RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4235
(197 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 109 bits (273), Expect = 3e-30
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 14/197 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISR-TVMSRISGYVAQQDFLIEELTV 58
PSG GKTT L + GL + G I ++ R V Q + +TV
Sbjct: 40 PSGCGKTTTLRMIA----GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E++ F K+ ++ E++K + E L I + LSGGQR+R+A+A ++
Sbjct: 96 YENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIV 152
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKFDTVSLLA 177
EP +L DEP + LD+ + +K+L + ++ I H D ++++
Sbjct: 153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE-AMTMGDRIAVMN 211
Query: 178 HGGLLAYHGQVSKVLKH 194
G LL G ++V
Sbjct: 212 RGQLLQ-IGSPTEVYLR 227
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 101 bits (253), Expect = 2e-27
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-------GYVAQQD 50
M PSG+GK+T+L + L + GE+ ++ + ++ G+V QQ
Sbjct: 37 MGPSGSGKSTMLNIIG----CLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHR-RQVQISGLSGGQRK 109
LI LT LE+++ + E K ++ + R + + LSGGQ++
Sbjct: 93 NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152
Query: 110 RLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFE 168
R+A+A L P I+ D+PT LDS + ++ LLK+L E V+ H V
Sbjct: 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVAR 210
Query: 169 KFDTVSLLAHG 179
+ + L G
Sbjct: 211 FGERIIYLKDG 221
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 100 bits (250), Expect = 5e-27
Identities = 46/199 (23%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNG--CPISRTVMSRISGYVAQQDFLIEELT 57
P+GAGKTT L ++ L++ G + + G + ++ Y+ ++ +
Sbjct: 36 PNGAGKTTTLRIIS----TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 91
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQL 117
+E+L+F+A ++ E+ + + R E G+ + + ++S S G ++L +A L
Sbjct: 92 GIEYLRFVAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 148
Query: 118 LTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLA 177
+ P++ DEPT+GLD +A V +LKQ + E ++ V D ++L+
Sbjct: 149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV-SSHNMLEVEFLCDRIALIH 207
Query: 178 HGGLLAYHGQVSKVLKHFA 196
+G ++ G V ++ + +
Sbjct: 208 NGTIVE-TGTVEELKERYK 225
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 96.6 bits (240), Expect = 3e-25
Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRI----SGYVAQQDFLIEE 55
P+G+GK+TL+ + G ++ G + I+ + + Q ++E
Sbjct: 38 PNGSGKSTLINVIT----GFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93
Query: 56 LTVLEHLQFMAKLTMDRRTTWL----------ELNKTITRVMENLGINHRRQVQISGLSG 105
+TVLE+L + L E+ + +++E L ++H + LSG
Sbjct: 94 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 153
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG 165
GQ K + + L+T P+++ DEP G+ A+++ N + +L + + H+
Sbjct: 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI- 212
Query: 166 VFEKFDTVSLLAHGGLLA 183
V D + ++ +G ++A
Sbjct: 213 VLNYIDHLYVMFNGQIIA 230
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 93.8 bits (233), Expect = 2e-24
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 22/202 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPI---SRTVMSRISGYVAQQDFLIEELTVL 59
P+GAGK+TLLA + G +G I G P+ S T ++ Y++QQ V
Sbjct: 33 PNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL- 118
+L V L ++ + + LSGG+ +R+ LA +L
Sbjct: 91 HYLTLHQHDKTRTELLN--------DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142
Query: 119 ------TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT 172
Q+L DEP LD + + +L L + ++ + H
Sbjct: 143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNH-TLRHAHR 201
Query: 173 VSLLAHGGLLAYHGQVSKVLKH 194
LL G +LA G+ +VL
Sbjct: 202 AWLLKGGKMLA-SGRREEVLTP 222
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 91.5 bits (227), Expect = 6e-24
Identities = 40/159 (25%), Positives = 83/159 (52%), Gaps = 9/159 (5%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
P+G GKTTLL ++ +K ++GEI+ NG PI++ + ++ ++ + +++V ++L
Sbjct: 35 PNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYL 91
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
+ +A L + I +E++ + ++ ++ LS G +R+ LA LL +
Sbjct: 92 KAVASLYGVKVNKN-----EIMDALESVEVLDLKK-KLGELSQGTIRRVQLASTLLVNAE 145
Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQ 161
I D+P +D S + V+ + ++ E IVI + +
