RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4235
(197 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 117 bits (295), Expect = 8e-33
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR---TVMSRISGYVAQQDFLIEEL 56
P+GAGKTT L ++ L++ G + + G + V I Y+ ++ +
Sbjct: 49 PNGAGKTTTLRIIS----TLIKPSSGIVTVFGKNVVEEPHEVRKLI-SYLPEEAGAYRNM 103
Query: 57 TVLEHLQFMAKL-TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAV 115
+E+L+F+A E+ + + R E G+ + + ++S S G ++L +A
Sbjct: 104 QGIEYLRFVAGFYASSSS----EIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
L+ P++ DEPT+GLD +A V +LKQ + E ++
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 115 bits (290), Expect = 2e-32
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
P+G GKTTLL ++ ++ GEI+ NG PI++ V +I ++ ++ + +++V
Sbjct: 43 PNGIGKTTLLKTIS----TYLKPLKGEIIYNGVPITK-VKGKI-FFLPEEIIVPRKISVE 96
Query: 60 EHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
++L+ +A L + I +E++ + ++ ++ LS G +R+ LA LL
Sbjct: 97 DYLKAVASLYGVKVN------KNEIMDALESVEVLDLKK-KLGELSQGTIRRVQLASTLL 149
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
+I D+P +D S + V+ + ++ E IVI + + D L
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS----SREELSYCDVNENLHK 205
Query: 179 GGLLA 183
Sbjct: 206 YSTKI 210
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 97.3 bits (243), Expect = 3e-25
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 32/200 (16%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE-- 60
+G GK+TLL L + +QG+I + + G+V Q +VL+
Sbjct: 39 QNGCGKSTLLDLLLGIHR-PIQGKIEV----------YQSIGFVPQFFSSPFAYSVLDIV 87
Query: 61 ------HLQFMAKLTM-DRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
H+ AK D + + ++ L + H + + + LSGGQR+ + +
Sbjct: 88 LMGRSTHINTFAKPKSHDYQV--------AMQALDYLNLTHLAKREFTSLSGGQRQLILI 139
Query: 114 AVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDT 172
A + +E +++ DEPT+ LD + + V++LL LA + V+ HQP V +
Sbjct: 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANK 198
Query: 173 VSLLAHGGLLAYHGQVSKVL 192
LL + + G+ +L
Sbjct: 199 TLLL-NKQNFKF-GETRNIL 216
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 97.7 bits (244), Expect = 4e-25
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 17/202 (8%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS------RISGYVAQ--QDFLIE 54
+GAGKTTLL LN G + L G + S I G+V+ + E
Sbjct: 55 LNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQHI-GFVSHSLLEKFQE 112
Query: 55 ELTVLEHL--QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
V++ + + + + N+ ++++ +G++ + Q I LS G+++R+
Sbjct: 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEA-HQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACE--SRIVICAIHQPTSGVFEKF 170
+A L+ +PQ+L DEP GLD + +++++L L+ + +I H + F
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANF 230
Query: 171 DTVSLLAHGGLLAYHGQVSKVL 192
+ LL G + G V +L
Sbjct: 231 SKILLLKDGQSIQ-QGAVEDIL 251
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 96.6 bits (241), Expect = 9e-24
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
P+G GKTT L + +G + +S Y Q+ F + TV ++L
Sbjct: 302 PNGIGKTTFARILVGEITA-DEGSVTPEKQILS---------YKPQRIFPNYDGTVQQYL 351
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
+ +K + + V + L ++ + ++ LSGG+ ++L +A L E
Sbjct: 352 ENASKDALSTS------SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEAD 405
Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+ D+P++ LD V +K++ E + V
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Score = 83.9 bits (208), Expect = 3e-19
Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 30/172 (17%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGY-------------- 45
+G GKTT+L L G + G+ N V+ R G
Sbjct: 33 KNGVGKTTVLKILA----GEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKELYSNEL 86
Query: 46 -VAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
+ + +E + L+ + + ++ V E L + + + LS
Sbjct: 87 KIVHKIQYVE--YASKFLKGTVNEILTK----IDERGKKDEVKELLNMTNLWNKDANILS 140
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
GG +RL +A LL E + D+P++ LD N+ +++L +++
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 91.1 bits (227), Expect = 6e-23
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 28/203 (13%)
Query: 3 PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELT 57
P+GAGK+TLLA + G+ +G I G P+ S T ++ Y++QQ
Sbjct: 34 PNGAGKSTLLARMA----GMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA--- 114
V +L + + + V L ++ + + LSGG+ +R+ LA
Sbjct: 90 VWHYLTL-------HQHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 115 VQL----LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT-SGVFEK 169
+Q+ Q+L DEP LD + + +L L+ + ++ + H +
Sbjct: 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRH-- 199
Query: 170 FDTVSLLAHGGLLAYHGQVSKVL 192
LL G +LA G+ +VL
Sbjct: 200 AHRAWLLKGGKMLA-SGRREEVL 221
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 92.0 bits (229), Expect = 4e-22
Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 24/157 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
P+G GKTT + L G+ + G++ + ++ Y Q E TV
Sbjct: 390 PNGIGKTTFVKMLA----GVEEPTEGKVEWDL---------TVA-YKPQYIKAEYEGTVY 435
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
E L + ++ T +++ LGI + LSGG+ +R+A+A LL
Sbjct: 436 ELLSKIDSSKLNSN-------FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR 488
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+ I DEP+ LD V ++ L ++
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Score = 89.7 bits (223), Expect = 3e-21
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 22/171 (12%)
Query: 3 PSGAGKTTLLAALNKRVK-----GLVQGEILLNGCPIS--RTVMSRISGYVAQQDF---- 51
P+G GKTT + L ++ + ++ + + R+ +
Sbjct: 125 PNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184
Query: 52 --LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
L+ + + + + K +D + E+ ++ L + + ++ LSGG+ +
Sbjct: 185 VDLLPKAVKGKVRELLKK--VDEVGKFEEV-------VKELELENVLDRELHQLSGGELQ 235
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
R+A+A LL + F DEP++ LD V ++++LA E + V+ H
Sbjct: 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 87.8 bits (218), Expect = 2e-21
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 25/154 (16%)
Query: 3 PSGAGKTTLLAALNKRVKGLV--QGEILLNGCPISRTVMSRISGYVAQ--QDFLIEELTV 58
P+G+GKTTLL A++ GL+ G I +NG + + + Y + + I +TV
Sbjct: 38 PNGSGKTTLLRAIS----GLLPYSGNIFINGMEVRK--IRNYIRYSTNLPEAYEIG-VTV 90
Query: 59 LEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGIN-HRRQVQISGLSGGQRKRLALA 114
