 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 24 ~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EECTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 438
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.84 E-value=0.059 Score=53.18 Aligned_cols=67 Identities=7% Similarity=0.025 Sum_probs=41.7
Q ss_pred HHHHHHh--hCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEecCCc---------
Q psy4235 112 ALAVQLL--TEPQILFCDEPTTGLDS-------------YSANNVVNLLKQL----ACESRIVICAIHQPT--------- 163 (197)
Q Consensus 112 ~ia~al~--~~p~llllDEPts~LD~-------------~~~~~i~~~l~~l----~~~~~~iii~th~~~--------- 163 (197)
.+++.++ .+|+++++|..++=... ...+.+.+.++.+ ++.+.++|++.|-..
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4445444 57999999998876541 1223345555555 344888888877421
Q ss_pred ------chHHhhcCeEEEEeC
Q psy4235 164 ------SGVFEKFDTVSLLAH 178 (197)
Q Consensus 164 ------~~~~~~~d~v~~l~~ 178 (197)
..+...+|-++.+..
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEe
Confidence 135577888877765
No 439
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.83 E-value=0.0039 Score=47.27 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+++.
T Consensus 17 vG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp ECCTTSSHHHHHCBCTTC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 440
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.81 E-value=0.0084 Score=51.31 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|++|+|||||++.|+|.
T Consensus 29 vG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 29 VGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp ECSSSSSHHHHHHHHEEE
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 599999999999999874
No 441
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.81 E-value=0.0097 Score=47.66 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.9
Q ss_pred CCCCCCcHHHHHHHHh
Q psy4235 1 MSPSGAGKTTLLAALN 16 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~ 16 (197)
.|++||||||+.+.|+
T Consensus 81 ~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLK 96 (281)
T ss_dssp EECTTSCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999999997
No 442
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.78 E-value=0.012 Score=45.25 Aligned_cols=19 Identities=42% Similarity=0.657 Sum_probs=16.6
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|++||||||+.+.|+-.+.
T Consensus 13 G~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 13 GPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999976553
No 443
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.01 Score=45.29 Aligned_cols=18 Identities=39% Similarity=0.693 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 19 ~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp ESCTTSSHHHHHHHHHHC
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999999874
No 444
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.73 E-value=0.01 Score=45.07 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 33 vG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ECSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.72 E-value=0.011 Score=48.56 Aligned_cols=19 Identities=47% Similarity=0.683 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+||+|||||||.+.|+..+
T Consensus 11 ~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 5999999999999998643
No 446
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.71 E-value=0.01 Score=50.27 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|++||||||+.+.|+.
T Consensus 264 ~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp ESCTTSSHHHHHHHHTG
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999974
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.67 E-value=0.0092 Score=44.80 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 35 vG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EECTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhhC
Confidence 599999999999999864
No 448
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.63 E-value=0.0061 Score=45.00 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|+.|+|||||++.+.+
T Consensus 28 ~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEETTSSHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHHc
Confidence 58999999999999965
No 449
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.62 E-value=0.014 Score=43.56 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=27.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
++.++++||. ..+++.....+.+.+.... .+..+|+++...
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6889999995 5567777777777776642 244556666543
No 450
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.60 E-value=0.0095 Score=45.38 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|+.|+|||||++.++...
T Consensus 44 vG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 5899999999999998653
No 451
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.60 E-value=0.013 Score=44.97 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+||.||||+|..+.|+-.
T Consensus 6 ~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999843
No 452
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.57 E-value=0.0098 Score=44.76 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|+.|+|||||++.+.+
T Consensus 36 vG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHh
Confidence 59999999999999875
No 453
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.55 E-value=0.015 Score=44.38 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=16.8
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|+-||||||+++.|+-.+.
