RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4235
(197 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 214 bits (547), Expect = 1e-66
Identities = 97/205 (47%), Positives = 126/205 (61%), Gaps = 9/205 (4%)
Query: 1 MSPSGAGKTTLLAAL-NKRVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
M SGAGKTTL+ AL + KG+ G +LLNG PI M IS YV Q D I LTV
Sbjct: 57 MGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI------SGLSGGQRKRLA 112
EHL F A L M RR T E + + V++ LG+ +I GLSGG+RKRLA
Sbjct: 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLA 176
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
A +LLT+P +LFCDEPT+GLDS+ A +VV +LK LA + + +IC IHQP+S +FE FD
Sbjct: 177 FASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDK 236
Query: 173 VSLLAHGGLLAYHGQVSKVLKHFAK 197
+ L+A G +AY G + + F+
Sbjct: 237 IILMA-EGRVAYLGSPDQAVPFFSD 260
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 186 bits (474), Expect = 7e-60
Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 4/189 (2%)
Query: 1 MSPSGAGKTTLLAALNKRV--KGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
+ SG+GKTTLL A++ RV G G+IL NG P + YV Q D L+ LTV
Sbjct: 39 LGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98
Query: 59 LEHLQFMAKLTMDRRTTWLELNK-TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
E L + A L + R+++ K ++ +L + + G+SGG+R+R+++AVQL
Sbjct: 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
L +P++L DEPT+GLDS++A N+V+ L QLA +RIVI IHQP S +F FD + LL
Sbjct: 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL- 217
Query: 178 HGGLLAYHG 186
G + Y G
Sbjct: 218 SSGEIVYSG 226
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 181 bits (462), Expect = 2e-58
Identities = 83/187 (44%), Positives = 110/187 (58%), Gaps = 34/187 (18%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
M PSGAGK+TLL AL R GL V GE+L+NG P+ + +I GYV Q D L LTV
Sbjct: 41 MGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
E L F AKL GLSGG+RKR+++A++L++
Sbjct: 101 ETLMFAAKL--------------------------------RGLSGGERKRVSIALELVS 128
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
P +LF DEPT+GLDS SA V++LL++LA R +IC+IHQP+S +FE FD + LL+ G
Sbjct: 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188
Query: 180 GLLAYHG 186
+ Y G
Sbjct: 189 R-VIYFG 194
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 158 bits (403), Expect = 1e-49
Identities = 80/187 (42%), Positives = 101/187 (54%), Gaps = 34/187 (18%)
Query: 1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
M SGAGKTTLL L R G++ GEIL+NG P+ + R +GYV QQD LTV
Sbjct: 39 MGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN-FQRSTGYVEQQDVHSPNLTVR 97
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
E L+F A L GLS QRKRL + V+L
Sbjct: 98 EALRFSALL--------------------------------RGLSVEQRKRLTIGVELAA 125
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
+P ILF DEPT+GLDS +A N+V LK+LA + ++C IHQP++ +FEKFD + LL G
Sbjct: 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
Query: 180 GLLAYHG 186
G Y G
Sbjct: 186 GKTVYFG 192
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 154 bits (392), Expect = 9e-47
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 7/197 (3%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS--RISGYVAQQDFLIEELTVLE 60
P+GAGKTTLL L +K GEIL+ G + + R GYV Q+ L ELTV E
Sbjct: 39 PNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
+L+F A+L + E + I ++E G+ + ++ LSGG ++RL++A+ LL +
Sbjct: 98 NLEFFARL---YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
P++L DEPT+GLD S + LL++LA E + I E D V +L G
Sbjct: 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGK 214
Query: 181 LLAYHGQVSKVLKHFAK 197
++A G ++ + F
Sbjct: 215 IIAE-GTPEELKEKFGG 230
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 152 bits (386), Expect = 8e-43
Identities = 75/197 (38%), Positives = 114/197 (57%), Gaps = 8/197 (4%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
M SGAGKTTLL L +RV V G+ L+NG P+ + R GYV QQD + TV
Sbjct: 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQRSIGYVQQQDLHLPTSTV 853
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI----SGLSGGQRKRLALA 114
E L+F A L + + E + + V++ L + + GL+ QRKRL +
Sbjct: 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG 913
Query: 115 VQLLTEPQ-ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
V+L+ +P+ +LF DEPT+GLDS +A ++ L+++LA + ++C IHQP++ +FE+FD +
Sbjct: 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973
Query: 174 SLLAHGGLLAYHGQVSK 190
LL GG Y G + +
Sbjct: 974 LLLQKGGQTVYFGDLGE 990
Score = 92.5 bits (230), Expect = 5e-22
Identities = 65/212 (30%), Positives = 94/212 (44%), Gaps = 19/212 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRISG---YVAQQDFLIEEL 56
G+G +TLL + G V+G I +G + G Y A+ D L
Sbjct: 95 RPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE-IKKHYRGDVVYNAETDVHFPHL 153
Query: 57 TVLEHLQFMAKL-TMDRR---TTWLELNKTITRV-MENLGINHRRQVQ-----ISGLSGG 106
TV E L F A+ T R + E K I V M G++H R + + G+SGG
Sbjct: 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR-IVICAIHQPTSG 165
+RKR+++A L +I D T GLDS +A + LK A + AI+Q +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 166 VFEKFDTVSLLAHGGLLAYHGQVSKVLKHFAK 197
+E FD V +L G + Y G K ++F K
Sbjct: 274 AYELFDKVIVLYEGYQI-YFGPADKAKQYFEK 304
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 134 bits (340), Expect = 1e-36
Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 10/205 (4%)
Query: 1 MSPSGAGKTTLLAAL-NKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
M SGAGKTTL+ L ++ G ++G+I ++G P + +RISGY Q D ++TV
Sbjct: 912 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV-----QISGLSGGQRKRLALA 114
E L + A L + + + E + VME + +++ + ++GLS QRKRL +A
Sbjct: 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
V+L+ P I+F DEPT+GLD+ +A V+ ++ R V+C IHQP+ +FE FD +
Sbjct: 1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1091
Query: 175 LLAHGGLLAYHGQVS----KVLKHF 195
L+ GG + Y G + K++++F
Sbjct: 1092 LMKRGGQVIYSGPLGRNSHKIIEYF 1116
Score = 77.2 bits (190), Expect = 1e-16
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 44/236 (18%)
Query: 1 MSPSGAGKTTLLAAL-NKRVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
+ P +GKTTLL AL K L V GEI NG ++ V + S Y++Q D + +TV
Sbjct: 197 LGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ------------------- 99
E L F A+ T +L + R ++ GI +V
Sbjct: 257 KETLDFSARC--QGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDY 314
Query: 100 -------------------ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANN 140
I G+SGGQ+KR+ ++ + LF DE +TGLDS +
Sbjct: 315 TLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 374
Query: 141 VVNLLKQLA-CESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
+V L+Q+ V+ ++ QP F+ FD + LL+ G ++ Y G +L+ F
Sbjct: 375 IVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV-YQGPRDHILEFF 429
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 129 bits (325), Expect = 6e-35
Identities = 72/201 (35%), Positives = 115/201 (57%), Gaps = 8/201 (3%)
Query: 1 MSPSGAGKTTLLAALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
+ PSG+GK+TLL AL R++G G IL N ++ ++ R G+V Q D L LTV
Sbjct: 100 LGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLTVR 158
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-----ISGLSGGQRKRLALA 114
E L F + L + + T E V+ LG+ I G+SGG+RKR+++A
Sbjct: 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
++L P +L DEPT+GLD+ +A +V L LA + + ++ ++HQP+S V++ FD+V
Sbjct: 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL 278
Query: 175 LLAHGGLLAYHGQVSKVLKHF 195
+L+ G L + G+ S + +F
Sbjct: 279 VLSEGRCL-FFGKGSDAMAYF 298
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 108 bits (272), Expect = 1e-29
Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 19/186 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT---VMSRISGYVAQ--QDFLIE 54
P+G+GK+TLL LN GL+ GE+L++G +++ + R G V Q D
Sbjct: 35 PNGSGKSTLLRLLN----GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90
Query: 55 ELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
TV E + F + L + E+ + + +E +G+ R LSGGQ++R+A+
Sbjct: 91 -PTVEEEVAFGLENLGLPEE----EIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAI 145
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
A L +P IL DEPT GLD ++ LLK+L E + +I H + E D V
Sbjct: 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRV 204
Query: 174 SLLAHG 179
+L G
Sbjct: 205 IVLEDG 210
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 106 bits (268), Expect = 4e-29
Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNG--CPISRTVMSRISGYVAQQDFLIEELT 57
P+GAGKTTL+ L L G I ++G + R GY+ Q+ + T
Sbjct: 33 PNGAGKTTLMRIL----ATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V E L ++A L + E+ + V+E + + R + +I LSGG R+R+ +A L
Sbjct: 89 VREFLDYIAWL---KGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
+ +P IL DEPT GLD NLL +L E RIVI + H V + V++L
Sbjct: 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHI-VEDVESLCNQVAVL- 202
Query: 178 HGGLLAYHG 186
+ G L + G
Sbjct: 203 NKGKLVFEG 211
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 106 bits (268), Expect = 1e-28
Identities = 66/203 (32%), Positives = 91/203 (44%), Gaps = 23/203 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRISGYVAQQ-----DFLIEEL 56
P+GAGK+TLL A+ +K GEI + G P+ R RI GYV Q+ F I
Sbjct: 38 PNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRI-GYVPQKSSVDRSFPI--- 92
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKT-----ITRVMENLGINHRRQVQISGLSGGQRKRL 111
TV + + L + W + +E +G+ R QI LSGGQ++R+
Sbjct: 93 TVKD----VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV 148
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171
LA L P +L DEP TG+D + +LLK+L E + V+ H V FD
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFD 207
Query: 172 TVSLLAHGGLLAYHGQVSKVLKH 194
V L L G +VL
Sbjct: 208 RVICLNRH--LIASGPPEEVLTE 228
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 104 bits (261), Expect = 6e-28
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 1 MSPSGAGKTTLL---AALNKRVKGLVQGEILLNGCPISRTVMSRIS-------GYVAQQD 50
+ PSG+GK+TLL L++ GE+ ++G IS+ ++ G+V Q
Sbjct: 36 VGPSGSGKSTLLNILGGLDR----PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF 91
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
L+ +LT LE+++ L + E ++E +G+ R S LSGGQ++R
Sbjct: 92 NLLPDLTALENVELPLLLAGVPKKERRER---AEELLERVGLGDRLNHYPSELSGGQQQR 148
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEK 169
+A+A L +P+I+ DEPT LDS + V+ LL++L E+ ++ H P + E
Sbjct: 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE--LAEY 206
Query: 170 FDTV 173
D +
Sbjct: 207 ADRI 210
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 103 bits (259), Expect = 1e-27
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI--SRTVMSRISGYVAQQDFLIEELT 57
+GAGKTT L L G ++ G +NG I R + GY Q D L +ELT
Sbjct: 36 HNGAGKTTTLKMLT----GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V EHL+F A+L + E+ + + ++ LG+ + + LSGG +++L+LA+ L
Sbjct: 92 VREHLRFYARL---KGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIAL 148
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+ P +L DEPT+GLD S + +L+ ++ I++
Sbjct: 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIIL 187
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 102 bits (257), Expect = 2e-27
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 29/197 (14%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQ-----DFLIE 54
P+GAGK+TLL K + GL+ G I + G P+ + RI GYV Q+ DF I
Sbjct: 33 PNGAGKSTLL----KAILGLLKPTSGSIRVFGKPLEKER-KRI-GYVPQRRSIDRDFPI- 85
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKT-----ITRVMENLGINHRRQVQISGLSGGQRK 109
+V + + + + + +E +G++ QI LSGGQ++
Sbjct: 86 --SVRD----VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQ 139
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
R+ LA L+ +P +L DEP G+D + ++ LL++L E ++ H V E
Sbjct: 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEY 198
Query: 170 FDTVSLLAHGGLLAYHG 186
FD V LL + G
Sbjct: 199 FDRVLLLNRT--VVASG 213
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 102 bits (257), Expect = 2e-27
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS------RTVMSRIS-GYVAQQD 50
+ PSG+GK+TLL L GL + GE+L+NG ++ + R G+V Q
Sbjct: 37 VGPSGSGKSTLLNLLG----GLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNF 92
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRK 109
L+ +LTVLE+++ + + ++E LG+ R + S LSGGQ++
Sbjct: 93 NLLPDLTVLENVELPLLIAGKSAG---RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ 149
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFE 168
R+A+A L+ P+I+ DEPT LDS +A V+ LL++L E + +I H P + +
Sbjct: 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAK 207
Query: 169 KFDTVSLLAHGGL 181
D V L G +
Sbjct: 208 YADRVIELKDGKI 220
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 101 bits (254), Expect = 7e-27
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 20/202 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR----TVMSRISGYVAQ--QDFLI 53
P+G+GK+TLL LN GL++ GE+L++G S + + G V Q D L
Sbjct: 38 PNGSGKSTLLKLLN----GLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
TV + + F + R E+ + + +E +G+ LSGGQ++R+A+
Sbjct: 94 GP-TVEDEVAFGLENLGLPRE---EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAI 149
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDT 172
A L P+IL DEPT GLD ++ LLK+L E +I H V E D
Sbjct: 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADR 208
Query: 173 VSLLAHGGLLAYHGQVSKVLKH 194
V +L G +L G +++
Sbjct: 209 VVVLDDGKIL-ADGDPAEIFND 229
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 100 bits (251), Expect = 1e-26
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 13/180 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-------GYVAQQDFLI 53
+ SG+GK+TLL + ++ G++ LNG + S GY+ Q LI
Sbjct: 30 IGESGSGKSTLLNIIGL-LEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALI 88
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
E TV E+L K + E + +E +G+N + + +I LSGG+++R+AL
Sbjct: 89 ENETVEENLDLGLKYKKLSKK---EKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVAL 145
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
A +L P ++ DEPT LD + + V++LL +L E + +I H P V ++ D V
Sbjct: 146 ARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRV 203
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 101 bits (253), Expect = 2e-26
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 14/169 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
P+G+GK+TLL L + GE+LL+G I S +++ YV Q LTV
Sbjct: 36 PNGSGKSTLLKCLA-GLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94
Query: 60 EHLQFMAKLTMDRRTTWLELNKT-----ITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
E + L + +E LG+ H + LSGG+R+R+ +A
Sbjct: 95 E----LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIA 150
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQP 162
L E IL DEPT+ LD V+ LL+ L E + + + H
Sbjct: 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 99.6 bits (249), Expect = 7e-26
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 27/179 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRISGYVAQQDFL 52
PSGAGK+TLL LN GLV+ G +L++G I+ R + +I G + QQ L
Sbjct: 35 PSGAGKSTLLRCLN----GLVEPTSGSVLIDGTDINKLKGKALRQLRRQI-GMIFQQFNL 89
Query: 53 IEELTVLEHLQFMAKLTMDRRTTW---LELNKTITRV-----MENLGINHRRQVQISGLS 104
IE L+VLE++ +L RR+TW L + +E +G+ + + LS
Sbjct: 90 IERLSVLENV-LSGRL--GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLS 146
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQP 162
GGQ++R+A+A L+ +P+++ DEP LD S+ V++LLK++ E I VI ++HQ
Sbjct: 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 97.1 bits (243), Expect = 1e-25
Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 50/160 (31%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT---VMSRISGYVAQQDFLIEEL 56
P+GAGKTTL+ + GL++ GEI + G I + V RI GY+ ++ L E L
Sbjct: 34 PNGAGKTTLIKIIL----GLLKPDSGEIKVLGKDIKKEPEEVKRRI-GYLPEEPSLYENL 88
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV E+L+ LSGG ++RLALA
Sbjct: 89 TVRENLK---------------------------------------LSGGMKQRLALAQA 109
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LL +P++L DEPT+GLD S LL++L E + ++
Sbjct: 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 97.7 bits (244), Expect = 1e-25
Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 15/164 (9%)
Query: 1 MSPSGAGKTTL---LAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEEL 56
+GAGKTTL LA L K G ILLNG PI + GYV Q D+ +
Sbjct: 32 TGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERRKSIGYVMQDVDYQLFTD 87
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+V E L K N+ V+++L + ++ LSGGQ++RLA+A
Sbjct: 88 SVREELLLGLKELDAG-------NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA 140
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
LL+ +L DEPT+GLD + V L+++LA + + VI H
Sbjct: 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 95.8 bits (239), Expect = 6e-25
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ--GEILLNGCPISRTVMS--RISGYVAQQDFLIEEL 56
+ G+G +TLL AL R +G V G+I NG P YV+++D L
Sbjct: 39 LGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV E L F + + + G+SGG+RKR+++A
Sbjct: 99 TVRETLDFALRCKGNE--------------------------FVRGISGGERKRVSIAEA 132
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV-ICAIHQPTSGVFEKFDTVSL 175
L++ +L D T GLDS +A ++ ++ +A + +++Q + +++ FD V +
Sbjct: 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192
Query: 176 LAHGGLLAYHG 186
L G Y+G
Sbjct: 193 LY-EGRQIYYG 202
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 92.2 bits (230), Expect = 3e-23
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 31/200 (15%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS--------GYVAQQ 49
+ PSG+GK+TLL + + GL++ GE+L++G IS +S G + Q
Sbjct: 32 IGPSGSGKSTLL----RLIVGLLRPDSGEVLIDGEDISG--LSEAELYRLRRRMGMLFQS 85
Query: 50 DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL---GINHRRQVQISGLSGG 106
L + LTV E++ F R T L + V+E L G+ + + LSGG
Sbjct: 86 GALFDSLTVFENVAFPL-----REHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGG 140
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE---SRIVICAIHQPT 163
+KR+ALA L +P++L DEPT GLD ++ + +L++ L E + I++ H
Sbjct: 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT--HDLD 198
Query: 164 SGVFEKFDTVSLLAHGGLLA 183
+ F D +++L G ++A
Sbjct: 199 T-AFAIADRIAVLYDGKIVA 217
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 90.4 bits (225), Expect = 2e-22
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLIEE 55
PSGAGK+TLL +N R+ G ILL G I+ R + RI G + Q LIE
Sbjct: 36 PSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKKLRKLRRRI-GMIFQHYNLIER 93
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITR--------VMENLGINHRRQVQISGLSGGQ 107
LTVLE++ +L + TW L + +E +G+ + + LSGGQ
Sbjct: 94 LTVLENV-LHGRLG--YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
++R+A+A L +P ++ DEP LD ++ V++ LK++ E I VI +HQ
Sbjct: 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 88.1 bits (219), Expect = 2e-22
Identities = 50/160 (31%), Positives = 68/160 (42%), Gaps = 52/160 (32%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
P+G+GK+TLL A+ +K GEIL++G I++
Sbjct: 33 PNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK-------------------------- 65
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
L RR + LSGGQR+R+ALA LL P
Sbjct: 66 -------------------------LPLEELRRRIGYVPQLSGGQRQRVALARALLLNPD 100
Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
+L DEPT+GLD S ++ LL++LA E R VI H P
Sbjct: 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 89.6 bits (223), Expect = 6e-22
Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 36/204 (17%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNG---CPISRT----VMSRISGYVAQQD 50
+ SG+GK+TLL + + GL+ +GEIL++G +S + R+ G + QQ
Sbjct: 40 LGGSGSGKSTLL----RLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQG 94
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-------- 102
L LTV E++ F R T L + V+ L V + G
Sbjct: 95 ALFSSLTVFENVAFPL-----REHTKLPESLIRELVLMKL-----ELVGLRGAAADLYPS 144
Query: 103 -LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
LSGG RKR+ALA + +P++LF DEPT+GLD SA + L+++L + VI H
Sbjct: 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204
Query: 161 QPTSGVFEKFDTVSLLAHGGLLAY 184
S + D V++LA G ++A
Sbjct: 205 DLDS-LLTIADRVAVLADGKVIAE 227
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 87.5 bits (218), Expect = 7e-22
Identities = 57/186 (30%), Positives = 80/186 (43%), Gaps = 43/186 (23%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TLL L +K GEILL+G + S ++R YV Q
Sbjct: 33 PNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQ----------- 80
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+E LG+ H + LSGG+R+R+ LA L
Sbjct: 81 --------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ 114
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFDTVSLLAH 178
EP IL DEPT+ LD ++ LL++LA E + V+ +H D V LL
Sbjct: 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKD 173
Query: 179 GGLLAY 184
G ++A
Sbjct: 174 GRIVAQ 179
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 88.5 bits (220), Expect = 7e-22
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 11/163 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TL + L R+ +G+I + G + R ++R+ G V QQ L +L+V
Sbjct: 35 PNGAGKSTLFSLLT-RLYVAQEGQISVAGHDLRRAPRAALARL-GVVFQQPTLDLDLSVR 92
Query: 60 EHLQFMAKL-TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
++L++ A L + R E I ++ LG+ R ++ L+GG R+R+ +A LL
Sbjct: 93 QNLRYHAALHGLSRA----EARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALL 148
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
P +L DEPT GLD S + ++ LA + + V+ A H
Sbjct: 149 HRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATH 191
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 85.7 bits (213), Expect = 2e-21
Identities = 53/185 (28%), Positives = 74/185 (40%), Gaps = 45/185 (24%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS-----RISGYVAQQDFLIEE 55
+ PSG+GK+TLL + + G IL++G ++ R G V Q L
Sbjct: 32 LGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
LTVLE++ GLSGGQ++R+ALA
Sbjct: 91 LTVLENIAL-------------------------------------GLSGGQQQRVALAR 113
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVS 174
L +P +L DEPT+ LD + V LLK L + I V+ H D V
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE-AARLADRVV 172
Query: 175 LLAHG 179
+L G
Sbjct: 173 VLRDG 177
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 86.7 bits (215), Expect = 3e-21
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS---RTVMSRISGYVAQQDFLIEEL 56
P+GAGKTT L + + GL++ G ++G + R+ G+V+ L + L
Sbjct: 39 PNGAGKTTTL----RMLAGLLEPDAGFATVDGFDVVKEPAEARRRL-GFVSDSTGLYDRL 93
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
T E+L++ A L + EL + + + LG+ ++ G S G R+++A+A
Sbjct: 94 TARENLEYFAGLYGLKGD---ELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
L+ +P +L DEPTTGLD + + ++QL + ++ + H V D V +L
Sbjct: 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI-MQEVERLCDRVVVL 209
Query: 177 AHGGLLA 183
G ++
Sbjct: 210 HRGRVVY 216
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 86.9 bits (216), Expect = 3e-21
Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 19/201 (9%)
Query: 4 SGAGKTTLLAALNKRVKGL---VQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
SGAGK+TL+ +N GL G +L++G ++ R RI G + Q L+
Sbjct: 40 SGAGKSTLIRCIN----GLERPTSGSVLVDGTDLTLLSGKELRKARRRI-GMIFQHFNLL 94
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
TV E++ ++ + E+ + + ++E +G+ + + LSGGQ++R+ +
Sbjct: 95 SSRTVFENVALPLEIAGVPKA---EIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGI 151
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
A L P++L CDE T+ LD + +++ LL+ + E + I I V D V
Sbjct: 152 ARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211
Query: 174 SLLAHGGLLAYHGQVSKVLKH 194
+++ G ++ G V +V +
Sbjct: 212 AVMEKGEVVEE-GTVEEVFAN 231
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 86.6 bits (215), Expect = 3e-21
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 3 PSGAGKTTLL---AALNKRVKGLVQ--GEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
PSG+GKTTLL L +G ++ G+ L + R GY+ Q L+ LT
Sbjct: 39 PSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
+++Q MA L + ++ E + ++E +G+ LSGGQ++R+A+A L
Sbjct: 99 ARQNVQ-MA-LELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
+ P+++ DEPT LDS S +VV L+++LA E
Sbjct: 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 83.5 bits (207), Expect = 4e-21
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 9 TTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELTVLEHLQF 64
+TLL + ++ G ILL+G + ++ G V Q L ELTV E+L F
Sbjct: 1 STLLKLITGLLQP-TSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59
Query: 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAVQLLTEPQI 123
+ + E + +E +G+ + + LSGGQ++R+A+A LL +P++
Sbjct: 60 ----GLRDK----EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 124 LFCDEPTT 131
L DEPT
Sbjct: 112 LLLDEPTA 119
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 86.5 bits (215), Expect = 8e-21
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV------MSRISGYVAQQDFLIEEL 56
PSGAGK+TLL +LN V GEIL NG I++ + R G + QQ L+ L
Sbjct: 38 PSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL 96
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITR--------VMENLGINHRRQVQISGLSGGQR 108
+VLE++ +L +TW L ++ +E +GI + + S LSGGQ+
Sbjct: 97 SVLENVLL-GRL--GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
+R+A+A L+ +P+I+ DEP LD SA V+++LK + E I VI +HQ
Sbjct: 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 85.6 bits (213), Expect = 9e-21
Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTV----MSRISGYVAQQDFLIEE 55
PSG+GK+TLL LN GL G I ++G + + R G V QQ L
Sbjct: 36 PSGSGKSTLLRCLN----GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH 91
Query: 56 LTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
LTVLE++ + + + E + ++E +G+ + + LSGGQ++R+A+
Sbjct: 92 LTVLENVTLAPVKVKKLSKA----EAREKALELLEKVGLADKADAYPAQLSGGQQQRVAI 147
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
A L +P+++ DEPT+ LD V++++K LA E +I H+
Sbjct: 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 84.8 bits (210), Expect = 2e-20
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGY-----VAQQDF-LIEEL 56
PSGAGK+TLL + K G I +NG +S I V QDF L+ +
Sbjct: 35 PSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
V E++ F ++T K + +E +G++H+ + + LSGG+++R+A+A
Sbjct: 94 NVYENVAFALEVTGVPPREI---RKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARA 150
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
++ P IL DEPT LD + ++NLLK++ V+ A H
Sbjct: 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 84.8 bits (211), Expect = 2e-20
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
P+GAGKTTL ++ G ++ G +L +G I+ I+ G Q L E
Sbjct: 34 PNGAGKTTLFNLIS----GFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89
Query: 56 LTVLEHLQFMAKLTMDRRTTWL---------ELNKTITRVMENLGINHRRQVQISGLSGG 106
LTVLE++ M + L E + ++E +G+ LS G
Sbjct: 90 LTVLENV--MVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYG 147
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166
Q++RL +A L T+P++L DEP GL+ + L+++L E I + + V
Sbjct: 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVV 206
Query: 167 FEKFDTVSLLAHGGLLA 183
D V++L G ++A
Sbjct: 207 MSLADRVTVLDQGRVIA 223
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 83.7 bits (208), Expect = 3e-20
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 20/172 (11%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS------RTVMSRISGYVAQQDF 51
+ PSG+GK+TLL +N L G I+++G ++ + ++ G V QQ
Sbjct: 32 IGPSGSGKSTLLRCIN----LLEEPDSGTIIIDGLKLTDDKKNINELRQKV-GMVFQQFN 86
Query: 52 LIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
L LTVLE++ + M + E + ++E +G+ + + LSGGQ++
Sbjct: 87 LFPHLTVLENITLAPIKVKGMSKA----EAEERALELLEKVGLADKADAYPAQLSGGQQQ 142
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
R+A+A L P+++ DEPT+ LD V++++K LA E ++ H+
Sbjct: 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 82.8 bits (206), Expect = 3e-20
Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 54/183 (29%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIEEL 56
PSG+GK+TLL L L GEIL++G + + + YV Q FL
Sbjct: 36 PSGSGKSTLLKLLL----RLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL---- 87
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+ TI EN+ LSGGQR+R+A+A
Sbjct: 88 ----------------------FSGTI---RENI------------LSGGQRQRIAIARA 110
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
LL +P IL DE T+ LD + ++ L+ LA +++ A H+ ++ D + +L
Sbjct: 111 LLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA-HRLST--IRDADRIIVL 167
Query: 177 AHG 179
G
Sbjct: 168 DDG 170
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 83.7 bits (208), Expect = 4e-20
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
P+GAGKTT + GLV G+ILL+G I++ M + + GY+ Q+ + +
Sbjct: 34 PNGAGKTTTF----YMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
LTV E++ + ++ + E + ++E I H R+ + S LSGG+R+R+ +A
Sbjct: 90 LTVEENILAVLEIRGLSKKEREEKLEE---LLEEFHITHLRKSKASSLSGGERRRVEIAR 146
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
L T P+ L DEP G+D + ++ ++K L
Sbjct: 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 84.0 bits (208), Expect = 5e-20
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
+GAGKTTLL + + G++ ++G R V +I G + + L LT
Sbjct: 36 ENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKI-GVLFGERGLYARLTAR 93
Query: 60 EHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E+L++ A+L + R+ E+ I + + L + ++ S G ++++A+A L+