+ + + L D +++ L + + ++ LS GQ + +
Sbjct: 91 NDIVYLYEELKGLDRDL----------FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
+ L ++P+I+ DEP +D+ + + +K+
Sbjct: 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEY 174
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 89.3 bits (222), Expect = 3e-21
Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 17/172 (9%)
Query: 3 PSGAGKTTLLAALN-------KRVKGLVQGEILL---NGCPISRTVMSRISGYVAQ---- 48
+G GK+T L L R + + ++ G + + +
Sbjct: 111 TNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170
Query: 49 QDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
Q + +Q + +L R + + + R ++ L + + + I LSGG+
Sbjct: 171 QYVDNIPRAIKGPVQKVGELLKLRME---KSPEDVKRYIKILQLENVLKRDIEKLSGGEL 227
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+R A+ + + E + DEP++ LD N +++ L ++ VIC H
Sbjct: 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
Score = 88.9 bits (221), Expect = 6e-21
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 24/157 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
+G GKTTL+ L G ++ G+ + +S Q+ TV
Sbjct: 386 ENGTGKTTLIKLLA----GALKPDEGQDIPKL---------NVS-MKPQKIAPKFPGTVR 431
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+ + + T V++ L I+ ++ LSGG+ +R+A+ + L
Sbjct: 432 QLF-------FKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI 484
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
I DEP+ LDS ++++ ++
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 82.5 bits (205), Expect = 7e-20
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 27/177 (15%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV----QGEILLNGCPISRTVMSRIS-------GYVAQQ 49
+ SG+GK+TLL L GL+ +G++ L G + T +S G+V Q
Sbjct: 36 IGASGSGKSTLLYIL-----GLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90
Query: 50 DFLIEELTVLEH----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSG 105
+LI ELT LE+ + M K + + L + LG+ + + LSG
Sbjct: 91 HYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-------LSELGLGDKLSRKPYELSG 143
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
G+++R+A+A L EP +LF DEPT LDS + V+++ ++ ++ H+
Sbjct: 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 83.9 bits (208), Expect = 3e-19
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 24/157 (15%)
Query: 3 PSGAGKTTL---LAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
P+G GKTT LA + + +G +I + ++ Y Q E TV
Sbjct: 320 PNGIGKTTFVKMLAGVEEPTEG----KIEWDL---------TVA-YKPQYIKADYEGTVY 365
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+ ++K+ + L N T +++ LGI +++ LSGG+ +R+A+A LL
Sbjct: 366 ---ELLSKIDASK----LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418
Query: 120 EPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
+ I DEP+ LD V ++ L ++
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Score = 81.6 bits (202), Expect = 2e-18
Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 22/171 (12%)
Query: 3 PSGAGKTTLLAALNKRVK-----GLVQGEILLNGCPISRTVMSRISGYVAQ--QDF---- 51
P+G GK+T + L ++ + ++ + +
Sbjct: 55 PNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114
Query: 52 --LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
LI + + ++ + K + + V++ L + + + +I LSGG+ +
Sbjct: 115 VDLIPKAVKGKVIELLKKADETGK---------LEEVVKALELENVLEREIQHLSGGELQ 165
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
R+A+A LL F DEP++ LD N +++L+ E + V+ H
Sbjct: 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 79.9 bits (198), Expect = 2e-18
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 27/206 (13%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPI--SRTVMSRIS---GYVAQ----QD 50
+G GK+TL N G++ G IL + PI SR + ++ G V Q Q
Sbjct: 42 GNGVGKSTLFQNFN----GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ- 96
Query: 51 FLIEELTVLEHLQF-MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
L +V + + F + + E+ K + ++ GI H + LS GQ+K
Sbjct: 97 -LFSA-SVYQDVSFGAVNMKLPED----EIRKRVDNALKRTGIEHLKDKPTHCLSFGQKK 150
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFE 168
R+A+A L+ EP++L DEPT GLD + ++ LL ++ E I +I A H V
Sbjct: 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD-IDIVPL 209
Query: 169 KFDTVSLLAHGGLLAYHGQVSKVLKH 194
D V ++ G ++ G +V
Sbjct: 210 YCDNVFVMKEGRVIL-QGNPKEVFAE 234
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 76.5 bits (189), Expect = 2e-17
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRISGYVAQ----QDFLIEE 55
+G+GK+TLL + GL+ G++L +G + R G Q Q E
Sbjct: 41 NTGSGKSTLLQIVA----GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQ--FFAE 94
Query: 56 LTVLEHLQFMAK-LTMDRRTTWLELNKTITRVMENLGINHRRQVQIS--GLSGGQRKRLA 112
V + + F K DR + + + ME +G++ LSGG+++R+A
Sbjct: 95 -RVFDEVAFAVKNFYPDR-----DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVA 148
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
+A ++ EP IL DEP GLD +++ ++++ + VI H V D
Sbjct: 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD-IETVINHVDR 207
Query: 173 VSLLAHGGLLAYHGQVSKVLKH 194
V +L G + G + L+
Sbjct: 208 VVVLEKGKKVF-DGTRMEFLEK 228
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 78.2 bits (192), Expect = 3e-17
Identities = 41/155 (26%), Positives = 58/155 (37%), Gaps = 24/155 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQ-DFLIEELTVLEH 61
P+G GK+TL+ A+ G P R YV D + +VL+
Sbjct: 469 PNGCGKSTLMRAIANGQVD---------GFPTQEEC--RT-VYVEHDIDGTHSDTSVLDF 516
Query: 62 LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSGGQRKRLALAVQLLTE 120
+ T + I + G IS LSGG + +LALA +L
Sbjct: 517 VFESGVGTKEA----------IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRN 566
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIV 155
IL DEPT LD+ + +VN L S +
Sbjct: 567 ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITI 601
Score = 58.1 bits (140), Expect = 2e-10
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 39 MSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELN-KTITRVMENLGINHRRQ 97
M + + L+E + + + + + L K I LG++
Sbjct: 837 MMSVDNAWIPRGELVESHS--KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894
Query: 98 VQ--ISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
I GLSGGQ+ +L LA P ++ DEPT LD
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 28.1 bits (62), Expect = 2.5
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 21/113 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF----LIEELTV 58
P+GAGK+TL+ L + GE+ RI Y+ Q F + T
Sbjct: 707 PNGAGKSTLINVLTGELL-PTSGEVY-----THENC--RI-AYIKQHAFAHIESHLDKTP 757
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
