BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4236
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
++KDL G + + DS G+T LHY ++ GHK++VK +I+ +N +D+D G+T LH
Sbjct: 19 RVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD--VNAKDSD-GRTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA + I + + S G+T LH AA + I +L++ GA + D D
Sbjct: 76 YAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
TP LA + E+ LEK
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEK 157
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
++KDL G + + DS G+T LH+ + GHK+VVK +I+ +N +D+D G+T LH
Sbjct: 19 RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNAKDSD-GRTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA + + + + S G+T LH AA + + +L++ GA + D D
Sbjct: 76 HAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
TP LA + E+ LEK
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEK 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
++KDL G + DS G+T LHY + GHK++VK +++ N +D+D G+T LH
Sbjct: 19 RVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP--NAKDSD-GRTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA + I + L S G+T LH AA + I +L++ GA D D
Sbjct: 76 YAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
TP LA + E+ LEK
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEK 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
++KDL G + + DS G+T LH + GHK+VVK +++ N +D+D G+T LH
Sbjct: 19 RVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP--NAKDSD-GKTPLH 75
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA + + + L S G+T LH AA + + +L++ GA D D
Sbjct: 76 LAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Query: 186 SNTPRALALLANDTELAAYLEK 207
TP LA + E+ LEK
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEK 157
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
G+T LH +R GH +VVK ++ +N +D + G+T LH AA + + L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG 58
Query: 151 S-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
+ G+T LH AA + +L+ GA + KD + TP LA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 68 NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
N +K L G + + D G+T LH +R GH +VVK ++ +N +D + G
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKN-G 68
Query: 128 QTALHKAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGA 177
+T LH AA + + L + G+T LH AA + +L+ GA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH +R GH ++V+ ++ +N +D D G T LH
Sbjct: 17 EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKD-GYTPLH 73
Query: 133 KAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + G T LH AA I +L+ GA + +D
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 186 SNTPRALALLANDTELAAYLEKS 208
TP LA+ + ++A L+K+
Sbjct: 134 GKTPFDLAIDNGNEDIAEVLQKA 156
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ ++A +N +D D G T LH AA I + L +
Sbjct: 10 ARAGQDDEVRILMANGAD--VNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
G T LH AA I +L+ GA + KD D TP LA E+ L K+
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH +R GH ++V+ ++ +N +D D G T LH
Sbjct: 17 EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKD-GYTPLH 73
Query: 133 KAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + G T LH AA I +L+ GA + +D
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 186 SNTPRALALLANDTELAAYLEKS 208
TP LA+ ++A L+K+
Sbjct: 134 GKTPFDLAIREGHEDIAEVLQKA 156
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ ++A +N +D D G T LH AA I + L +
Sbjct: 10 ARAGQDDEVRILMANGAD--VNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
G T LH AA I +L+ GA + KD D TP LA E+ L K+
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +TALH+ GH ++V++++ +N +D D G + LH AA R I L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD-DAGWSPLHIAASAGRDEIVKALL 93
Query: 148 F-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDS 186
+ G T LH AA R I ML+ GGA+ KD YD+
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYG-SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+K L +G + +++ G T LHY S+ H+ V + A + D TA+H
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD----ATAMH 144
Query: 133 KAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
+AA + + LF+ + G T LH A +R LV GAS+ +++ +
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE 204
Query: 186 SNTPRALA 193
TP +A
Sbjct: 205 EKTPLQVA 212
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D+ G T LH + GH ++V+ ++ +N D+ G T L
Sbjct: 29 EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD--VNAVDH-AGMTPLR 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA+F I + L + G T LH AAMF I +L+ GA + +D
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
+R G D V+ ++A +N +D G T LH AA I + L
Sbjct: 22 ARAGRDDEVRILMANGAD--VNAEDA-SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
G T L AA+F I +L+ GA + D + +TP LA + E+ L K+
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +TALH+ GH ++V++++ +N +D D G + LH AA R I L
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD-DAGWSPLHIAASAGRDEIVKALL 94