Sbjct: 94 ENLKYFARLNGLSRK----EIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV 149
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+P IL DEPT+GLD + + +KQL E R VI + H
Sbjct: 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 84.6 bits (210), Expect = 9e-20
Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 17/201 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT------VMSRISGYVAQQDFLIEEL 56
SGAGK+TLL +N ++ G + ++G ++ + + G + Q L+
Sbjct: 40 YSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98
Query: 57 TVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
TV E++ F +L + + E+ + + ++E +G++ + + LSGGQ++R+A+A
Sbjct: 99 TVFENVAFPLELAGVPKA----EIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQPTSGVFEKF-DTV 173
L P+IL CDE T+ LD + +++ LLK + E + I I H+ V ++ D V
Sbjct: 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME--VVKRICDRV 212
Query: 174 SLLAHGGLLAYHGQVSKVLKH 194
++L G L G VS+V +
Sbjct: 213 AVL-DQGRLVEEGTVSEVFAN 232
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 82.0 bits (203), Expect = 2e-19
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
P+GAGKTT + L +K G + G + R V RI G V Q + +ELT
Sbjct: 34 PNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRI-GIVFQDLSVDDELTGW 91
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
E+L A+L E + I +++ +G+ + SGG R+RL +A L+
Sbjct: 92 ENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH 148
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQL 148
P++LF DEPT GLD + +V +++L
Sbjct: 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 84.6 bits (210), Expect = 2e-19
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCP---ISRTVMSRISGYVAQQDFLIEELTVL 59
SGAGK+TLL L + QGEI +NG +S + +V+Q +L T+
Sbjct: 355 ASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIR 412
Query: 60 EHLQFMA-KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E++ + + L+ + V + G++ +GLSGGQ +RLALA LL
Sbjct: 413 ENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL 472
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
+ +L DEPT LD+ + ++ L++LA + + V+ H+ D + +L +
Sbjct: 473 SPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLE--DAADADRIVVLDN 529
Query: 179 GGLLA 183
G L+
Sbjct: 530 GRLVE 534
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 81.2 bits (201), Expect = 3e-19
Identities = 51/186 (27%), Positives = 98/186 (52%), Gaps = 14/186 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
P+GAGKTT + + G++ GE+L +G P+ +RI GY+ ++ L ++ V+
Sbjct: 34 PNGAGKTTTIRMIL----GIILPDSGEVLFDGKPLDIAARNRI-GYLPEERGLYPKMKVI 88
Query: 60 EHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
+ L ++A+L + + E + I +E L ++ ++ LS G ++++ ++
Sbjct: 89 DQLVYLAQLKGLKKE----EARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI 144
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
+P++L DEP +GLD + + +++++LA + VI + HQ V E D V LL
Sbjct: 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL-VEELCDRVLLLNK 203
Query: 179 GGLLAY 184
G + Y
Sbjct: 204 GRAVLY 209
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 80.5 bits (199), Expect = 4e-19
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMS--RISGYVAQQDFLIEELT 57
P+G GKTTLL L GL++ GE+ NG ++ R Y+ L EL+
Sbjct: 34 PNGIGKTTLLRIL----AGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
LE+L F A + + T + + +G+ + + LS GQ++RLALA
Sbjct: 90 ALENLHFWAAIHGGAQRTIEDA-------LAAVGLTGFEDLPAAQLSAGQQRRLALARLW 142
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
L+ + DEPTT LD + LL+ IV+ HQ
Sbjct: 143 LSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 81.1 bits (201), Expect = 6e-19
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 12/158 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
PSG GK+TLL + GL + GE+LL+G P++ GYV Q+D L+ LTVL
Sbjct: 37 PSGCGKSTLLRL----IAGLEKPTSGEVLLDGRPVTGPGPDI--GYVFQEDALLPWLTVL 90
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+++ +L R + E + ++E +G+ LSGG R+R+A+A L T
Sbjct: 91 DNVALGLEL---RGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT 147
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
P++L DEP LD+ + + + L +L E+R +
Sbjct: 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 82.1 bits (203), Expect = 7e-19
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
P+GAGKTT + L ++ G + G + R V I G V Q + E+LT
Sbjct: 27 PNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSI-GIVPQYASVDEDLTGR 84
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
E+L+ M +L E + ++E + + SGG R+RL +A L+
Sbjct: 85 ENLEMMGRL---YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH 141
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+P +LF DEPTTGLD + + + ++ L E ++ H
Sbjct: 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 82.4 bits (203), Expect = 2e-18
Identities = 52/183 (28%), Positives = 98/183 (53%), Gaps = 14/183 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT--VMSRISGYVAQQDFLIEELTV 58
+GAGKTT L+ L GL+ G +L+ G I + + G Q + L LTV
Sbjct: 965 NGAGKTTTLSILT----GLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
EH+ F A+L + +W E + ++E+ G++H+R + LSGG +++L++A+ +
Sbjct: 1021 AEHILFYAQL---KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
+ +++ DEPT+G+D YS ++ +LL + I++ H + + D +++++
Sbjct: 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLG--DRIAIISQ 1135
Query: 179 GGL 181
G L
Sbjct: 1136 GRL 1138
Score = 60.0 bits (145), Expect = 8e-11
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEELT 57
+GAGKTT L + G+ + G +++++ IS GY Q D + + LT
Sbjct: 1974 NGAGKTTTFKMLTGDTT-VTSGDATVAG----KSILTNISDVHQNMGYCPQFDAIDDLLT 2028
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
EHL A+L R E+ K +++LG++ SGG +++L+ A+ L
Sbjct: 2029 GREHLYLYARL---RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+ P ++ DEPTTG+D + + N + + E R V+ H
Sbjct: 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 78.7 bits (195), Expect = 3e-18
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS-RTVMSRISGYVAQQDFLIEELTV 58
PSG GKTTLL + GL GEIL++G ++ R G V Q L LTV
Sbjct: 34 PSGCGKTTLLRLIA----GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89
Query: 59 LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
E++ F + + + E+ + ++E +G+ LSGGQ++R+ALA L
Sbjct: 90 AENIAFGLKLRGVPKA----EIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL 145
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
EP +L DEP + LD+ + LK+L
Sbjct: 146 AREPSLLLLDEPLSALDAKLREELREELKEL 176
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 78.5 bits (194), Expect = 5e-18
Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 18/199 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMS---RISGYVAQQDFLIEEL 56
P+G+GK+ LL + + G ++ G+ILLNG I T + R YV Q L +
Sbjct: 33 PTGSGKSVLL----ETIAGFIKPDSGKILLNGKDI--TNLPPEKRDISYVPQNYALFPHM 86
Query: 57 TVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
TV +++ + + K +D+ E+ + + + E LGI+H + LSGG+++R+A+A
Sbjct: 87 TVYKNIAYGLKKRKVDK----KEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIAR 142
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
L+ P+IL DEP + LD + + LK++ E + + + + D V++
Sbjct: 143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAI 202
Query: 176 LAHGGLLAYHGQVSKVLKH 194
+ +G L+ G+ +V K
Sbjct: 203 MLNGKLIQV-GKPEEVFKK 220
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 77.7 bits (192), Expect = 6e-18
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 15/182 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS--RTVMSRISGYVAQQDFLIEELT 57
P+GAGKTTLL L GL++ GE+ G PI R + Y+ Q + ELT
Sbjct: 36 PNGAGKTTLLRIL----AGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
LE+L F + TI + +G+ + + LS GQ++R+ALA
Sbjct: 92 ALENLHFWQRFHGSGNA------ATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW 145
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
L+ + DEP T LD + L+ A + IV+ HQP + + L A
Sbjct: 146 LSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASAQIRRLDLTA 205
Query: 178 HG 179
Sbjct: 206 TK 207
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 77.7 bits (192), Expect = 6e-18
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCP-------ISRTVMSRISGYVAQQD 50
SGAGK+TLL + + GL + G I+LNG I+ R G V QQ
Sbjct: 29 FGASGAGKSTLL----RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
L L V E+L F K +R E ++ +++ LG++H + LSGG+++R
Sbjct: 85 ALFPHLNVRENLAFGLKRKRNR-----EDRISVDELLDLLGLDHLLNRYPAQLSGGEKQR 139
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPT 163
+ALA L +P++L DEP + LD ++ LKQ+ I VI H +
Sbjct: 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 80.3 bits (199), Expect = 6e-18
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 31/214 (14%)
Query: 4 SGAGKTTLLAA---LNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDF-- 51
SG+GK+TL A L + GE++L+G + R + + + Q
Sbjct: 44 SGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTS 103
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-------RQVQISGLS 104
L +T+ + ++ +L K ++E +G+ Q LS
Sbjct: 104 LNPVMTIGDQIREALRLHGKGSRAEAR--KRAVELLEQVGLPDPERRDRYPHQ-----LS 156
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQPT 163
GG R+R+ +A+ L +P++L DEPTT LD + +++LLK L E + + I H
Sbjct: 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL- 215
Query: 164 SGVFEKF-DTVSLLAHGGLLAYHGQVSKVLKHFA 196
GV + D V ++ + G + G ++L +
Sbjct: 216 -GVVAELADRVVVM-YKGEIVETGPTEEILSNPQ 247
Score = 66.4 bits (163), Expect = 4e-13
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS-------GYVAQQDFL 52
SG+GK+TL L GL+ G I+ +G + T + L
Sbjct: 325 ESGSGKSTLARIL----AGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRL 111
+TV + L L + + E + ++E +G+ LSGGQR+R+
Sbjct: 381 NPRMTVGDILAE--PLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV 438
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
A+A L EP++L DEP + LD V+NLLK L
Sbjct: 439 AIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 77.8 bits (192), Expect = 8e-18
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 20/189 (10%)
Query: 4 SGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRIS-------GYVAQQDFLI 53
SG+GK+TLL L GL GE+L NG +S+ + + G++ Q L+
Sbjct: 40 SGSGKSTLLHLLG----GLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
+ T LE++ M L + E + ++E +G+ HR + S LSGG+R+R+A+
Sbjct: 96 PDFTALENVA-MPLLIGKKSVK--EAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI 152
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDT 172
A L+ +P ++ DEPT LD+ +A + +L+ +L E + H + +K D
Sbjct: 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL--ELAKKLDR 210
Query: 173 VSLLAHGGL 181
V + G L
Sbjct: 211 VLEMKDGQL 219
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 77.8 bits (192), Expect = 1e-17
Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNG-CPISRTV--MSRISGYVAQQDFLIEEL 56
P+GAGKTT L K + GL+Q GE+ + G P R + RI Q+ L +L
Sbjct: 55 PNGAGKTTTL----KILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
V++ +A + K + + E L + + LS GQR R +A
Sbjct: 111 PVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAA 167
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
LL EP+ILF DEPT GLD + N+ N LK+ E +
Sbjct: 168 LLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 77.6 bits (192), Expect = 1e-17
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 14/155 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
P+GAGKTT + GLV G+ILL+ I++ M + + GY+ Q+ + +
Sbjct: 38 PNGAGKTTTFYM----IVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
LTV +++ MA L + + K + ++E I H R + LSGG+R+R+ +A
Sbjct: 94 LTVEDNI--MAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
L P+ + DEP G+D + ++ ++K L
Sbjct: 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK 186
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 77.1 bits (190), Expect = 1e-17
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR-TVMSRISGYVAQQDFLIEEL 56
+ PSG+GK+TLL + GL Q G I LNG +R R G+V Q L + L
Sbjct: 32 LGPSGSGKSTLLRII----AGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV +++ F ++ R+ ++ + ++E + + + LSGGQR+R+ALA
Sbjct: 88 TVRDNIAFGLEI---RKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARA 144
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
L EPQ+L DEP LD+ + + L++L E + + E D + ++
Sbjct: 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVM 204
Query: 177 AHG 179
++G
Sbjct: 205 SNG 207
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 78.5 bits (194), Expect = 1e-17
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 21/141 (14%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGC------PISRTVMSRISGYVAQQDFLI 53
PSG GK+TLL + + GL + GEIL++G P R + V Q L
Sbjct: 37 PSGCGKSTLL----RMIAGLEEPTSGEILIDGRDVTDLPPEKRGI-----AMVFQNYALY 87
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
+TV E++ F KL R E++K + V + LG+ H + LSGGQR+R+AL
Sbjct: 88 PHMTVYENIAFGLKL---RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVAL 144
Query: 114 AVQLLTEPQILFCDEPTTGLD 134
A L+ +P++ DEP + LD
Sbjct: 145 ARALVRKPKVFLLDEPLSNLD 165
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 76.7 bits (189), Expect = 2e-17
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TLL K + G+++ GEI+ +G P +R + +I LIE +
Sbjct: 34 PNGAGKSTLL----KMITGILRPTSGEIIFDGHPWTRKDLHKIGS-------LIESPPLY 82
Query: 60 EHLQFMAKLTMDRRTTWLELNK-TITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E+L A+ + TT L L I V+ + + + + + S G ++RL +A+ LL
Sbjct: 83 ENLT--ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL 140
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
P++L DEPT GLD + L++ + VI + H S V + D + ++
Sbjct: 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH-ILSEVQQLADHIGII-S 198
Query: 179 GGLLAYHGQVSK 190
G+L Y G+++K
Sbjct: 199 EGVLGYQGKINK 210
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 76.0 bits (187), Expect = 2e-17
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISG--YVAQQDFLIEELT 57
P+G+GKTTLL L GL G +LLNG P+ S G Y+ + L+
Sbjct: 34 PNGSGKTTLLRIL----AGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
VLE+L+F D + + + +G+N ++ LS GQ++R+ALA L
Sbjct: 90 VLENLRFWHADHSD---------EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLL 140
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
L+ + DEPTT LD + +V+ HQ
Sbjct: 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 77.8 bits (192), Expect = 2e-17
Identities = 56/196 (28%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
P+GAGKTT + ++ +GEI NG P+S+ + +RI GY+ ++ L ++TV + L
Sbjct: 36 PNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRI-GYLPEERGLYPKMTVEDQL 93
Query: 63 QFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEP 121
+++A+L M + E+ K + +E L I ++ +I LS G ++++ ++ EP
Sbjct: 94 KYLAELKGMPKA----EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149
Query: 122 QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGL 181
++L DEP +GLD + + + + +L E +I + H+ V E D + +L G
Sbjct: 150 ELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR-MEHVEELCDRLLML-KKGQ 207
Query: 182 LAYHGQVSKVLKHFAK 197
+G V + + F K
Sbjct: 208 TVLYGTVEDIRRSFGK 223
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 76.8 bits (190), Expect = 3e-17
Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEELTV 58
P+GAGKTTL + K G ++ G I+ RI+ + F L LTV
Sbjct: 38 PNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTV 96
Query: 59 LE------HLQFMAKLTMDRRTTWLELNKTITRVMENL---GINHRRQVQISGLSGGQRK 109
LE H + + R E + R E L G+ LS GQ++
Sbjct: 97 LENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
RL +A L T+P++L DEP GL+ + L+++L + I I V
Sbjct: 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGL 216
Query: 170 FDTVSLLAHGGLLA 183
D + +L +G ++A
Sbjct: 217 ADRIVVLNYGEVIA 230
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 75.7 bits (187), Expect = 4e-17
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS------GYVAQQDFLIEEL 56
PSGAGK+TLL + + +G+IL+NG +SR I G V Q L+ +
Sbjct: 36 PSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94
Query: 57 TVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
TV E++ + + R E+ + ++ V++ +G+ H+ + S LSGG+++R+A+A
Sbjct: 95 TVYENVALPLRVIGKPPR----EIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIAR 150
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
++ +P +L DEPT LD + ++ L +++ V+ A H
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 77.0 bits (190), Expect = 6e-17
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 24/200 (12%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNG-------CPISRTVMSRISGYVAQQDFL 52
PSG+GKT+L+ + GL +G I LNG I R GYV Q L
Sbjct: 32 PSGSGKTSLINM----IAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
TV +L++ +M +++ LGI H LSGG+++R+A
Sbjct: 88 FPHYTVRGNLRYGMWKSM---------RAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVA 138
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
+ LLT P++L DEP LD ++ L++L E I I + V D
Sbjct: 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198
Query: 173 VSLLAHGGLLAYHGQVSKVL 192
V +L +G + A G + +V
Sbjct: 199 VVVLENGKVKAS-GPLEEVW 217
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 75.3 bits (185), Expect = 6e-17
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
PSG GK+TLL + + G +L G +S ++S Y AQ L + TV
Sbjct: 37 PSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVSTLKPEAYRQQVS-YCAQTPALFGD-TV 93
Query: 59 LEHLQFMAKLTMDR--RTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKRLALAV 115
++L F ++ R R L+L + + I+ LSGG+++R+AL
Sbjct: 94 EDNLIFPWQIRNRRPDRAAALDL-------LARFALPDSILTKNITELSGGEKQRIALIR 146
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQP 162
L P+IL DE T+ LD + N+ ++ + E + + I H
Sbjct: 147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 76.0 bits (187), Expect = 8e-17
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 19/192 (9%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPI--SRTVMSRIS---GYVAQQ-DFLIEELT 57
+GAGK+TL LN +K G IL +G PI SR + ++ G V Q D + +
Sbjct: 41 NGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V + + F A ++ + E+ K + ++ GI H + LS GQ+KR+A+A L
Sbjct: 100 VYQDVSFGA---VNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLL 176
+ EP++L DEPT GLD + ++ LL ++ E + +I A H D V L
Sbjct: 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD--------IDIVPLY 208
Query: 177 AHGGLLAYHGQV 188
+ G+V
Sbjct: 209 CDNVFVMKEGRV 220
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 77.3 bits (191), Expect = 8e-17
Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 24/173 (13%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIEEL 56
PSGAGK+TLL L G V G I +NG P+ +V Q FL
Sbjct: 356 PSGAGKSTLLNLL----LGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG- 410
Query: 57 TVLEHLQFMAKLTMD-------RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
T+ E+++ D R E + + G++ +GLSGGQ +
Sbjct: 411 TIAENIRLARPDASDAEIREALERAGLDEFVAALPQ-----GLDTPIGEGGAGLSGGQAQ 465
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
RLALA L + +L DEPT LD+ + V+ L+ LA + R V+ H+
Sbjct: 466 RLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRL 517
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 77.3 bits (191), Expect = 9e-17
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISR---TVMSRISGYVAQQDFLIEEL 56
SG+GK+TLL K + GL QG ILL+G ++ + R GYV Q FL
Sbjct: 507 RSGSGKSTLL----KLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG- 561
Query: 57 TVLEHL-QFMAKLTMDRRTTWLELNKTITRVMEN-LGINHRRQVQISGLSGGQRKRLALA 114
++ E++ + T + +L + +G + + LSGGQR+RLALA
Sbjct: 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
LL++P+IL DE T+ LD + ++ L Q+ + R VI H+ + D +
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLS--TIRSADRII 678
Query: 175 LLAHG 179
+L G
Sbjct: 679 VLDQG 683
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 74.2 bits (183), Expect = 1e-16
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGY-----VAQQDF-LIEEL 56
PSGAGKTTLL L + +G++ + G ++R ++ V QDF L+ +
Sbjct: 36 PSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV E++ ++ + + + + +G+ H+ LSGG+++R+A+A
Sbjct: 95 TVYENVALPLEVRGKKEREI---QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
++ P +L DEPT LD + +++LLK+L VI A H
Sbjct: 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 75.9 bits (187), Expect = 2e-16
Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGC-------PISRTVMSRISGYVAQQDFL 52
SG+GKTTL+ + GL + GEI+LNG I R GYV Q+ L
Sbjct: 31 RSGSGKTTLIRL----IAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARL 86
Query: 53 IEELTVLEHLQFMAKLTM--DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
L+V +L++ K +RR ++ RV+E LGI H LSGG+++R
Sbjct: 87 FPHLSVRGNLRYGMKRARPSERRISF-------ERVIELLGIGHLLGRLPGRLSGGEKQR 139
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
+A+ LL+ P++L DEP LD ++ L++L E I I + V
Sbjct: 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199
Query: 171 DTVSLLAHGGLLA 183
D V +L G + A
Sbjct: 200 DRVVVLEDGRVAA 212
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 73.4 bits (181), Expect = 2e-16
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 3 PSGAGKTTLLAALNKRV-KGL---VQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
P+G+GKTTLL R+ GL G I L+G I ++ Y+ ++ + LTV
Sbjct: 36 PNGSGKTTLL-----RLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTV 90
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E+L+F A I +E +G+ + LS GQ++R+ALA L+
Sbjct: 91 AENLEFWAAFLGGEEL-------DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV 143
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
+ I DEPT LD+ + L++ + IVI A H P
Sbjct: 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 73.8 bits (182), Expect = 3e-16
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 20/170 (11%)
Query: 1 MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
+ PSG GK+TLL LN+ + G +GE+LL+G I + + G V Q+
Sbjct: 32 IGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI-----NHRRQVQISGLSGG 106
++ +++ + +L + L+ RV E L + ++ GLSGG
Sbjct: 92 PFP-GSIYDNVAYGLRLHGIKLKEELD-----ERVEEALRKAALWDEVKDRLHALGLSGG 145
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
Q++RL LA L EP++L DEPT+ LD S + L+ +L E IVI
Sbjct: 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVI 195
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 73.7 bits (182), Expect = 3e-16
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 3 PSGAGKTTL---LAALNKRVKG--LVQGEILLNGCPISRTVMSRISGYVAQQDF--LIEE 55
SG+GK+TL + L K G + G+ LL R + + V Q L
Sbjct: 39 ESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98
Query: 56 LTVLEHLQ--FMAKLTMDRRTTWLELNKTITRVMENLGIN----HRRQVQISGLSGGQRK 109
+T+ E + + ++ + + ++ +G+ +R + LSGGQR+
Sbjct: 99 MTIGEQIAEPLRIHGKLSKKE---ARKEAVLLLLVGVGLPEEVLNRYPHE---LSGGQRQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
R+A+A L P++L DEPT+ LD +++LLK+L
Sbjct: 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 74.5 bits (184), Expect = 4e-16
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 47/177 (26%)
Query: 4 SGAGKTTLLAAL-------NKRVKGLVQGEILLNGCPI---SRTVMSRISG----YVAQQ 49
SG+GK+ L A+ N R+ G GEIL +G + S + +I G + Q
Sbjct: 40 SGSGKSVLAKAIMGLLPKPNARIVG---GEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96
Query: 50 -----------DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV 98
I E + H + ++K E + ++E +GI +
Sbjct: 97 PMTSLNPVMTIGDQIAE-VLRLHGKGLSKK---------EAKERAIELLELVGIPDPERR 146
Query: 99 ------QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
+ LSGG R+R+ +A+ L P++L DEPTT LD +++LLK+L
Sbjct: 147 LKSYPHE---LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ 200
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 72.6 bits (179), Expect = 5e-16
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRT--VMSRISGYVAQQDFLIEE 55
+ P+GAGKTT + K + GL+ GEI +G + + RI + F
Sbjct: 32 LGPNGAGKTTTM----KIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGF-YPN 86
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
LT E+L+ +A+L R K I V++ +G+ + ++ G S G ++RL +A+
Sbjct: 87 LTARENLRLLARLLGIR-------KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIAL 139
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
LL P +L DEPT GLD + L+ L + V+ + H
Sbjct: 140 ALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 72.5 bits (179), Expect = 6e-16
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
PSG GK+TLL + GL + GE+L++G P++ R GYV QQD L+ LTVL
Sbjct: 38 PSGCGKSTLLRII----AGLERPTSGEVLVDGEPVTGPGPDR--GYVFQQDALLPWLTVL 91
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+++ +L + E + ++E +G++ LSGG R+R+ALA L
Sbjct: 92 DNVALGLEL---QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV 148
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
+P +L DEP + LD+ + + L + E+
Sbjct: 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 72.6 bits (178), Expect = 7e-16
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 20/170 (11%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQ-----DFL 52
+ P+GAGKTTLL A + GL+ +G + + G I GYV Q+ DF
Sbjct: 12 LGPNGAGKTTLLRA----ILGLIPPAKGTVKVAGAS-PGKGWRHI-GYVPQRHEFAWDFP 65
Query: 53 IE-ELTVLE-HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
I TV+ + L + + + RV G+ + LSGGQR+R
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV----GLTELADRPVGELSGGQRQR 121
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+ +A L T P +L DEP TGLD + + L +LA ++ H
Sbjct: 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 72.2 bits (178), Expect = 7e-16
Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 34/180 (18%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS----RTVMSRISGYVAQQDFLI 53
+ G+GK+TLL L GL + G +LL+G I + I GYV Q L
Sbjct: 36 IGRVGSGKSTLLKLL----AGLYKPTSGSVLLDGTDIRQLDPADLRRNI-GYVPQDVTLF 90
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN-----HRR--QVQIS----G 102
T+ +++ A L D R I R E G+ H +QI G
Sbjct: 91 YG-TLRDNITLGAPLADDER---------ILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGGQR+ +ALA LL +P IL DEPT+ +D S + L+QL + + +I H+P
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP 199
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 74.0 bits (182), Expect = 8e-16
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
PSG+GKTTLL + + GL G I +G +SR R G+V Q L +TV
Sbjct: 36 PSGSGKTTLL----RIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91
Query: 59 LEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
+++ F + L R + +T+++E + + H + LSGGQ++R+ALA L
Sbjct: 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151
Query: 118 LTEPQILFCDEPTTGLDS 135
EPQIL DEP LD+
Sbjct: 152 AVEPQILLLDEPFGALDA 169
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 72.4 bits (178), Expect = 8e-16
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR-------TVMSRISGYVAQQDFL 52
PSG+GK+TLLA L GL GE+ L G P+ + + +R G+V Q L
Sbjct: 44 PSGSGKSTLLAVL----AGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
I LT LE++ +L + + ++E +G+ R + LSGG+++R+A
Sbjct: 100 IPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVA 156
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
LA P +LF DEPT LD + + + +LL L E
Sbjct: 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 73.5 bits (181), Expect = 1e-15
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
PSG GKTTLL + + G Q GEILL+G I+ R G V Q L +TV
Sbjct: 39 PSGCGKTTLL----RMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E++ F L + ++ E+ + +E +G+ + LSGGQ++R+ALA L+
Sbjct: 95 EENVAF--GLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152
Query: 119 TEPQILFCDEPTTGLDS 135
EP++L DEP + LD+
Sbjct: 153 PEPKVLLLDEPLSALDA 169
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 72.4 bits (178), Expect = 1e-15
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-RTVMSRISGYVAQQDFLIEELTV 58
PSG+GKTTLL + + GL + G IL G + V R G+V Q L +TV
Sbjct: 36 PSGSGKTTLL----RLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQRKR 110
+++ F L + R+ + +V E L + VQ+ LSGGQR+R
Sbjct: 92 FDNVAF--GLRVKPRSERPPEAEIRAKVHELLKL-----VQLDWLADRYPAQLSGGQRQR 144
Query: 111 LALAVQLLTEPQILFCDEPTTGLDS 135
+ALA L EP++L DEP LD+
Sbjct: 145 VALARALAVEPKVLLLDEPFGALDA 169
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 72.1 bits (178), Expect = 1e-15
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 16/185 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR----TVMSRISGYVAQQDFLIEE 55
+GAGKTTLL + GLV+ G I+ +G I+ YV + +
Sbjct: 37 RNGAGKTTLLKTI----MGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALA 114
LTV E+L + + + + + L R+ Q +G LSGG+++ LA+A
Sbjct: 93 LTVEENLL-LGAYARRDKEAQERDLEEVYELFPRL---KERRNQRAGTLSGGEQQMLAIA 148
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
L++ P++L DEP+ GL + +K+L E + I + Q E D
Sbjct: 149 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY 208
Query: 175 LLAHG 179
+L +G
Sbjct: 209 VLENG 213
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 71.7 bits (177), Expect = 1e-15
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS----GYVAQQDFLIEE 55
+GAGKTTLL + GL+ G I +G I+ + GYV + + E
Sbjct: 34 RNGAGKTTLLKTI----MGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALA 114
LTV E+L A + + RV E R+ Q++G LSGG+++ LA+A
Sbjct: 90 LTVEENLLLGAYARRRAKRKA-----RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIA 144
Query: 115 VQLLTEPQILFCDEPTTGL 133
L++ P++L DEP+ GL
Sbjct: 145 RALMSRPKLLLLDEPSEGL 163
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 72.9 bits (179), Expect = 1e-15
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM--SRISGYVAQQDFLIEELTV 58
+ P+GAGK+T + + + G + + G + + R GY+ + + L ++ V
Sbjct: 34 LGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E+LQF+A + L + + ++E +G+ + +I LS G R+R+ LA L+
Sbjct: 93 REYLQFIAGI---YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI 149
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+P++L DEPTTGLD + N++K + + + +I + H