E++Q+ + DR +T+ R + N + G +R+
Sbjct: 758 SEYIQWRFQTGEDR--------ETMDRANRQINENDAEAMNKIFKIEGTPRRI 802
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 75.3 bits (186), Expect = 5e-17
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 25/164 (15%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV----QGEILLNGCPISR-------TVMSRISGYVAQQ 49
M PSG+GK+T+L + G + +GE+ ++ + + G+V QQ
Sbjct: 37 MGPSGSGKSTMLNII-----GCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
Query: 50 DFLIEELTVLEH----LQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LS 104
LI LT LE+ L F + M E K ++ + R LS
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAMSGE----ERRKRALECLKMAELEERFANHKPNQLS 147
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
GGQ++R+A+A L P I+ D+PT LDS + ++ LLK+L
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 69.7 bits (171), Expect = 2e-14
Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 23/203 (11%)
Query: 4 SGAGKTTLLAALNKRVKGL---VQGEILLNGCPIS-------RTVMSRISGYVAQQDFLI 53
SGAGK+TL+ +N L +G +L++G ++ +I G + Q L+
Sbjct: 63 SGAGKSTLIRCVN----LLERPTEGSVLVDGQELTTLSESELTKARRQI-GMIFQHFNLL 117
Query: 54 EELTVLEHLQFMAKLT-MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA 112
TV ++ +L + E+ + +T ++ +G+ + S LSGGQ++R+A
Sbjct: 118 SSRTVFGNVALPLELDNTPKD----EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA 173
Query: 113 LAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAI-HQPTSGVFEKFD 171
+A L + P++L CD+ T+ LD + +++ LLK + + I I H+ V D
Sbjct: 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICD 232
Query: 172 TVSLLAHGGLLAYHGQVSKVLKH 194
V+++++G L+ VS+V H
Sbjct: 233 CVAVISNGELIE-QDTVSEVFSH 254
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 64.1 bits (157), Expect = 7e-13
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGY-VA---QQDFLIEE 55
P+G+GK+TL+ + G ++ G + I+ + + Y + Q ++E
Sbjct: 41 PNGSGKSTLINVIT----GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96
Query: 56 LTVLE------HLQFMAKL-TMDRRTTWLELNKTITRVMENL---GINHRRQVQISGLSG 105
+TVLE + L ++ + + + + + + L ++H + LSG
Sbjct: 97 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 156
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGL 133
GQ K + + L+T P+++ DEP G+
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 64.1 bits (157), Expect = 7e-13
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 21/140 (15%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELTV 58
P+GAGK+ L + + G+V+ GE+ LNG I+ R G+V Q L L+V
Sbjct: 32 PTGAGKSVFL----ELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 59 LEHLQF----MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
++ + + ++ DRR + + E LGI H + + LSGG+R+R+ALA
Sbjct: 88 YRNIAYGLRNVERVERDRR---------VREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
Query: 115 VQLLTEPQILFCDEPTTGLD 134
L+ +P++L DEP + +D
Sbjct: 139 RALVIQPRLLLLDEPLSAVD 158
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 64.2 bits (157), Expect = 8e-13
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS------RTVMSRISGYVAQQDFLIEEL 56
PSG+GK+T L LN ++ +GEI+++G + V + G V Q+ L +
Sbjct: 58 PSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKVREEV-GMVFQRFNLFPHM 115
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
TVL ++ R+ + +++ +G+ + LSGGQ +R+A+A
Sbjct: 116 TVLNNI--TLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARA 173
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
L EP+I+ DEPT+ LD V++++KQLA E ++ H
Sbjct: 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 63.4 bits (155), Expect = 2e-12
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 3 PSGAGKTTLLAALNKR-VKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELT 57
PSG+GKTT+L R + GL + G++ + G ++ R G V Q L + +T
Sbjct: 49 PSGSGKTTIL-----RLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG--------LSGGQRK 109
V +++ F + +R E++ RV E L R +++ LSGGQ++
Sbjct: 104 VYDNVSFGLRE---KRVPKDEMDA---RVRELL-----RFMRLESYANRFPHELSGGQQQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLD 134
R+ALA L PQ+L DEP +D
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAID 177
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 60.5 bits (148), Expect = 1e-11
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 5 GAGKTTLLAALNKRVKGLV---QGEILLNGCPISRTVMSRIS----GYVAQQDFLIEELT 57
GAGKTT L+A+ GLV +G+I+ NG I+ I+ V + + ELT
Sbjct: 42 GAGKTTTLSAIA----GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LSGGQRKRLALAVQ 116
V E+L A D+ + + + + R Q+ G LSGG+++ LA+
Sbjct: 98 VYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153
Query: 117 LLTEPQILFCDEPTTGL 133
L++ P++L DEP+ GL
Sbjct: 154 LMSRPKLLMMDEPSLGL 170
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 61.4 bits (150), Expect = 1e-11
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 24/141 (17%)
Query: 3 PSGAGKTTLLAALNKR-VKGLVQ---GEILLNGCPISRT-VMSRISGYVAQQDFLIEELT 57
P+GAGKT L + G G ILL+G ++ +V Q L +
Sbjct: 34 PTGAGKTLFL-----ELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88
Query: 58 VLEHLQF---MAKLTMDRRTTW-LELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL 113
V ++L+F M K+ +R K +E+L R + LSGG+++R+AL
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTARDLK-----IEHLL--DRNPLT---LSGGEQQRVAL 138
Query: 114 AVQLLTEPQILFCDEPTTGLD 134
A L+T P+IL DEP + LD
Sbjct: 139 ARALVTNPKILLLDEPLSALD 159
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 59.5 bits (145), Expect = 6e-11
Identities = 46/152 (30%), Positives = 62/152 (40%), Gaps = 39/152 (25%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMS-----RISGYVAQQDF-LI 53
SG GKTTLL L G Q GEI L+G I + R GY+ Q + L
Sbjct: 38 ASGCGKTTLLRCL----AGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ-EGVLF 92
Query: 54 EELTVLEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-------- 102
LTV ++ + K + R+ L IS
Sbjct: 93 PHLTVYRNIAYGLGNGKGRTAQERQ---------RIEAML-----ELTGISELAGRYPHE 138
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
LSGGQ++R ALA L +P+++ DEP + LD
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALD 170
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 58.7 bits (143), Expect = 7e-11
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQ-------------- 48
SG+GK+T L +N ++ +G I++NG I+ VA
Sbjct: 40 SSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 98
Query: 49 -QDF-LIEELTVLEHLQF--MAKLTMDRRTTWLELNKTITRVMENL---GINHRRQVQI- 100
Q F L +TVLE++ + L + + R ++ L GI+ R Q +
Sbjct: 99 FQHFNLWSHMTVLENVMEAPIQVLGLSKH-------DARERALKYLAKVGIDERAQGKYP 151
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