Sbjct: 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 92.2 bits (229), Expect = 1e-23
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVA--QQDFLIEELTVLE 60
SG GK+TL+ + R + G+IL++G I + + + QQD ++ TV E
Sbjct: 52 MSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE 110
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQLL 118
++ D + NL G + + LSGGQ++RL++A L
Sbjct: 111 NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
P IL DE T+ LD S + + L L+ + R + H+ D + ++ +
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRL--STITHADKIVVIEN 227
Query: 179 G 179
G
Sbjct: 228 G 228
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 90.7 bits (225), Expect = 3e-23
Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 11/200 (5%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISR------TVMSRISGYVAQQDFLIE 54
+ SGAGK+TL+ +N + +G +L++G ++ T R G + Q L+
Sbjct: 37 IGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 95
Query: 55 ELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALA 114
TV ++ +L T E+ + +T ++ +G+ + S LSGGQ++R+A+A
Sbjct: 96 SRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 152
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
L + P++L CDE T+ LD + +++ LLK + + I I V D V+
Sbjct: 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 212
Query: 175 LLAHGGLLAYHGQVSKVLKH 194
++++G L+ VS+V H
Sbjct: 213 VISNGELIE-QDTVSEVFSH 231
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 91.1 bits (226), Expect = 5e-23
Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 21/186 (11%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRISGYVAQQDFLIEELTVL 59
+G+GKT+LL + G ++ G I +G R+ + +Q +++ T+
Sbjct: 70 STGSGKTSLLMLIL----GELEASEGIIKHSG---------RV-SFCSQFSWIMPG-TIK 114
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
E++ F R + ++ + + + N LSGGQR R++LA +
Sbjct: 115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
+ + D P LD ++ V ++ I + K D + +L
Sbjct: 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ 232
Query: 179 GGLLAY 184
G Y
Sbjct: 233 GSSYFY 238
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 89.2 bits (221), Expect = 1e-22
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 12/198 (6%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-GYVAQQDFLIEEL 56
+ PSG GK+TLL + GL G++ + ++ T + G V Q L L
Sbjct: 32 VGPSGCGKSTLLRMIA----GLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
+V E++ F KL ++ +N+ + +V E L + H + LSGGQR+R+A+
Sbjct: 88 SVAENMSFGLKLAGAKKE---VINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 144
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
L+ EP + DEP + LD+ + + +L + + D + +L
Sbjct: 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 204
Query: 177 AHGGLLAYHGQVSKVLKH 194
G + G+ ++ +
Sbjct: 205 DAGRVAQ-VGKPLELYHY 221
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 89.5 bits (222), Expect = 1e-22
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 9/184 (4%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMS---RISGYVAQQDFLIEELT 57
+ SG+GK+T+ + + R + +G IL++G + ++ V+Q L +
Sbjct: 47 VGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 105
Query: 58 VLEHLQFMAKLTMDRRTTWLELNKTITRVMENL--GINHRRQVQISGLSGGQRKRLALAV 115
+ + + + G++ LSGGQR+R+A+A
Sbjct: 106 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
LL + IL DE T+ LD+ S + L +L ++R + H+ E+ D + +
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEQADEIVV 222
Query: 176 LAHG 179
+ G
Sbjct: 223 VEDG 226
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 86.9 bits (215), Expect = 8e-22
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT----VMSRISGYVAQQDFLIEE 55
+GAGKTT L+A+ GLV+ G+I+ NG I+ + V + + E
Sbjct: 40 ANGAGKTTTLSAIA----GLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95
Query: 56 LTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENL-GINHRRQVQISGLSGGQRKRLALA 114
LTV E+L A D+ + + + + + R + LSGG+++ LA+
Sbjct: 96 LTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVS 174
L++ P++L DEP+ GL + V +++++ E ++ G +
Sbjct: 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGY 210
Query: 175 LLAHGGLLAYHGQVSKVLKH 194
+L G ++ G+ S++L +
Sbjct: 211 VLETGQIVL-EGKASELLDN 229
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 86.8 bits (215), Expect = 1e-21
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----------------RTVMSRISGYV 46
SG+GK+T L +N ++ +G I++NG I+ ++ V