Sbjct: 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTH 190
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 73.3 bits (180), Expect = 1e-15
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIEEL 56
P+GAGKTTLL A + G + G +L+ G + S SR V Q L E
Sbjct: 37 PNGAGKTTLLRA----INGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
V + ++ R TW E ++ + R ME G+ ++ LSGG+R+R+ LA
Sbjct: 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLAR 152
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF-DTVS 174
L +L DEPT LD + L+++L + + + AIH ++ D +
Sbjct: 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA--RYCDELV 210
Query: 175 LLAHGGLLA 183
LLA G + A
Sbjct: 211 LLADGRVRA 219
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 71.6 bits (175), Expect = 2e-15
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 20/196 (10%)
Query: 1 MSPSGAGKTTLLAALNKRV-----KGLVQGEILLNGCPISRTVMSRIS---GYVAQQDFL 52
M PSG+GK+TLL LN+ + K V G++L G I + ++ G V QQ
Sbjct: 42 MGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNP 101
Query: 53 IEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGG 106
L++ +++ + K ++R E+ K + + +G + R S LSGG
Sbjct: 102 FPHLSIYDNIAYPLKSHGIKEKR----EIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166
Q++RL +A L +P++L DEPT+ +D ++ + L+ +L E IVI + H P V
Sbjct: 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS-HNPQQ-V 215
Query: 167 FEKFDTVSLLAHGGLL 182
D V+ L +G L+
Sbjct: 216 ARVADYVAFLYNGELV 231
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 72.0 bits (177), Expect = 2e-15
Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 38/180 (21%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-----GYVAQQ-DF 51
+ P+GAGK+TL N G+++ GE+L+ G PI S + G V Q D
Sbjct: 34 LGPNGAGKSTLFLHFN----GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDD 89
Query: 52 LIEELTVLEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG------ 102
+ TV E + F L+ + E+ K RV E L + V + G
Sbjct: 90 QLFAPTVEEDVAFGPLNLGLSKE------EVEK---RVKEAL-----KAVGMEGFENKPP 135
Query: 103 --LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
LSGGQ+KR+A+A L +P+I+ DEPT+GLD A+ ++ LL L E +I + H
Sbjct: 136 HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 72.3 bits (177), Expect = 3e-15
Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI-SRTVMSRIS-GYVAQQDFLIEE 55
+ P+GAGK+T+ + + G++ +G+I + G P+ SR ++R++ G V Q D L E
Sbjct: 36 LGPNGAGKSTI----ARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPE 91
Query: 56 LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
TV E+L + M R E+ I ++E + + V+++ LSGG ++RL LA
Sbjct: 92 FTVRENLLVFGRYFGMSTR----EIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLA 147
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
L+ +PQ+L DEPTTGLD ++ + + L+ L + ++ H
Sbjct: 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 72.2 bits (177), Expect = 3e-15
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI---SRTVMSRISGYVAQQDFLIE 54
+ P+GAGK+T+ + + G+ G+I + G P+ +R +RI G V Q D L
Sbjct: 73 LGPNGAGKSTI----ARMILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDNLDL 127
Query: 55 ELTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
E TV E+L + M R E+ I ++E + + ++S LSGG ++RL L
Sbjct: 128 EFTVRENLLVFGRYFGMSTR----EIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTL 183
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
A L+ +PQ+L DEPTTGLD ++ + + L+ L + ++ H
Sbjct: 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 70.8 bits (173), Expect = 5e-15
Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 20/206 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-----SRTVMSRISGYVAQQD 50
+ PSG GKTT L A+N R+ L V G ILL+G I M R G V Q+
Sbjct: 36 IGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94
Query: 51 FLIEELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLG-INHRRQVQISGLSGGQR 108
++V +++ KL + R +E+ + R + R + +GLSGGQ+
Sbjct: 95 NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA--IHQPTSGV 166
+RL +A L EP+IL DEPT+ LD S + +L+ L + I+I +HQ
Sbjct: 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAA--- 211
Query: 167 FEKFDTVSLLAHGGLLAYHGQVSKVL 192
DT S G L+ HG ++
Sbjct: 212 -RVSDTTSFFLVGDLVE-HGPTDQLF 235
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 70.7 bits (173), Expect = 7e-15
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 14/187 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQD-------FLIEEL 56
+G+GK+TL AL V+ L G+I + G P + + + YV Q + L+E++
Sbjct: 42 NGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDV 100
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
++ M L RR + + +T + + + R QI LSGGQ+KR+ LA
Sbjct: 101 VMMGRYGHMGWL---RRAKKRD-RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARA 156
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
+ + Q++ DEP TG+D + +++LL++L E + ++ + H G +F +++
Sbjct: 157 IAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN--LGSVTEFCDYTVM 214
Query: 177 AHGGLLA 183
G +LA
Sbjct: 215 VKGTVLA 221
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 71.1 bits (174), Expect = 9e-15
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 11/197 (5%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIEELT 57
SGAGK+TL+ +N ++ G ++++G ++ T R G + Q L+ T
Sbjct: 40 SGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V ++ +L T E+ + +T ++ +G+ + S LSGGQ++R+A+A L
Sbjct: 99 VFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
+ P++L CDE T+ LD + +++ LLK++ + I I V D V++++
Sbjct: 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215
Query: 178 HGGLLAYHGQVSKVLKH 194
G L G VS++ H
Sbjct: 216 -NGELIEQGTVSEIFSH 231
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 70.8 bits (174), Expect = 9e-15
Identities = 54/147 (36%), Positives = 71/147 (48%), Gaps = 28/147 (19%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS----RTVMSRISGYVAQQDFLIEE 55
PSGAGK+TLL + + GL G I LNG + V R G+V Q L
Sbjct: 36 PSGAGKSTLL----RIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQ 107
+TV +++ F K+ +R + RV E L R VQ+ G LSGGQ
Sbjct: 92 MTVADNIAFGLKVRKER----PSEAEIRARVEELL-----RLVQLEGLADRYPAQLSGGQ 142
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLD 134
R+R+ALA L EP++L DEP LD
Sbjct: 143 RQRVALARALAVEPKVLLLDEPFGALD 169
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 69.6 bits (171), Expect = 1e-14
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 35/164 (21%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISR----TVMSRISGYVAQQD----- 50
SG+GK+TL L GL G ILL+G P++ R V QD
Sbjct: 41 ESGSGKSTLARLL----AGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMV-FQDPYSSL 95
Query: 51 --FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN----HRRQVQISGLS 104
+ E L+ +R I +++ +G+ RR + LS
Sbjct: 96 NPRRTVGRILSEPLRPHGLSKSQQR---------IAELLDQVGLPPSFLDRRPHE---LS 143
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
GGQR+R+A+A L+ EP++L DEPT+ LD ++NLL +L
Sbjct: 144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL 187
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 71.3 bits (175), Expect = 1e-14
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 26/193 (13%)
Query: 3 PSGAGKTTLLAALNKRVKGLV------QGEILLNGCP---ISRTVMSRISGYVAQQDFLI 53
SG+GK+TL K LV GEILLNG I R + + Y+ Q+ ++
Sbjct: 508 MSGSGKSTL-------AKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF 560
Query: 54 EELTVLEHLQFMAK--LTMDRRTTWLELNKTITRVMEN--LGINHRRQVQISGLSGGQRK 109
++LE+L AK ++ D E+ + I +EN LG + S +SGGQ++
Sbjct: 561 SG-SILENLLLGAKENVSQDEIWAACEIAE-IKDDIENMPLGYQTELSEEGSSISGGQKQ 618
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
R+ALA LLT+ ++L DE T+ LD+ + +VN L L + + +I H+ + V ++
Sbjct: 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQ 674
Query: 170 FDTVSLLAHGGLL 182
D + +L HG ++
Sbjct: 675 SDKIIVLDHGKII 687
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 69.5 bits (171), Expect = 1e-14
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISRTVMS-----RISGYVAQQDFL-I 53
M P+G+GK+TL + K V +GEIL +G I +S R ++A Q + I
Sbjct: 36 MGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI--LELSPDERARAGIFLAFQYPVEI 93
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQRKR 110
+T + L+ R E K + E LG++ R V G SGG++KR
Sbjct: 94 PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE-GFSGGEKKR 152
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
+ LL EP++ DEP +GLD + V + L E R V+ H + K
Sbjct: 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP 212
Query: 171 DTVSLLAHG 179
D V +L G
Sbjct: 213 DKVHVLYDG 221
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 69.3 bits (170), Expect = 2e-14
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA---QQDFLIEELTVL 59
P+G GK+TLL + + G + L PIS +++ +A Q E +TV
Sbjct: 36 PNGCGKSTLLKCFARLLTPQ-SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94
Query: 60 E--------HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
E L +L+ + + + ME INH +++ LSGGQR+R
Sbjct: 95 ELVAYGRSPWLSLWGRLSAEDN-------ARVNQAMEQTRINHLADRRLTDLSGGQRQRA 147
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
LA+ L + ++ DEPTT LD ++ L+++L + + V+ +H
Sbjct: 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLH 196
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 69.4 bits (170), Expect = 2e-14
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 13/197 (6%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA----QQDFLIEEL 56
+ P+GAGK+TL N +K G +L+ G PI++ + + +V D I
Sbjct: 36 IGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94
Query: 57 TVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
TV + + F L +D T + ++ + LG+ R LSGG++KR+A+A
Sbjct: 95 TVEQDIAFGPINLGLDEET----VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAG 150
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPTSGVFEKFDTVS 174
+ EPQ+L DEPT GLD +++ L L VI + HQ V E D +
Sbjct: 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ-LDLVPEMADYIY 209
Query: 175 LLAHGGLLAYHGQVSKV 191
++ G ++AY G V ++
Sbjct: 210 VMDKGRIVAY-GTVEEI 225
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 68.7 bits (168), Expect = 2e-14
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 23/179 (12%)
Query: 1 MSPSGAGKTTLLAALNKRVK----GLVQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
M PSG GK+TLL N+ ++ V+GE+ L G I + I G V Q
Sbjct: 36 MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95
Query: 52 LIEELTVLEHLQFMAKLT--------MDRRTTWLELNKTITRVMENLGINHRRQVQISGL 103
LT+ +++ KL +D R W + +++ R S L
Sbjct: 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-----RLNDYPSNL 150
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
SGGQR+RL +A L +P+IL DEPT +D + LL +L E IV+ H P
Sbjct: 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT-HSP 208
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 70.1 bits (172), Expect = 2e-14
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
PSG+GK+TLLA L + L QGE+ L+G P+ + + R AQ L + TV
Sbjct: 369 PSGSGKSTLLATLAGLLDPL-QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVR 426
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRV-MENL------GINHRRQVQISGLSGGQRKRLA 112
E+L+ D EL + RV + + G++ + LSGG+R+RLA
Sbjct: 427 ENLRLARPDATDE-----ELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLA 481
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LA LL + IL DEPT LD+ +A+ ++ L A R V+ H
Sbjct: 482 LARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 67.3 bits (165), Expect = 3e-14
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 44/179 (24%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRISGYVAQQDFLIEELTVLE 60
SG+GK+TLL L +K QGEI L+G P+S +S + + Q+ +L +
Sbjct: 36 RSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD------ 88
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
T + NLG RR SGG+R+RLALA LL +
Sbjct: 89 -----------------------TTLRNNLG---RR------FSGGERQRLALARILLQD 116
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
I+ DEPT GLD + +++L+ ++ + + +I H T E D + L +G
Sbjct: 117 APIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG--IEHMDKILFLENG 172
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 68.6 bits (169), Expect = 3e-14
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQ-----DFLIE 54
P+GAGK+TLL AL+ + GE+ LNG P+ S ++R + Q F +E
Sbjct: 36 PNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
E V+ M + + E + + + + + H LSGG+++R+ LA
Sbjct: 95 E--VVA----MGR--APHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA 146
Query: 115 ---VQLLT---EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
QL P+ L DEPT+ LD ++V+ L +QLA E + VI +H
Sbjct: 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH 199
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 68.9 bits (169), Expect = 4e-14
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
PSG+GKTT L +N+ ++ GEIL++G IS + +I GYV QQ L LTV
Sbjct: 35 PSGSGKTTTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKI-GYVIQQIGLFPHLTV 92
Query: 59 LEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHR--RQVQISGLSGGQRKRLALAV 115
E++ + KL D+ + K +++ +G++ LSGGQ++R+ +A
Sbjct: 93 AENIATVPKLLGWDKE----RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVAR 148
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
L +P IL DEP LD + + +K+L
Sbjct: 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 67.9 bits (166), Expect = 5e-14
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
PSG GKTTLL + V +G I LNG I R G V Q + L+ L V++++
Sbjct: 39 PSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAER--GVVFQNEALLPWLNVIDNV 95
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
F +L + E+ +++ +G+ I LSGG R+R+ +A L EPQ
Sbjct: 96 AFGLQLRGIEKAQRREI---AHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152
Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACES 152
+L DEP LD+ + + LL L E+
Sbjct: 153 LLLLDEPFGALDALTREQMQELLLDLWQET 182
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 66.8 bits (163), Expect = 1e-13
Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 17/155 (10%)
Query: 4 SGAGKTTLLAALNKRVKGL---VQGEILLNGCPISR-------TVMSRISGYVAQQDFLI 53
SG+GK+TLL L GL G+++ NG P+S+ + ++ G++ Q L+
Sbjct: 44 SGSGKSTLLHLLG----GLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
+ T LE++ M L ++ E+N ++ +G+ HR + S LSGG+R+R+A+
Sbjct: 100 PDFTALENVA-MPLLIGKKKPA--EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI 156
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
A L+ P+++ DEPT LD+ +A+++ LL +L
Sbjct: 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 65.9 bits (161), Expect = 1e-13
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI--SR---TVMSRISGYVAQQ-DF 51
+ +GAGK+TLL LN GL++ G +L++G P+ SR + G V Q D
Sbjct: 24 LGANGAGKSTLLLHLN----GLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
+ V + + F L + E+ + + + +G + R+ LSGG++KR+
Sbjct: 80 QLFAADVDQDVAF-GPLNLGLSEA--EVERRVREALTAVGASGLRERPTHCLSGGEKKRV 136
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
A+A + P +L DEPT GLD ++ +L++L E V+ + H
Sbjct: 137 AIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 66.7 bits (163), Expect = 1e-13
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 8/164 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI-SRTVMSRI----SGYVAQQDFLIEELT 57
PSG+GK+TLL +NK ++ + G+++++G + V R+ +G V QQ +L LT
Sbjct: 35 PSGSGKSTLLRCINK-LEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
LE++ F R + E K ++ +G+ R S LSGGQ++R+A+A L
Sbjct: 94 ALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+P+++ DEPT+ LD + V+ +++ LA E ++ H+
Sbjct: 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 67.0 bits (164), Expect = 1e-13
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TLL AL+ + GE+ LNG P++ ++R + Q L TV
Sbjct: 35 PNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ 93
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA---VQ 116
E +Q M ++ E + + + ++ LSGG+++R+ LA Q
Sbjct: 94 EVVQ-MGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152
Query: 117 L---LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
L + + LF DEPT+ LD ++ + L +QLA E V+ +H
Sbjct: 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLH 199
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 66.3 bits (162), Expect = 1e-13
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-------TVMSRISGYVAQQDFLIEEL 56
SG+GK+TLLA L G GE+ L G P+ + + ++ G+V Q LI L
Sbjct: 45 SGSGKSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
LE+++ A L R + + ++E LG+ R + LSGG+++R+ALA
Sbjct: 104 NALENVELPALL---RGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
P +LF DEPT LD + + + +LL L
Sbjct: 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 66.6 bits (163), Expect = 1e-13
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVL 59
PSG+GKTT + +N+ ++ GEI ++G I + R GYV QQ L +TV
Sbjct: 35 PSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVME-----NLGINHRRQVQISGLSGGQRKRLALA 114
E++ + KL W + K R E L LSGGQ++R+ +A
Sbjct: 94 ENIALVPKLL-----KWPK-EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147
Query: 115 VQLLTEPQILFCDEPTTGLD 134
L +P +L DEP LD
Sbjct: 148 RALAADPPLLLMDEPFGALD 167
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 67.7 bits (166), Expect = 2e-13
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 37/157 (23%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL-- 62
GAGK+TLL L ++ GE+ + + R+ GY++Q+ L E TVL+++
Sbjct: 39 GAGKSTLLKILAGELEP-DSGEV-----TRPKGL--RV-GYLSQEPPLDPEKTVLDYVIE 89
Query: 63 -------------QFMAKLTMDRRTTWLELNKT------------ITRVMENLGINHRRQ 97
+ A L EL + LG +
Sbjct: 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149
Query: 98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
+S LSGG R+R+ALA LL EP +L DEPT LD
Sbjct: 150 -PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Score = 67.3 bits (165), Expect = 2e-13
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-QDFLIEELTVLEH 61
P+GAGK+TLL L + L G + + TV GY Q +D L + TVLE
Sbjct: 356 PNGAGKSTLLKLLAGELGPL-SGTVK-----VGETVKI---GYFDQHRDELDPDKTVLEE 406
Query: 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRKRLALAVQLLTE 120
L + E + + + G Q + + LSGG++ RL LA LL
Sbjct: 407 L-------SEGFPDGDE--QEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457
Query: 121 PQILFCDEPTTGLD 134
P +L DEPT LD
Sbjct: 458 PNLLLLDEPTNHLD 471
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 66.4 bits (162), Expect = 2e-13
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
PSGAGK+TL+ +N R+ +G IL++G I + R G V QQ L E TV
Sbjct: 37 PSGAGKSTLIKLIN-RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVK 94
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALAVQLL 118
+++++ L ++ N + + +G+N + LSGG+ +R+++A L
Sbjct: 95 DNIEYGPMLKGEK-------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA 147
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
P++L DEPT+ LD S + L+ +L + + + I
Sbjct: 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 66.5 bits (162), Expect = 2e-13
Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 1 MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISR-----TVMSRISGYVAQQDF 51
+ PSG GKTTLL ++N+ + G V+G+I G I T + G V Q+
Sbjct: 35 IGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQ 107
+++ +++ F ++ + +L++ + ++ + + LSGGQ
Sbjct: 95 PFP-MSIYDNVAFGPRIHGVKSKH--KLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVF 167
++RL +A L EP+++ DEPT+ LD + + LL++L+ IVI +
Sbjct: 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI--VTHNIGQAI 209
Query: 168 EKFDTVSLLAHGGLLAYHGQVSKVLK 193
D ++ + G L+ Y G ++++
Sbjct: 210 RIADYIAFMYRGELIEY-GPTREIVE 234
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 66.8 bits (163), Expect = 2e-13
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI---SRTVMSRISGYVAQQDFLIE 54
+ P+GAGKTT L + + GL G I L G P+ +R R+ G V Q D L
Sbjct: 39 LGPNGAGKTTTL----RMLLGLTHPDAGSISLCGEPVPSRARHARQRV-GVVPQFDNLDP 93
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
+ TV E+L + + + ++E + ++ ++ LSGG ++RL LA
Sbjct: 94 DFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLA 150
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
L+ +P +L DEPTTGLD + + + L+ L + ++ H
Sbjct: 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 67.2 bits (165), Expect = 2e-13
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRIS---GYVA---QQDFLIEELT 57
GAG+T L AL + GEILL+G P+ R+ I YV + + L+ +++
Sbjct: 295 GAGRTELARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353
Query: 58 VLEHLQFMAKLTMDRRTTWLELN-----KTITRVMENLGIN-HRRQVQISGLSGGQRKRL 111
+ E + ++ R + ++ R + L I + I LSGG ++++
Sbjct: 354 IAE---NITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV 410
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LA L T+P++L DEPT G+D + + L+++LA E + ++
Sbjct: 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
Score = 63.7 bits (156), Expect = 4e-12
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNG--CPISRTVMSRISG-YVAQQDF-LIEELT 57
GAGK+TL+ L+ G+ GEIL++G S + +G Q+ L+ L+
Sbjct: 44 GAGKSTLMKILS----GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS 99
Query: 58 VLE-----HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
V E +DR+ + + ++ LG++ + LS QR+ +
Sbjct: 100 VAENIFLGREPTRRFGLIDRK----AMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE 155
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+A L + ++L DEPT L + +L+++L
Sbjct: 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 65.3 bits (160), Expect = 3e-13
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
PSG GKTTLL + + G GEILL+G I+ R V Q L LTV
Sbjct: 34 PSGCGKTTLL----RLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E++ F +L ++ E+ + + ++ + + + S LSGGQ++R+A+A L+
Sbjct: 90 FENIAFGLRL---KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV 146
Query: 119 TEPQILFCDEPTTGLD 134
EP++L DEP LD
Sbjct: 147 NEPKVLLLDEPLGALD 162
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 66.6 bits (162), Expect = 4e-13
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 23/205 (11%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ-----GEILLNGCPISRTV-MSRISGYVAQQDFLIE 54
+ SG GKTTLL A + G V+ G I + ++ R + Q L
Sbjct: 37 IGKSGCGKTTLLRA----IAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFP 92
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN---HRRQVQISGLSGGQRKRL 111
L V +++ F + ++ ++ + + ++ +G+ Q LSGG ++R+
Sbjct: 93 HLKVEDNVAFGLRA---QKMPKADIAERVADALKLVGLGDAAAHLPAQ---LSGGMQQRI 146
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAIHQPTSGVFEK 169
A+A + EP +L DEP + LD+ N+ + L E ++C H +
Sbjct: 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA 206
Query: 170 FDTVSLLAHGGLLAYHGQVSKVLKH 194
D ++ G L A HG+ +
Sbjct: 207 -DKAGIMKDGRLAA-HGEPQALYDA 229
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 66.6 bits (163), Expect = 4e-13
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 19/202 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--RTVMSRISGYVAQQDFLIEELTVLE 60
SG+GK+TLL L QG I LNG I+ R + V Q + T+ +
Sbjct: 372 RSGSGKSTLLQLL-AGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD 430
Query: 61 HLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQL 117
+L+ A W L + + +++E+ + G LSGG+R+RLALA L
Sbjct: 431 NLRL-ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL- 176
L + + DEPT GLD + V+ LL + A E + ++ H+ E+ D + +L
Sbjct: 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDRIIVLD 546
Query: 177 --------AHGGLLAYHGQVSK 190
H LLA +G+ +
Sbjct: 547 NGKIIEEGTHAELLANNGRYKR 568
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 65.0 bits (159), Expect = 5e-13
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGC-PISRTVMSRIS----GYVAQQDFLIEELT 57
P+GAGKTTL+ + + + +GE+L +G +++ RI+ G Q+ + E LT
Sbjct: 39 PNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLT 97
Query: 58 VLEHLQFMAKLTMDRRTTWL---------ELNKTITRVMENLGINHRRQVQISGLSGGQR 108
V E+L+ L ++R + E + I ++ +G+ R + LS GQ+
Sbjct: 98 VRENLE----LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
+ L + + L +P++L DEP G+ LLK LA ++ H G
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHD--MGFVR 210
Query: 169 KF-DTVSLLAHGGLLA 183
+ D V++L G +LA
Sbjct: 211 EIADKVTVLHEGSVLA 226
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 64.6 bits (158), Expect = 5e-13
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 3 PSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
PSG GKTT L A L + G + G + P R V Q L +TV
Sbjct: 34 PSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD----RDIAMVFQNYALYPHMTV 89
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
+++ F KL R+ E+++ + V E L I H + LSGGQR+R+AL ++
Sbjct: 90 YDNIAFGLKL---RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV 146
Query: 119 TEPQILFCDEPTTGLD 134
EP++ DEP + LD
Sbjct: 147 REPKVFLMDEPLSNLD 162
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 64.4 bits (158), Expect = 5e-13
Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS--RTVMSRISGYVAQQDFLIEELT 57
P+GAGKT+LL L GL + GE+L G PI R + Y+ Q + ELT
Sbjct: 35 PNGAGKTSLLRIL----AGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90
Query: 58 VLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
LE+L+F +L D W L + +G+ V + LS GQ++R+ALA
Sbjct: 91 ALENLRFYQRLHGPGDDEALWEALAQ--------VGLAGFEDVPVRQLSAGQQRRVALAR 142
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LT + DEP T +D + LL Q A + +VI HQ
Sbjct: 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 64.6 bits (157), Expect = 8e-13
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPI----SRTVMSRISGYVAQQ-----DF 51
+ P+G GK+TLL L+ R+ G + L+G I S+ V RI G +AQ D
Sbjct: 39 IGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASKEVARRI-GLLAQNATTPGDI 96
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
++EL T R+ E + +T+ M+ GI H + LSGGQR+R
Sbjct: 97 TVQELVARGRYPHQPLFTRWRK----EDEEAVTKAMQATGITHLADQSVDTLSGGQRQRA 152
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
+A+ L E I+ DEPTT LD +++ LL +L E + A+
Sbjct: 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV 200
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 64.2 bits (157), Expect = 9e-13
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISR---TVMSRISGYVAQQDFLIEELT 57
P+GAGK+TLLA + GL+ G I G P+ ++R Y++QQ +
Sbjct: 30 PNGAGKSTLLARM----AGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMP 85
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG--QRKRLALAV 115
V ++L L +T + + V E LG++ + ++ LSGG QR RLA AV
Sbjct: 86 VFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLA-AV 140
Query: 116 QLLTEPQI------LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
L P I L DEP LD + LL +L + V+ + H +
Sbjct: 141 VLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD-LNHTLRH 199
Query: 170 FDTVSLLAHGGLLAYHGQVSKVLK 193
D V LL G LLA G+ +VL
Sbjct: 200 ADRVWLLKQGKLLAS-GRRDEVLT 222
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 63.0 bits (154), Expect = 1e-12
Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 57/187 (30%)
Query: 3 PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMSRIS---GYVAQQDFLIEEL 56
PSG+GK+TL + + GL G + L+G IS+ + + GY+ Q D L
Sbjct: 36 PSGSGKSTLA----RLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL---- 87
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+ +I EN+ LSGGQR+RL LA
Sbjct: 88 ----------------------FSGSI---AENI------------LSGGQRQRLGLARA 110
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQL--ACESRIVICAIHQPTSGVFEKFDTVS 174
L P+IL DEP + LD + + L A +RIVI H+P D +
Sbjct: 111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA--HRPE--TLASADRIL 166
Query: 175 LLAHGGL 181
+L G +
Sbjct: 167 VLEDGRV 173
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 64.9 bits (158), Expect = 1e-12
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
M SG+GK+T + LN+ ++ G+I ++G I R V + G V QQ L
Sbjct: 25 MGLSGSGKSTTVRMLNRLIEP-TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 54 EELTVLEHLQFMAKL----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+T+L++ +L +R+ LEL K + +E HR + LSGG ++
Sbjct: 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVG--LEEYE--HRYPDE---LSGGMQQ 136
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
R+ LA L EP IL DE + LD +++ + LK+L
Sbjct: 137 RVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 63.9 bits (156), Expect = 1e-12
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 24/173 (13%)
Query: 1 MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPI-----SRTVMSRISGYVAQQ-- 49
+ PSG GK+TLL +LN+ V G+ ++G++L +G I + R G V Q+
Sbjct: 33 IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92
Query: 50 DFLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGL 103
F +++ +++ + +L D++ EL++ + ++ + R GL
Sbjct: 93 PFP---MSIYDNIAYGPRLHGIKDKK----ELDEIVEESLKKAALWDEVKDRLHDSALGL 145
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
SGGQ++RL +A L EP++L DEPT+ LD + + L+++L + IVI
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVI 198
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 63.6 bits (155), Expect = 2e-12
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
+ PSG GKTTLL + G V G I L+G P+ R G V Q + L+
Sbjct: 33 LGPSGCGKTTLL----NLIAGFVPYQHGSITLDGKPVEGPGAER--GVVFQNEGLLPWRN 86
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V +++ F +L + LE+ + + + G R Q LSGGQR+R+ +A L
Sbjct: 87 VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ---LSGGQRQRVGIARAL 143
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFDTVSLL 176
PQ+L DEP LD+++ + LL +L E+ + V+ H VF + V LL
Sbjct: 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV-LL 202
Query: 177 AHG 179
+ G
Sbjct: 203 SPG 205
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 64.5 bits (158), Expect = 2e-12
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMS---RISGYVAQQDFLIEELT 57