LSGGQ++R+++A L EP +L DEPT+ LD V+ +++QLA E + ++ H
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 54.6 bits (132), Expect = 2e-09
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 3 PSGAGKTTLLAALNKR-VKGL---VQGEILLNGCPISRTVMSRISGYVAQQD------F- 51
PSGAGKTT + R + GL GE+ + R V S V +D F
Sbjct: 39 PSGAGKTTFM-----RIIAGLDVPSTGELYFDD----RLVASNGKLIVPPEDRKIGMVFQ 89
Query: 52 ---LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQR 108
L LT E++ F + + E+ K + V + L I+H LSG Q+
Sbjct: 90 TWALYPNLTAFENIAFPLTN---MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQ 146
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
+R+ALA L+ +P +L DEP + LD
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLD 172
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 52.5 bits (127), Expect = 1e-08
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 33/173 (19%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMS---RISGYVAQQDFLIEELTV 58
PSG GK+T+ +L +R GEI ++G PI ++ + +I G+V+Q ++ T+
Sbjct: 36 PSGGGKSTI-FSLLERFYQPTAGEITIDGQPIDNISLENWRSQI-GFVSQDSAIMAG-TI 92
Query: 59 LEHLQFMAKLTMDRRTTW------------LEL-NKTITRVMENLGINHRRQVQISGLSG 105
E+L + + W + ++ T V E R V+ +SG
Sbjct: 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE-------RGVK---ISG 142
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
GQR+RLA+A L P+IL DE T LDS S + V L L + R +VI
Sbjct: 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVI 194
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 51.8 bits (125), Expect = 3e-08
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 32/153 (20%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-----GYVAQQDFLIEELT 57
SG+GK+T+ R + G I L+G + + V+Q L + T
Sbjct: 377 RSGSGKSTIANLFT-RFYDVDSGSICLDGHDVRD--YKLTNLRRHFALVSQNVHLFND-T 432
Query: 58 VLEHLQFMAKLTMDRRTTW------------LELNKTI-TRVMENLGINHRRQVQISGLS 104
+ ++ + A+ R + + + T + EN G + LS
Sbjct: 433 IANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTS---------LS 482
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
GGQR+R+A+A LL + +L DE T+ LD+ S
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTES 515
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 51.0 bits (123), Expect = 3e-08
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMS--RISGYVAQQDFLIEELTVL 59
+G+GK+T+ L + +G+I + G +++ S I G V Q L E T+
Sbjct: 54 HTGSGKSTIAKLLYRFYD--AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIK 110
Query: 60 EHLQF------------MAKL-TMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGG 106
++ + K + L K T V + ++ LSGG
Sbjct: 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALP-KKWDTIVGN-------KGMK---LSGG 159
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
+R+R+A+A LL +P+I+ DE T+ LDS + ++ L ++R I+I
Sbjct: 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIII 210
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 51.2 bits (122), Expect = 4e-08
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 50 DFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRK 109
L+ + L + + + + ++ ++ LSGG+R
Sbjct: 196 LAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERI 255
Query: 110 RLALAVQL------LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
L LA +L E +L DEPT LD ++ ++++ + VI H
Sbjct: 256 ALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 315
Query: 164 SGVFEKFDTV 173
+ + D V
Sbjct: 316 --LKDAADHV 323
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 50.7 bits (122), Expect = 4e-08
Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 66/189 (34%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR-TVMS--RISGYVAQQDFLIEELTVL 59
PSGAGK+T+L L R + G I ++G IS+ T S G V QD TVL
Sbjct: 88 PSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLRSHIGVV-PQD------TVL 139
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLG-----------INHRRQVQISG------ 102
N TI +N+ + I
Sbjct: 140 -------------------FNDTI---ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP 177
Query: 103 -------------LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLA 149
LSGG+++R+A+A +L P I+ DE T+ LD+ + + L ++
Sbjct: 178 EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV- 236
Query: 150 CESR--IVI 156
C +R IV+
Sbjct: 237 CANRTTIVV 245
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 50.8 bits (122), Expect = 8e-08
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
SG GK+T L +R+ + G + ++G I R + I G V+Q+ L T+
Sbjct: 424 NSGCGKSTT-VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII-GVVSQEPVLFAT-TI 480
Query: 59 LEHLQF-MAKLTMDRRTTWLEL-----------NKTITRVMENLGINHRRQVQISGLSGG 106
E++++ +TMD ++ ++ T V E R Q LSGG
Sbjct: 481 AENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE-------RGAQ---LSGG 530
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
Q++R+A+A L+ P+IL DE T+ LD+ S V L + A E R IVI
Sbjct: 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVI 581
Score = 50.0 bits (120), Expect = 1e-07
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 24/172 (13%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
SG GK+T++ L R + G + L+G I + + +++ G V+Q+ L + ++
Sbjct: 1067 SSGCGKSTVVQLLE-RFYDPMAGSVFLDGKEIKQLNVQWLRAQL-GIVSQEPILFDC-SI 1123
Query: 59 LEHLQFMAKLTMDRRTTWLELNKT-----ITRVMENL--GINHR---RQVQISGLSGGQR 108
E++ + R ++ E+ + I + +++L N R + Q LSGGQ+
Sbjct: 1124 AENIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ---LSGGQK 1177
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIH 160
+R+A+A L+ +P IL DE T+ LD+ S V L + A E R I H
Sbjct: 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAH 1228
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 47.8 bits (114), Expect = 2e-07
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 49 QDFLIEE---LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISG-LS 104
+ E + A+ T + + + + + +V L + + + LS
Sbjct: 3 KALAREAALSKIGELASEIFAEFT-EGKYSEVVVRAEENKV--RLFVVWEGKERPLTFLS 59
Query: 105 GGQRKRLALAVQL------LTEPQILFCDEPTTGLDSYSANNVVNLLKQL 148
GG+R L LA +L E +L DEPT LD ++ ++++
Sbjct: 60 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 109
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 49.5 bits (119), Expect = 2e-07
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 32/153 (20%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-----GYVAQQDFLIEELT 57
SG+GK+T+ + + R + +G IL++G + + S V+Q L + T
Sbjct: 377 RSGSGKSTIASLIT-RFYDIDEGHILMDGHDLRE--YTLASLRNQVALVSQNVHLFND-T 432
Query: 58 VLEHLQF--MAKLTMDRRTTWLEL-----------NKTITRVMENLGINHRRQVQISGLS 104