Sbjct: 36 SSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 94
Query: 47 AQQDFLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQ-ISGLSG 105
Q L +TVLE++ + + + + + +GI+ R Q + LSG
Sbjct: 95 FQHFNLWSHMTVLENVMEA--PIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 152
Query: 106 GQRKRLALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSG 165
GQ++R+++A L EP +L DEPT+ LD V+ +++QLA E + ++ H+
Sbjct: 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF- 211
Query: 166 VFEKFDTVSLLAHGGLLAYHGQVSKVLKH 194
V L G + G +V +
Sbjct: 212 ARHVSSHVIFLHQGKIEE-EGDPEQVFGN 239
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 85.7 bits (212), Expect = 3e-21
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVL 59
SG+GK+TL + R G++L++G ++ + R G V Q + L+ +
Sbjct: 37 RSGSGKSTLTKLIQ-RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIID 95
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVME-NLGINHRRQVQISGLSGGQRKRLALAVQLL 118
+++++ +L + E G N Q +GLSGGQR+R+A+A L+
Sbjct: 96 NISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 155
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
P+IL DE T+ LD S + ++ + ++ + R VI H+ + D + ++
Sbjct: 156 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRL--STVKNADRIIVMEK 212
Query: 179 GGLLAYHGQVSKVLKH 194
G ++ G+ ++L
Sbjct: 213 GKIVEQ-GKHKELLSE 227
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 84.2 bits (208), Expect = 1e-20
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 20/205 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPIS-------RTVMSRISGYVAQQD 50
+ PSG GKTT L + GL + G+I + ++ R V Q
Sbjct: 35 LGPSGCGKTTTLRMIA----GLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 51 FLIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR 110
L +TV +++ F KL R+ E+++ + V E LG+ + LSGGQR+R
Sbjct: 91 ALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR 147
Query: 111 LALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEK 169
+AL ++ +PQ+ DEP + LD+ + LK+L + + I H
Sbjct: 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE-AMTM 206
Query: 170 FDTVSLLAHGGLLAYHGQVSKVLKH 194
D ++++ G L G +V
Sbjct: 207 GDRIAVMNRGVLQQV-GSPDEVYDK 230
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 80.3 bits (198), Expect = 3e-19
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS----RTVMSRISGYVAQQDFLIEELTV 58
PSG GK+T+ + L R GEI ++G PI S+I G+V+Q ++ T+
Sbjct: 36 PSGGGKSTIFSLLE-RFYQPTAGEITIDGQPIDNISLENWRSQI-GFVSQDSAIMA-GTI 92
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMEN---LGINHRRQVQISGLSGGQRKRLALAV 115
E+L + + W L+ R +N + +SGGQR+RLA+A
Sbjct: 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152
Query: 116 QLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSL 175
L P+IL DE T LDS S + V L L + R + H+ D +
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL--STIVDADKIYF 209
Query: 176 LAHGGLLA 183
+ G +
Sbjct: 210 IEKGQITG 217
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 78.2 bits (192), Expect = 2e-18
Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 15/198 (7%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSR-ISGYVAQQDFLIEEL 56
+ P+GAGKT L + G G ILL+G ++ + +V Q L +
Sbjct: 32 LGPTGAGKTLFLELIA----GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 57 TVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQ 116
V ++L+F ++ + K + +L I H LSGG+++R+ALA
Sbjct: 88 NVKKNLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARA 141
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLL 176
L+T P+IL DEP + LD + N +L L ++++ + I + D ++++
Sbjct: 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201
Query: 177 AHGGLLAYHGQVSKVLKH 194
G L+ G+ ++ +
Sbjct: 202 MDGKLIQV-GKPEEIFEK 218
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 78.0 bits (192), Expect = 2e-18
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 11/184 (5%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS---RTVMSRISGYVAQQDFLIEELTVL 59
P+G+GK+T+ A L + G++LL+G P+ + R V Q+ + ++
Sbjct: 48 PNGSGKSTVAALLQ-NLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQ 105
Query: 60 EHLQFMAKLTMDRRTTWLELNKT-ITRVMENL--GINHRRQVQISGLSGGQRKRLALAVQ 116
E++ + K+ + L G + S LSGGQR+ +ALA
Sbjct: 106 ENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACES-RIVICAIHQPTSGVFEKFDTVSL 175
L+ +P +L D+ T+ LD+ S V LL + R V+ + E+ D +
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILF 223
Query: 176 LAHG 179
L G
Sbjct: 224 LEGG 227