PSGAGKT+LL AL G + QG + +NG + + +V Q L T
Sbjct: 384 PSGAGKTSLLNAL----LGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-T 438
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKT-ITRVMENL--GINHRRQVQISGLSGGQRKRLALA 114
+ +++ + L ++ + L G++ Q +GLS GQ +RLALA
Sbjct: 439 LRDNV-LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
LL Q+L DEPT LD++S V+ L +
Sbjct: 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS 532
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 63.3 bits (154), Expect = 2e-12
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 1 MSPSGAGKTTLLAALNK-RVKGLVQGEILLNGCPISRTV-------MSRISGYVAQQDFL 52
+ PSGAGK++LL LN + I N S+T + R G V QQ L
Sbjct: 34 LGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL 93
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-----LSGGQ 107
LTV E+L + R L ++ + R + L R + LSGGQ
Sbjct: 94 WPHLTVQENL-----IEAPCRVLGLSKDQALARAEKLL--KRLRLKPYADRYPLHLSGGQ 146
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
++R+A+A L+ EPQ+L DEPT LD +V+++K+LA
Sbjct: 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 64.1 bits (156), Expect = 2e-12
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-RTVMSRISGYVAQQDFLIEEL 56
+ PSG GKTTLL L G Q G I+L+G ++ R V Q L +
Sbjct: 2 LGPSGCGKTTLLRLL----AGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTIT-RVMENLGINH---RRQVQISGLSGGQRKRLA 112
TV E++ F L M + I RV+E L + + LSGGQ++R+A
Sbjct: 58 TVEENVAF--GLKMRK-----VPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVA 110
Query: 113 LAVQLLTEPQILFCDEPTTGLD 134
LA L+ +P+IL DEP + LD
Sbjct: 111 LARALVFKPKILLLDEPLSALD 132
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 63.1 bits (153), Expect = 3e-12
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRT-------VMSRI-SGYVAQQD 50
+ PSG+GK+TLL L+ + G I L G + R SR +GY+ QQ
Sbjct: 36 LGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95
Query: 51 FLIEELTVLEHLQFMA-KLTMDRRT--TWL--ELNKTITRVMENLGINHRRQVQISGLSG 105
L+ L+VLE++ A T RT +W E + + + +G+ H ++S LSG
Sbjct: 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQ 161
GQ++R+A+A L+ + +++ DEP LD SA V++ L+ + I V+ +HQ
Sbjct: 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 62.6 bits (152), Expect = 4e-12
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 1 MSPSGAGKTTLLAALNKRV----KGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLI 53
M PSG+GK+TLL N+ + + V GE+ L+G I + + R V Q I
Sbjct: 35 MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQRK 109
L++ E++ KL ++ EL + + +E + R LSGGQ++
Sbjct: 95 PNLSIFENVALGLKLNRLVKSK-KELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
RL +A L +P++L DEPT LD + + +L +L + IV+
Sbjct: 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVL 200
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 62.4 bits (152), Expect = 5e-12
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 17/173 (9%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL-----TV 58
SG+GK+T L +N ++ G I +NG I R + ++ L V
Sbjct: 41 SGSGKSTFLRCIN-FLEKPSAGSIRVNGEEI-RLKRDKDGQLKPADKRQLQRLRTRLGMV 98
Query: 59 LEHLQFMAKLT-----MDRRTTWLELNK--TITRVMENL---GINHRRQVQISGLSGGQR 108
+H + +T ++ L ++K I R + L GI + + LSGGQ+
Sbjct: 99 FQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+R+A+A L EP+++ DEPT+ LD V+ +++ LA E R ++ H+
Sbjct: 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 62.3 bits (152), Expect = 6e-12
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 13/161 (8%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLI---EELTVL 59
GAGK+TLL A+ +K G+IL++G +++ +++ + +A+ QD L ELT+
Sbjct: 42 GAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIE 100
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVME------NLGINHRRQVQISGLSGGQRKRLAL 113
E+L +A+ +R LN+ LG+ +R +I LSGGQR+ L+L
Sbjct: 101 ENL-ALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
+ L P+IL DE T LD +A V+ L ++ E ++
Sbjct: 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 61.8 bits (150), Expect = 6e-12
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMS-RISGYVAQQDFLIEEL 56
M PSGAGK+TLL + G G I +N + R + Q++ L L
Sbjct: 30 MGPSGAGKSTLLNL----IAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV +++ + + + K + + +GI LSGGQR+R+ALA
Sbjct: 86 TVRQNIGLGLHPGL--KLNAEQQEK-VVDAAQQVGIADYLDRLPEQLSGGQRQRVALARC 142
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQPT 163
L+ IL DEP + LD ++ L+KQL E R ++ H +
Sbjct: 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 61.4 bits (149), Expect = 6e-12
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 1 MSPSGAGKTTLLAALNKRVKG--LVQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELT 57
M PSG GK+TLL+ + + G GE+ LN + R G + Q L L+
Sbjct: 34 MGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V ++L F T+ N + R + G H+ LSGGQR R+AL L
Sbjct: 94 VGQNLLFALPATLKGNARRNAANAALERSGLD-GAFHQDPAT---LSGGQRARVALLRAL 149
Query: 118 LTEPQILFCDEPTTGLD 134
L +P+ L DEP + LD
Sbjct: 150 LAQPKALLLDEPFSRLD 166
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 62.7 bits (153), Expect = 7e-12
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 3 PSGAGKTTLL---AALNKRVKG-LVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
PSG GK+TLL A L G L GE +N P + R G V Q L L+V
Sbjct: 37 PSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLSV 92
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E++ F KL ++ E+N+ + +V E L + H + LSGGQR+R+A+ L+
Sbjct: 93 AENMSFGLKLAGAKKE---EINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 119 TEPQILFCDEPTTGLDS 135
EP + DEP + LD+
Sbjct: 150 AEPSVFLLDEPLSNLDA 166
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 62.1 bits (151), Expect = 7e-12
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 3 PSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-SRTV----MSRISGYVAQQDFL 52
PSG GK+T L LN R+ L V+GEILL+G I V + R G V Q+
Sbjct: 40 PSGCGKSTFLRCLN-RMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL-------GINHRRQVQISGLSG 105
+ ++ E++ + ++ + +L RV +L + R GLSG
Sbjct: 99 FPK-SIFENVAYGLRVNGVKDKAYLA-----ERVERSLRHAALWDEVKDRLHESALGLSG 152
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GQ++RL +A L EP++L DEP + LD + + L+ +L I+I
Sbjct: 153 GQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 62.4 bits (152), Expect = 7e-12
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 8/198 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNG-CPISR--TVMSRISGYVAQQDFLIEELTVL 59
+GAGK+T L L + G++ +NG P R + I + Q+ L +L L
Sbjct: 58 ANGAGKSTTLKMLTGLLLPT-SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+ L+ + + E + + + E L + + + LS GQR R LA LL
Sbjct: 117 DSLEVLKLI---YEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLH 173
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHG 179
P++LF DEPT GLD + N+ LK+ E + + + D V LL
Sbjct: 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV-LLIDQ 232
Query: 180 GLLAYHGQVSKVLKHFAK 197
G L + G ++++ + F
Sbjct: 233 GQLVFDGTLAQLQEQFGP 250
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 62.8 bits (153), Expect = 9e-12
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 23/173 (13%)
Query: 4 SGAGKTTL---LAALNK------RVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIE 54
SG+GK+TL L L+K RV G Q L+ +++ G++ Q+ L+
Sbjct: 43 SGSGKSTLMNILGCLDKPTSGTYRVAG--QDVATLDADALAQLRREHF-GFIFQRYHLLS 99
Query: 55 ELTVLEHLQFMA----KLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
LT ++++ A R EL + R LG+ R + Q S LSGGQ++R
Sbjct: 100 HLTAAQNVEVPAVYAGLERKQRLLRAQEL---LQR----LGLEDRVEYQPSQLSGGQQQR 152
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
+++A L+ Q++ DEPT LDS+S V+ +L QL VI H P
Sbjct: 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 61.4 bits (150), Expect = 1e-11
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELTV 58
P+GAGKTT++ + + + +G +L G ++ +I+ G Q+ + E LTV
Sbjct: 36 PNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94
Query: 59 LEHLQFMAK-------LTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
E+L+ R + E I V+E +G+ LS GQ++ L
Sbjct: 95 FENLELALPRDKSVFASLFFRLSA--EEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVI 156
+ + L+ +P++L DEP G+ LLK LA + S +V+
Sbjct: 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVV 198
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 61.2 bits (149), Expect = 1e-11
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 26/172 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD-- 50
PSG GK+T L LN R+ L+ +GE+LL+G I ++ + G V QQ
Sbjct: 37 PSGCGKSTFLRTLN-RMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95
Query: 51 FLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGLS 104
F +++ +++ + + D++ +L++ + + ++ + R + GLS
Sbjct: 96 F---PMSIYDNVAYGPRTHGIKDKK----KLDEIVEKSLKGAALWDEVKDRLKKSALGLS 148
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GGQ++RL +A L EP++L DEPT+ LD S + L+++L + IVI
Sbjct: 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVI 200
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 61.1 bits (148), Expect = 1e-11
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 18/191 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS----RTVMSRISGYVAQQDFLI 53
+ P+GAGKTT V G+V G I+++ IS R GY+ Q+ +
Sbjct: 35 LGPNGAGKTTTFYM----VVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIF 90
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
L+V ++L MA L + + + +ME I H R LSGG+R+R+ +
Sbjct: 91 RRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEI 148
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH--QPTSGVFEKFD 171
A L P+ + DEP G+D S ++ +++ L V+ H + T V E+
Sbjct: 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY 208
Query: 172 TVS---LLAHG 179
VS L+AHG
Sbjct: 209 IVSQGHLIAHG 219
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 61.6 bits (150), Expect = 2e-11
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
PSG GKTTLL + GL G I G I+R R G V Q L LTV
Sbjct: 38 PSGCGKTTLLRII----AGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
+++ + K +R E+ + + +++ +G+ + LSGGQ++R+ALA L
Sbjct: 94 ADNIAYGLK---NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA 150
Query: 119 TEPQILFCDEPTTGLD 134
T P +L DEP + LD
Sbjct: 151 TSPGLLLLDEPLSALD 166
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 60.5 bits (147), Expect = 2e-11
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 3 PSGAGKTTLLAALN---KRVKGLVQ-GEILLNGC-PIS------RTVMSRISGYVAQQDF 51
PSG+GKTTLL +N + G ++ G+I ++ +S R + + G+V Q
Sbjct: 37 PSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV-GFVFQNFN 95
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
L TVLE++ + + + E ++ +G+ + LSGGQ++R+
Sbjct: 96 LFPHRTVLENI--IEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
A+A L P+++ DEPT+ LD V+N ++QLA E R ++ H+
Sbjct: 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 61.2 bits (149), Expect = 2e-11
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNG---CPIS----RTVMSRISGYVAQQDFLI 53
M SG+GK+TL+ LN+ ++ +GEIL++G +S R + + V Q L+
Sbjct: 60 MGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118
Query: 54 EELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
TVLE++ F ++ + + E + +E +G+ + LSGG ++R+
Sbjct: 119 PHRTVLENVAFGLEVQGVPKA----EREERALEALELVGLEGYADKYPNELSGGMQQRVG 174
Query: 113 LAVQLLTEPQILFCDEPTTGLD 134
LA L +P IL DE + LD
Sbjct: 175 LARALANDPDILLMDEAFSALD 196
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 61.3 bits (149), Expect = 2e-11
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 22/194 (11%)
Query: 2 SPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELT 57
PSG+GK+TL+ L R+ GEIL++G I ++ RI G V+Q L T
Sbjct: 362 GPSGSGKSTLIKLLL-RLYDPTSGEILIDGIDIRDISLDSLRKRI-GIVSQDPLLFSG-T 418
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVM-----ENL--GINHRRQVQISGLSGGQRKR 110
+ E++ D E+ + + NL G + + LSGGQR+R
Sbjct: 419 IRENIALGRPDATDE-----EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
LA+A LL P IL DE T+ LD+ + + + LK+L + R + H+ ++ +
Sbjct: 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNA 530
Query: 171 DTVSLLAHGGLLAY 184
D + +L +G ++
Sbjct: 531 DRIIVLDNGRIVER 544
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 60.4 bits (146), Expect = 2e-11
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA---QQDFLIEELT-VL 59
SG+GK+T L +N K +G I++NG I+ VA Q L LT V
Sbjct: 40 SGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98
Query: 60 EHLQFMAKLT-----MDRRTTWLELNKTITR-----VMENLGINHRRQVQI-SGLSGGQR 108
+H + +T M+ L L+K R + +GI+ R Q + LSGGQ+
Sbjct: 99 QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQ 158
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+R+++A L EP++L DEPT+ LD V+ +++QLA E + ++ H+
Sbjct: 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 60.6 bits (147), Expect = 3e-11
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
GLSGGQ++R+A+A L +P+IL DEPT GLD + ++ L+ ++ V H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 162 PTSGVFEKFDTVSLLAHGGLL 182
V E D V ++ G +L
Sbjct: 236 -MEHVLEVADEVIVMDKGKIL 255
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 60.7 bits (148), Expect = 4e-11
Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 20/202 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-RTVMSRISGYVA---QQDFLI 53
M +GAGK+TLL L+ G Q G IL++G + + + ++ VA Q+ L+
Sbjct: 36 MGENGAGKSTLLKILS----GNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLV 91
Query: 54 EELTVLEHL---QFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
E+TV E+L Q K + +RR LN +E+LG++ + LS GQR+
Sbjct: 92 PEMTVAENLYLGQLPHKGGIVNRRL----LNYEAREQLEHLGVDIDPDTPLKYLSIGQRQ 147
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
+ +A L +++ DEPT+ L + + ++++L E R+++ H+ +F
Sbjct: 148 MVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR-MEEIFAL 206
Query: 170 FDTVSLLAHGGLLAYHGQVSKV 191
D +++ G +A +++V
Sbjct: 207 CDAITVFKDGRYVATFDDMAQV 228
Score = 34.5 bits (80), Expect = 0.026
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 94 HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
R Q I LSGG +++ L L + +++ DEPT G+D + + + N++ +LA +
Sbjct: 389 SREQ-LIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV 447
Query: 154 IVI 156
V+
Sbjct: 448 AVL 450
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 59.6 bits (145), Expect = 6e-11
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 3 PSGAGKTTLLAALNK---RVKGLVQ--GEILLNGCPISRTVMSRISGYVA---QQDFLIE 54
P+GAGKTTLL+ L G V G G + RI G V+ + F +
Sbjct: 65 PNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG-ETIFELRKRI-GLVSSELHERFRVR 122
Query: 55 ELTVLEHL--QFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
E TV + + F A + + T +L ++E LG H LS G+++R+
Sbjct: 123 E-TVRDVVLSGFFASIGIYQEDLTAEDLAAAQW-LLELLGAKHLADRPFGSLSQGEQRRV 180
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
+A L+ +P++L DEP GLD + ++N L++LA
Sbjct: 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 60.0 bits (146), Expect = 6e-11
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 27/144 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
PSG GKTT+L + + G G I+L+G I+ +R V Q L +TV
Sbjct: 48 PSGCGKTTVL----RLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQRKR 110
E++ F ++ ++T E+ RVME L R VQ+ LSGGQ++R
Sbjct: 104 FENVAFGLRM---QKTPAAEIT---PRVMEAL-----RMVQLEEFAQRKPHQLSGGQQQR 152
Query: 111 LALAVQLLTEPQILFCDEPTTGLD 134
+A+A ++ +P++L DE + LD
Sbjct: 153 VAIARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 60.3 bits (147), Expect = 7e-11
Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 31/171 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGC---PISRTVMSRISGYVAQQDFLIEEL 56
G+GK+TLL K + GL Q G +LL+G I + R GYV Q L
Sbjct: 499 RIGSGKSTLL----KLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQ---VQIS----GLSG 105
T+ +++ A D I R E G + +QI LSG
Sbjct: 554 TLRDNIALGAPYADDEE---------ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GQR+ +ALA LL +P IL DEPT+ +D+ S + LK+ +V+
Sbjct: 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVL 655
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 59.1 bits (143), Expect = 7e-11
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 19/202 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI---SRTVMSRISGYVAQQDFLIE 54
+ P+G+GK+TLL + + G + G + L G + SR +R V Q
Sbjct: 33 LGPNGSGKSTLL----RLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV 88
Query: 55 ELTVLEHLQFMAKLTMDRRTTW----LELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
LTV + +A + R+ W + R + ++H +S LSGG+R+R
Sbjct: 89 PLTVRD---VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQR 145
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF 170
+ +A L EP++L DEPT LD + + L+++LA V+ A+H
Sbjct: 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA-SYC 204
Query: 171 DTVSLLAHGGLLAYHGQVSKVL 192
D V +L G ++A G +VL
Sbjct: 205 DHVVVLDGGRVVA-AGPPREVL 225
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 59.3 bits (144), Expect = 7e-11
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
Query: 3 PSGAGKTTLLAALNKRVK----GLVQGEILLN-----GCPISRTVMSRISGYVAQQDFLI 53
PSG GK+T+L LN+ + V+GE+LL+ G + + R G V Q+
Sbjct: 38 PSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI------SGLSGGQ 107
+++ +++ +A L ++ +L++ + + + G N +V+ GLSGGQ
Sbjct: 98 PTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLR--GANLWNEVKDRLDKPGGGLSGGQ 153
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
++RL +A + EP +L DEP + LD S + +L+ +L + IVI
Sbjct: 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVI 202
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 58.9 bits (143), Expect = 1e-10
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
LSGGQ++R+ALA L EP L DEPT GLD ++ + L + + +I H
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 58.4 bits (142), Expect = 1e-10
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRISGYVAQQD 50
M SG+GK+TLL +N L++ G++L++G I+ R + + V Q
Sbjct: 56 MGLSGSGKSTLLRCIN----RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111
Query: 51 FLIEELTVLEH------LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
L+ TVLE+ +Q + + + R +E +G+ LS
Sbjct: 112 ALLPHRTVLENVAFGLEVQGVPRAEREERAA---------EALELVGLEGWEHKYPDELS 162
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GG ++R+ LA L +P IL DE + LD + + L +L E + I
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 57.9 bits (141), Expect = 1e-10
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-----VMSRISGYVAQQDFLIEEL 56
G GKTTLL L GL+ G I L+G I++ + I YV Q + L
Sbjct: 36 GVGKTTLLKTL----MGLLPVKSGSIRLDGEDITKLPPHERARAGI-AYVPQGREIFPRL 90
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAV 115
TV E+L R + + V++ + RR G LSGGQ+++LA+A
Sbjct: 91 TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM--LGRR----GGDLSGGQQQQLAIAR 144
Query: 116 QLLTEPQILFCDEPTTG 132
L+T P++L DEPT G
Sbjct: 145 ALVTRPKLLLLDEPTEG 161
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 58.5 bits (142), Expect = 1e-10
Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 27/205 (13%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS--RTVMSRIS---GYVAQ--QDFLI 53
+G+GK+TL+ LN GL++ G+I+++G I+ + +S I G V Q + L
Sbjct: 42 TGSGKSTLIQHLN----GLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97
Query: 54 EELTVLEHLQFMAK---LTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--GLSGGQR 108
EE T+ + + F L+ + E+ + R M +G+++ S LSGGQ+
Sbjct: 98 EE-TIEKDIAFGPINLGLSEE------EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQK 150
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
+R+A+A + EP+IL DEPT GLD + ++N +K+L E + I + V +
Sbjct: 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK 210
Query: 169 KFDTVSLLAHGGLLAYHGQVSKVLK 193
D + ++ + G G +V K
Sbjct: 211 LADRI-IVMNKGKCELQGTPREVFK 234
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 59.1 bits (144), Expect = 1e-10
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 37/199 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLIEE 55
+G GK+TLL L R QGEILLNG PI+ R +S +S Q +
Sbjct: 374 RTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSEAALRQAISVVS-----QRVHLFS 427
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRV-MENL-----GINH-----RRQVQISGLS 104
T+ ++L A D L + + +V +E L G+N RQ LS
Sbjct: 428 ATLRDNLLLAAPNASDE-----ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ-----LS 477
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
GG+++RL +A LL + +L DEPT GLD+ + ++ LL + +++ V+ H+ T
Sbjct: 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTG 536
Query: 165 GVFEKFDTVSLLAHGGLLA 183
E+FD + ++ +G ++
Sbjct: 537 --LEQFDRICVMDNGQIIE 553
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 58.1 bits (141), Expect = 2e-10
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 32/166 (19%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQG------EILLNGCPISRTV-------MSRISGYVAQQ 49
PSGAGK++LL LN L++ I N S+T + R G V QQ
Sbjct: 36 PSGAGKSSLLRVLN-----LLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 50 DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL------GINHRRQVQISGL 103
L LTV ++L + R L ++ + R + L R + L
Sbjct: 91 YNLWPHLTVQQNL-----IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH---L 142
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
SGGQ++R+A+A L+ EPQ+L DEPT LD +V+++++LA
Sbjct: 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA 188
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 59.0 bits (143), Expect = 2e-10
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 33 PISRTVMSRISGYVAQQDF-LIEELTVLEH-------LQFMAKLTMDRRTTWLELNKTIT 84
+ R + RI+ + Q+ F L + TVL++ + + K + R +E
Sbjct: 102 KLRRRIRKRIA-IMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE------ 154
Query: 85 RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
M L HR LSGG+++R+ LA QL EP + DEPT LD +A V N
Sbjct: 155 --MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210
Query: 145 LKQLACESRI-VICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
L++ S I ++ H P V E ++ G + G +V+ F
Sbjct: 211 LEEAVKASGISMVLTSHWPE--VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
Score = 48.6 bits (116), Expect = 6e-07
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 4 SGAGKTTL---LAALNKRVKGLVQGEI------LLNGCPISRTVMSRISGYVAQQDFLIE 54
SGAGKTTL +A + + G V + + P R R G + Q+ L
Sbjct: 319 SGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITR-----VMENLGINHRRQVQI-----SGLS 104
TVL++L LEL + R ++ +G + + +I LS
Sbjct: 379 HRTVLDNLT---------EAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN 143
G+R R+ALA L+ EP+I+ DEPT +D + +V +
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 58.1 bits (141), Expect = 2e-10
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI--SRTVMSRIS---GYVAQQ--D 50
PSG GK+TLL N R+ L +GEILL+G I + ++ + G V Q+
Sbjct: 47 PSGCGKSTLLRTFN-RMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105
Query: 51 FLIEELTVLEHLQF-------MAKLTMDRRTTWLELNKTI--TRVMENLGINHRRQVQIS 101
F +++ +++ F +++ MD R W L K V + L +
Sbjct: 106 F---PMSIYDNIAFGVRLFEKLSRAEMDERVEW-ALTKAALWNEVKDKLHQSG------Y 155
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGGQ++RL +A + P++L DEP + LD S + L+ +L + +VI
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVI 210
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 58.2 bits (141), Expect = 2e-10
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVA--------QQ 49
M PSG GKTTLL + + G + GEIL +G I MSR Y Q
Sbjct: 39 MGPSGIGKTTLL----RLIGGQIAPDHGEILFDGENIP--AMSRSRLYTVRKRMSMLFQS 92
Query: 50 DFLIEELTVLEHLQFMAKLTMDRRTTWLE---LNKTITRVMENLGINHRRQVQISGLSGG 106
L ++ V +++ + R T L L+ T+ +E +G+ ++ S LSGG
Sbjct: 93 GALFTDMNVFDNVAYPL-----REHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGG 147
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+R ALA + EP ++ DEP G D + +V L+ +L
Sbjct: 148 MARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISEL 189
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 57.7 bits (140), Expect = 2e-10
Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 22/201 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMS-RISGYVAQQDFLIEEL 56
+ PSGAGK+TLL + G GEIL+NG + + + R + Q++ L L
Sbjct: 31 LGPSGAGKSTLLNL----IAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHL 86
Query: 57 TVLEHLQF----MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
TV +++ KL ++R + + +G+ + LSGGQR+R+A
Sbjct: 87 TVAQNIGLGLSPGLKLNAEQR-------EKVEAAAAQVGLAGFLKRLPGELSGGQRQRVA 139
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFD 171
LA L+ E IL DEP + LD ++ L+ QL E ++ H P D
Sbjct: 140 LARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIAD 198
Query: 172 TVSLLAHGGLLAYHGQVSKVL 192
V L +G +A G ++L
Sbjct: 199 RVVFLDNGR-IAAQGSTQELL 218
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 57.6 bits (140), Expect = 2e-10
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-----GYVAQQDFLIEELT 57
P+GAGKTTL+ L R +G+IL++G I +SR S G V Q FL T
Sbjct: 37 PTGAGKTTLINLLM-RFYDPQKGQILIDGIDIRD--ISRKSLRSMIGVVLQDTFLFSG-T 92
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKT--ITRVMENL--GINHRRQVQISGLSGGQRKRLAL 113
++E+++ + + +E K + L G + LS G+R+ LA+
Sbjct: 93 IMENIR-LGRPNATD-EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
A +L +P+IL DE T+ +D+ + + L++L
Sbjct: 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKL 185
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 58.5 bits (142), Expect = 3e-10
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+ LSGGQR+R+ALA L +P+++ DEP + LD + N +K L V+ H
Sbjct: 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512
Query: 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
+P + D + +L G + + G+ +VL
Sbjct: 513 RP--SLLGCVDKILVLQDGRIARF-GERDEVLAKL 544
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 57.5 bits (139), Expect = 3e-10
Identities = 60/201 (29%), Positives = 85/201 (42%), Gaps = 24/201 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TLLA + G G I G P+ T ++R Y++QQ + V
Sbjct: 33 PNGAGKSTLLARMAGMTSG--SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG--QRKRLALAVQL 117
+L L +T LN V L ++ + + LSGG QR RLA AV L
Sbjct: 91 HYLT----LHQPDKTRTELLND----VAGALALDDKLGRSTNQLSGGEWQRVRLA-AVVL 141
Query: 118 LTEP------QILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFD 171
P Q+L DEP LD + + LL L + ++ + H +
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD-LNHTLRHAH 200
Query: 172 TVSLLAHGGLLAYHGQVSKVL 192
LL G LLA G+ +VL
Sbjct: 201 RAWLLKRGKLLA-SGRREEVL 220
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 57.3 bits (139), Expect = 4e-10
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 28/173 (16%)
Query: 3 PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMS-----RISGYVAQQD-- 50
PSG GK+TLL N R+ LV +GEI L+G I + R G V Q+
Sbjct: 59 PSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117
Query: 51 F---LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGL 103
F + E + LQ + +RR L++ + R + + R GL
Sbjct: 118 FPKSIYENVVYGLRLQGIN----NRRV----LDEAVERSLRGAALWDEVKDRLHENAFGL 169
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
SGGQ++RL +A + EP++L DEPT+ LD S + L+ +L + IVI
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVI 222
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 57.3 bits (138), Expect = 4e-10
Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 22/172 (12%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-SRTV----MSRISGYVAQQD 50
+ PSG GK+T L LN R+ L+ +GE+LL+G I + V + + G V Q+
Sbjct: 36 IGPSGCGKSTFLRCLN-RMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94
Query: 51 FLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQIS----GLS 104
+++ +++ + ++ D++ EL+K + ++ + + + LS
Sbjct: 95 NPFP-MSIYDNVAYGPRIHGIKDKK----ELDKIVEWALKKAALWDEVKDDLKKSALKLS 149
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GGQ++RL +A + +P ++ DEPT+ LD S + +L+ +L E IVI
Sbjct: 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVI 201
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 56.7 bits (137), Expect = 4e-10
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 32/175 (18%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNG---CPISRTVMSRISGYVAQQDFLIEELTVLE 60
SG+GK+TL L +R G +L++G + R G V Q++ L ++ +
Sbjct: 37 SGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNR-SIRD 94
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVME--------------NLGINHRRQVQISGLSGG 106
++ +A M RV+E G + Q +GLSGG
Sbjct: 95 NIA-LADPGMSME-----------RVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGG 142
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
QR+R+A+A L+ P+IL DE T+ LD S + ++ + + C R VI H+
Sbjct: 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHR 196
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 56.4 bits (136), Expect = 6e-10
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
+GAGKTTLL L GL+ G+I ++G +R SR Y+ L +L+ L
Sbjct: 45 DNGAGKTTLLRVL----AGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
E+L F+ L R + + +G+ + LS GQ+KRLALA L+
Sbjct: 101 ENLHFLCGLHGRRA------KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS 154
Query: 120 EPQILFCDEPTTGLD 134
+ DEP LD
Sbjct: 155 PAPLWLLDEPYANLD 169
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 56.6 bits (136), Expect = 6e-10
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
E+ + + + + H R I LS GQ+KR+A+A L+ + + L DEPT GLD
Sbjct: 112 EITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
Query: 138 ANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAY 184
++ +++++ + VI + H ++E D V +L G +L +
Sbjct: 172 RTQMIAIIRRIVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTH 217
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 56.4 bits (136), Expect = 8e-10
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-----SRTVMSRISGYVAQQD 50
+ PSG GK+T L A+N R+ L+ G ++ +G I ++ + G V Q+