V ++ + + + ++ + N T + EN G+ LS
Sbjct: 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVL---------LS 482
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
GGQR+R+A+A LL + IL DE T+ LD+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTES 515
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 47.8 bits (114), Expect = 5e-07
Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 43/155 (27%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLI----- 53
+G+GK+TLL+A + + +GEI ++G V Q I
Sbjct: 55 RTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFG--VIPQKVFIFSGTF 110
Query: 54 ------------EEL-TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI 100
+E+ V + + + +++ L+ +++ G
Sbjct: 111 RKNLDPNAAHSDQEIWKVADEVGL--RSVIEQFPGKLD-----FVLVDG-GCV------- 155
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS 135
LS G ++ + LA +L++ +IL DEP+ LD
Sbjct: 156 --LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 46.3 bits (111), Expect = 1e-06
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESR--IVI 156
+GLSGGQR+R+A+A L+ P+IL DE T+ LD S + ++ + ++ C+ R I+I
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIII 200
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 46.0 bits (110), Expect = 2e-06
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
LSGGQR+ +ALA L+ +P++L D T+ LD+ +
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 45.6 bits (108), Expect = 3e-06
Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 42 ISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQIS 101
Q + + +++ A D +++EL K + + I
Sbjct: 224 FGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPN----GVLTID 279
Query: 102 GLSGGQRKRLALA-------VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI 154
LSGG++ +AL+ + + + DEPT LD + + +++ ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 155 VI 156
+I
Sbjct: 340 II 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 44.9 bits (107), Expect = 5e-06
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 31/146 (21%)
Query: 3 PSGAGKTTLLAALNKR-VKGL---VQGEILLNG------CPISRTV-MSRISGYVAQQDF 51
PSG+GK+TLL + G+ G+I + P R V + V Q
Sbjct: 37 PSGSGKSTLL-----YTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL------VFQNWA 85
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQR 108
L +TV +++ F +L R+ E++K + V + L I+ R Q LSGGQ+
Sbjct: 86 LYPHMTVYKNIAFPLEL---RKAPREEIDKKVREVAKMLHIDKLLNRYPWQ---LSGGQQ 139
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
+R+A+A L+ EP++L DEP + LD
Sbjct: 140 QRVAIARALVKEPEVLLLDEPLSNLD 165
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 44.1 bits (105), Expect = 1e-05
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
LSGGQ++RL++A L P IL DE T+ LD S
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Score = 31.4 bits (72), Expect = 0.19
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS-----GYVAQQDFL 52
SG GK+TL+ + R + G+IL++G I S G V Q + L
Sbjct: 375 MSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKD--FLTGSLRNQIGLVQQDNIL 426
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 43.7 bits (104), Expect = 2e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYS 137
LSGGQ++R+A+A LL P+IL DE T+ LD+ +
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
Score = 31.4 bits (72), Expect = 0.19
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQ 49
PSG+GK+T + +L R+ G I L+G I + S+I G V+Q+
Sbjct: 378 PSGSGKST-VLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI-GTVSQE 426
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 43.4 bits (103), Expect = 2e-05
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 31/146 (21%)
Query: 3 PSGAGKTTLLAALNKR-VKGL---VQGEILLNGC------PISRTV-MSRISGYVAQQDF 51
PSG GKTT L + G+ GEI + P R V M V Q
Sbjct: 37 PSGCGKTTTL-----LMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM------VFQNYA 85
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQR 108
L +TV E++ F + RR + E+ K + + L I++ R+ Q LSGGQ+
Sbjct: 86 LYPHMTVFENIAFPLRA---RRISKDEVEKRVVEIARKLLIDNLLDRKPTQ---LSGGQQ 139
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
+R+ALA L+ +P++L DEP + LD
Sbjct: 140 QRVALARALVKQPKVLLFDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 42.6 bits (101), Expect = 3e-05
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 31/146 (21%)
Query: 3 PSGAGKTTLLAALNKR-VKGL---VQGEILLNGC------PISRTV-MSRISGYVAQQDF 51
PSG GKTT L R + GL +G I P R + M V Q
Sbjct: 45 PSGCGKTTTL-----RMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM------VFQSYA 93
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSGGQR 108
+ +TV E++ F K+ ++ E++K + E L I R Q LSGGQR
Sbjct: 94 VWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQ---LSGGQR 147
Query: 109 KRLALAVQLLTEPQILFCDEPTTGLD 134
+R+A+A ++ EP +L DEP + LD
Sbjct: 148 QRVAVARAIVVEPDVLLMDEPLSNLD 173
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 42.2 bits (100), Expect = 4e-05
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 33/150 (22%)
Query: 3 PSGAGKTTLLAALNKR-VKGL---VQGEILLNGCPISRTV-MSRISGYVAQQD------F 51
PSG GKTT L R + GL +G+I + + V +V +D F
Sbjct: 37 PSGCGKTTTL-----RMIAGLEEPSRGQIYIGD----KLVADPEKGIFVPPKDRDIAMVF 87
Query: 52 ----LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLS 104
L +TV +++ F KL R+ E+++ + V E LG+ R+ + LS
Sbjct: 88 QSYALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRE---LS 141
Query: 105 GGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
GGQR+R+AL ++ +PQ+ DEP + LD
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 39.5 bits (93), Expect = 3e-04
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 60/224 (26%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
G GK++LL+AL + V+G + + G ++ YV QQ + I+ ++ E++
Sbjct: 39 QVGCGKSSLLSALLAEMD-KVEGHVAIKG---------SVA-YVPQQAW-IQNDSLRENI 86
Query: 63 QFMAKLTMDRRTTWLELNKTI-----TRVMENL-----------GINHRRQVQISGLSGG 106
F +L I +E L G+N LSGG
Sbjct: 87 LFGCQLEEPY------YRSVIQACALLPDLEILPSGDRTEIGEKGVN---------LSGG 131
Query: 107 QRKRLALAVQLLTEPQILFCDEPTTGLDSYSA----NNVVNLLKQLACESRIVICAIHQP 162
Q++R++LA + + I D+P + +D++ NV+ L ++ I H
Sbjct: 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK--NKTRILVTHSM 189
Query: 163 TSGVFEKFDTVSLLAHGG---------LLAYHGQVSKVLKHFAK 197
+ + D + +++ G LLA G ++ L+ +A
Sbjct: 190 S--YLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 43/161 (26%)
Query: 5 GAGKTTL--LAALNKRVKGLVQGEIL---LNGCPISRTVMSRI--------SGYVAQQDF 51
G+GKT + L+ +V+ + +I L C TV+ + + ++ D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 52 L------IEEL-TVLEHLQFMAK------LTMD---RRTTWLELN---KTI--TR---VM 87