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 75.8 bits (186), Expect = 1e-17
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRTVMSRIS-GYVAQQDFLIEELTV 58
P+GAGK+ L + G+V+ GE+ LNG I+ R G+V Q L L+V
Sbjct: 32 PTGAGKSVFLELIA----GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
++ + R +E ++ + + E LGI H + + LSGG+R+R+ALA L+
Sbjct: 88 YRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV 142
Query: 119 TEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAH 178
+P++L DEP + +D + ++ L+ + E + I + D V+++ +
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 179 GGLLAYHGQVSKVLKH 194
G ++ G++ ++
Sbjct: 203 GRIVE-KGKLKELFSA 217
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 74.7 bits (183), Expect = 3e-17
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 19/204 (9%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQ---GEILLNGCPISRT------VMSRISGYVAQQDF 51
+ PSGAGKTT + + GL GE+ + ++ R G V Q
Sbjct: 37 LGPSGAGKTTFMRIIA----GLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 52 LIEELTVLEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRL 111
L LT E++ F + + K + V + L I+H LSG Q++R+
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEE---IRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV 149
Query: 112 ALAVQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRI-VICAIHQPTSGVFEKF 170
ALA L+ +P +L DEP + LD+ ++ L+K++ + ++ H P +F
Sbjct: 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIA 208
Query: 171 DTVSLLAHGGLLAYHGQVSKVLKH 194
D V +L G L+ G+ + +
Sbjct: 209 DRVGVLVKGKLVQ-VGKPEDLYDN 231
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 52.5 bits (124), Expect = 5e-09
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 70 MDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKR------LALAVQLLTEPQI 123
+ + + + ++ ++ LSGG+R LA+++ L E +
Sbjct: 246 FTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISL 305
Query: 124 LFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
L DEPT LD ++ ++++ + VI H + + D V
Sbjct: 306 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 353
Score = 26.7 bits (57), Expect = 1.9
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 3 PSGAGKTTLLAAL 15
+G+GK++LL A+
Sbjct: 31 QNGSGKSSLLDAI 43
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 50.1 bits (118), Expect = 4e-08
Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 21/141 (14%)
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLAL----A 114
+E A LT++ +R + LSGG++ AL A
Sbjct: 294 VELAGGNASLTIEDEDEPFNAGIKYHATP-----PLKRFKDMEYLSGGEKTVAALALLFA 348
Query: 115 VQLLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDT-- 172
+ DE LD + + +++ I + +FEK D
Sbjct: 349 INSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406
Query: 173 -VSLLAHGGLLAYHGQVSKVL 192
V SK++
Sbjct: 407 GVYRQQQEN-------SSKII 420
Score = 24.7 bits (52), Expect = 8.5
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 3 PSGAGKTTLLAAL 15
P+G+GK+ ++ A+
Sbjct: 33 PNGSGKSNMMDAI 45
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 47.1 bits (110), Expect = 4e-07
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLA----LAVQ 116
+ A+ T + + + + + + R + LA +++
Sbjct: 162 ASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLY 221
Query: 117 LLTEPQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQP 162
L E +L DEPT LD ++ ++++ + VI H
Sbjct: 222 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 267
Score = 28.2 bits (61), Expect = 0.70
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 3 PSGAGKTTLLAAL 15
+G+GK++LL A+
Sbjct: 31 QNGSGKSSLLDAI 43
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 40.0 bits (92), Expect = 4e-05
Identities = 20/182 (10%), Positives = 39/182 (21%), Gaps = 29/182 (15%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLE 60
G GKTTL+ + +R+ R + F I +
Sbjct: 6 TGEPGVGKTTLVKKIVERLG-KRAIGFWTEEV--------RDPETKKRTGFRIITTEGKK 56
Query: 61 HLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTE 120
+ T + +N A
Sbjct: 57 KIFSSKFFTSKKLVGSYGVNVQYFE-----------------ELAIPILERAYREAKKDR 99
Query: 121 PQILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGG 180
+++ DE + + + + V+ I V + L
Sbjct: 100 RKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAV 156
Query: 181 LL 182
L+
Sbjct: 157 LI 158
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 33.0 bits (74), Expect = 0.013