T Consensus 9 G~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHH
Confidence 8999999999999987654
No 454
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.54 E-value=0.013 Score=48.53 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||+|||||||.+.|+..+
T Consensus 13 ~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 13 VGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCcCcHHHHHHHHHHHc
Confidence 4999999999999998654
No 455
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.53 E-value=0.011 Score=46.03 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=13.6
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|++||||||+.+.|+..+.
T Consensus 32 G~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 32 GIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCC---CHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999986543
No 456
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.49 E-value=0.016 Score=41.35 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q psy4235 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162 (197)
Q Consensus 120 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~~~iii~th~~ 162 (197)
+..+|++||. ..|++..+..+++.+... .....+|.+|..+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcC
Confidence 4468999998 468888888888888432 2245677777654
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.48 E-value=0.013 Score=45.45 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|+.||||||+.+.|+-.+.
T Consensus 9 G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 9 GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp ECTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHcC
Confidence 8999999999999986553
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.45 E-value=0.014 Score=44.27 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++||||||+.+.|+..+
T Consensus 9 ~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 9 DGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999998643
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.38 E-value=0.011 Score=44.38 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+-
T Consensus 15 ~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 460
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.36 E-value=0.016 Score=44.84 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+||.||||+|..+.|+-.
T Consensus 35 lGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp ECCTTCCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999843
No 461
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.34 E-value=0.018 Score=43.66 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.5
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|+-||||||.++.|+-.+.
T Consensus 7 G~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 8999999999999986554
No 462
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.34 E-value=0.014 Score=45.65 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCCCCcHHHHHHHHhcCc
Q psy4235 2 SPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~ 19 (197)
|++||||||+++.|+..+
T Consensus 34 G~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 34 GLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp ESTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 899999999999998654
No 463
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.36 E-value=0.0076 Score=45.18 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
+|+.|+|||||++.+.+
T Consensus 36 ~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 36 VGDGAVGKTCLLISYTT 52 (204)
Confidence 69999999999998875
No 464
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.28 E-value=0.015 Score=44.70 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.6
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|++||||||+.+.|...+.
T Consensus 10 G~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 10 GLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp ECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 8999999999999986553
No 465
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.25 E-value=0.019 Score=45.31 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.||.|+|||||.+.++..
T Consensus 70 ~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999999864
No 466
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.20 E-value=0.016 Score=53.15 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCCCCCcHHHHHHHHhcCcCCCceeEEEECCeeC
Q psy4235 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI 34 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~~~~~G~i~~~g~~~ 34 (197)
.||+|+|||||.++|++... .+-+.+++.++
T Consensus 517 ~GppGtGKT~Lakala~~~~---~~~i~v~~~~l 547 (806)
T 1ypw_A 517 YGPPGCGKTLLAKAIANECQ---ANFISIKGPEL 547 (806)
T ss_dssp BCCTTSSHHHHHHHHHHHHT---CCCCCCCCSSS
T ss_pred ECCCCCCHHHHHHHHHHHhC---CCEEEEechHh
Confidence 49999999999999998764 23455555554
No 467
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.19 E-value=0.014 Score=46.85 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|.+|+|||||+|.|.|...
T Consensus 126 vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EESTTSSHHHHHHHHHTSCC
T ss_pred EecCCCchHHHHHHHhcCce
Confidence 58999999999999998653
No 468
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.15 E-value=0.016 Score=48.92 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+||+|+|||||++.|+...
T Consensus 180 vG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 180 VAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp ECCSSSSHHHHHHHHHHHH
T ss_pred ecCCCCChhHHHHHHHHHH
Confidence 5999999999999998764
No 469
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.12 E-value=0.094 Score=44.78 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.9
Q ss_pred CCCCCcHHHHHHHHhc
Q psy4235 2 SPSGAGKTTLLAALNK 17 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g 17 (197)
|++|+|||||+--++.
T Consensus 204 G~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 204 ARPSMGKTAFALKQAK 219 (444)
T ss_dssp ECSSSSHHHHHHHHHH
T ss_pred eCCCCChHHHHHHHHH
Confidence 8999999999877764
No 470
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.10 E-value=0.021 Score=44.30 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|++||||||+.+.|+..+.