I + L L +K L + W N K + TR V
Sbjct: 220 SSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 88 ENLGINHRRQVQI----SGLSGGQRKRLALAVQLLTEPQIL 124
+ L + + L+ + K L L L PQ L
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDL 318
Score = 29.4 bits (65), Expect = 0.87
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 46/144 (31%)
Query: 41 RISGYVAQQDFLIEELTVLEHLQ---FMAKLTMDRRTTWLELNKTITRVMENLGINHRRQ 97
+ Y + L +EH + + +D R +LE K I H
Sbjct: 468 YLDQYFYS--HIGHHLKNIEHPERMTLFRMVFLDFR--FLE-QK----------IRH--- 509
Query: 98 VQISGLSGGQRKRLALAVQLLT--EPQILFCD-EPTTGLDSYSA--NNVVNLLKQLACES 152
+ + +Q L +P I CD +P Y N +++ L + E
Sbjct: 510 ---DSTAWNASGSILNTLQQLKFYKPYI--CDNDPK-----YERLVNAILDFLPK--IEE 557
Query: 153 RIVIC--------AIHQPTSGVFE 168
++ A+ +FE
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFE 581
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 37.1 bits (87), Expect = 0.002
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 33/156 (21%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISR-TVMSR--------------ISG 44
M P+G+GK+TL A L R V G + G + + R I G
Sbjct: 52 MGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111
Query: 45 YVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQIS 101
V+ Q FL L + + L + + + L + R V
Sbjct: 112 -VSNQFFLQTALNAVRSYRGQETLDR------FDFQDLMEEKIALLKMPEDLLTRSVN-V 163
Query: 102 GLSGGQRKR---LALAVQLLTEPQILFCDEPTTGLD 134
G SGG++KR L +A + EP++ DE +GLD
Sbjct: 164 GFSGGEKKRNDILQMA---VLEPELCILDESDSGLD 196
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 37.2 bits (87), Expect = 0.002
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 103 LSGGQRKRLALAVQLLTEPQILFCDEPTTGLDSYSA 138
SGGQ++RL++A L+ +P++L D D S+
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILD------DCTSS 509
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 36.4 bits (84), Expect = 0.003
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 53 IEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGI---NHRRQVQISGLSGGQR- 108
L+ + K T I E G + + GLSGG+R
Sbjct: 227 FSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERA 286
Query: 109 -----KRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVI 156
++LA F DE + LD+ + + ++LK+L +++++
Sbjct: 287 LISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 36.0 bits (84), Expect = 0.003
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 45/193 (23%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
+GAGKT+LL + ++ +G+I +G RIS + +Q + I T+ E++
Sbjct: 42 STGAGKTSLLMMIMGELE-PSEGKIKHSG---------RIS-FCSQFSW-IMPGTIKENI 89
Query: 63 QFMAKLTMDRRTTWLE---LNKTI--------TRVMENLGINHRRQVQISGLSGGQRKRL 111
F R + ++ L + I + E GI LSGGQR R+
Sbjct: 90 IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT---------LSGGQRARI 139
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSA----NNVVN-LLKQLACESRIVICAIHQPTSGV 166
+LA + + + D P LD + + V L+ ++ I +
Sbjct: 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-----NKTRILVTSKME--H 192
Query: 167 FEKFDTVSLLAHG 179
+K D + +L G
Sbjct: 193 LKKADKILILHEG 205
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 35.9 bits (84), Expect = 0.004
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 2 SPSGAGKTTLLAALNKRVKGL 22
+PSGAGKT+L+ AL K + +
Sbjct: 14 APSGAGKTSLVRALVKALAEI 34
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 36.2 bits (84), Expect = 0.004
Identities = 43/197 (21%), Positives = 76/197 (38%), Gaps = 44/197 (22%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
+GAGKT+LL + ++ +G+I +G RIS + +Q + I T+ E++
Sbjct: 72 STGAGKTSLLMMIMGELE-PSEGKIKHSG---------RIS-FCSQNSW-IMPGTIKENI 119
Query: 63 QFMAKLTMDRRTTW-----------LEL--NKTITRVMENLGINHRRQVQISGLSGGQRK 109
++ D + K + E GI LSGGQR
Sbjct: 120 IG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT---------LSGGQRA 166
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVN--LLKQLACESRIVICAIHQPTSGVF 167
R++LA + + + D P LD + + + K +A ++ I +
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--NKTRILVTSKME--HL 222
Query: 168 EKFDTVSLLAHGGLLAY 184
+K D + +L G Y
Sbjct: 223 KKADKILILHEGSSYFY 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.006
Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 55/174 (31%)
Query: 26 EILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITR 85
+I++N P++ T+ G ++ I E + + + +D + ++ K I
Sbjct: 1663 DIVINN-PVNLTIH--FGGEKGKR---IREN----YSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 86 VMENLGINHRR---------QVQISGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLDS- 135
+ + Q ++ + A A + L ++ D G S
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLME------KA-AFEDLKSKGLIPADATFAGH-SL 1764
Query: 136 --YSANNVVNLLKQLACESRIVICAIHQPTSGV--FEKFDTVSLLAHGGLLAYH 185
Y+A LA + V E V ++ + G+
Sbjct: 1765 GEYAA---------LAS------------LADVMSIE--SLVEVVFYRGMTMQV 1795
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 34.8 bits (81), Expect = 0.007
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 2 SPSGAGKTTLLAALNKRVKGLVQ 24
PSGAGK+TLL L + +
Sbjct: 11 GPSGAGKSTLLKKLFQEHSSIFG 33
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 34.8 bits (81), Expect = 0.012
Identities = 42/156 (26%), Positives = 60/156 (38%), Gaps = 37/156 (23%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLV-QGEILLNGCPISR-TVMSR--------------ISG 44
M P+GAGK+TL L + V +GEILL+G I + R + G
Sbjct: 35 MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG 94
Query: 45 YVAQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQIS 101
V +FL L + E + + +E L + R +
Sbjct: 95 -VTIANFLRLALQAKL------GREVGVA----EFWTKVKKALELLDWDESYLSRYLN-E 142
Query: 102 GLSGGQRKR---LALAVQLLTEPQILFCDEPTTGLD 134
G SGG++KR L L + EP DE +GLD
Sbjct: 143 GFSGGEKKRNEILQLL---VLEPTYAVLDETDSGLD 175
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 34.5 bits (80), Expect = 0.013
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 2 SPSGAGKTTLLAALNKRVKGL 22
PS GK+T++ L +R+ L
Sbjct: 27 GPSAVGKSTVVRCLRERIPNL 47
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 34.1 bits (79), Expect = 0.017
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 2 SPSGAGKTTLLAALNKR 18
+PSGAGK++L+ AL K
Sbjct: 23 APSGAGKSSLIQALLKT 39
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 33.7 bits (78), Expect = 0.023
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 2 SPSGAGKTTLLAALNKRVK 20
SPSG GKTT+ L ++ K
Sbjct: 34 SPSGCGKTTVANKLLEKQK 52
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 33.3 bits (77), Expect = 0.031