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1 MSPSGAGKTTLLAALNKRVKGL 22
PS GK+T++ L +R+ L
Sbjct: 8 SGPSAVGKSTVVRCLRERIPNL 29
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 32.3 bits (72), Expect = 0.020
Identities = 18/161 (11%), Positives = 45/161 (27%), Gaps = 5/161 (3%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRIS---GYVAQQDFLIEELTVL 59
P G GKTTL+ ++ +K + R RI ++ + + +
Sbjct: 9 PPGVGKTTLIHKASEVLKSS-GVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLE 67
Query: 60 EHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLT 119
+ V+ N + ++ + + L + +
Sbjct: 68 PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127
Query: 120 EPQILFCDEPT-TGLDSYSANNVVNLLKQLACESRIVICAI 159
Q L G + L++++ + + +
Sbjct: 128 VRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNV 168
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 31.8 bits (71), Expect = 0.032
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEI 27
PSGAGK+TLL L + + +
Sbjct: 6 SGPSGAGKSTLLKKLFQEHSSIFGFSV 32
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 31.4 bits (70), Expect = 0.037
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 1 MSPSGAGKTTLLAALNKR 18
PSG GK+TLL L
Sbjct: 7 SGPSGTGKSTLLKKLFAE 24
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 31.3 bits (70), Expect = 0.044
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 1 MSPSGAGKTTLLAALNKR 18
+PSGAGK++L+ AL K
Sbjct: 8 SAPSGAGKSSLIQALLKT 25
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 31.0 bits (69), Expect = 0.055
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 1 MSPSGAGKTTLLAALNKR 18
+ G G+ + L +
Sbjct: 9 LGAHGVGRRHIKNTLITK 26
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 29.7 bits (65), Expect = 0.17
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEI 27
+GK+ L+ L E
Sbjct: 15 GESSGKSVLVNKLAAVFNTTSAWEY 39
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.6 bits (65), Expect = 0.18
Identities = 8/70 (11%), Positives = 20/70 (28%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
G G TT ++ +++ + V + + + + +
Sbjct: 9 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRI 68
Query: 63 QFMAKLTMDR 72
Q MA +
Sbjct: 69 QKMAGRKIAE 78
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.4 bits (62), Expect = 0.37
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 1 MSPSGAGKTTLLAALNKR 18
S AGK+ ++ L
Sbjct: 9 NGGSSAGKSGIVRCLQSV 26
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.5 bits (62), Expect = 0.38
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 1 MSPSGAGKTTLLAALNKR 18
P+G GK+T L +
Sbjct: 8 TGPAGVGKSTTCKRLAAQ 25
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 28.4 bits (62), Expect = 0.46
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
G GKT++ + + G L + + +IEE L
Sbjct: 13 TPGTGKTSMAEMIAAELDGFQ----HLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLL 68
Query: 63 QFMAKLTMDRRTTWLE 78
FM + + R ++
Sbjct: 69 DFMEPIMVSRGNHVVD 84
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.7 bits (60), Expect = 0.67
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 1 MSPSGAGKTTLLAALNKR 18
M SG+GK+ + + + +
Sbjct: 12 MGVSGSGKSAVASEVAHQ 29
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.8 bits (60), Expect = 0.68
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 3 PSGAGKTTLLAALNKR 18
+GK + AL
Sbjct: 14 YMNSGKDAIARALQVT 29
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.6 bits (60), Expect = 0.70
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 1 MSPSGAGKTTLLAALNKR 18
G+GK+T+ AL
Sbjct: 10 SGHPGSGKSTIAEALANL 27
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 27.7 bits (60), Expect = 0.70
Identities = 19/114 (16%), Positives = 36/114 (31%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQF 64
GAGK TL+ L+ + + L ++V + I+ + +V
Sbjct: 10 GAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATL 69
Query: 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLL 118
A T L + V+ + + + L + A VQ +
Sbjct: 70 FALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRI 123
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.5 bits (60), Expect = 0.71
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 3 PSGAGKTTLLAALNKRVKG 21
+GKTTL+
Sbjct: 9 YKHSGKTTLMEKWVAAAVR 27
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.6 bits (60), Expect = 0.80
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 3 PSGAGKTTLLAALNKRVK 20