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
+ G T LH AA R I ML+ GGA+ KD+
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 138
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
+K L +G + +++ G T LHY + ++ ++ + + +D+ + TA+H+
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYEA-TAMHR 146
Query: 134 AAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
AA + + L++ + G T LH A +R +LV+ GAS+ +++ +
Sbjct: 147 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE 206
Query: 187 NTPRALA 193
TP +A
Sbjct: 207 KTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +TALH+ GH ++V++++ +N +D D G + LH AA R I L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD-DAGWSPLHIAASAGRDEIVKALL 93
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
+ G T LH AA R I ML+ GGA+ KD+
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
+K L +G + +++ G T LHY + ++ ++ + + +D+ + TA+H+
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP--DAKDHYEA-TAMHR 145
Query: 134 AAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
AA + + L++ + G T LH A +R +LV+ GAS+ +++ +
Sbjct: 146 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE 205
Query: 187 NTPRALA 193
TP +A
Sbjct: 206 KTPLQVA 212
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D+ G T LH + YGH ++V+ ++ +N D G T LH
Sbjct: 29 EVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD--VNAIDI-XGSTPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA+ I + L + G T LH AA+ I +L+ GA + +D
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIA-CAPSSILNMQDNDKGQTAL 131
+++ L + G + + D+ G T LH + YGH ++V+ ++ A + +++ G T L
Sbjct: 29 EVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM----GSTPL 84
Query: 132 HKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
H AA+ I + L + G T LH AA+ I +L+ GA + +D
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 185 DSNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +TALH+ GH ++V++++ +N +D D G + LH AA I L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKD-DAGWSPLHIAASAGXDEIVKALL 93
Query: 148 F-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDS 186
+ G T LH AA R I ML+ GGA+ KD YD+
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 64 HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
H + F QL G + D G + LH + G ++VK ++ + +N
Sbjct: 52 HTEIVEFLLQL------GVPVNDKDDAGWSPLHIAASAGXDEIVKALLV--KGAHVNAV- 102
Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGG 176
N G T LH AA R I M L + TA+H+AA + +L+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162
Query: 177 ASLTVKDYDSNTPRALALLANDTELAAYL 205
AS ++D + NTP LA E A +L
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYG-SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+K L +G + +++ G T LHY S+ H+ V + A + D TA+H
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD----ATAMH 144
Query: 133 KAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
+AA + + LF+ + G T LH A +R LV GAS+ +++ +
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE 204
Query: 186 SNTPRALA 193
TP +A
Sbjct: 205 EKTPLQVA 212
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D VG T LH + +GH ++V+ ++ +N D G T LH
Sbjct: 29 EVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD--VNAYDT-LGSTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA F I + L + G T LH AA I +L+ GA + +D
Sbjct: 86 LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISINNGNEDLAEILQK 167
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
+R G D V+ ++A +N D G T LH AA + I + L + +
Sbjct: 22 ARAGRDDEVRILMANGAD--VNAADV-VGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AA F I +L+ GA + KD + TP LA
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 38/164 (23%)
Query: 33 VLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNLNHF------FFQLKDLHSQGYSLL 85
+L+AA+ GD++ +K L + Q + + I + P HF ++ L G +
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL--HFAAGYNRVSVVEYLLQHGADVH 73
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
+ D G LH YGH +V + ++ +++N+ D W
Sbjct: 74 AKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVAD-------------------LWK 112
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
F T LH+AA + IC +L+ GA T K+ D NTP
Sbjct: 113 F--------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 148
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 38/164 (23%)
Query: 33 VLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNLNHF------FFQLKDLHSQGYSLL 85
+L+AA+ GD++ +K L + Q + + I + P HF ++ L G +
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL--HFAAGYNRVSVVEYLLQHGADVH 71
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
+ D G LH YGH +V + ++ +++N+ D W
Sbjct: 72 AKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVAD-------------------LWK 110
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
F T LH+AA + IC +L+ GA T K+ D NTP
Sbjct: 111 F--------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 146
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 38/164 (23%)