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 2 SPSGAGKTTLLAALNKRVKG 21
PSG GK TL+ +
Sbjct: 19 GPSGVGKGTLIKKVLSEFPS 38
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 33.3 bits (77), Expect = 0.032
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 2 SPSGAGKTTLLAALNKR 18
PSG GK TL+ L
Sbjct: 30 GPSGVGKGTLIKKLLNE 46
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 33.2 bits (77), Expect = 0.032
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 2 SPSGAGKTTLLAALNKRV 19
PSG GK T+ + +
Sbjct: 13 GPSGVGKGTVRKRIFEDP 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 33.3 bits (77), Expect = 0.041
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 39/150 (26%)
Query: 3 PSGAGKTTLLAALNKR-VKGL---VQGEILLNGC------PISRTV-MSRISGYVAQQDF 51
PSG GK+TLL R + GL G++ + P R V M V Q
Sbjct: 37 PSGCGKSTLL-----RMIAGLETITSGDLFIGEKRMNDTPPAERGVGM------VFQSYA 85
Query: 52 LIEELTVLEHLQF---MAKLTMDRRTTWLELNKTITRVMENLGINH---RRQVQISGLSG 105
L L+V E++ F +A + +N+ + +V E L + H R+ LSG
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKE------VINQRVNQVAEVLQLAHLLDRKPKA---LSG 136
Query: 106 GQRKRLALAVQLLTEPQI-LFCDEPTTGLD 134
GQR+R+A+ L+ EP + L DEP + LD
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLL-DEPLSNLD 165
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 32.8 bits (76), Expect = 0.045
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 2 SPSGAGKTTLLAALNKR 18
PSG GK T+ A+ K
Sbjct: 15 GPSGVGKGTVREAVFKD 31
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 32.6 bits (75), Expect = 0.046
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 1 MSPSGAGKTTLLAALNKRVKG 21
M G+GKT L+ +R+
Sbjct: 36 MGAIGSGKTLLIERTIERIGN 56
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 32.5 bits (75), Expect = 0.046
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 2 SPSGAGKTTLLAALNKR 18
PSG GK+TLL L
Sbjct: 8 GPSGTGKSTLLKKLFAE 24
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 32.6 bits (75), Expect = 0.047
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 1 MSPSGAGKTTLLAALNKRVKG 21
M G+GKT L+ L +K
Sbjct: 44 MGAIGSGKTLLIEKLIDNLKD 64
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 31.8 bits (73), Expect = 0.12
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 101 SGLSGGQRKRLALAVQLLTEPQILFCDEPTTGLD 134
LS GQR+ LA+ L P+IL DE T+ +D
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 31.3 bits (71), Expect = 0.14
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTV 38
P +GKTT L + +V +GE++ RT+
Sbjct: 22 PGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTL 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 30.9 bits (71), Expect = 0.24
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 19/42 (45%)
Query: 103 LSGG--QRKRLALAVQLLTEPQ---------ILFCDEPTTGL 133
LSGG QR +LA TE + +L DEPTTGL
Sbjct: 731 LSGGEAQRIKLA------TELRRSGRGGTVYVL--DEPTTGL 764
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding
Pro RNA complex; 2.60A {Thermus thermophilus} PDB:
3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A
3hjf_A
Length = 685
Score = 30.7 bits (69), Expect = 0.33
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 7/100 (7%)
Query: 65 MAKLTMDRRTTWL-ELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQI 123
+A L +D W L + + R G + R + S G R AL Q
Sbjct: 346 LALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQA 405
Query: 124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPT 163
+ P + + LK L + ++ P
Sbjct: 406 VLVLTPPMAWEDRNR------LKALLLREGLPSQILNVPL 439
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.8 bits (68), Expect = 0.64
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 19/42 (45%)
Query: 103 LSGG--QRKRLALAVQLLTEPQ---------ILFCDEPTTGL 133
LSGG QR +LA +E Q IL DEPTTGL
Sbjct: 864 LSGGEAQRVKLA------SELQKRSTGRTVYIL--DEPTTGL 897
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.4 bits (67), Expect = 0.73
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 19/42 (45%)
Query: 103 LSGG--QRKRLALAVQLLTEPQ---------ILFCDEPTTGL 133
LSGG QR +LA E IL DEPTTGL
Sbjct: 846 LSGGEAQRVKLA------AELHRRSNGRTLYIL--DEPTTGL 879
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 29.0 bits (66), Expect = 0.80
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 2 SPSGAGKTTLLAAL 15
G G+ + L
Sbjct: 12 GAHGVGRRHIKNTL 25
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure
INI northeast structural genomics consortium, unknown
function; 2.10A {Rhodopseudomonas palustris} SCOP:
c.66.1.52
Length = 387
Score = 29.3 bits (66), Expect = 0.84
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 88 ENLGINHRRQVQISGLSGGQRKRLALAVQLLTEP 121
+ LGI R ++ + + +A A+Q LT
Sbjct: 305 KRLGIETRALSLMAKATPQVSEDIAGALQRLTGE 338
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 29.4 bits (67), Expect = 0.93
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 19/42 (45%)
Query: 103 LSGG--QRKRLALAVQLLTEPQ---------ILFCDEPTTGL 133
LSGG QR +LA +E + IL DEPT GL
Sbjct: 806 LSGGEAQRIKLA------SELRKRDTGRTLYIL--DEPTVGL 839
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.0 bits (66), Expect = 0.95
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 19/42 (45%)
Query: 103 LSGG--QRKRLALAVQLLTEPQ---------ILFCDEPTTGL 133
LSGG QR +LA E IL DEPTTGL
Sbjct: 544 LSGGEAQRVKLA------AELHRRSNGRTLYIL--DEPTTGL 577
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 28.3 bits (64), Expect = 1.3
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 2 SPSGAGKTTLLAAL 15
SG G++ + AL
Sbjct: 26 GASGVGRSHIKNAL 39
>3p30_A HIV-1 GP41; HIV, GP41, cluster 2, 6-helix bundle, immune system;
3.30A {Human immunodeficiency virus 1}
Length = 96
Score = 27.1 bits (60), Expect = 1.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 34 ISRTVMSR--ISGYVAQQDFLIEELTVLEHL---------QFMAKLTMDRRTTWLELNKT 82
I+ TV R +SG V QQ L+ + +HL Q A++ R WL+ +K
Sbjct: 2 ITLTVQVRKLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLSGGRGGWLQWDKE 61
Query: 83 I 83
I
Sbjct: 62 I 62
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 27.7 bits (61), Expect = 1.9
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1 MSPSGAGKTTLLAALNKR 18
M SG+GK+++ A+ +
Sbjct: 24 MGVSGSGKSSVGEAIAEA 41
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 27.6 bits (61), Expect = 2.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 3 PSGAGKTTLLAALNKRVKG 21
P G GKT L++R+ G
Sbjct: 13 PFGVGKTHTAHTLHERLPG 31
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 27.7 bits (61), Expect = 2.2