SG GKTTLL L +
Sbjct: 10 WSGTGKTTLLKKLIPALC 27
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 27.7 bits (60), Expect = 0.90
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 127 DEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTV 173
DE + LD Y+A LLK+ + ++ I H V E D +
Sbjct: 248 DEVDSPLDDYNAERFKRLLKENSKHTQ-FIVITHNK--IVMEAADLL 291
Score = 24.6 bits (52), Expect = 9.4
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 3 PSGAGKTTLLAALN 16
P+G+GK+ ++ A+
Sbjct: 32 PNGSGKSNIIDAIK 45
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,
IlvH {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 25.7 bits (57), Expect = 1.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 38 VMSRISGYVAQQDFLIEELTVLE 60
VM +++ A++ F I +TV E
Sbjct: 16 VMRKVANLFARRGFNISSITVGE 38
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.6 bits (57), Expect = 1.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQ 24
G+GK+T + G
Sbjct: 10 CPGSGKSTWAREFIAKNPGFYN 31
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.8 bits (59), Expect = 1.4
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILL----NGCPISRTVMSRISGYVAQQDFLI 53
SG GK+ L +R L+ + + + I +S + + I
Sbjct: 22 DSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGI 76
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
IlvH {Escherichia coli [TaxId: 562]}
Length = 76
Score = 25.4 bits (56), Expect = 1.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 38 VMSRISGYVAQQDFLIEELTVLE 60
+SR+ G +Q+ + IE LTV
Sbjct: 14 ALSRVIGLFSQRGYNIESLTVAP 36
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.9 bits (58), Expect = 1.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 1 MSPSGAGKTTLLAALNK 17
+ +G+GKTTL +
Sbjct: 6 VGTAGSGKTTLTGEFGR 22
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.4 bits (58), Expect = 1.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILL 29
SG GK+ L KR LV + +
Sbjct: 23 DSGIGKSETALELIKRGHRLVADDNVE 49
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 1.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 3 PSGAGKTTLLAALNKRVK 20
SGAGKTT+ AL + +
Sbjct: 27 LSGAGKTTVSMALEEYLV 44
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.3 bits (56), Expect = 2.1
Identities = 13/79 (16%), Positives = 17/79 (21%), Gaps = 10/79 (12%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
S +GKTTL L L IS V V +
Sbjct: 30 LSRSGKTTLANQL----------SQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEY 79
Query: 63 QFMAKLTMDRRTTWLELNK 81
++ K
Sbjct: 80 YYLQWDVEWLTHQLFRQLK 98
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 26.5 bits (58), Expect = 2.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 3 PSGAGKTTLLAALNKRVKG 21
SG GKTTL + + G
Sbjct: 22 LSGTGKTTLSTDPERPLIG 40
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
{Escherichia coli [TaxId: 562]}
Length = 511
Score = 26.6 bits (58), Expect = 2.3
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 132 GLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLLAYHGQ 187
GL +Y V + + + + + EK+D + GG Y Q
Sbjct: 427 GLQNYGQKEVAMDISWHFLTN---VQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQ 479
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 26.0 bits (56), Expect = 2.5
Identities = 11/102 (10%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Query: 1 MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
+ AGK T + ++ + + G++L + + + + +EL +
Sbjct: 6 LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 59 LEHLQFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQI 100
+ +A+ +TI + +
Sbjct: 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVL 107
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.1 bits (56), Expect = 2.7
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 3 PSGAGKTTLLAALNKR 18
G+GKTT L K
Sbjct: 17 NIGSGKTTYLNHFEKY 32
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.1 bits (56), Expect = 2.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 3 PSGAGKTTLLAALNKRVK 20
G GK+T+LA + + +
Sbjct: 9 IPGVGKSTVLAKVKEILD 26
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 77
Score = 24.6 bits (54), Expect = 3.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 38 VMSRISGYVAQQDFLIEELTVLE 60
+SR++G + + + IE L+V
Sbjct: 15 ALSRVAGLFSARGYNIESLSVAP 37
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.9 bits (55), Expect = 3.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 3 PSGAGKTTLLAALNKR 18