Sbjct: 71 IGPSGCGKSTFLRAIN-RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 51 FLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
+ ++ +++ + +L D++ + K++ + ++ R GLSGGQ+
Sbjct: 130 NPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+RL +A L EP+IL DEPT+ LD + + +L+++L I+I
Sbjct: 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 55.6 bits (135), Expect = 9e-10
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 50/196 (25%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEI-LLNGCPISRTVMSRISGYVAQQDFLIEELTVLEH 61
P G+GK++LL+AL L GE+ L+G S +V I+ YV+Q+ ++ T+ E+
Sbjct: 39 PVGSGKSSLLSAL------L--GELEKLSG---SVSVPGSIA-YVSQEPWIQNG-TIREN 85
Query: 62 LQFMAKLTMDRRTTWLELNKTI-----------------TRVMENLGINHRRQVQISGLS 104
+ F +R K I T + E GIN LS
Sbjct: 86 ILFGKPFDEER------YEKVIKACALEPDLEILPDGDLTEIGEK-GIN---------LS 129
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVV-NLLKQLACESRIVICAIHQPT 163
GGQ++R++LA + ++ I D+P + +D++ ++ N + L ++ I HQ
Sbjct: 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189
Query: 164 SGVFEKFDTVSLLAHG 179
+ D + +L +G
Sbjct: 190 --LLPHADQIVVLDNG 203
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 56.4 bits (137), Expect = 1e-09
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 23/163 (14%)
Query: 4 SGAGKTTLLAALNKRVKGLV---QGEILLNG-------CPISRTVMSRISGYVAQQDFLI 53
SGAGKT+L+ A + GL +G I+LNG I R GYV Q L
Sbjct: 33 SGAGKTSLINA----ISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
V +L++ +M + +++ LGI LSGG+++R+A+
Sbjct: 89 PHYKVRGNLRYGMAKSMVAQ---------FDKIVALLGIEPLLDRYPGSLSGGEKQRVAI 139
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LLT P++L DEP LD ++ L++LA E I I
Sbjct: 140 GRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 55.8 bits (135), Expect = 1e-09
Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 18/168 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRT---VMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TLL+ ++ R+ GEI ++G ++ T +++ + Q++ + LTV
Sbjct: 35 PNGAGKSTLLSMMS-RLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVR 93
Query: 60 EHLQF------MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
+ + F +LT + R + I +E L + + LSGGQR+R +
Sbjct: 94 DLVGFGRFPYSQGRLTKEDR-------RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFI 146
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIH 160
A+ L + + DEP LD + ++ +L++LA E + ++ +H
Sbjct: 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLH 194
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 56.8 bits (137), Expect = 1e-09
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRISGYVA------QQDFLIEELT 57
GAG+T L+ AL G +G + +NG P+ R I +A ++ ++ L
Sbjct: 296 GAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILG 355
Query: 58 VLEHLQFMAKLTMDRRTTWLELN-----KTITRVMENLGINHRRQ-VQISGLSGGQRKRL 111
V +++ + + ++ + I ++ L + + I LSGG +++
Sbjct: 356 VGKNITLSV---LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA 412
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LA LLT P++L DEPT G+D + + L+ QLA E +I
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
Score = 39.4 bits (92), Expect = 6e-04
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 4 SGAGKTTLLAALNK-RVKGLVQGEILLNGCP-----ISRTVMSRISGYVAQQDFLIEELT 57
+GAGK+TL+ L+ G GEI +G P I T + I + Q+ L+ EL+
Sbjct: 36 NGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV-IIHQELTLVPELS 94
Query: 58 VLEHLQFMAKLTMD-RRTTWLELNKTITRVMENLGI---NHRRQVQISGLSGGQRKRLAL 113
V E++ ++T+ R + + ++ L + N R V GGQ++ + +
Sbjct: 95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--GDYGGGQQQLVEI 152
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
A L + ++L DEP++ L ++++++ L
Sbjct: 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 56.9 bits (138), Expect = 1e-09
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNG-CPISR-----------TVMSRISGYVAQQDFL 52
GAGK+TL+ LN V L G I+ ++R TV ++ + +Q
Sbjct: 39 GAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEY 97
Query: 53 IEELTVLEH----------LQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQI 100
++ + H L +AKL +D W +L I V+ LG++ +
Sbjct: 98 LKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLW-QLENRINEVLAQLGLD--PDAAL 154
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
S LSGG ++ AL L++ P +L DEPT LD
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 36.5 bits (85), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
LSGG+R RL LA L +L DEPT LD
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 55.8 bits (134), Expect = 1e-09
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-SRTV----MSRISGYVAQQD 50
+ PSG GK+T L N R+ L+ +GEI ++G I + V + + G V Q+
Sbjct: 35 IGPSGCGKSTFLRLFN-RMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLE--LNKTITRVMENLGINHRRQVQISGLSGGQR 108
+ ++ E++ + ++ + ++ + +T+ + + + LSGGQ+
Sbjct: 94 NPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQ 152
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+RL +A + P +L DEP + LD S V L+ +L + IVI
Sbjct: 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVI 200
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 55.6 bits (134), Expect = 1e-09
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNG-------------CPISRTVMSRISGYVAQ- 48
PSG+GK+T+L L ++ + +G+I + G P + ++ +
Sbjct: 34 PSGSGKSTILRIL-MTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92
Query: 49 -QDF-LIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
Q F L TVL+++ + L M R E K +++ +G+ + + LS
Sbjct: 93 FQSFNLFPHKTVLDNVTEAPVLVLGMARA----EAEKRAMELLDMVGLADKADHMPAQLS 148
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GGQ++R+A+A L P+++ DE T+ LD V+N++++LA E + +
Sbjct: 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTM 200
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 55.6 bits (134), Expect = 1e-09
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQDFL 52
PSG GK+TLL N R+ L+ G+IL NG I + ++ G V Q+
Sbjct: 40 PSGCGKSTLLRCFN-RMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL--------GINHRRQVQISGLS 104
+ ++ E++ + ++ ++ KT+ ++E + R LS
Sbjct: 99 FPK-SIYENVAYGPRIHGEKN------KKTLDTIVEKSLKGAALWDEVKDRLHDSALSLS 151
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GGQ++RL +A L P+++ DEP + LD + + +L++ L E ++I
Sbjct: 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVII 203
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 56.0 bits (136), Expect = 1e-09
Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 22/157 (14%)
Query: 4 SGAGKTTLLAALNKRVKGL---VQGEILLNGCPISRTVMS--------RISGYVAQQDFL 52
SGAGK+TL+ +N L G +L++G + T +S R G + Q L
Sbjct: 40 SGAGKSTLIRCIN----LLERPTSGRVLVDGQDL--TALSEKELRKARRQIGMIFQHFNL 93
Query: 53 IEELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
+ TV +++ +L + E+ +T ++E +G++ + + LSGGQ++R+
Sbjct: 94 LSSRTVFDNVALPLELAGTPKA----EIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
A+A L + P++L CDE T+ LD + +++ LLK +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 56.3 bits (136), Expect = 1e-09
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 20/158 (12%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVM----SRISGYVAQQD---FLI 53
SG+GK+T AL + + QGEI +G P+ +R + RI V QD L
Sbjct: 321 SGSGKSTTGLALLRLINS--QGEIWFDGQPLHNLNRRQLLPVRHRIQ--VVFQDPNSSLN 376
Query: 54 EELTVLEHLQFMAK-LTMDRRT-TWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKR 110
L VL Q + + L + + T + + + + VME +G++ R + SGGQR+R
Sbjct: 377 PRLNVL---QIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+A+A L+ +P ++ DEPT+ LD ++ LLK L
Sbjct: 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
Score = 52.0 bits (125), Expect = 4e-08
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGG+R+R+ +A+ LLT P++L DEPTT LD ++ LL++L E + + I
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 163 TSGVFEKFDTVSLLAHG 179
S V + D V+++ +G
Sbjct: 217 LSIVRKLADRVAVMQNG 233
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 55.2 bits (133), Expect = 2e-09
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 15/193 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
SG GK+TLL + GL Q G ++L G I+ R+ V Q L+ LTV E
Sbjct: 20 SGCGKSTLL----NLISGLAQPTSGGVILEGKQITEPGPDRM--VVFQNYSLLPWLTVRE 73
Query: 61 HLQFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
++ + D + E + + +G+ + LSGG ++R+A+A L
Sbjct: 74 NIALAVDRVLPDLSKS--ERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI 131
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLLAH 178
P++L DEP LD+ + N+ L Q+ E R+ V+ H + D V +L +
Sbjct: 132 RPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLS-DRVVMLTN 190
Query: 179 GGLLAYHGQVSKV 191
G A GQ+ +V
Sbjct: 191 GP-AANIGQILEV 202
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 55.2 bits (134), Expect = 2e-09
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
SG GK+T+++ L +R GEILL+G I R + S+I G V+Q+ L + T+
Sbjct: 37 SSGCGKSTVVSLL-ERFYDPTSGEILLDGVDIRDLNLRWLRSQI-GLVSQEPVLFD-GTI 93
Query: 59 LEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLAL 113
E++++ A I + +L + V G LSGGQ++R+A+
Sbjct: 94 AENIRYGKPDATDEEVEEAAKKAN---IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAI 150
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
A LL P+IL DE T+ LD+ S V L + A + R I
Sbjct: 151 ARALLRNPKILLLDEATSALDAESEKLVQEALDR-AMKGRTTI 192
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 56.0 bits (136), Expect = 2e-09
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 26/189 (13%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS----GYVAQQDFLIEELT 57
GAGK+TL+ L GL Q GEI ++G + G V Q L+ LT
Sbjct: 40 GAGKSTLMKILF----GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V E++ + + + I + E G+ +++ LS G+++R+ + L
Sbjct: 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL 155
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKF------- 170
++L DEPT L A+ + +L++LA E + +I H K
Sbjct: 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH--------KLKEVMAIA 207
Query: 171 DTVSLLAHG 179
D V++L G
Sbjct: 208 DRVTVLRRG 216
Score = 44.8 bits (107), Expect = 1e-05
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPI--SRTVMSRIS---GYVA---QQDFLIEE 55
+G G++ L+ A++ ++ G ILLNG + + R YV L+ +
Sbjct: 293 AGNGQSELVEAISG-LRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351
Query: 56 LTVLEHL----QFMAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQRKR 110
L++ E+L + + K ++E + LSGG +++
Sbjct: 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK 411
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
L LA +L P +L +PT GLD + + L +L
Sbjct: 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 55.1 bits (133), Expect = 2e-09
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS----RTVMSRISGYVAQQDFLIEE 55
PSG GK+TLL K V L+ G +L G IS ++S Y AQ L +
Sbjct: 41 PSGCGKSTLL----KIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS-YCAQTPTLFGD 95
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI-NHRRQVQISGLSGGQRKRLALA 114
TV ++L F ++ + +E + + I+ LSGG+++R++L
Sbjct: 96 -TVYDNLIFPWQIRNQQPDP-----AIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
L P++L DE T+ LD + +NV ++ + E I + + + ++
Sbjct: 150 RNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVIT 209
Query: 175 LLAHGG 180
L H G
Sbjct: 210 LQPHAG 215
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 55.4 bits (133), Expect = 2e-09
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 1 MSPSGAGKTTLLAALNKR---VKGL-VQGEILLNGCPISRT-----VMSRISGYVAQ--Q 49
+ PSG GK+T L LN+ V+G+ ++G ++ G I + R G V Q
Sbjct: 39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98
Query: 50 DFLIEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQ 107
FL +++ +++ + K+ T D++ + +++ + + + LSGGQ
Sbjct: 99 PFL---MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
++RL +A L EP ++ DEPT+ LD S + L+ L ES +I H
Sbjct: 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTH 207
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 55.6 bits (134), Expect = 2e-09
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV-MSRISGYVAQQDFLIEELTVL 59
+ SG GK+TLL L + G+I+L+G +S R + Q L +TV
Sbjct: 51 LGASGCGKSTLLRML-AGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV---QISGLSGGQRKRLALAVQ 116
+++ F L D+ L + +RV E LG+ H ++ + LSGGQR+R+ALA
Sbjct: 110 QNIAF--GLKQDK----LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARS 163
Query: 117 LLTEPQILFCDEPTTGLD 134
L P++L DEP LD
Sbjct: 164 LAKRPKLLLLDEPMGALD 181
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 55.1 bits (132), Expect = 2e-09
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD 50
+ PSG GK+TLL ALN R+ +V +G +LL+ I + ++ G V QQ
Sbjct: 36 IGPSGCGKSTLLRALN-RMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI--NHRRQVQISG--LSGG 106
+ ++ +++ F + M T L++ + + + + + + SG LSGG
Sbjct: 95 NPFPK-SIFDNVAFGPR--MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
Q++RL +A L EP+++ DEP + LD S + L+++L I I
Sbjct: 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAI 201
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 55.7 bits (135), Expect = 2e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGGQR+R+ +A+ L EP +L DEPTT LD +++LLK+L E + I I
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217
Query: 163 TSGVFEKFDTVSLLAHG 179
V + D V ++ HG
Sbjct: 218 LGIVRKFADRVYVMQHG 234
Score = 50.0 bits (120), Expect = 2e-07
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 34/165 (20%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDF----- 51
SG+GK+TL AL + + QGEI +G I R + R+ V Q +
Sbjct: 322 SGSGKSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRPLRRRMQ-VVFQDPYGSLSP 378
Query: 52 ------LIEE-LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGL 103
+IEE L V E KL+ R ++ + +E +G++ R
Sbjct: 379 RMTVGQIIEEGLRVHE-----PKLSAAER------DQRVIEALEEVGLDPATRNRYPHEF 427
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
SGGQR+R+A+A L+ +P+++ DEPT+ LD V++LL+ L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 55.0 bits (132), Expect = 2e-09
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 16/160 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEIL----------LNGCPISRTVMSRISGYVAQQD 50
+ PSG GK+T+L +LN R+ LV+G + G + V+ R G V QQ
Sbjct: 40 IGPSGCGKSTVLRSLN-RMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS--GGQR 108
+++ +++ F +L + + + L + ++++SGLS GGQ+
Sbjct: 99 NPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA--LWDEVKDKLKVSGLSLSGGQQ 155
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+RL +A + TEP++L DEP + LD + V L+ +L
Sbjct: 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 55.2 bits (133), Expect = 2e-09
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 26/164 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGL-----VQGEILLNG----CPISRTVMSRIS-GYVAQQD-- 50
PSG+GK+TLL ++N R+ L + G I+ NG P + TV R G V QQ
Sbjct: 39 PSGSGKSTLLRSIN-RMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97
Query: 51 FLIEELTVLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGI----NHRRQVQISGLS 104
F +++ E++ + +L D++ L++ + + ++ I R GLS
Sbjct: 98 F---PMSIYENVVYGLRLKGIKDKQV----LDEAVEKSLKGASIWDEVKDRLHDSALGLS 150
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
GGQ++R+ +A L T P+I+ DEPT+ LD SA + L L
Sbjct: 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 55.5 bits (134), Expect = 2e-09
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 26/173 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFL-----IE 54
PSG+GK+TL L +R+ G++L++G ++ + R G V Q++ L +
Sbjct: 491 PSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549
Query: 55 ELTV------LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
+ + EH+ AKL + I+ + + G N + + LSGGQR
Sbjct: 550 NIALCNPGAPFEHVIHAAKLA--------GAHDFISELPQ--GYNTEVGEKGANLSGGQR 599
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+R+A+A L+ P+IL DE T+ LD S ++ ++++ C R VI H+
Sbjct: 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHR 651
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 54.4 bits (131), Expect = 3e-09
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
PSG+GK+T+ AL + G++LL+G PIS + + S++S V Q+ L ++
Sbjct: 48 PSGSGKSTV-VALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS-LVGQEPVLFAR-SL 104
Query: 59 LEHLQF-MAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQ 116
+++ + + + + + + + E G + + S LSGGQ++R+A+A
Sbjct: 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
L+ PQ+L DE T+ LD+ S V L
Sbjct: 165 LIRNPQVLILDEATSALDAESEQQVQQALYD 195
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 54.8 bits (132), Expect = 3e-09
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 23/172 (13%)
Query: 1 MSPSGAGKTTLLAALNKR---VKGL-VQGEILLNGCPISRTV---MSRIS-GYVAQQ--D 50
+ PSG GK+TLL LN+ ++G+ + G++ ++G I + RI G V Q+
Sbjct: 35 IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94
Query: 51 FLIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLS 104
F +++ E++ + A+ D++ L++ + R + + R + GLS
Sbjct: 95 F---PMSIYENVAYGLRAQGIKDKKV----LDEVVERSLRGAALWDEVKDRLKSHAFGLS 147
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GGQ++RL +A + EP ++ DEPT+ LD + + + L+++L IVI
Sbjct: 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVI 199
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 54.1 bits (130), Expect = 5e-09
Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
+ PSG GK+T + LN ++ + + GE+ NG I + + + G V Q+
Sbjct: 44 IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQ 107
+ ++ +++ + ++ + +L + + + ++++ + R Q LSGGQ
Sbjct: 104 PFPQ-SIFDNVAYGPRIHGTKNKK--KLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQ 160
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
++RL +A L T P +L DEPT+ LD S + L+ +L + IVI
Sbjct: 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVI 209
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 54.2 bits (130), Expect = 5e-09
Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 17/170 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-SRTV----MSRISGYVAQQD 50
+ PSG GK+T+L ++N R+ L V G+ILL+ I R V + R G V Q+
Sbjct: 36 IGPSGCGKSTVLRSIN-RMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGG 106
+++ +++ +A ++ R E ++ + ++ + + R + LSGG
Sbjct: 95 NPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG 152
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
Q++RL +A + +P+++ DEP + LD S + L+++L + I+I
Sbjct: 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIII 202
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 53.8 bits (130), Expect = 5e-09
Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 43/214 (20%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISRTVMSRISGYVAQQDFLIEELTVL 59
PSG+GK+TL L R + G IL++G + + R G V+Q FL + TV
Sbjct: 36 PSGSGKSTL-VNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVA 93
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV----------QI----SGLSG 105
E++ + T V E + + I LSG
Sbjct: 94 ENIAYGR------------PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSG 141
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG 165
GQR+R+A+A LL +P IL DE T+ LD+ S V L++L ++R H+ ++
Sbjct: 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLST- 199
Query: 166 VFEKFDTVSLLAHGG---------LLAYHGQVSK 190
E D + +L G LLA G +K
Sbjct: 200 -IENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 53.7 bits (129), Expect = 5e-09
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELTVL 59
+GAGKTTLL L + G I+ +G I+ ++I V + + +TV
Sbjct: 40 NGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAVQLL 118
E+L M +R + + I V E H R++Q +G +SGG+++ LA+ L+
Sbjct: 99 ENLA-MGGFFAERD----QFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM 153
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
++P++L DEP+ GL + + ++QL +
Sbjct: 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 53.8 bits (130), Expect = 5e-09
Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSR--ISGYVAQQDFLIEELTVLE 60
PSGAGK+TLL L G + LNG + T SR +S + Q++ L LTV +
Sbjct: 33 PSGAGKSTLLN-LIAGFLTPASGSLTLNGQDHTTTPPSRRPVS-MLFQENNLFSHLTVAQ 90
Query: 61 H----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+ L KL +R + + + +GI LSGGQR+R+ALA
Sbjct: 91 NIGLGLNPGLKLNAAQR-------EKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARC 143
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
L+ E IL DEP + LD ++ L+ Q+ C+ R
Sbjct: 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQV-CQER 179
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 53.9 bits (129), Expect = 6e-09
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI--SRTVMSRIS---GYVAQQD 50
+ PSG GK+T + LN R+ L V+G + G I R ++R+ G V Q+
Sbjct: 39 IGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS----GLSGG 106
+++ E++ + +++ + +L++ + ++ + + +++ GLSGG
Sbjct: 98 NPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
Q++RL +A L +P++L DEP + LD + V L+ L E I I
Sbjct: 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 53.5 bits (129), Expect = 7e-09
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 4 SGAGKT-TLLAALNKRVKGL--VQGEILLNGCPI-SRTVMSRISGYVAQ--QDFLIEELT 57
SG+GK+ T LA L GL GEILL+G P+ ++ R + Q + T
Sbjct: 21 SGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80
Query: 58 VLEH----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS---GLSGGQRKR 110
+ H L+ + KL+ R I +E +G+ +V LSGG +R
Sbjct: 81 MGNHAIETLRSLGKLSKQAR-------ALILEALEAVGLPDPEEVLKKYPFQLSGGMLQR 133
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+ +A+ LL EP L DEPTT LD + V+ LL++L
Sbjct: 134 VMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 53.7 bits (130), Expect = 7e-09
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GLSGGQ++RL +A L +P++L DEPT+ LD S + L+ +L + IVI
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVI 203
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 54.0 bits (130), Expect = 8e-09
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 13/184 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
SG+GK+TL L R G+ILL+G ++ ++ +++ V+Q L + T+
Sbjct: 366 RSGSGKSTL-VNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA-LVSQDVVLFND-TI 422
Query: 59 LEHLQFMAKLTMDR-RTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAV 115
++ + DR ++ L + + +G LSGGQR+RLA+A
Sbjct: 423 ANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
LL + IL DE T+ LD+ S V L++L + R + H+ ++ EK D + +
Sbjct: 483 ALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLST--IEKADRIVV 539
Query: 176 LAHG 179
+ G
Sbjct: 540 MDDG 543
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 53.4 bits (128), Expect = 8e-09
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD 50
+ PSG GK+T + LN R+ L+ +G I L+G I + + G V Q+
Sbjct: 35 IGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG-------INHRRQVQISGL 103
+ ++ +++ + ++ + ++E RV E+L + + GL
Sbjct: 94 NPFPK-SIFDNVAYGLRIHGEDDEDFIE-----ERVEESLKAAALWDEVKDKLDKSALGL 147
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
SGGQ++RL +A + P+++ DEP + LD S + +L+ +L + IVI
Sbjct: 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVI 200
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 53.4 bits (128), Expect = 9e-09
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRTVMSRIS-----GYVAQQD 50
+ PSG GK+T L ++N R+ L+ +GEIL G I + ++ ++ G V Q+
Sbjct: 53 IGPSGCGKSTFLRSIN-RMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLE--LNKTITRVMENLGINHRRQVQISGLSGGQR 108
+ ++ ++ K +RR + L+ + +++T+ + R LSGGQ+
Sbjct: 112 NPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+RL +A L +P +L DEP + LD S + L+ +L E I+I
Sbjct: 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIII 218
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 53.0 bits (128), Expect = 1e-08
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD-SYSANNVVNLLKQL 148
LSGGQR+R+ +A L P+++ DEP + LD S A ++NLLK L
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQA-QILNLLKDL 155
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 53.4 bits (129), Expect = 1e-08
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRISGYVA------QQDFLIEELT 57
GAG+T L+ L G +GEI ++G P+ R I+ +A ++D ++ +
Sbjct: 298 GAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMG 357
Query: 58 VLEHLQFMAKLTMDRRTTWLELN-----KTITRVMENLGINHRRQVQ-ISGLSGGQRKRL 111
V +++ A +DR T ++ KTI ++ L + I+ LSGG +++
Sbjct: 358 VGKNITLAA---LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVI 156
LA LL P+IL DEPT G+D + + L+ QL + + IVI
Sbjct: 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI 461
Score = 43.4 bits (103), Expect = 3e-05
Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 5 GAGKTTLLAALNKRVK-GLVQGEILLNGCP-----ISRTVMSRISGYVAQQDFLIEELTV 58
GAGK+TL+ L+ G +GEI+ G I T + I+ + Q+ L++EL+V
Sbjct: 41 GAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA-IIHQELALVKELSV 99
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
LE++ ++T + + +++ L ++ + L GQ++ + +A L
Sbjct: 100 LENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN 159
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA-IHQPTSGVFEKFDTVSLLA 177
+ ++L DEPT L ++++++ L ++ + C I + V DT+ ++
Sbjct: 160 KQARLLILDEPTASLTESETAVLLDIIRDL--KAHGIACIYISHKLNEVKAISDTICVIR 217
Query: 178 HG 179
G
Sbjct: 218 DG 219
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 52.6 bits (127), Expect = 1e-08
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 29/199 (14%)
Query: 1 MSPSGAGKTTLLAAL--NKRVKGLVQGEILLNG-CPISRTVMSR--------------IS 43
M P+G+GK+TL + + + + G IL G + R I
Sbjct: 32 MGPNGSGKSTLSKTIAGHPSYE-VTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90
Query: 44 GYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQI 100
G V+ +FL L + L + L+ K + + LG++ R V
Sbjct: 91 G-VSNLEFLRSALNARRSARGEEPLDL------LDFLKLLKAKLALLGMDEEFLNRSVNE 143
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
G SGG++KR + L EP++ DE +GLD + V + +L R + H
Sbjct: 144 -GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202
Query: 161 QPTSGVFEKFDTVSLLAHG 179
+ K D V +L G
Sbjct: 203 YQRLLNYIKPDYVHVLLDG 221
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 52.9 bits (127), Expect = 1e-08
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 66/191 (34%)
Query: 3 PSGAGKTTLLAALNKRVKGL-----VQGEILLNGC------------------------P 33
PSG GK+T L +N R+ L V+GE+ G P
Sbjct: 73 PSGCGKSTFLRCIN-RMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131
Query: 34 ISRTVMS------RISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVM 87
+++ +I GY D +EE ++ R W E+
Sbjct: 132 FPKSIYDNVAYGLKIQGYDGDIDERVEE-------------SLRRAALWDEVKD------ 172
Query: 88 ENLGINHRRQVQISG--LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
Q+ SG LSGGQ++RL +A + +P+++ DEP + LD + + + +L+
Sbjct: 173 ---------QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLI 223
Query: 146 KQLACESRIVI 156
++LA E +VI
Sbjct: 224 EELAEEYTVVI 234
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 52.2 bits (126), Expect = 1e-08
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
LSGG+++R+A+A +L P IL DE T+ LD+++ + L+ + + R I H
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGRTTIVIAH 194
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 53.0 bits (128), Expect = 1e-08
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+ LSGGQR+R+ALA L +P ++ DEP + LDS + + V+ H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 161 QPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
+P D + +L G + A+ G +VL
Sbjct: 531 RP--SALASVDKILVLQDGRIAAF-GPREEVLAKV 562
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 52.4 bits (126), Expect = 2e-08
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 86 VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
+++ L + H I LSGG+ +R+A+A L + F DEP++ LD N L+
Sbjct: 123 LVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182
Query: 146 KQLACESRIVICAIH 160
++LA + V+ H
Sbjct: 183 RELAEDDNYVLVVEH 197
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 51.7 bits (125), Expect = 2e-08
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTVL 59
+G+GK++LL AL R+ L G IL++G IS + SRIS + QD ++ T+
Sbjct: 39 TGSGKSSLLLAL-FRLVELSSGSILIDGVDISKIGLHDLRSRIS--IIPQDPVLFSGTIR 95
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
+L + + + LE V G++ + LS GQR+ L LA LL
Sbjct: 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+ +IL DE T +D + + +++ A + V+ H
Sbjct: 156 RKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAH 196
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 52.5 bits (126), Expect = 2e-08
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGGQ +R+A+A + EP+IL DEP GLD ++ L K VI H
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN- 204
Query: 163 TSGVFEKFDTVSLLAHGGLL 182
V E D V +L HG L+
Sbjct: 205 MDDVAEYADDVLVLEHGKLI 224
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 51.9 bits (124), Expect = 3e-08
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL-----VQGEILLNG----CPISRTVMSRIS-GYVAQQD 50
+ PSG GK+T L LN R+ L + G + L G P V R G V QQ
Sbjct: 37 IGPSGCGKSTYLRTLN-RMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95
Query: 51 FLIEELTVLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGI-----NHRRQVQISGL 103
++ E++ + +L D+ L++ + ++ I +H + +S L
Sbjct: 96 NPFP-FSIYENVIYGLRLAGVKDKAV----LDEAVETSLKQAAIWDEVKDHLHESALS-L 149
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA--IHQ 161
SGGQ++R+ +A L +P ++ DEPT+ LD S+ + N+L +L + I++ +HQ
Sbjct: 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209
Query: 162 PT 163
+
Sbjct: 210 AS 211
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 51.9 bits (124), Expect = 3e-08
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 22/173 (12%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-----QGEILL---NGCPISRTV-----MSRISGYVA 47
+ PSG GK+T L N R+ L +GEI+L N +S V RIS