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 1 MSPSGAGKTTLLAALNKR 18
M SG+GK+ + + + +
Sbjct: 14 MGVSGSGKSAVASEVAHQ 31
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 27.4 bits (61), Expect = 2.5
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 1 MSPSGAGKTTLLAALNKR 18
P K+T+ A L+K
Sbjct: 7 EGPDCCFKSTVAAKLSKE 24
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 27.6 bits (62), Expect = 2.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEI 27
SG GK++LL AL ++ ++
Sbjct: 223 QSGVGKSSLLNALLGLQNEILTNDV 247
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 3.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 3 PSGAGKTTLLAAL 15
+GKTTL+
Sbjct: 12 YKHSGKTTLMEKW 24
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.0 bits (60), Expect = 3.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 3 PSGAGKTTLLAAL 15
P +GKT+LL L
Sbjct: 20 PQNSGKTSLLTLL 32
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.0 bits (60), Expect = 3.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 3 PSGAGKTTLLAAL 15
P +GKT+LL L
Sbjct: 56 PQNSGKTSLLTLL 68
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 27.3 bits (61), Expect = 4.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 5 GAGKTTLLAAL 15
G+GKTTL+ AL
Sbjct: 185 GSGKTTLMKAL 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 27.0 bits (59), Expect = 4.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 5 GAGKTTLLAALNKR 18
G+GKTT L K
Sbjct: 30 GSGKTTYLNHFEKY 43
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 26.5 bits (58), Expect = 4.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 3 PSGAGKTTLLAAL 15
S +GKTTL+ +
Sbjct: 10 TSDSGKTTLITRM 22
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 27.0 bits (60), Expect = 4.5
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 5 GAGKTTLLAAL 15
G+GKTT + ++
Sbjct: 181 GSGKTTYIKSI 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 26.6 bits (58), Expect = 5.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MSPSGAGKTTLLAALNKR 18
M SG+GKTT+ +
Sbjct: 35 MGVSGSGKTTIAHGVADE 52
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 26.7 bits (58), Expect = 5.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 5 GAGKTTLLAALNKRVKG 21
AGK+T + L + +
Sbjct: 34 AAGKSTFVNILKQLCED 50
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.5 bits (58), Expect = 5.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNG 31
SGAG +T+ ++ + + + G
Sbjct: 13 SSGAGTSTVKHTFDQIFRREGVKAVSIEG 41
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 26.5 bits (58), Expect = 5.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 5 GAGKTTLLAALNKRVKGLVQGE 26
GAGK+T+ A ++K++ + E
Sbjct: 10 GAGKSTISAEISKKLGYEIFKE 31
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 26.6 bits (58), Expect = 5.6
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 5 GAGKTTLLAALNKRVKGL 22
GK+T + L K
Sbjct: 12 AVGKSTFVKLLTKTYPEW 29
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.3 bits (59), Expect = 6.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 3 PSGAGKTTLLAAL 15
SG GK++LL A+
Sbjct: 177 LSGVGKSSLLNAI 189
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 26.3 bits (57), Expect = 6.3
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 3 PSGAGKTTLLAALNKR 18
S AGK+ ++ L
Sbjct: 11 GSSAGKSGIVRCLQSV 26
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 26.2 bits (58), Expect = 6.5
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 3 PSGAGKTTLLAAL 15
+GKT L L
Sbjct: 15 LCDSGKTLLFVRL 27
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 26.1 bits (58), Expect = 6.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 3 PSGAGKTTLLAAL 15
S +GKTTL L
Sbjct: 30 LSRSGKTTLANQL 42
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 26.7 bits (59), Expect = 6.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 5 GAGKTTLLAAL 15
+GKTT L A+
Sbjct: 270 ASGKTTTLNAI 280
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.4 bits (59), Expect = 7.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 3 PSGAGKTTLLAAL 15
PSG GK+++L+ L
Sbjct: 173 PSGVGKSSILSRL 185
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 26.4 bits (59), Expect = 7.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 3 PSGAGKTTLLAAL 15
SG GK++LL A+
Sbjct: 181 QSGVGKSSLLNAI 193
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant
staphylococcus aureus, oxidor thioredoxin fold,
structural genomics, PSI-2; HET: MSE; 1.50A
{Staphylococcus aureus subsp}
Length = 112
Score = 25.5 bits (56), Expect = 7.9
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 32 CPISRTVMSRISGYVAQQDFLIEELTVLEH 61
CPIS + + ++ ++D L V +
Sbjct: 36 CPISANAYDQFNKFLYERDMDGYYLIVQQE 65
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 26.2 bits (57), Expect = 8.1
Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 18/197 (9%)
Query: 3 PSGAGKTTLLAALN-----KRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELT 57
+G+GKTTL V + + P ++ + +V ++ + E
Sbjct: 22 TAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSI--DVREFVTVEEIMREGYG 79
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
+ M++ +L + + + + I+ Q++ + ++
Sbjct: 80 PNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL----MEN 135
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
L P +++ +P + L + R+ T K D +S
Sbjct: 136 LPYPLVVYISDPEILKK--PNDYCFVRFFALLIDLRLGA-----TTIPALNKVDLLSEEE 188
Query: 178 HGGLLAYHGQVSKVLKH 194
Y + +
Sbjct: 189 KERHRKYFEDIDYLTAR 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 25.7 bits (57), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 7/21 (33%)
Query: 5 GAGKTTLLAALNKRVKGLVQG 25
GAGKTTL +G++QG
Sbjct: 43 GAGKTTL-------TRGMLQG 56
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in
complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
sapiens} PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 25.6 bits (57), Expect = 9.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 4 SGAGKTTLLAALNKR 18
SGAGKTT+ AL +
Sbjct: 14 SGAGKTTVSMALEEY 28
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein,
GTP binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 26.0 bits (58), Expect = 9.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 5 GAGKTTLL 12
GAGKTTLL
Sbjct: 14 GAGKTTLL 21
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.386
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,874,564
Number of extensions: 165510
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 151
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)