P GAGK+T+ L ++
Sbjct: 10 PMGAGKSTIGRQLAQQ 25
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 25.7 bits (56), Expect = 3.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 3 PSGAGKTTLLAALNKR 18
SG GK+ L +
Sbjct: 23 RSGIGKSECALDLINK 38
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.7 bits (55), Expect = 3.5
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 1 MSPSGAGKTTLLAAL-NKRVKGLVQ 24
P +GKT+LL L V+ V
Sbjct: 9 AGPQNSGKTSLLTLLTTDSVRPTVV 33
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 25.7 bits (56), Expect = 3.7
Identities = 5/38 (13%), Positives = 8/38 (21%), Gaps = 5/38 (13%)
Query: 45 YVAQQDFLIEE-----LTVLEHLQFMAKLTMDRRTTWL 77
Y + L + F + WL
Sbjct: 189 YGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLPVWL 226
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 25.3 bits (54), Expect = 4.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 3 PSGAGKTTLLAALNKR 18
G GKTTL L +
Sbjct: 12 TPGVGKTTLGKELASK 27
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 24.2 bits (52), Expect = 4.6
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 83 ITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
+ + I ++++ R RL A + L
Sbjct: 36 YETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGP 75
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 25.3 bits (54), Expect = 4.6
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 9/99 (9%)
Query: 6 AGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQFM 65
GKTTL+ A+ E+ + M+ GY A+ + + E
Sbjct: 19 HGKTTLVQAITGIWTSKHSEEL--------KRGMTIKLGY-AETNIGVCESCKKPEAYVT 69
Query: 66 AKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLS 104
+ ++ G +SG +
Sbjct: 70 EPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAA 108
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 25.4 bits (54), Expect = 4.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 3 PSGAGKTTLLAALNKR 18
PSGAGK TL A+ +
Sbjct: 11 PSGAGKGTLCKAMAEA 26
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.5 bits (54), Expect = 4.7
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDF 51
G GKT L L + K + I R + I +
Sbjct: 51 RPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNI 99
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the
transcription factor MotA {Bacteriophage T4 [TaxId:
10665]}
Length = 108
Score = 24.6 bits (53), Expect = 5.1
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 8 KTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGY 45
++ LA L KR G+ EI NG RI GY
Sbjct: 32 RSNYLAILEKRTNGIRNFEINNNG-------NMRIFGY 62
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.1 bits (54), Expect = 5.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 3 PSGAGKTTLLAALNKRVK 20
+G GKTT +A L + +
Sbjct: 14 VNGVGKTTTIAKLGRYYQ 31
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 25.3 bits (54), Expect = 5.5
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPIS 35
+ +GK+++ A + + + +S
Sbjct: 10 GTASGKSSVCAKIVQLLGQNEVDYRQKQVVILS 42
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.0 bits (54), Expect = 5.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 3 PSGAGKTTLLAALNKRVK 20
+G GKTT + L ++ +
Sbjct: 17 VNGVGKTTTIGKLARQFE 34
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 25.0 bits (53), Expect = 5.7
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 3 PSGAGKTTLLAALNKR 18
P+ +GK+T+ + K
Sbjct: 11 PASSGKSTVAKIIAKD 26
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.0 bits (53), Expect = 5.7
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 13/183 (7%)
Query: 3 PSGAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHL 62
G+GKT LA + L E LNG I + ++ L E L
Sbjct: 44 EFGSGKTQ-LAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 102
Query: 63 QFMAKLTMDRRTTWLELNKTITRVMENLGINHRRQVQISGLSGGQRKRLALAVQLLTEPQ 122
+ + + L + ++ L R + S L + +
Sbjct: 103 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS------------LTSHFR 150
Query: 123 ILFCDEPTTGLDSYSANNVVNLLKQLACESRIVICAIHQPTSGVFEKFDTVSLLAHGGLL 182
+ + L +LA I + +Q + F + G +L
Sbjct: 151 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 210
Query: 183 AYH 185
A+
Sbjct: 211 AHS 213
>d1lnla2 b.112.1.1 (A:305-405) C-terminal domain of mollusc
hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
Length = 101
Score = 24.2 bits (53), Expect = 5.8