Sbjct: 48 IGPSGCGKSTFLRCFN-RMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106
Query: 48 QQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGL 103
+ + + ++ E++ + ++ +R + LE + + + N + R L
Sbjct: 107 KPNPFPK--SIFENVAYGLRIRGVKRRSILE--ERVENALRNAALWDEVKDRLGDLAFNL 162
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
SGGQ++RL +A L T+P+IL DEPT+ LD + ++ L+ L + I+I
Sbjct: 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILI 215
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 51.8 bits (125), Expect = 4e-08
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 59/176 (33%)
Query: 3 PSGAGKTTLL---AALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
+GAGK+TLL A ++K GE V GY+ Q+ L TV
Sbjct: 39 LNGAGKSTLLRIMAGVDKEF----NGEARPAP---GIKV-----GYLPQEPQLDPTKTVR 86
Query: 60 EHLQF--------------------------------MAKL--TMDRRTTWLELNKTITR 85
E+++ A+L +D W +L++ +
Sbjct: 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW-DLDRKLEI 145
Query: 86 VMENLGINHRR----QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
M+ L R ++ LSGG+R+R+AL LL++P +L DEPT LD+ S
Sbjct: 146 AMDAL-----RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196
Score = 40.3 bits (95), Expect = 3e-04
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 48/150 (32%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TL + + G Q G I I TV ++ YV Q
Sbjct: 356 PNGAGKSTLF----RMITGQEQPDSGTI-----KIGETV--KL-AYVDQSR--------- 394
Query: 60 EHLQFMAKLTMDRRTTWLEL---NKTITRVMENLGINHR------------RQVQISGLS 104
+ L +T W E+ I + + R +Q ++ LS
Sbjct: 395 DALD-------PNKTVWEEISGGLDIIQ--LGKREVPSRAYVGRFNFKGSDQQKKVGQLS 445
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
GG+R R+ LA L + +L DEPT LD
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 51.0 bits (123), Expect = 4e-08
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 41/185 (22%)
Query: 1 MSPSGAGKTTLLAAL--NKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQD-FLIE 54
M P+G+GK+TL + + + + + +GEIL G I +R+ ++A Q I
Sbjct: 32 MGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
+ + L++ +N+ G SGG++KR +
Sbjct: 91 GVKNADFLRY--------------VNE--------------------GFSGGEKKRNEIL 116
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
LL EP + DEP +GLD + V ++ +L E + V+ H + K D V
Sbjct: 117 QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVH 176
Query: 175 LLAHG 179
+L G
Sbjct: 177 VLYDG 181
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 51.3 bits (123), Expect = 4e-08
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
E+ K + V+ ++G+ + + LSGGQ++R+A+A L EP+I+ DE T+ LD
Sbjct: 119 EMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178
Query: 138 ANNVVNLLKQLACESRIVICAIHQPTSGVFEK--FDTVSLLAHGGLLA 183
++ L+++L ++ + + +I T + E D V +L G LLA
Sbjct: 179 KEQILKLIRKLKKKNNLTVISI---THDIDEANMADQVLVLDDGKLLA 223
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 50.5 bits (122), Expect = 4e-08
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 37/150 (24%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-RTVMSRIS---GYVAQQDFLIEELTVL 59
G G+T L AL ++ GEI L+G P++ R+ I YV +
Sbjct: 35 VGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPE----------- 82
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
DR+ L L+ ++ EN+ ++ LSGG ++++ LA L
Sbjct: 83 -----------DRKREGLVLDLSV---AENIALSSL-------LSGGNQQKVVLARWLAR 121
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
+P++L DEPT G+D + + L+++LA
Sbjct: 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELA 151
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 51.9 bits (125), Expect = 4e-08
Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 36/203 (17%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ-GEILLNGCPISRTVMSRISGYVAQQDF--------LI 53
SGAGKT+LL AL GL G ++ S + Y+ Q
Sbjct: 427 ESGAGKTSLLRALA----GLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAA 482
Query: 54 EELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
+ + E + + K+ + L+ RV LSGG+++RLA
Sbjct: 483 PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV----------------LSGGEQQRLAF 526
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
A LL +P+ +F DE T+ LD + + + LLK+ VI H+PT F +
Sbjct: 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHRPTLWNFHS-RQL 584
Query: 174 SLLAHGGLLAYHGQVSKVLKHFA 196
LL G GQ K
Sbjct: 585 ELLDDAG-----GQNLKPPALPT 602
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 51.6 bits (123), Expect = 5e-08
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
M SG+GK+T++ LN+ ++ +G++L++G I+ R V + V Q L+
Sbjct: 60 MGLSGSGKSTMVRLLNRLIEP-TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 54 EELTVLEHLQFMAKLT----MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
+TVL++ F +L +RR L+ + +G+ + LSGG R+
Sbjct: 119 PHMTVLDNTAFGMELAGINAEERREKALD-------ALRQVGLENYAHSYPDELSGGMRQ 171
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEK 169
R+ LA L P IL DE + LD + + L +L + + I I
Sbjct: 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231
Query: 170 FDTVSLLAHG 179
D ++++ +G
Sbjct: 232 GDRIAIMQNG 241
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 49.4 bits (119), Expect = 6e-08
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
LSGG++ RLALA LL P +L DEPT LD S + LK+
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 51.0 bits (122), Expect = 6e-08
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 3 PSGAGKTTLLAALNKR---VKGL-VQGEILLNGCPI----SRTVMSRIS-GYVAQQ---- 49
PSG GK+T L N+ V V+GE+ ++G + + V+ R G V Q+
Sbjct: 39 PSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98
Query: 50 -DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRV--MENLGINHRRQVQISGLSGG 106
+ + + L +AK +++ + K++T V E LG R + LSGG
Sbjct: 99 PKSIYDNVAYGPKLHGLAK---NKKKLDEIVEKSLTSVGLWEELG--DRLKDSAFELSGG 153
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGV 166
Q++RL +A + +P +L DEP + LD + N + NL+++L + I +
Sbjct: 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL--KKNFTIIVVTHSMKQA 211
Query: 167 FEKFDTVSLLAHGGLLAYHGQVSKVLK 193
+ D V+ G + + ++ K
Sbjct: 212 KKVSDRVAFF-QSGRIVEYNTTQEIFK 237
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 51.0 bits (122), Expect = 6e-08
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GLSGGQ++RL +A L +P+++ DEP + LD + + + +L+++LA E +V+
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVV 254
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 50.2 bits (120), Expect = 8e-08
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL---VQGEILLNGC------PISRTVMSRISGYVAQQDF 51
+ PSG+GK+TLL + G G +L+NG P R V + Q++
Sbjct: 30 VGPSGSGKSTLL----NLIAGFETPQSGRVLINGVDVTAAPPADRPVSM-----LFQENN 80
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELN----KTITRVMENLGINHRRQVQISGLSGGQ 107
L LTV +++ + L+L + I + +G+ + LSGG+
Sbjct: 81 LFAHLTVEQNVGL-------GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGE 133
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGV 166
R+R+ALA L+ + +L DEP LD +++L+ L E+++ V+ HQP
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA- 192
Query: 167 FEKFDTVSLLAHGGLLAYHG 186
++ + G +A G
Sbjct: 193 -KRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 50.9 bits (122), Expect = 9e-08
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
+G+GK+TL A+L L +GEI L+G P+S S + VA QQD V+
Sbjct: 376 TGSGKSTL-ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD------PVVLA 428
Query: 62 LQFMAKLTMDRRTT----WLELNK----TITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
F+A +T+ R + W L + R + + G+ Q + LS GQ++ LAL
Sbjct: 429 DTFLANVTLGRDISEEQVWQALETVQLAELARSLPD-GLYTPLGEQGNNLSVGQKQLLAL 487
Query: 114 AVQLLTEPQILFCDEPTTGLDS 135
A L+ PQIL DE T +DS
Sbjct: 488 ARVLVQTPQILILDEATANIDS 509
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 50.8 bits (122), Expect = 9e-08
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 85 RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
V+E LG+ + +S LSGG+ +R+A+A LL + + F DEP++ LD N +
Sbjct: 196 EVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255
Query: 145 LKQLACESRIVICAIH 160
+++LA + + VI H
Sbjct: 256 IRELAEDGKYVIVVEH 271
Score = 42.7 bits (101), Expect = 6e-05
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 35/143 (24%)
Query: 1 MSPSGAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
+ P+G GKTT LLA + K +G + ++S Y Q + T
Sbjct: 373 LGPNGIGKTTFVKLLAGVIKPDEGSEED--------------LKVS-YKPQYISPDYDGT 417
Query: 58 VLEHLQFMAKLTMDRRTT---WLELNK--TITRVMENLGINHRRQVQISGLSGGQRKRLA 112
V + + E+ K + ++E + LSGG+ +R+A
Sbjct: 418 VE---DLLRSAIRSAFGSSYFKTEIVKPLNLEDLLER---------PVDELSGGELQRVA 465
Query: 113 LAVQLLTEPQILFCDEPTTGLDS 135
+A L E + DEP+ LD
Sbjct: 466 IAAALSREADLYLLDEPSAYLDV 488
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 50.1 bits (120), Expect = 9e-08
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
+ P+GAGK+TL+ RV V G + + I R RI GYV Q+
Sbjct: 36 LGPNGAGKSTLV-----RV---VLGLVAPDEGVIKRNGKLRI-GYVPQK----------L 76
Query: 61 HLQFMAKLTMDRRTTWLEL-----NKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
+L LT++R +L L + I ++ + H + LSGG+ +R+ LA
Sbjct: 77 YLDTTLPLTVNR---FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLAR 133
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
LL PQ+L DEPT G+D + +L+ QL E + + V K D V
Sbjct: 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLC 193
Query: 176 LAH 178
L H
Sbjct: 194 LNH 196
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 50.9 bits (122), Expect = 1e-07
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 27/161 (16%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLIEE 55
PSGAGK+TL L R G ILL+G + R M+ + QD ++
Sbjct: 374 PSGAGKSTLFQLL-LRFYDPQSGRILLDGVDLRQLDPAELRARMA-----LVPQDPVLFA 427
Query: 56 LTVLEHLQF----MAKLTMDRRTTWLELNKTITRVMEN----LGINHRRQVQISGLSGGQ 107
+V+E++++ ++ ++ I+ + E LG R V LSGGQ
Sbjct: 428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG---ERGV---TLSGGQ 481
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
R+R+A+A +L + IL DE T+ LD+ S V L+ L
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 50.5 bits (121), Expect = 1e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
SGGQ +R+ +A L+ EP+++ CDEP + LD VVNLL+QL E
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 50.2 bits (120), Expect = 1e-07
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 3 PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPI-----SRTVMSRISGYVAQQDFL 52
PSG GK+T + LN+ V+ LV G+IL I S + G V Q+
Sbjct: 58 PSGCGKSTYIKTLNRMVE-LVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116
Query: 53 IEELTVLEHLQFMAKL--TMDRRTTWLELNKTITRVMENLGI----NHRRQVQISGLSGG 106
+ ++ +++ + K+ D++T L++ + + + I R GLSGG
Sbjct: 117 FPK-SIYDNVTYGPKIHGIKDKKT----LDEIVEKSLRGAAIWDELKDRLHDNAYGLSGG 171
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
Q++RL +A L EP ++ DEPT+ LD S V L+++L + I+I
Sbjct: 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 50.1 bits (119), Expect = 1e-07
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 1 MSPSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISRTVMSRISGYVAQQDFLIEEL 56
M P+G+GKTT L LN+ +V G G++LL G R++ + Y +F
Sbjct: 53 MGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG----RSIFN----YRDVLEFRRRVG 104
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--------------G 102
+ + MD + +K + R E G+ R ++
Sbjct: 105 MLFQRPNPFPMSIMDNVLAGVRAHKLVPR-KEFRGVAQARLTEVGLWDAVKDRLSDSPFR 163
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGGQ++ L LA L P++L DEPT+ LD + + ++ LA ++I
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVII 217
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 50.1 bits (119), Expect = 1e-07
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 1 MSPSGAGKTTLLAALNKR---VKGLV-QGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
+ PSG GK+T L LN+ ++G +GEI G +S + G V Q+
Sbjct: 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173
Query: 52 LIEELTVLEHLQFMAKLT--MDRRTTWLELNKTITRVMENLGINHRRQVQI----SGLSG 105
E +++ +++ + + DR+ L K + + +++ + + + + LSG
Sbjct: 174 PFE-MSIFDNVAYGPRNNGINDRKI----LEKIVEKSLKSAALWDEVKDDLDKAGNALSG 228
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GQ++RL +A + EP++L DEPT+ LD + + L+ +L + I+I
Sbjct: 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 50.1 bits (119), Expect = 1e-07
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 14/189 (7%)
Query: 4 SGAGKTTLLAALN---KRVKGLVQ-GEILLNGCPISRTV--MSRISGYVAQ--QDFLIEE 55
+G+GK+TLL LN + +G V G+I+++ + + + + G V Q + L EE
Sbjct: 41 TGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE 100
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRKRLALA 114
TVL+ + F + + + K +E +G+ + LSGGQ +R+A+A
Sbjct: 101 -TVLKDVAFGPQ---NFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
L EP++L DEPT GLD + ++ L + + + V+ H V + D V
Sbjct: 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL-MDDVADYADYVY 215
Query: 175 LLAHGGLLA 183
LL G +++
Sbjct: 216 LLEKGHIIS 224
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 50.3 bits (121), Expect = 1e-07
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 31/170 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCP---ISRTVMSRISGYVAQQDFLIEEL 56
SG+GK+T+ K V GL Q GEIL +G P I R V++ V QD + E
Sbjct: 513 GSGSGKSTI----AKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMV-DQDIFLFEG 567
Query: 57 TVLEHLQF----MAKLTMDRRTTWLELNKTITR-------VMENLGINHRRQVQISGLSG 105
TV ++L + + R ++ IT + G N LSG
Sbjct: 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN---------LSG 618
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
GQR+RL +A L+ P IL DE T+ LD + + + L++ C IV
Sbjct: 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIV 668
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 50.0 bits (120), Expect = 2e-07
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGGQR+RL +A L+ +P+IL DE T+ LD+ + V L++L +RIVI
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV-TRIVI 641
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 48.1 bits (115), Expect = 3e-07
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 96 RQVQISGLSGGQRKRLALAVQL---LTEPQILFC-DEPTTGLDSYSANNVVNLLKQLACE 151
LSGG+++ ALA+ L +P+ L+ DE GLD + + + +
Sbjct: 71 LIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130
Query: 152 SRIVICAIHQP 162
VI H P
Sbjct: 131 GAQVIVITHLP 141
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 49.1 bits (117), Expect = 3e-07
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 39/219 (17%)
Query: 4 SGAGKTTLLAALNKRVKG-------LVQGEILLNGCPISR---TVMSRISGYVAQQD--- 50
+GAGK+TLL AL + G V G++ LNG P++ ++R+ + Q
Sbjct: 36 NGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA 95
Query: 51 --FLIEELTVL---EHLQFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
F E+ +L H + LT D W + + G ++ LS
Sbjct: 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAW--------QALALAGATALVGRDVTTLS 147
Query: 105 GGQRKRLALA---VQL------LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
GG+ R+ A QL P+ L DEPT LD + +++ +++LA + +
Sbjct: 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLG 207
Query: 156 ICAI-HQPTSGVFEKFDTVSLLAHGGLLAYHGQVSKVLK 193
+ AI H P D +++LA G ++A HG + VL
Sbjct: 208 VLAIVHDPNLAA-RHADRIAMLADGAIVA-HGAPADVLT 244
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 49.4 bits (118), Expect = 3e-07
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 1 MSPSGAGKTTLLAALNK-----RVKGLVQ---GEILLNGCP---ISRTVMSRISGYVAQQ 49
M SG+GK+TLL A+N R LV+ G + + C + R R+S V QQ
Sbjct: 56 MGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVS-MVFQQ 114
Query: 50 DFLIEELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
L+ TV E++ F ++ M + E K + +E +G+ + LSGG +
Sbjct: 115 FALLPWRTVEENVAFGLEMQGMPKA----ERRKRVDEQLELVGLAQWADRKPGELSGGMQ 170
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
+R+ LA TE IL DEP + LD
Sbjct: 171 QRVGLARAFATEAPILLMDEPFSALD 196
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 48.8 bits (117), Expect = 3e-07
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS--GYVA--QQDFLIEE 55
P+GAGKTT+ L G + G ILL G I +I+ G V Q L E
Sbjct: 39 PNGAGKTTVFNCLT----GFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94
Query: 56 LTVLE--------HLQ--FMAKL------------TMDRRTTWLELNKTITRVMENLGIN 93
+TV+E L+ + L +DR TWLE + L
Sbjct: 95 MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE-------RVGLLEHA 147
Query: 94 HRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
+R Q L+ GQ++RL +A ++T+P+IL DEP GL+ + L+ +L E
Sbjct: 148 NR---QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN 204
Query: 154 IVICAIHQPTSGVFEKFDTVSLLAHGGLLA 183
+ + I V D + ++ G LA
Sbjct: 205 VTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 48.9 bits (116), Expect = 3e-07
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 4 SGAGKTTLLAALNK------RVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIE 54
SG GK+T L N+ ++ GLV+ + G + + + G V QQ +
Sbjct: 37 SGCGKSTFLRCFNRMNDKIAKIDGLVE----IEGKDVKNQDVVALRKNVGMVFQQPNVFV 92
Query: 55 ELTVLEHLQFMAKL-TMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLSGGQRK 109
+ ++ E++ + KL M + E + ++ +G + + + LSGGQ++
Sbjct: 93 K-SIYENISYAPKLHGMIKNKD--EEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ 149
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
RL +A L +P++L DEPT+ LD S+ + LLK+L+
Sbjct: 150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 48.6 bits (116), Expect = 4e-07
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 38/177 (21%)
Query: 3 PSGAGKTTLLAALNKRVKGLV-----QGEILLNGCPISRT------VMSRISGYVAQQDF 51
PSG GK+T+L +LN R+ L+ +G +L +G + V RI G V QQ
Sbjct: 47 PSGCGKSTVLRSLN-RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI-GMVFQQPN 104
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI----------S 101
+ ++ E++ F A++ T M+ L R+ + S
Sbjct: 105 PFPK-SIYENIAFGARIN------------GYTGDMDELVERSLRKAAVWDECKDKLNES 151
Query: 102 G--LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
G LSGGQ++RL +A + EP+++ DEP + LD S + + +L IVI
Sbjct: 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 48.6 bits (116), Expect = 4e-07
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 25/194 (12%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS--------RTVMSRISGYVAQ----QDF 51
+G+GK+TL+ +N +K G + ++ I+ R V RI G V Q Q F
Sbjct: 42 TGSGKSTLIQNINALLKP-TTGTVTVDDITITHKTKDKYIRPVRKRI-GMVFQFPESQLF 99
Query: 52 LIEELTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--GLSGGQR 108
E TV + F K M+ E+ R++ +LG + R + S +SGGQ
Sbjct: 100 ---EDTVEREIIFGPKNFKMNLD----EVKNYAHRLLMDLGFS-RDVMSQSPFQMSGGQM 151
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
+++A+ L P I+ DEPT GLD S V+ LLK L + I + + V
Sbjct: 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR 211
Query: 169 KFDTVSLLAHGGLL 182
D V ++ G ++
Sbjct: 212 YADEVIVMKEGSIV 225
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 48.6 bits (116), Expect = 4e-07
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGGQ +R+A+A L EP+IL DEPT GLD ++ L K+L +S + I +
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHL 204
Query: 163 TSGVFEKFDTVSLLAHGGLL 182
V D V +L G L+
Sbjct: 205 MDDVANYADFVYVLEKGKLV 224
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.5 bits (115), Expect = 4e-07
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL----VQGEILLNGCPISRTVMSRIS-----GYVAQQDF 51
+ PSG GK+T L LN+ + + GEI G I + M + G V QQ
Sbjct: 36 IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95
Query: 52 LIEELTVLEHLQFMAKLT-------MDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
+V +++ + K+ +D+R +E + + + N R Q S
Sbjct: 96 PFP-FSVYDNVAYGLKIAGVKDKELIDQR---VEESLKQAAIWKETKDNLDRNAQ--AFS 149
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
GGQ++R+ +A L P+++ DEPT+ LD S++ + L +L + ++ + +
Sbjct: 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQA 209
Query: 165 GVFEKFDTVSLLAHGGLLAY 184
G D + L +G L+
Sbjct: 210 GRIS--DQTAFLMNGDLIEA 227
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 48.3 bits (115), Expect = 5e-07
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAI 159
SGG ++RL +A L+T P+++F DEPT GLD +++LL+ L + + VI
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206
Query: 160 HQPTSGVFEKFDTVSLLAHGGLLAYHGQV 188
H LLA L+ G+V
Sbjct: 207 HD--------LGVARLLAQRLLVMQQGRV 227
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 48.2 bits (115), Expect = 5e-07
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 62/189 (32%)
Query: 3 PSGAGKTTLLAALNKRVKGL-----VQGEILLNGCPI-----------SRTVM------- 39
PSG GK+T+L N R+ L V+G++ +G + R M
Sbjct: 44 PSGCGKSTILRCFN-RLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102
Query: 40 ------------SRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVM 87
+RI+GY D L+E ++ + W E V
Sbjct: 103 FPKSIYDNIAYGARINGYKGDMDELVER-------------SLRQAALWDE-------VK 142
Query: 88 ENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
+ L +Q +S LSGGQ++RL +A + +P+++ DEP + LD S + L+ +
Sbjct: 143 DKL-----KQSGLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE 196
Query: 148 LACESRIVI 156
L + I+I
Sbjct: 197 LKEQYTIII 205
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 48.5 bits (115), Expect = 5e-07
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 22/172 (12%)
Query: 1 MSPSGAGKTTLLAALNK--------RVKGLVQGEILLNGCPISRTV----MSRISGYVAQ 48
+ PSG GK+T L LN+ RV+G V+ N R V + R V
Sbjct: 39 IGPSGCGKSTFLKCLNRMNELESEVRVEGRVE---FFNQNIYERRVNLNRLRRQVSMVHP 95
Query: 49 QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLG----INHRRQVQISGLS 104
+ L ++V +++ + K+ R LE++ + +++ I H+ LS
Sbjct: 96 KPNLFP-MSVYDNVAYGVKIVGWRPK--LEIDDIVESALKDADLWDEIKHKIHKSALDLS 152
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GGQ++RL +A L +P++L DEP GLD ++ V +L++ L S + +
Sbjct: 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTM 204
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 48.2 bits (115), Expect = 5e-07
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVLE 60
+G+GK+TLL L R + +GEILL+ P+ S +R Y+ QQ E +TV E
Sbjct: 46 NGSGKSTLLKMLG-RHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE 104
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ---------------ISGLSG 105
L R W + + R G R +V+ + LSG
Sbjct: 105 -------LVAIGRYPW---HGALGR----FGAADREKVEEAISLVGLKPLAHRLVDSLSG 150
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIH 160
G+R+R +A+ + + + L DEPT+ LD +V+ L+ +L+ E + VI +H
Sbjct: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 48.2 bits (115), Expect = 5e-07
Identities = 23/82 (28%), Positives = 50/82 (60%)
Query: 78 ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
E+++ ++ ++ + + R + + LSGGQ++R+A+A L P ++ DE T+ LD +
Sbjct: 118 EMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177
Query: 138 ANNVVNLLKQLACESRIVICAI 159
N+++L++++ E I I +I
Sbjct: 178 RQNLLDLVRKVKSEHNITIISI 199
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 48.9 bits (116), Expect = 5e-07
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 25 GEILLNG---CPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNK 81
G+ILL+G C + + + V+Q+ L +++ E+++F +
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFA 1335
Query: 82 TITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
I +E+L + V G LSGGQ++R+A+A LL EP+IL DE T+ LDS S
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
Score = 45.8 bits (108), Expect = 6e-06
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS---YSANNVVNLLKQLACESRIVIC 157
S LSGGQ++R+++A ++ P+IL DE T+ LD+ Y +N LK E+RI I
Sbjct: 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK--GNENRITII 635
Query: 158 AIHQ 161
H+
Sbjct: 636 IAHR 639
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 48.2 bits (115), Expect = 6e-07
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 26/172 (15%)
Query: 3 PSGAGKTTLLAALNK---RVKGL-VQGEILLNGCPISRTV-----MSRISGYVAQQ---- 49
PSG+GK+T L +LN+ + V G+IL G I+R M + G V Q+
Sbjct: 54 PSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113
Query: 50 -DFLIEELT-VLEHLQFMAKLTMDRRT-TWLELNKTITRVMENLGINHRRQVQISGL--S 104
+ E +T LE K +D T L+ +V ++L S L S
Sbjct: 114 AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLH--------KSALTLS 165
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GGQ++RL +A + +P IL DEP + LD S + + +L I+I
Sbjct: 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIII 217
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 47.8 bits (114), Expect = 7e-07
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS----RTVMSRISGYVAQQ-DFLIE 54
P+GAGK+TLL LN G+ +G + + G ++ + V S++ G V Q D +
Sbjct: 39 PNGAGKSTLLLHLN----GIYLPQRGRVKVMGREVNAENEKWVRSKV-GLVFQDPDDQVF 93
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
TV + + F + M E+ + + ++ + + R LS GQ+KR+A+A
Sbjct: 94 SSTVWDDVAF-GPVNMGLDKD--EVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA 150
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
L +P ++ DEP LD ++ +L +L + + VI A H E D V
Sbjct: 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD-VDLAAEWADQVI 209
Query: 175 LLAHGGLLAYHG 186
+L G +LA
Sbjct: 210 VLKEGRVLAEGD 221
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 48.3 bits (115), Expect = 8e-07
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 14/181 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
SGAGKTTLL + KG + + + + + + + + E+T+LEHL
Sbjct: 417 QSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL 476
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGIN--HRRQVQISGLSGGQRKRLALAVQLLTE 120
T D ++ G++ + + S LS GQ++R LA L
Sbjct: 477 ---RSKTGDLNAA--------VEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAER 525
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLLAHG 179
P +L DE LD +A V + +LA E+ I +I H+P G + DT+ L+ +G
Sbjct: 526 PNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG 585
Query: 180 G 180
Sbjct: 586 K 586
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 48.0 bits (114), Expect = 9e-07
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTVLE 60
P+GAGKTTL+ L +RV G+IL++G I+ + +A QD + ++ E
Sbjct: 369 PTGAGKTTLINLL-QRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLL 118
+++ + D + + V G LSGG+R+RLA+A +L
Sbjct: 428 NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487
Query: 119 TEPQILFCDEPTTGLD 134
IL DE T+ LD
Sbjct: 488 KNAPILVLDEATSALD 503
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 47.9 bits (115), Expect = 1e-06
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 86 VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
V+E LG+ + IS LSGG+ +R+A+A LL + F DEPT+ LD NV L+
Sbjct: 196 VVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 146 KQLACESRIVI 156
++LA E + V+
Sbjct: 256 RELA-EGKYVL 265
Score = 43.6 bits (104), Expect = 3e-05
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 3 PSGAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ---QDFLIEEL 56
P+G GKTT LLA + K +G V E+ +IS Y Q D+ +
Sbjct: 373 PNGIGKTTFAKLLAGVLKPDEGEVDPEL-------------KIS-YKPQYIKPDY---DG 415
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TV + + +T D +++ + + +++ L + + LSGG+ +R+A+A
Sbjct: 416 TVED---LLRSITDDLGSSYYK-----SEIIKPLQLERLLDKNVKDLSGGELQRVAIAAC 467
Query: 117 LLTEPQILFCDEPTTGLD 134
L + + DEP+ LD
Sbjct: 468 LSRDADLYLLDEPSAHLD 485
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 46.9 bits (111), Expect = 1e-06
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LSGGQ++RL +A L +P+I+ DEPT+ LD S + +L+ L + IVI
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVI 208
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 46.7 bits (111), Expect = 2e-06
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
SGG ++RL +A L+T P+++F DEPT GLD +++LL+ L E +
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-------LGLAV 205
Query: 164 SGVFEKFDTVSLLAHGGLLAYHGQVS 189
V LLA ++ GQV
Sbjct: 206 VIVTHDLAVARLLADRLMVMKQGQVV 231
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 47.0 bits (113), Expect = 2e-06
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 61/177 (34%)
Query: 3 PSGAGKTTLL---AALNKRVKGLVQGE-ILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
+GAGK+TLL A ++K +GE G + GY+ Q+ L E TV
Sbjct: 41 LNGAGKSTLLRIMAGVDKEF----EGEARPAPGIKV---------GYLPQEPQLDPEKTV 87
Query: 59 LEHLQ------------F--------------------MAKL--TMDRRTTWLELNKTIT 84
E+++ F +L +D W +L+ +
Sbjct: 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAW-DLDSQLE 146
Query: 85 RVMENLGINHRR----QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
M+ L R +++ LSGG+R+R+AL LL +P +L DEPT LD+ S
Sbjct: 147 IAMDAL-----RCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
Score = 36.6 bits (86), Expect = 0.005
Identities = 44/150 (29%), Positives = 59/150 (39%), Gaps = 48/150 (32%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TL K + G Q G I I TV +++ YV Q
Sbjct: 358 PNGAGKSTLF----KMITGQEQPDSGTIK-----IGETV--KLA-YVDQSR--------- 396
Query: 60 EHLQFMAKLTMDRRTTWLEL---NKTITRVMENLGINHR------------RQVQISGLS 104
+ L +T W E+ I + N I R +Q ++ LS
Sbjct: 397 DALD-------PNKTVWEEISGGLDIIK--VGNREIPSRAYVGRFNFKGGDQQKKVGVLS 447
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
GG+R RL LA L +L DEPT LD
Sbjct: 448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 46.6 bits (111), Expect = 2e-06
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 3 PSGAGKTTLLAALNKRVKGL---VQGEILLNGCPIS-RTVMSRISGYVAQQDFLIEELTV 58
PSG GKTT+L + V GL +G+I ++G ++ R++ R V Q L +++
Sbjct: 40 PSGCGKTTVL----RLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95
Query: 59 LEHLQF---MAKLTMDRRTTWLELNKTITRVMENL------GINHRRQVQISGLSGGQRK 109
E++ + M + + R RV E L G R QI SGGQ++
Sbjct: 96 GENVGYGLKMLGVPKEERK---------QRVKEALELVDLAGFEDRYVDQI---SGGQQQ 143
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDS 135
R+ALA L+ +P++L DEP + LD+
Sbjct: 144 RVALARALILKPKVLLFDEPLSNLDA 169