T Consensus 28 G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 28 GIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 8999999999999986543
No 471
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.08 E-value=0.019 Score=47.08 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
.||+|||||||.+.|+-.
T Consensus 9 ~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 9 VGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp ECCTTSCHHHHHHHHHHT
T ss_pred ECCCcCCHHHHHHHHHHh
Confidence 499999999999999854
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.04 E-value=0.012 Score=46.36 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=16.1
Q ss_pred CCCCCcHHHHHHHHhcCc
Q psy4235 2 SPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~ 19 (197)
|+.||||||+.+.|+-.+
T Consensus 31 G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 31 GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CSTTSSHHHHHTTTGGGC
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 899999999999998654
No 473
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.00 E-value=0.019 Score=46.21 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=16.2
Q ss_pred CCCCCcHHHHHHHHhcCc
Q psy4235 2 SPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~ 19 (197)
||.|+|||+|.++|+..+
T Consensus 43 GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 43 GGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp ECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998643
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.98 E-value=0.02 Score=46.79 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+||+|||||||...|+-.
T Consensus 16 ~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 16 MGPTASGKTALAIELRKI 33 (316)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHh
Confidence 499999999999999854
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.98 E-value=0.019 Score=44.03 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+||+|+|||||...|+..
T Consensus 40 ~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQR 57 (205)
T ss_dssp ECCCTTTTHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999998743
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.95 E-value=0.024 Score=45.13 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
.||.|+|||||.+.++..+.
T Consensus 56 ~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp ECCTTSSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 49999999999999986553
No 477
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.94 E-value=0.017 Score=48.71 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy4235 82 TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFC 126 (197)
Q Consensus 82 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ia~al~~~p~llll 126 (197)
.+.++++.++.... ..++|..+...+.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45566666665432 347899998888777667778988887
No 478
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.93 E-value=0.02 Score=44.27 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=17.3
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
|+.||||||+.+.|.-.+.
T Consensus 12 G~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 12 GLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp ECSSSSHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 8999999999999987665
No 479
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.90 E-value=0.029 Score=47.97 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
.||+|+|||||.++|+....
T Consensus 56 ~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp ECSTTSSHHHHHHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHHHHhC
Confidence 39999999999999997654
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.90 E-value=0.024 Score=46.29 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHhc
Q psy4235 1 MSPSGAGKTTLLAALNK 17 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g 17 (197)
.|+||+|||||...+.+
T Consensus 150 ~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 150 TGDSGIGKSETALELIK 166 (314)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHh
Confidence 48999999999999986
No 481
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.89 E-value=0.02 Score=47.75 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|.+|+|||||+|.|.|.
T Consensus 168 vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 168 VGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCchHHHHHHHHhh
Confidence 599999999999999986
No 482
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.89 E-value=0.02 Score=42.87 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.0
Q ss_pred CCCCCCcHHHHHHHHh
Q psy4235 1 MSPSGAGKTTLLAALN 16 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~ 16 (197)
.|+||+|||||...+.
T Consensus 22 ~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 22 TGEANIGKSELSLALI 37 (181)
T ss_dssp EESSSSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 4899999999998775
No 483
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.84 E-value=0.024 Score=46.25 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||.|+|||||.+.++...
T Consensus 51 ~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp ESSSSSCHHHHHHHHHHHT
T ss_pred ECCCCccHHHHHHHHHHHc
Confidence 3999999999999999754
No 484
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.83 E-value=0.023 Score=46.01 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 9 vG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp ECCTTSSHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999998765
No 485
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.75 E-value=0.025 Score=45.87 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||.|+|||||.++++...
T Consensus 57 ~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 57 YGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp ECSSSSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 3999999999999998643
No 486
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.70 E-value=0.02 Score=48.61 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|++|+|||||++.|+|..