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 83 ITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILF 125
IT V+E+ G++ ++ + ++ P +++
Sbjct: 57 ITDVLESKGLDVHDVFDIKITQTSWDNE-----DISTDRFPPPSVIY 98
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 25.0 bits (53), Expect = 5.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 5 GAGKTTLLAALNKRVKG 21
AGK+T + L + +
Sbjct: 12 AAGKSTFVNILKQLCED 28
>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc
hemocyanin {Giant octopus (Octopus dofleini) [TaxId:
267067]}
Length = 101
Score = 24.2 bits (53), Expect = 6.3
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 83 ITRVMENLGINH----RRQVQISGLSGGQRKRLALAVQLLTEPQILF 125
IT +++L ++ +V I G+ G L+ + L+ P +
Sbjct: 57 ITTSLKHLRLDAHDDFDIKVTIKGIDGH-----VLSNKYLSPPTVFL 98
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 25.0 bits (53), Expect = 6.3
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 5 GAGKTTLLAALNKRVK 20
GK+T + L K
Sbjct: 12 AVGKSTFVKLLTKTYP 27
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 24.9 bits (54), Expect = 6.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 3 PSGAGKTTLLAALNKRVKGL 22
SGAG +T+ ++ +
Sbjct: 12 SSGAGTSTVKHTFDQIFRRE 31
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 24.9 bits (53), Expect = 6.8
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 4 SGAGKTTLLAALNKRVKGLVQGEILLNG 31
GKT + L + + + N
Sbjct: 11 PARGKTYISKKLTRYLNFIGVPTREFNV 38
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 24.9 bits (53), Expect = 6.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 5 GAGKTTLLAALNKRVKGL 22
GAGKTTLL + G
Sbjct: 13 GAGKTTLLRHILNEQHGY 30
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 24.0 bits (52), Expect = 7.2
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 2 SPSGAGKTTLLAALNKRVKGLVQ--GEILLNGCPISRTVMSRISG 44
+ + G +L+ +L + V L + N ++ + SR S
Sbjct: 10 NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTH-IESRPSR 53
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 24.9 bits (53), Expect = 7.5
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 3 PSGAGKTTLLAALN 16
+G+GK+ + A+
Sbjct: 34 ANGSGKSNIGDAIL 47
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 24.7 bits (53), Expect = 7.5
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 3 PSGAGKTTLLAALNKRVK 20
G+GKTT A L K
Sbjct: 18 LQGSGKTTTAAKLALYYK 35
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 24.6 bits (52), Expect = 8.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 3 PSGAGKTTLLAAL 15
+GAGK+T +AA
Sbjct: 32 GNGAGKSTTMAAF 44
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 24.6 bits (53), Expect = 8.6
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 5 GAGKTTLLAALNKR 18
G GKTT
Sbjct: 15 GIGKTTAAEEFLHH 28
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2),
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 341
Score = 24.7 bits (53), Expect = 9.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 1 MSPSGAGKTTLLAALNKRVKGLVQGEI 27
++ GK+TL +L +R + +
Sbjct: 23 IAHVDHGKSTLTDSLVQRAGIISAAKA 49
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 24.5 bits (52), Expect = 9.4
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 5 GAGKTTLLAALNKRVKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTVLEHLQF 64
GAGKTT + + ++ L +++ P + ++ L + E +
Sbjct: 12 GAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSL-----LLDIKSVGDEVITD 66
Query: 65 MAKLTMDRRTTWLELNKTITRVMENLGINHRRQ 97
A++ M + I + N +
Sbjct: 67 KAEVLMFYAARVQLVETVIKPALANGTWVIGDR 99
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 24.5 bits (52), Expect = 9.5
Identities = 8/75 (10%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 1 MSPSGAGKTTLLAALNKR--VKGLVQGEILLNGCPISRTVMSRISGYVAQQDFLIEELTV 58
+GK T + + + + G++L R ++ + + +E+ V
Sbjct: 9 SGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVV 68
Query: 59 LEHLQFMAKLTMDRR 73
+ + +
Sbjct: 69 NMVKERLRQPDAQEN 83
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 24.7 bits (53), Expect = 9.6
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 1 MSPSGAGKTTLLAAL 15
+ AGKTT +
Sbjct: 12 AAHIDAGKTTTTERI 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.386
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,560
Number of extensions: 29167
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 100
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)