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 46.5 bits (111), Expect = 2e-06
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
SGGQR+R+A+A L+ +P ++ DEP + LD V+NL+ L
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 46.2 bits (109), Expect = 3e-06
Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 63/195 (32%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL-----VQGEIL----------LNGCPISRTV------- 38
+ PSG GK+TLL N R+ L V+G +L +N + R V
Sbjct: 52 IGPSGCGKSTLLRCFN-RMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110
Query: 39 -------------MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITR 85
R +GY D L+E+ ++ R W E
Sbjct: 111 NPFPKSIYENIAFAPRANGYKGNLDELVED-------------SLRRAAIWEE------- 150
Query: 86 VMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLL 145
+ + + + + LSGGQ++RL +A + +P +L DEP + LD S V L
Sbjct: 151 ------VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC 204
Query: 146 KQLACESRIVICAIH 160
+L E +I H
Sbjct: 205 LELK-EQYTIIMVTH 218
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 46.3 bits (110), Expect = 4e-06
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 97 QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+ QI LSGG ++++ + LLT+P+IL DEPT G+D + + L+ +LA + + +I
Sbjct: 386 RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
Score = 35.5 bits (82), Expect = 0.014
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 30/195 (15%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPI----SRTVMSRISGYVAQQDFLI 53
M +GAGK+TLL L G+ Q G IL G I S+ + V Q+ L+
Sbjct: 30 MGENGAGKSTLLKCLF----GIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85
Query: 54 EELTVLEHL---------QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
+ +V++++ F+ + M R T + + L I+ + +++ LS
Sbjct: 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK---------AIFDELDIDIDPRAKVATLS 136
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
Q + + +A +I+ DEPT+ L N++ ++++L E I I
Sbjct: 137 VSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIVYISHKME 195
Query: 165 GVFEKFDTVSLLAHG 179
+F+ D +++L G
Sbjct: 196 EIFQLCDEITILRDG 210
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 44.8 bits (107), Expect = 4e-06
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGG+++RLA A LL +P+ +F DE T+ LD S + + LLK+L VI H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI---TVISVGHRP 148
Query: 163 T 163
+
Sbjct: 149 S 149
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 45.3 bits (108), Expect = 5e-06
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
SGG ++RL +A L+T P+++F DEPT GLD
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 45.4 bits (108), Expect = 5e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
LSGGQ +R+A+A L EP++L DEPT GLD
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 45.3 bits (107), Expect = 5e-06
Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 22/169 (13%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR------TVMSRISGYVAQQDFLIE 54
SGAGK+TLL K + G+ + G+I +G I+R + R G + Q L+
Sbjct: 37 SGAGKSTLL----KLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
Query: 55 ELTVLEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
+ TV +++ +A + D ++ + ++ ++ +G+ + + LSGG+++R+
Sbjct: 93 DRTVYDNVAIPLIIAGASGD------DIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRV 146
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+A ++ +P +L DEPT LD + ++ L ++ V+ A H
Sbjct: 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 45.1 bits (107), Expect = 6e-06
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
LSGGQ++R+A+A L P+ + DEPT LD VVN +K+L + I I I
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 201
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 45.4 bits (108), Expect = 6e-06
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 46/159 (28%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA---QQDFL-------- 52
SG+GK+T+ A L R + +GEILL+G + ++ + VA Q L
Sbjct: 378 SGSGKSTI-ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN 436
Query: 53 -------------IEELTVLEH-LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV 98
IEE + + + F+ K+ N T + EN G+
Sbjct: 437 IAYARTEQYSREQIEEAARMAYAMDFINKMD----------NGLDTVIGEN-GVL----- 480
Query: 99 QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
LSGGQR+R+A+A LL + IL DE T+ LD+ S
Sbjct: 481 ----LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 45.1 bits (107), Expect = 7e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+GLSGGQ++RL +A + P+++ DEP + LD + V L+ +L IVI
Sbjct: 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217
Score = 27.4 bits (61), Expect = 4.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 3 PSGAGKTTLLAALNK---RVKGL-VQGEILLNG 31
PSG GK+T L LN+ + G V G+I L+G
Sbjct: 53 PSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 45.1 bits (107), Expect = 7e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
SGG R+R+ +A+ LL P++L DEPTT LD ++ LL +L E I I
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI 218
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 45.1 bits (107), Expect = 8e-06
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 12/184 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLE 60
PSG+GK+T+ AAL + + G++LL+G P+ + + VA Q+ ++ +V E
Sbjct: 515 PSGSGKSTV-AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573
Query: 61 HLQF-MAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
++ + + + + +ME G + + S LSGGQ++R+A+A L+
Sbjct: 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ-PTSGVFEKFDTVSLLA 177
+P++L DE T+ LD+ + + SR V+ H+ T E+ D + +L
Sbjct: 634 RKPRVLILDEATSALDAECEQLLQESRSR---ASRTVLLIAHRLST---VERADQILVLK 687
Query: 178 HGGL 181
G +
Sbjct: 688 KGSV 691
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 44.7 bits (106), Expect = 1e-05
Identities = 46/177 (25%), Positives = 91/177 (51%), Gaps = 34/177 (19%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVM----SRISGYVAQQDFLIEELTV 58
P+G+GK+TLL+ L +R + +G+I + P+++ + SR++ V+Q FL + TV
Sbjct: 349 PTGSGKSTLLS-LIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA-VVSQTPFLFSD-TV 405
Query: 59 L------------EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LS 104
+ ++ +A+L ++ I R+ + + +V G LS
Sbjct: 406 ANNIALGRPDATQQEIEHVARLA--------SVHDDILRLPQG----YDTEVGERGVMLS 453
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
GGQ++R+++A LL +IL D+ + +D + + +++ L+Q E R VI + H+
Sbjct: 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHR 509
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 44.3 bits (105), Expect = 1e-05
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 68 LTMDRRTTWLEL---NKTITRVMENLGI--NHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
LT +RR W++ N + R L I NH Q LSGG ++++ +A L PQ
Sbjct: 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ-AARTLSGGNQQKVLIAKCLEASPQ 423
Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLA 149
+L DEPT G+D + N++ L++ +A
Sbjct: 424 LLIVDEPTRGVDVSARNDIYQLIRSIA 450
Score = 33.9 bits (78), Expect = 0.039
Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGY----VAQQDFLIEELT 57
GAGK+TL+ K + G+V G + + G P +R ++ V Q+ L L+
Sbjct: 47 GAGKSTLM----KIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
V E++ F L + + + + +++ LG L R+ + + L
Sbjct: 103 VKENILF--GLPKRQASM-----QKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL 155
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+ + +IL DEPT L + + +++L
Sbjct: 156 MRDSRILILDEPTASLTPAETERLFSRIREL 186
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 43.6 bits (103), Expect = 2e-05
Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 25/137 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEEL-TV 58
P+G GKTT + L +K G+I + +S + + + G V +D L
Sbjct: 33 PNGIGKTTFIKMLAGVLKPDE-GDIEIELDTVSYKPQYIKADYEGTV--RDLLSSITKDF 89
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
H F T + + L I ++ LSGG+ +R+A+A L
Sbjct: 90 YTHPYF------------------KTEIAKPLQIEQILDREVPELSGGELQRVAIAACLS 131
Query: 119 TEPQILFCDEPTTGLDS 135
+ I DEP+ LD
Sbjct: 132 KDADIYLLDEPSAYLDV 148
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 44.2 bits (105), Expect = 2e-05
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 35/152 (23%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNG---CPISRTVMSRISGYVAQQDFL----IEE 55
P+GAGK+TL+ L +RV G IL++G ++R + R V Q L IE+
Sbjct: 369 PTGAGKSTLINLL-QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427
Query: 56 -LTV------LEHLQFMAKLT-----MDRRTTWLELNKTITRVMENLGINHRRQVQISGL 103
+ V E ++ A+ ++R+ + T V E + L
Sbjct: 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD-----TVVGE----------RGRQL 472
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135
SGG+R+RLA+A LL +P IL DE T+ LD
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALDV 504
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 43.6 bits (102), Expect = 2e-05
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 49 QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
L L++L F+ + R L+L + R+ + ++ I G+S G +
Sbjct: 136 LASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTK 195
Query: 109 KRLALAVQLLT---EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
+ LAL + LL+ + +L DEP GL +V LLK+L+ + +I H P
Sbjct: 196 RLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 43.4 bits (103), Expect = 2e-05
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 23/195 (11%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEH 61
GAGK+TLL K + G+ + G++ + G +++ + ELT E+
Sbjct: 63 GAGKSTLL----KLIAGIYKPTSGKVKVTG---------KVAPLIELGAGFDPELTGREN 109
Query: 62 LQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
+ L + R+ E+++ + ++E + + S G RLA +V E
Sbjct: 110 IYLRGLILGLTRK----EIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVE 165
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
P IL DE D+ + L +L +++ ++ H + + D L HG
Sbjct: 166 PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQ 224
Query: 181 LLAYHGQVSKVLKHF 195
+ G +V+ +
Sbjct: 225 IRME-GSPEEVIPAY 238
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 43.4 bits (102), Expect = 2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 77 LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSY 136
+E+ K + R + +G+ R LSGGQ + +ALA L EP+ L DE T+ LD
Sbjct: 111 IEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 137 SANNVVNLLKQLACESRIVICAIH 160
S V+ +K+L + + ++ H
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITH 194
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 44.2 bits (104), Expect = 2e-05
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
G GK++LL+AL + V+G + + G YV QQ + I+ ++ E++
Sbjct: 672 QVGCGKSSLLSALLAEMDK-VEGHVHMKGS----------VAYVPQQAW-IQNDSLRENI 719
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQLLTE 120
F L LE + +E L R ++ G LSGGQ++R++LA + +
Sbjct: 720 LFGKALNEKYYQQVLEACALLPD-LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778
Query: 121 PQILFCDEPTTGLDSYSA----NNVVNLLKQLACESRIVI 156
I D+P + +D++ +V+ L ++RI++
Sbjct: 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV 818
Score = 35.3 bits (81), Expect = 0.016
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS--RISGYVAQQDFLIEELTVLEH 61
+GAGK++L L R+ +GEI+++G I++ + R + QD ++ ++ +
Sbjct: 1321 TGAGKSSLTLGLF-RINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN 1379
Query: 62 LQFMAKLTMDRRTTWLELN--KTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
L ++ + + LEL KT + + ++H LS GQR+ + LA LL
Sbjct: 1380 LDPFSQYSDEEVWWALELAHLKTFVSALPD-KLDHECAEGGENLSVGQRQLVCLARALLR 1438
Query: 120 EPQILFCDEPTTGLD 134
+ +IL DE T +D
Sbjct: 1439 KTKILVLDEATAAVD 1453
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 43.4 bits (103), Expect = 2e-05
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE-SRIVICAIHQ 161
LSGGQ++R+A+A L P+I+ DE T+ LD + ++ L + +I H
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202
Query: 162 PTSGVFEKFDTVSLLAHGGLLA 183
+ D V + + G L+A
Sbjct: 203 MDEAI--LADKVIVFSEGKLIA 222
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 43.1 bits (102), Expect = 3e-05
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 5 GAGKTTLLAALNKRVKGLV---QGEILLNGCPIS-RTV--MSRISGYVAQQ-DFLIEELT 57
G+GK+TL LN GL+ G I + G +S TV + R G V Q D T
Sbjct: 43 GSGKSTLAKLLN----GLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98
Query: 58 VLEHLQF------MAKLTMDRRTTWLELNKTITRV-MENLGIN--HRRQVQISGLSGGQR 108
V + + F + + M R + +V ME+ HR LSGGQ+
Sbjct: 99 VQDDVAFGLENIGVPREEMVERVDQ-----ALRQVGMEDFLNREPHR-------LSGGQK 146
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
+R+A+A L +P I+ DE T+ LD V+ ++QL + I + +I
Sbjct: 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSI 197
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 42.4 bits (100), Expect = 4e-05
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 24/161 (14%)
Query: 3 PSGAGKTTLLAAL--NKRVKG---LV--QGEI--LLNGCPISRTVMS---RISGYVAQQD 50
PSG+GK+TLL +L N LV +GE L+ P R V+ GYV+Q
Sbjct: 45 PSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP--REVLEVRRTTIGYVSQ-- 100
Query: 51 FL--IEELTVLEHL-QFMAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGG 106
FL I ++ L+ + + + + R + +TR L + R + + SGG
Sbjct: 101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTR----LNLPERLWSLAPATFSGG 156
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
+++R+ +A + + IL DEPT LD+ + VV L+++
Sbjct: 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 43.4 bits (102), Expect = 4e-05
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR---TVMSRISGYVAQQDFLIEELTVLE 60
+GAGK+++L AL + V+ L +G I+++ C +++ T + R+ + Q L
Sbjct: 1271 TGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329
Query: 61 HLQFMAKLTMDRRTTWLELNKT-ITRVMENLGINHRRQVQISG--LSGGQRKRLALAVQL 117
F D W L + I V++ +V G S GQR+ L+LA L
Sbjct: 1330 IDPFSEHNDAD---LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386
Query: 118 LTEPQILFCDEPTTGLD 134
L +IL DE T +D
Sbjct: 1387 LRRSKILVLDEATASVD 1403
Score = 35.0 bits (80), Expect = 0.026
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLEH 61
+G GKT+L++A+ L + T I G VA Q I TV E+
Sbjct: 652 TGEGKTSLISAM-------------LGELSHAETSSVVIRGSVAYVPQVSWIFNATVREN 698
Query: 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINH------RRQVQISGLSGGQRKRLALAV 115
+ F + +R W ++ T + +L R V ISG GQ++R+++A
Sbjct: 699 ILFGSDFESER--YWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG---GQKQRVSMAR 753
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVI 156
+ + I D+P + LD++ A+ V + + +L ++R+++
Sbjct: 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV 796
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 42.7 bits (100), Expect = 5e-05
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGGQ++R+ALA + + L DEPT GLD + +NL ++L E + I +
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 163 TSGVFEKFDTVSLLAHGGLL 182
V D V ++ G ++
Sbjct: 211 MDQVLRIADEVIVMHEGKVI 230
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 42.0 bits (99), Expect = 6e-05
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 3 PSGAGKTTLLAAL-------NKRVKGLVQGEIL-LNGCPISRTVMSRIS--GYVAQQDFL 52
PSGAGK+TLL +L + R+ +G + L + R GYV+Q FL
Sbjct: 42 PSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ--FL 99
Query: 53 --IEELTVLEHL-QFMAKLTMDRRTTWLELNKTITRVMENLGINHRR-QVQISGLSGGQR 108
I ++ LE + + + + + R + + R L I R + + SGG++
Sbjct: 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLAR----LNIPERLWHLPPATFSGGEQ 155
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
+R+ +A + + IL DEPT LD+ + VV L+ + +I H
Sbjct: 156 QRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 42.3 bits (100), Expect = 7e-05
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 96 RQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
+ I LSGG ++++A+A L+T P++L DEPT G+D
Sbjct: 389 MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
Score = 38.1 bits (89), Expect = 0.002
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS----RTVMSRISGYVAQQDFLI 53
+ +GAGK+T++ L G+ G IL G ++ ++ G + Q+ LI
Sbjct: 36 VGENGAGKSTMMKVLT----GIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLI 91
Query: 54 EELTVLEHLQFMAKLTMDR--RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
+LT+ E++ F+ + ++R R W ++ +++ L + + LS G+++ +
Sbjct: 92 PQLTIAENI-FLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150
Query: 112 ALAVQLLTEPQILFCDEPTTGL---DSYSANNVVNLLKQLACESRIVICAIHQPTSGVFE 168
+A L E +++ DEPT L ++ S V+ LK I I +FE
Sbjct: 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG----IVYISHRLKEIFE 206
Query: 169 KFDTVSLLAHGGLLA 183
D V++ G +A
Sbjct: 207 ICDDVTVFRDGQFIA 221
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 42.1 bits (99), Expect = 7e-05
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 48/144 (33%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRI-SGY------VA 47
G+GK+TL L GL Q GEILL+G P+S R + S + S Y +
Sbjct: 359 GSGKSTLAMLLT----GLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414
Query: 48 QQDFLIEELTV--LEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
+ +L L+ L+ K + D R + L+ LS
Sbjct: 415 PEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLK------------------------LS 450
Query: 105 GGQRKRLALAVQLLTEPQILFCDE 128
GQ+KRLAL + LL E IL DE
Sbjct: 451 TGQKKRLALLLALLEERDILVLDE 474
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 42.1 bits (99), Expect = 8e-05
Identities = 38/170 (22%), Positives = 84/170 (49%), Gaps = 19/170 (11%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-----GYVAQQDFLIEEL 56
GAGK+TL+ L+ G+ + G I +N ++ + +++ G + Q+ +I+EL
Sbjct: 41 GAGKSTLMKVLS----GIHEPTKGTITINNINYNK-LDHKLAAQLGIGIIYQELSVIDEL 95
Query: 57 TVLEHLQFMAKLTMDRR-----TTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
TVLE+L ++ + + W E+ ++ +G+ +++ LS ++ L
Sbjct: 96 TVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
+A L+ + +++ DEPT+ L + + + ++ QL E ++ H+
Sbjct: 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204
Score = 40.2 bits (94), Expect = 3e-04
Identities = 16/57 (28%), Positives = 37/57 (64%)
Query: 100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
I+ LSGG ++++ ++ L P+++ DEPT G+D + + +++QLA + ++++
Sbjct: 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 41.4 bits (97), Expect = 8e-05
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 26/169 (15%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
+G GK++LL + + G++Q G I C I+ + Y+ L E+TV E
Sbjct: 35 NGCGKSSLL----RMIAGIMQPSSGNIYYKNCNINN-IAKPYCTYIGHNLGLKLEMTVFE 89
Query: 61 HLQFMAKL-----TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
+L+F +++ T+ + +L+ + + LS G +K +A+A
Sbjct: 90 NLKFWSEIYNSAETLYAAIHYFKLHDLLDE-------------KCYSLSSGMQKIVAIAR 136
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
+ + + DE T L + + + NL+ A IV+ + H +S
Sbjct: 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 41.5 bits (97), Expect = 8e-05
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 5 GAGKTTLLAAL---NKRVKGLVQGEILLNGCPISRTVMSRISG---YVAQQDFLIEELTV 58
G GK++LL A+ + ++G V P SR Y AQ+ +L+ TV
Sbjct: 37 GCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA-TV 95
Query: 59 LEHLQFMAKLTMDRRTTWLE---LNKTITRVMENLGINHRRQVQIS----GLSGGQRKRL 111
E++ F + R + L I + Q +I LSGGQR+R+
Sbjct: 96 EENITFGSPFNKQRYKAVTDACSLQPDIDL------LPFGDQTEIGERGINLSGGQRQRI 149
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICAIHQ 161
+A L I+F D+P + LD + +++++ +LK L + R ++ H+
Sbjct: 150 CVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 41.8 bits (98), Expect = 1e-04
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
LSGG R+R+ +A+ L P +L DEPTT LD ++ L+K L E
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217
Score = 36.4 bits (84), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
SGGQR+R+ +A L P+++ DE + LD ++NLL L
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 40.9 bits (97), Expect = 1e-04
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
LS G+R+ + +A L ++L DEPT L + ++++L
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129
Score = 27.4 bits (62), Expect = 3.8
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 7/34 (20%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS 35
GAGK+TL+ L+ GL + GEIL++G +S
Sbjct: 36 GAGKSTLMKILS----GLYKPDSGEILVDGKEVS 65
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 40.6 bits (96), Expect = 1e-04
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 5 GAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEH 61
GAGK+TLL + + G+ G + TV R+S + ELT E+
Sbjct: 58 GAGKSTLL----RLLAGIYPPDSGTV---------TVRGRVSSLLGLGGGFNPELTGREN 104
Query: 62 LQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
+ +L + R+ E+++ I ++E + + + S G + RLA A+ E
Sbjct: 105 IYLNGRLLGLSRK----EIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALE 160
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
P IL DE D+ L++L + + VI H P+S ++ +L+ G
Sbjct: 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS--IKRLCDRALVLEKG 218
Query: 181 LLAYHG 186
+ + G
Sbjct: 219 KIRFDG 224
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
LSGG+++R+A+A +L P IL DE T+ LD+++ + L++++
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 40.8 bits (96), Expect = 2e-04
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 38/167 (22%)
Query: 4 SGAGKT-TLLAALNKRVKGL--VQGEILLNGCPIS------RTVMSRISGYVAQQDFLIE 54
SG+GK+ T AAL G+ G +LL+G P++ R +
Sbjct: 38 SGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA--------------- 82
Query: 55 ELTVLEHLQ--FMAKLTMDR--RTTWLELNK-----TITRVMENLGINHRRQVQIS---G 102
T++++ + F TM R T L L K T+T +E +G+ + +V
Sbjct: 83 --TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFE 140
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
+SGG +R+ +A+ LL E + DEPTT LD + +++LL+ +
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV 187
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 40.8 bits (96), Expect = 2e-04
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 85 RVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135
+ + +G+ R + LSGGQ++R+ALA L+ P +L DEP LD+
Sbjct: 116 QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 40.9 bits (96), Expect = 2e-04
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEI-LLNGCPISRTVMSRISGYVAQQ--DFLIEELTVLEH 61
GAGK+TL+ L + + GEI L G + GY AQ +FL + + L+H
Sbjct: 348 GAGKSTLIKLLAGELAPV-SGEIGLAKGIKL---------GYFAQHQLEFLRADESPLQH 397
Query: 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAVQLLTE 120
L +A EL + + + G + + + SGG++ RL LA+ +
Sbjct: 398 LARLAPQ---------ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448
Query: 121 PQILFCDEPTTGLD 134
P +L DEPT LD
Sbjct: 449 PNLLLLDEPTNHLD 462
Score = 35.5 bits (82), Expect = 0.015
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 100 ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
+S SGG R RL LA L+ +L DEPT LD
Sbjct: 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 40.6 bits (95), Expect = 3e-04
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
SGG R R+ALA L EP +L DEPT LD
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
Score = 36.8 bits (85), Expect = 0.005
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
LSGGQ+ R+A A +P IL DEP+ LD
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 39.8 bits (93), Expect = 3e-04
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 4 SGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQ--QD---FLIEE 55
+G+GK+TL K + G+++ GEIL+N P+ S S + QD L
Sbjct: 48 NGSGKSTLA----KMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI--NHRRQVQISGLSGGQRKRLAL 113
L + + L F +L D + K I + +G+ +H L+ GQ++R+AL
Sbjct: 104 LRIGQILDFPLRLNTDLEPE--QRRKQIFETLRMVGLLPDHA-NYYPHMLAPGQKQRVAL 160
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
A L+ P+I+ DE LD + ++NL+ +L + I + Q + D V
Sbjct: 161 ARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQV 220
Query: 174 SLLAHGGLLAYHGQVSKVLKH 194
L+ H G + G + VL
Sbjct: 221 -LVMHEGEVVERGSTADVLAS 240
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 39.7 bits (93), Expect = 5e-04
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
LSGG +R+ +A+ + P++L DEPTT LD ++ LL +L + + + I
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 163 TSGVFEKFDTVSLLAHGGLLAYHGQV 188
+ V E AH ++ Y GQV
Sbjct: 214 LALVAEA-------AHKIIVMYAGQV 232
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 39.8 bits (93), Expect = 5e-04
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 100 ISGLSGGQRKRLALAVQLLT---EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+S LSGG+ +RL LA +LL +P + DEPTTGL ++ ++ +L+ L + V+
Sbjct: 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866
Query: 157 CAIH 160
H
Sbjct: 867 IIEH 870
Score = 30.2 bits (68), Expect = 0.84
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 100 ISGLSGGQRKRLALAVQLLTE----PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
++ LSGG+++R ALA L E IL DEP+ GL + ++N++K+L + V
Sbjct: 474 LATLSGGEQERTALAKHLGAELIGITYIL--DEPSIGLHPQDTHKLINVIKKLRDQGNTV 531
Query: 156 ICAIH 160
+ H
Sbjct: 532 LLVEH 536
Score = 27.1 bits (60), Expect = 7.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 99 QISGLSGGQRKRLALAVQL---LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
+ LS G+ RL LA ++ LT+ L ++P +GL A ++ L+K+L + V
Sbjct: 1384 EQDTLSDGEHYRLHLAKKISSNLTDIIYLL-EDPLSGLHPQDAPTLLQLIKELVTNNNTV 1442
Query: 156 I 156
I
Sbjct: 1443 I 1443
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 38.9 bits (91), Expect = 6e-04
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 28/140 (20%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTVL 59
+GAGK+TL+ AL + ++ +G+I ++G IS + S ++ + QD + T+
Sbjct: 43 TGAGKSTLILALFRFLEA-EEGKIEIDGIDISTIPLEDLRSSLT--IIPQDPTLFSGTI- 98
Query: 60 EHLQFMAKLTMDR--RTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
+ +D + E+ + RV E G+N LS GQR+ L LA L
Sbjct: 99 -------RSNLDPFDEYSDEEIYGAL-RVSEG-GLN---------LSQGQRQLLCLARAL 140
Query: 118 LTEPQILFCDEPTTGLDSYS 137
L P++L DE T +D +
Sbjct: 141 LKRPRVLVLDEATASIDYAT 160
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 39.2 bits (92), Expect = 8e-04
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 88 ENLGINH---RRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNL 144
+ GI RR +S +G RK L L L++EP +L DEP GLD S + L
Sbjct: 121 QQFGITALLDRRFKYLS--TGETRKTL-LCQALMSEPDLLILDEPFDGLDVASRQQLAEL 177
Query: 145 LKQLA 149
L L
Sbjct: 178 LASLH 182
Score = 30.4 bits (69), Expect = 0.65
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 102 GLSGGQRKRLALAVQ-LLTEPQILFCDEPTTGLD 134
LS GQ +RLAL V+ L+ P +L DEP GLD
Sbjct: 401 SLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 39.0 bits (91), Expect = 0.001
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 37/171 (21%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQ 63
+G+GK+TLL +L L Q EI R R YV QQ + I TV ++
Sbjct: 695 TGSGKSTLLQSL------LSQFEI-----SEGRVWAERSIAYVPQQAW-IMNATVRGNIL 742
Query: 64 FM-----AKLTMDRRTTWLELNKTI------TRVMENLGINHRRQVQISGLSGGQRKRLA 112
F A+L R + LE + T + E G+N LSGGQ+ R++
Sbjct: 743 FFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEK-GVN---------LSGGQKARVS 792
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICAIHQ 161
LA + + D+P + LD++ VV L LA ++R++ A HQ
Sbjct: 793 LARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL--ATHQ 841
Score = 28.2 bits (63), Expect = 3.3
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRISGYVAQQDFLIEEL 56
+G+GK+TLL + V+ + GEI +NG I R S I QD ++ +
Sbjct: 1345 TGSGKSTLLLTFMRMVE-VCGGEIRVNGREIGAYGLRELRRQFSMIP-----QDPVLFDG 1398
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVM-ENLGINHRRQVQISGLSGGQRKRLALAV 115
TV +++ + + LEL RV E+ GI+ R S S GQR+ + +A
Sbjct: 1399 TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 116 QLLTEPQ--ILFCDEPTTGLD 134
LL + IL DE T +D
Sbjct: 1459 ALLKKGSGFILM-DEATANID 1478
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 38.4 bits (89), Expect = 0.001
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCP---ISRTVMSRISGYVAQQDFLIEELTVLE 60
+G+GK+TLL+AL + + +GEI ++G ++ + G + Q+ F+
Sbjct: 1254 TGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFI-------- 1303
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQ--------VQISG---LSGGQRK 109
+ +D W + + I +V E +G+ + V + G LS G ++
Sbjct: 1304 -FSGTFRKNLDPYEQWSD--EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
+ LA +L++ +IL DEP+ LD + + LKQ +++
Sbjct: 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408
Score = 36.0 bits (83), Expect = 0.010
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICAIH 160
LSGGQR R++LA + + + D P T LD + + L K ++ ++RI++
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV---- 604
Query: 161 QPTSGV--FEKFDTVSLLAHGGLLAYHGQVSKV 191
TS + +K D + LL H G+ ++G S++
Sbjct: 605 --TSKLEHLKKADKI-LLLHEGVCYFYGTFSEL 634
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 38.4 bits (90), Expect = 0.002
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 35/138 (25%)
Query: 5 GAGKTT---LLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-----QDF-LIEE 55
G+GK+T LL L + G EILL+G P++ + Y DF L ++
Sbjct: 359 GSGKSTLAMLLTGLYQPQSG----EILLDGKPVT---AEQPEDYRKLFSAVFTDFHLFDQ 411
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ---ISG--LSGGQRKR 110
L E L WLE L + H+ +++ IS LS GQ+KR
Sbjct: 412 LLGPEGKPANPALV----EKWLE----------RLKMAHKLELEDGRISNLKLSKGQKKR 457
Query: 111 LALAVQLLTEPQILFCDE 128
LAL + L E IL DE
Sbjct: 458 LALLLALAEERDILLLDE 475
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 37.8 bits (88), Expect = 0.002
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
L+ GQ++RL LA L+ P+++ DE LD + ++NL+ +L
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 37.2 bits (86), Expect = 0.002