T Consensus 9 vG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 9 VGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp ECSTTSSHHHHHHHHEEEE
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999853
No 487
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.64 E-value=0.028 Score=45.58 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=28.9
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCcchHHh
Q psy4235 118 LTEPQILFCDEPT-TGLDSYSANNVVN-LLKQLACESRIVICAIHQPTSGVFE 168 (197)
Q Consensus 118 ~~~p~llllDEPt-s~LD~~~~~~i~~-~l~~l~~~~~~iii~th~~~~~~~~ 168 (197)
+.++++|++||.- ..++...+..++. ++.....++..+|++|+.....+..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 3445444544544 6655434456788888865544443
No 488
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.63 E-value=0.024 Score=45.30 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||.|+|||||.+.++..+
T Consensus 73 ~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 73 TGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999988654
No 489
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.026 Score=48.14 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.1
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
||.|+|||+|.++|++...
T Consensus 222 GPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 222 GPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp SCTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHhC
Confidence 9999999999999997543
No 490
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.027 Score=48.05 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
.||.|+|||+|.++|++...
T Consensus 212 ~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 212 YGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp ESCTTTTHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 39999999999999997543
No 491
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.57 E-value=0.015 Score=47.92 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
+|..|+|||||++.|+|..
T Consensus 37 vG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 37 VGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp ECBTTSSHHHHHHTTTTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 492
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.53 E-value=0.014 Score=44.31 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHh
Q psy4235 110 RLALAVQLLTEPQILFCDEPTT-----GLDSYSANNVVNLLKQLAC 150 (197)
Q Consensus 110 rv~ia~al~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~ 150 (197)
.-.|++.+..+|.+.+.++|+. .+|+...+++...+++.+.
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQT 211 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhc
Confidence 3467788888998888887765 7888888888888777543
No 493
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.50 E-value=0.031 Score=46.09 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||+|+||||+.++|+...
T Consensus 57 ~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 57 IGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998654
No 494
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.45 E-value=0.031 Score=45.29 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHhcCc
Q psy4235 1 MSPSGAGKTTLLAALNKRV 19 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~ 19 (197)
.||+|+|||||.+.|+...
T Consensus 61 ~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 61 SGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECcCCCCHHHHHHHHHHHh
Confidence 4999999999999998654
No 495
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.029 Score=47.90 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
.||.|+|||+|.++|++...
T Consensus 221 ~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 221 YGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp ESCTTSSHHHHHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHHHHhC
Confidence 39999999999999997543
No 496
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.43 E-value=0.022 Score=49.04 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.++|.
T Consensus 230 vG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 230 VGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHhCC
Confidence 599999999999999874
No 497
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=93.40 E-value=0.046 Score=45.87 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHhcCcC
Q psy4235 1 MSPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~~~ 20 (197)
+|+.|+|||||++.|+|...
T Consensus 14 vG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 14 VGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp ECSTTSSHHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHhCccc
Confidence 59999999999999998543
No 498
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.03 Score=47.35 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.1
Q ss_pred CCCCCcHHHHHHHHhcCcC
Q psy4235 2 SPSGAGKTTLLAALNKRVK 20 (197)
Q Consensus 2 G~nGaGKSTLl~~i~g~~~ 20 (197)
||.|+|||+|.+++++...
T Consensus 189 GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 189 GPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp SCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhhC
Confidence 9999999999999997543
No 499
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.38 E-value=0.029 Score=46.35 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+||.|||||||...|+-.
T Consensus 46 ~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp ECSTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999854
No 500
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.36 E-value=0.0045 Score=46.30 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHhcC
Q psy4235 1 MSPSGAGKTTLLAALNKR 18 (197)
Q Consensus 1 iG~nGaGKSTLl~~i~g~ 18 (197)
+|+.|+|||||++.+.+.
T Consensus 39 vG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp ECCTTSCCTTTTTSSBCC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
Done!