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 99 QISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR 153
Q LSGG+ +R+A+A LL DEP+ LD N +++L+ E +
Sbjct: 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK 122
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 37.5 bits (88), Expect = 0.002
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 37/149 (24%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTV-----------MSRISGYVAQ 48
PSG GK+TLL + V GL + GEI + G R V M V Q
Sbjct: 38 PSGCGKSTLL----RMVAGLERITSGEIWIGG----RVVNELEPADRDIAM------VFQ 83
Query: 49 QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGIN---HRRQVQISGLSG 105
L ++V E++ + K+ R E+ + + L + R+ + LSG
Sbjct: 84 NYALYPHMSVRENMAYGLKI---RGMPKAEIEERVAEAARILELEPLLDRKPRE---LSG 137
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLD 134
GQR+R+A+ ++ EP + DEP + LD
Sbjct: 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 37.6 bits (87), Expect = 0.003
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 29/137 (21%)
Query: 4 SGAGKTTLLAALNKRVKGLV---QGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELT 57
+G GK+TL K GL +GEILL+G +S R + + L ++L
Sbjct: 377 NGCGKSTLA----KLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI 432
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ------ISGLSGGQRKRL 111
+ + ++D +L+ L I + +++ + LS GQ+KRL
Sbjct: 433 GPDEGE---HASLDNAQQYLQ----------RLEIADKVKIEDGGFSTTTALSTGQQKRL 479
Query: 112 ALAVQLLTEPQILFCDE 128
AL L + IL DE
Sbjct: 480 ALICAWLEDRPILLFDE 496
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 37.2 bits (87), Expect = 0.003
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 103 LSGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
SGG+ RL LA++ + L DE TG+ A V LK+L+ S V+C
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCI 229
Query: 159 IHQP 162
H P
Sbjct: 230 THLP 233
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 36.5 bits (85), Expect = 0.003
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 89 NLGINHRRQVQI-SGLSGGQRKRLALAVQLL--TEPQILFCDEPTTGLDSYSANNVVNLL 145
++G+ + Q S LSGG+ +R+ LA +L + DEP+TGL N ++ ++
Sbjct: 73 DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132
Query: 146 KQLACESRIVICAIHQPT 163
K L VI H
Sbjct: 133 KGLIDLGNTVILIEHNLD 150
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 36.6 bits (84), Expect = 0.005
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
LSGGQ++R+A+A + P+I+ DE T+ LD ++ ++ ++ + ++ + +I
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSI 197
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 36.3 bits (84), Expect = 0.005
Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 27/193 (13%)
Query: 4 SGAGKTTL---LAALNKRVKGLV--QGEILLNGCPISRTVMSRISGYVAQQDF------- 51
SG GK+TL L L K +G V +G+ L R R V Q
Sbjct: 46 SGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM 105
Query: 52 ----LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQ 107
+I E L HL + + R EL + E+ + Q LSGGQ
Sbjct: 106 TVRQIIGE--PLRHLTSLDESEQKARI--AELLDMVGLRSEDA---DKLPRQ---LSGGQ 155
Query: 108 RKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVF 167
+R+ +A L +P+++ DE + LD ++ LL++L I V
Sbjct: 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLV- 214
Query: 168 EKFDTVSLLAHGG 180
+ F + G
Sbjct: 215 QSFCQRVAVMDKG 227
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 36.2 bits (84), Expect = 0.006
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 77 LELNKTITRVMENL---GINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGL 133
+ + RV E L G+ ++ + + LSGGQ++R+A+A + P+I+ DE T+ L
Sbjct: 112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML 171
Query: 134 D 134
D
Sbjct: 172 D 172
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 35.8 bits (83), Expect = 0.008
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
LSGGQ +R+ LA L EP++L DE + LD V+ LLK+L
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 35.3 bits (81), Expect = 0.009
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 4 SGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
+GAGKTTLL K + GL+ +GEIL I + + Y Q F+ +
Sbjct: 36 NGAGKTTLL----KLIAGLLNPEKGEILFERQSIKKD----LCTYQKQLCFVGHRSGINP 87
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
+L D + IT + + H LS GQ++++AL +++
Sbjct: 88 YLTLRENCLYDIHFS--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
++ DEP LD S ++ +++ + V+ HQ
Sbjct: 146 AKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 36.3 bits (84), Expect = 0.009
Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 42/153 (27%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPIS-------RTVMSRI-------SGYV--- 46
+GAGK+++L AL R+ L +G IL++GC IS R V+ I SG V
Sbjct: 1274 TGAGKSSMLNALF-RIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332
Query: 47 -----AQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS 101
D + E HL K + R + L L+ ++ EN
Sbjct: 1333 LDPFNEHNDADLWESLERAHL----KDVIRRNS--LGLDAEVSEAGEN------------ 1374
Query: 102 GLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
S GQR+ L+LA LL +IL DE T +D
Sbjct: 1375 -FSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
Score = 28.9 bits (65), Expect = 1.9
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 30/150 (20%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQ 63
+G GKT+L++A+ + +++ G TV YV Q + I TV +++
Sbjct: 652 TGEGKTSLISAMLGELPPRSDASVVIRG-----TV-----AYVPQVSW-IFNATVRDNIL 700
Query: 64 FMAKLTMDRRTTWLELNKTI--TRVMENL----GINH----RRQVQISGLSGGQRKRLAL 113
F + +R + I T + +L G + R V ISG GQ++R+++
Sbjct: 701 FGSPFDPER------YERAIDVTALQHDLDLLPGGDLTEIGERGVNISG---GQKQRVSM 751
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVN 143
A + + + D+P + LD++ V +
Sbjct: 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 34.7 bits (79), Expect = 0.012
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 55/167 (32%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
P G+GKTTL AL + + G I ++G
Sbjct: 10 PPGSGKTTLARALARELGPPGGGVIYIDG------------------------------- 38
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
+ I + + + + + SG R RLALA+ +P
Sbjct: 39 ------------------EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
Query: 123 ILFCDEPTTGLDSYSANNVV------NLLKQLACESRIVICAIHQPT 163
+L DE T+ LD+ ++ LL + ++ VI +
Sbjct: 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 35.0 bits (81), Expect = 0.018
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 103 LSGGQRKRLALAVQLL---TEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
LSGG+ +R+ LA +L T + DEPTTGL ++ +L++L
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL 878
Score = 28.4 bits (64), Expect = 2.7
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 103 LSGGQRKRLALAVQL---LTEPQILFC-DEPTTGLDSYSANNVVNLLKQL 148
LSGG+ +R+ LA Q+ LT +L+ DEP+ GL ++N LK+L
Sbjct: 489 LSGGEAQRIRLATQIGSGLT--GVLYVLDEPSIGLHQRDNRRLINTLKRL 536
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 34.8 bits (80), Expect = 0.020
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
L+ G+ +++ +A+ L +P++L DEPT ++ + + LL +L S I I
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 163 TSGVFEKFDTVSLLAHG 179
+ + D +++L G
Sbjct: 219 LQMISQWADKINVLYCG 235
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 34.9 bits (81), Expect = 0.020
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 103 LSGGQRKRLALAVQLL---TEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
LSGG+ +R+ LA +L T + DEPTTGL ++ +L +L
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871
Score = 29.9 bits (68), Expect = 1.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 99 QISGLSGGQRKRLALAVQL---LTEPQILFC-DEPTTGLDSYSANNVVNLLKQL 148
LSGG+ +R+ LA Q+ LT +L+ DEP+ GL ++ LK+L
Sbjct: 478 SAGTLSGGEAQRIRLATQIGSGLTG--VLYVLDEPSIGLHQRDNERLIETLKRL 529
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 34.4 bits (79), Expect = 0.021
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 21/195 (10%)
Query: 1 MSPSGAGKTTLLAALNKRVK-GLVQGEILLNG------CPISRT----VMS-----RISG 44
M P+G+GK+TL A L R + G + G P R M+ I G
Sbjct: 33 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92
Query: 45 YVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
V+ Q FL L + + L +E + ++ E+L R V + G S
Sbjct: 93 -VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDL---LTRSVNV-GFS 147
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS 164
GG++KR + + EP++ DE +GLD + V + + L R I H
Sbjct: 148 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
Query: 165 GVFEKFDTVSLLAHG 179
+ K D V +L G
Sbjct: 208 LDYIKPDYVHVLYQG 222
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 34.9 bits (81), Expect = 0.021
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 36/143 (25%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ---QDFLIEELTVL 59
+G GKTTLL + LV GE+ + + + + I GY AQ DF +LT+
Sbjct: 353 ENGVGKTTLL-------RTLV-GELEPDSGTVKWSENANI-GYYAQDHAYDFE-NDLTLF 402
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLG--------INHRRQVQISGLSGGQRKRL 111
+ +M++ + ++ R LG I +V LSGG++ R+
Sbjct: 403 D---WMSQWRQEGD------DEQAVRGT--LGRLLFSQDDIKKSVKV----LSGGEKGRM 447
Query: 112 ALAVQLLTEPQILFCDEPTTGLD 134
++ +P +L DEPT +D
Sbjct: 448 LFGKLMMQKPNVLVMDEPTNHMD 470
Score = 29.9 bits (68), Expect = 0.79
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 110 RLALAVQLLTEPQILFCDEPTTGLD 134
R+ LA L + P IL DEPT LD
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLD 187
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 34.5 bits (79), Expect = 0.021
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 24/194 (12%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGCPISR----TVMSRISGYVAQQDFLIEELTVL 59
+G+GK++L A + V + G+I+++G IS+ T+ SR+S + QD ++ ++
Sbjct: 56 TGSGKSSLSLAFFRMVD-IFDGKIVIDGIDISKLPLHTLRSRLS--IILQDPILFSGSIR 112
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQL 117
+L K T DR LE+ + + ++++L G++ S GQR+ LA
Sbjct: 113 FNLDPECKCTDDRLWEALEIAQ-LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTS------------G 165
+ + IL DE T +D + N++ + A R V+ H+ ++ G
Sbjct: 172 VRKSSILIMDEATASID-MATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRG 230
Query: 166 VFEKFDTV-SLLAH 178
+ + DT +LLA
Sbjct: 231 ILVECDTPENLLAQ 244
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.7 bits (80), Expect = 0.022
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 100 ISGLSGGQRK------RLALA--VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE 151
I LSGG+R RLAL+ +Q ++LF DEP LD + +L++L +
Sbjct: 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD 872
Query: 152 SRIVI 156
R +I
Sbjct: 873 GRQII 877
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 34.5 bits (80), Expect = 0.024
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 103 LSGGQRKRLALAVQLL---TEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
LSGG+ +R+ LA +L T + DEPTTGL + ++ +L++L
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 34.1 bits (78), Expect = 0.028
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICAIH 160
LSGGQR R++LA + + + D P LD ++ + + K +A ++RI++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV---- 215
Query: 161 QPTSGV--FEKFDTVSLLAHGGLLAYHGQVSKV 191
TS + +K D + L+ H G ++G S++
Sbjct: 216 --TSKMEHLKKADKI-LILHEGSSYFYGTFSEL 245
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 34.1 bits (79), Expect = 0.038
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 104 SGGQRKRLALAVQLLTE-----PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICA 158
SGG+ R+ALA+Q++T P ++F DE G+ +A V LL+QL ES V+C
Sbjct: 432 SGGELSRIALAIQVITARKMETPALIF-DEVDVGISGPTAAVVGKLLRQLG-ESTQVMCV 489
Query: 159 IHQP 162
H P
Sbjct: 490 THLP 493
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 33.3 bits (77), Expect = 0.043
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 103 LSGGQRK------RLALAVQLLTEPQILFCDEPTTGLDS 135
SGG++ RLALA + IL DEPTT LD
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 32.5 bits (75), Expect = 0.061
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1 MSPSGAGKTTLLAALNKR 18
PSG GK+TLL L +
Sbjct: 5 SGPSGVGKSTLLKRLLEE 22
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 31.0 bits (71), Expect = 0.074
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 100 ISGLSGGQRK-------RLALAVQL-----LTEPQILFCDEPTTGLDSYSANNVVNLLKQ 147
LSGG+++ ALA Q P+++F DE LD + +++ LL++
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 32.9 bits (75), Expect = 0.088
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNGC---PISRTVMSRISGYVAQQDFLIEELTVLE 60
+G+GK+TLL+A + + +G+I ++G + + G + Q+ F+
Sbjct: 39 TGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFI-------- 88
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQV--QISG------------LSGG 106
F + ++ I +V E +G+ + V Q G LS G
Sbjct: 89 ---FSGTFRKNLDPYGKWSDEEIWKVAEEVGL---KSVIEQFPGQLDFVLVDGGCVLSHG 142
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
++ + LA +L++ +IL DEP+ LD + + LKQ + +++
Sbjct: 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 33.1 bits (76), Expect = 0.094
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 96 RQVQ-ISGLSGGQRKRLAL----AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLAC 150
+ VQ + +SGG++ AL A+Q DE LD + V L+++ A
Sbjct: 1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG 1126
Query: 151 ESR-IVI 156
E++ IV+
Sbjct: 1127 EAQFIVV 1133
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 32.4 bits (75), Expect = 0.098
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 2 SPSGAGKTTLLAALNKRVKGLV 23
PSGAGK+TL+ AL +R L
Sbjct: 12 GPSGAGKSTLVKALLERDPNLQ 33
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 33.0 bits (75), Expect = 0.11
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 100 ISGLSGGQRKRLALAVQ------LLTEPQILFCDEPTTGLDSYSANNVVNLLK 146
I LSGG++ +A A++ L + +L DEPT LD N+ ++++
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIE 851
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 32.8 bits (75), Expect = 0.11
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 104 SGGQRKRLALAVQLLT----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI 159
SGG+ R+ LA++++ L DE G+ +A + L QL+ E V+C
Sbjct: 442 SGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVT 500
Query: 160 HQP 162
H P
Sbjct: 501 HLP 503
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 31.9 bits (73), Expect = 0.14
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 103 LSGGQRKRLAL----AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
LSGG++ AL A+Q + DE LD + V +++K++A + IVI
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 157 CAIHQPTSGVFEKFD 171
+FE D
Sbjct: 155 ----TLKKEMFENAD 165
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 32.2 bits (74), Expect = 0.16
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 103 LSGGQRKRLALAVQLLT-----EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVIC 157
SGG+ R+ LA++++ P ++F DE TG+ A V L++L+ E V+C
Sbjct: 432 ASGGELSRIMLALKVILSRKDDTPTLIF-DEVDTGISGRVAQAVGKKLRRLS-EHHQVLC 489
Query: 158 AIHQP 162
H P
Sbjct: 490 VTHLP 494
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 31.9 bits (73), Expect = 0.17
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 35/157 (22%)
Query: 1 MSPSGAGKTTLLAALNKRVKG-----LVQGEILLNG---CPISRTVMSR----------- 41
M P+G+GK+TL K + G +++G+IL G + +
Sbjct: 39 MGPNGSGKSTLS----KVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI 94
Query: 42 -ISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR---RQ 97
I G V+ DFL L +F +D LE + I ++ +G++ R
Sbjct: 95 EIPG-VSNADFL--RLAYNSKRKFQGLPELDP----LEFLEIINEKLKLVGMDPSFLSRN 147
Query: 98 VQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
V G SGG++KR + L + ++ DE +GLD
Sbjct: 148 VN-EGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 31.3 bits (72), Expect = 0.18
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 2 SPSGAGKTTLLAALNKRVKGLV 23
PSGAGK+TL+ AL + L
Sbjct: 7 GPSGAGKSTLVKALLEEDPNLK 28
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 30.6 bits (70), Expect = 0.33
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 1 MSPSGAGKTTLLAALNKRVK 20
PSG GK+TL+ AL + K
Sbjct: 10 SGPSGVGKSTLVKALLEDDK 29
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.2 bits (71), Expect = 0.34
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 97 QVQISGLSGGQRK------RLALAVQLLTEPQILFCDEPTTGLD 134
+ ++ LSGG+R RLAL++ L +L DEPT LD
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLD 826
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 30.9 bits (70), Expect = 0.40
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
L+ G+ +++ +A+ L +P++L DEPT ++ + + LL +L
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL 204
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 29.7 bits (67), Expect = 0.74
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 1 MSPSGAGKTTLLAALNKRV 19
M PSG+GK +LLAAL +R
Sbjct: 8 MGPSGSGKDSLLAALRQRE 26
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 29.8 bits (67), Expect = 0.85
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 103 LSGGQRKRLALAVQLLT--EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
LS G + LALA LL+ P +L DEP T L + L++ A S++++
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIV 326
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.7 bits (67), Expect = 1.0
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 100 ISGLSGGQRKRLALAVQLLTEPQIL----FC--DEPTTGLDSYSANNVVNLLKQLACESR 153
+S LSGG++ ALA LL Q F DE LD + V L+K+++ E++
Sbjct: 1064 LSLLSGGEKSLTALA--LLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQ 1121
Query: 154 -IVI 156
IVI
Sbjct: 1122 FIVI 1125
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 29.2 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILL---NGCPISRTVMSRISGYVAQQDFLIEELTVLEH 61
GAGKTT L +R++ +L G PI +I + + + E
Sbjct: 13 GAGKTTQAELLKERLEERGIKVVLTREPGGTPIGE----KIRELLLNGEEKLSPKA--EA 66
Query: 62 LQFMAKLTMDRR 73
L F A DR
Sbjct: 67 LLFAA----DRA 74
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 28.4 bits (63), Expect = 1.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 3 PSGAGKTTLLAALNKR 18
P G+GK+TL L ++
Sbjct: 7 PPGSGKSTLAKKLAEK 22
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 28.6 bits (64), Expect = 1.2
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
G+GKTTL L +R+ +++ NG + +D L + L LE
Sbjct: 6 TPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDEDKLAKLLDKLE 63
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 29.7 bits (68), Expect = 1.2
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 19/57 (33%)
Query: 103 LSGG--QRKRLALAVQLLTEPQ---------ILFCDEPTTGLDSYSANNVVNLLKQL 148
LSGG QR +LA E IL DEPTTGL ++ +L +L
Sbjct: 831 LSGGEAQRVKLA------KELSKRSTGKTLYIL--DEPTTGLHFEDIRKLLEVLHRL 879
>gnl|CDD|234896 PRK01077, PRK01077, cobyrinic acid a,c-diamide synthase;
Validated.
Length = 451
Score = 29.3 bits (67), Expect = 1.4
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 7/27 (25%)
Query: 4 SGAGKTT----LLAALNKRVKGL-VQG 25
SG+GKTT L+ AL +R GL VQ
Sbjct: 13 SGSGKTTVTLGLMRALRRR--GLRVQP 37
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 28.4 bits (64), Expect = 1.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 1 MSPSGAGKTTLLAALN 16
+ SG GKTTL ALN
Sbjct: 7 IGRSGCGKTTLTQALN 22
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 28.3 bits (64), Expect = 1.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 3 PSGAGKTTLLAALNKR 18
GKTTLL AL R
Sbjct: 7 GPSTGKTTLLEALAAR 22
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 28.8 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 97 QVQISGLSGGQRKRLALAVQLLTE-----PQILFCDEPTTGLDSYSANNVVNLLKQLA 149
Q ++ LSGGQ+ +ALA+ + P LF DE LD+ V N++K+L+
Sbjct: 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLF-DEIDAALDAQYRTAVANMIKELS 209
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 28.7 bits (64), Expect = 1.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 4 SGAGKTTLLAALNKR 18
GAGKTTLLAAL +
Sbjct: 18 PGAGKTTLLAALARA 32
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 28.7 bits (65), Expect = 1.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 3 PSGAGKTTLLAAL 15
SG+GKTTL AL
Sbjct: 7 HSGSGKTTLAEAL 19
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 28.5 bits (65), Expect = 2.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEI 27
SG GK+TLL AL + L GEI
Sbjct: 93 QSGVGKSTLLNALLPELV-LATGEI 116
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 28.4 bits (64), Expect = 2.2
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 103 LSGGQRKRLALAVQL---LTEPQILFC-DEPTTGLDSYSANNVVNLLKQL 148
LSGG+ +R+ LA Q+ LT +L+ DEP+ GL + ++ LK+L
Sbjct: 138 LSGGEAQRIRLATQIGSGLTG--VLYVLDEPSIGLHPRDNDRLIETLKRL 185
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 26.4 bits (59), Expect = 2.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 3 PSGAGKTTLLAAL 15
PSG+GK+TL+ A+
Sbjct: 29 PSGSGKSTLIDAI 41
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 27.9 bits (63), Expect = 2.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 1 MSPSGAGKTTLLAALNKRVK 20
P G+GKT L+ + +K
Sbjct: 19 GGPPGSGKTALIEKTLRALK 38
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 27.7 bits (62), Expect = 2.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 1 MSPSGAGKTTLLAALNKRVKG 21
+ PSGAGK TLL A R+ G
Sbjct: 11 VGPSGAGKDTLLDAARARLAG 31
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 28.2 bits (63), Expect = 2.8
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
S G R +L ++ + P IL DE + D A ++ + + +++ + H
Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN-- 202
Query: 164 SGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHFAK 197
G +F T GG L +G++ VL +
Sbjct: 203 LGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEA 236
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 27.5 bits (62), Expect = 3.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 3 PSGAGKTTLLAALNK-------RVKGL----VQGEILLNGCPI-SRTVMS 40
P+G GKTT L A + RV GL ++L I +RT+ S
Sbjct: 26 PAGTGKTTSLKAAREAWEAAGYRVIGLAPTGKAAKVLGEELGIEARTLAS 75
>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit
[Amino acid transport and metabolism].
Length = 163
Score = 27.6 bits (62), Expect = 3.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 38 VMSRISGYVAQQDFLIEELTVLE 60
V+SR++G +++ + IE LTV
Sbjct: 17 VLSRVTGLFSRRGYNIESLTVGP 39
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 27.4 bits (61), Expect = 3.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 3 PSGAGKTTLLAAL 15
SG+GKTTL AL
Sbjct: 23 RSGSGKTTLAGAL 35
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PMID:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 27.3 bits (61), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 1 MSPSGAGKTTLLAALNKRVKG 21
+ PSGAGK TLL R+ G
Sbjct: 7 VGPSGAGKDTLLDYARARLAG 27
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 27.2 bits (61), Expect = 4.2
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 3 PSGAGKTTL-------LAALNKRVKGLVQGEILLNGCPISRTVMSRISG 44
P G GKTTL L + +V G E+ G I ++ SG
Sbjct: 7 PPGVGKTTLVKKVIELLKSEGVKVGGFYTPEVREGGRRIGFDIVDLASG 55
>gnl|CDD|225461 COG2909, MalT, ATP-dependent transcriptional regulator
[Transcription].
Length = 894
Score = 27.8 bits (62), Expect = 4.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 2 SPSGAGKTTLLAALNKRVKGLVQ 24
+P+G GKTTLLA +
Sbjct: 44 APAGFGKTTLLAQWRELAADGAA 66
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 27.0 bits (60), Expect = 4.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 2 SPSGAGKTTLLAALNKRVKG 21
P +GKTTL+ L K +K
Sbjct: 6 GPKNSGKTTLIERLVKALKA 25
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 27.2 bits (61), Expect = 4.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMS-RISGYVAQQDFLIEELT 57
P GAGK+TL L K++ GL G+IL RT + I Y+ + + + +E+
Sbjct: 8 PPGAGKSTLAKKLAKKL-GLPHLDTGDILRAAIA-ERTELGEEIKKYIDKGELVPDEIV 64
>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin. Glutaredoxins are
thioltransferases (disulfide reductases) which utilize
glutathione and NADPH as cofactors. Oxidized
glutathione is regenerated by glutathione reductase.
Together these components compose the glutathione
system. Glutaredoxins utilize the CXXC motif common to
thioredoxins and are involved in multiple cellular
processes including protection from redox stress,
reduction of critical enzymes such as ribonucleotide
reductase and the generation of reduced sulfur for iron
sulfur cluster formation. Glutaredoxins are capable of
reduction of mixed disulfides of glutathione as well as
the formation of glutathione mixed disulfides. This
model represents eukaryotic glutaredoxins and includes
sequences from fungi, plants and metazoans as well as
viruses.
Length = 84
Score = 26.1 bits (58), Expect = 4.7
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 32 CPISRTVMSRISGYVAQQDFLIEELTVLEH---LQFMAKLTMDRRT 74
CP + ++ + + + EL L + +Q + +RT
Sbjct: 9 CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRT 54
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 27.8 bits (63), Expect = 4.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 1 MSPSGAGKTTLLAAL 15
+ SGAGKTTL A+
Sbjct: 1 VGHSGAGKTTLTEAI 15
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 27.1 bits (60), Expect = 5.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 3 PSGAGKTTLLAAL 15
P+G+GKTT+L A+
Sbjct: 27 PNGSGKTTILDAI 39
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 26.8 bits (60), Expect = 5.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 99 QISGLSGGQRKRLALAVQL-LTEP---------QILFCDEPTTGLDSYSANNVVNLLKQL 148
+S LSGG+ +L++ L L+E + LF DE LD + V L+ +
Sbjct: 120 PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI 179
Query: 149 ACESRIV 155
E+R+V
Sbjct: 180 RTENRMV 186
>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit.
Acetolactate synthase is a heterodimeric thiamine
pyrophosphate enzyme with large and small subunits. One
of the three isozymes in E. coli K12 contains a
frameshift in the large subunit gene and is not
expressed. acetohydroxyacid synthase is a synonym
[Amino acid biosynthesis, Pyruvate family].
Length = 157
Score = 26.6 bits (59), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 38 VMSRISGYVAQQDFLIEELTV 58
V+SR++G ++ F IE LTV
Sbjct: 14 VLSRVAGLFTRRGFNIESLTV 34
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 26.9 bits (60), Expect = 6.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 5 GAGKTTLLAALNKRV 19
G+GKTTLL+AL V
Sbjct: 188 GSGKTTLLSALLALV 202
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 26.5 bits (59), Expect = 7.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 4 SGAGKTTLLAALNKRVK 20
SGAGKTT+ AL ++++
Sbjct: 13 SGAGKTTIARALAEKLR 29
>gnl|CDD|237599 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
Provisional.
Length = 268
Score = 26.8 bits (60), Expect = 7.2
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 17/58 (29%)
Query: 72 RRTTWLEL----------NKTITRVMENLGINHRRQVQISGLSG----GQRKRLALAV 115
R T L NK + +++LG+N V +SGL G G+RK+ V
Sbjct: 64 RYTDRETLEVFIMAMALINKQLVERLQSLGVN---AVGLSGLDGGLLEGKRKKAVRVV 118
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 26.4 bits (58), Expect = 7.8
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGL------VQGEILLNGCPISRTVMSRISGYVAQQDFLIEE 55
PSG GKT+LL L + + + R ++ ++ +A + L+ E
Sbjct: 32 PSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLRELAAELLLLRE 90
>gnl|CDD|224710 COG1797, CobB, Cobyrinic acid a,c-diamide synthase [Coenzyme
metabolism].
Length = 451
Score = 26.8 bits (60), Expect = 8.2
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 7/27 (25%)
Query: 4 SGAGKTT----LLAALNKRVKGL-VQG 25
SG+GKTT L+ AL +R GL VQ
Sbjct: 10 SGSGKTTVTLGLMRALRRR--GLKVQP 34
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 26.8 bits (59), Expect = 8.3
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 104 SGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
S G + RL A+ + P IL DE + D ++ + + E I I
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSL 203
Query: 164 SGVFEKFDTVSLLAHGGLLAYHGQVSKVLKHF 195
S V + F T +L H G + +G + +V+ H+
Sbjct: 204 SQV-KSFCTKALWLHYGQVKEYGDIKEVVDHY 234
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 27.0 bits (60), Expect = 8.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 72 RRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQILFC 126
RR ++LELN+ I R NL S G RK +A+ L P+ +FC
Sbjct: 36 RRYSYLELNEEINRT-ANLF-----------YSLGIRKGDKVALHLDNCPEFIFC 78
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 26.1 bits (58), Expect = 8.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 4 SGAGKTTLLAAL 15
SG+GKTTLL L
Sbjct: 10 SGSGKTTLLEKL 21
>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MobA;
Provisional.
Length = 369
Score = 26.5 bits (59), Expect = 9.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 4 SGAGKTTLLAALNKRVKG 21
SG+GKTTL+ AL +R+
Sbjct: 14 SGSGKTTLITALVRRLSE 31
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 26.0 bits (58), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 1 MSPSGAGKTTLLAAL 15
SG GK+TLL AL
Sbjct: 41 AGQSGVGKSTLLNAL 55
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 26.2 bits (58), Expect = 9.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNG 31
+G+GKTT+ AL +R+K I L+G
Sbjct: 16 AGSGKTTIAKALYERLKLKYSNVIYLDG 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.386
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,843,984
Number of extensions: 908776
Number of successful extensions: 1968
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1667
Number of HSP's successfully gapped: 528
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)