Query: 33 VLKAARVGDIKMLKDLHS-QGYSLKKIPPKDDHPNLNHF------FFQLKDLHSQGYSLL 85
+L+AA+ GD++ +K L + Q + + I + P HF ++ L G +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL--HFAAGYNRVSVVEYLLQHGADVH 69
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
+ D G LH YGH +V + ++ +++N+ D W
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVAD-------------------LWK 108
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
F T LH+AA + IC +L+ GA T K+ D NTP
Sbjct: 109 F--------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 52 GYSLKKIPPKDDHPN-LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI 110
G ++D P ++ F +Q LH+Q D G+TALH +RY D K +
Sbjct: 23 GLETGNSEEEEDAPAVISDFIYQGASLHNQ------TDRTGETALHLAARYSRSDAAKRL 76
Query: 111 IACAPSSILNMQDNDKGQTALHKA 134
+ S+ N+QDN G+T LH A
Sbjct: 77 LEA--SADANIQDN-MGRTPLHAA 97
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 81 GYSLLSIDSVGQTALHYGSRYGHKD---VVKYIIACAPSSILNMQDNDKGQTALHKAAMF 137
G++ L I S L G+ +D V+ I S L+ Q + G+TALH AA +
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS--LHNQTDRTGETALHLAARY 67
Query: 138 KRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTP 189
R L S+ G+T LH A + + +L+ A+ L + +D TP
Sbjct: 68 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 127
Query: 190 RALA 193
LA
Sbjct: 128 LILA 131
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH +R GH ++V+ ++ +N +D D G T LH
Sbjct: 29 EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKD-GYTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + G T LH AA I +L+ GA + +D
Sbjct: 86 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLE 206
T +++ + +LA L+
Sbjct: 146 GKTAFDISIDNGNEDLAEILQ 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ ++A +N +D D G T LH AA I + L +
Sbjct: 22 ARAGQDDEVRILMANGAD--VNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 78
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
G T LH AA I +L+ GA + KD D TP LA E+ L K+
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 70 FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQT 129
+ + ++L GY + D T LH+ + D+VKY I + +I++ D T
Sbjct: 21 IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI--SKGAIVDQLGGDLNST 78
Query: 130 ALHKAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVK 182
LH A S+ + + + G + +H AA F SI L+A G + +
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 183 DYDSNTPRALA 193
D + TP A
Sbjct: 139 DQNGMTPLMWA 149
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSI--CW 144
ID G + +H +++GH +V Y+IA ++M D + G T L AA ++ S+
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQD--VDMMDQN-GMTPLMWAA-YRTHSVDPTR 160
Query: 145 MFLFFSS--------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
+ L F+ TALH A + ++ +L+ GA++ ++ + LA
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 197 NDTELAAYLEKS 208
+ + +L+++
Sbjct: 221 KNVWMINHLQEA 232
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
+R G D V+ ++A +N D KG T LH AA + I + L +
Sbjct: 22 ARAGQDDEVRILMANGAD--VNANDR-KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
G T LH AA+F I +L+ GA + +D T +++ + +LA L+K
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH + Y H ++V+ ++ +N DND G T LH
Sbjct: 29 EVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD--VNAHDND-GSTPLH 85
Query: 133 KAAMFKRRSICWMFL 147
AA+F I + L
Sbjct: 86 LAALFGHLEIVEVLL 100
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 61 KDDHPN-LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSIL 119
++D P ++ F +Q LH+Q D G+TALH +RY D K ++ S+
Sbjct: 33 EEDAPAVISDFIYQGASLHNQ------TDRTGETALHLAARYSRSDAAKRLLEA--SADA 84
Query: 120 NMQDNDKGQTALHKA 134
N+QDN G+T LH A
Sbjct: 85 NIQDN-MGRTPLHAA 98
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 81 GYSLLSIDSVGQTALHYGSRYGHKD---VVKYIIACAPSSILNMQDNDKGQTALHKAAMF 137
G++ L I S L G+ +D V+ I S L+ Q + G+TALH AA +
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS--LHNQTDRTGETALHLAARY 68
Query: 138 KRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTP 189
R L S+ G+T LH A + + +L+ A+ L + +D TP
Sbjct: 69 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 128
Query: 190 RALA 193
LA
Sbjct: 129 LILA 132
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
G+TALH AA + R L+ A ++D TP A+ A+
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 102
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 70 FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQT 129
F +Q LH+Q D G+TALH +RY D K ++ + + N+QDN G+T
Sbjct: 10 FIYQGASLHNQ------TDRTGETALHLAARYSRSDAAKRLLEASADA--NIQDN-MGRT 60
Query: 130 ALHKA 134
LH A
Sbjct: 61 PLHAA 65
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 119 LNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCM 171
L+ Q + G+TALH AA + R L S+ G+T LH A + + +
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 76
Query: 172 LVAGGAS-LTVKDYDSNTPRALA 193
L+ A+ L + +D TP LA
Sbjct: 77 LIRNRATDLDARMHDGTTPLILA 99
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ ++A +N +D D G+T LH AA+ I + L +
Sbjct: 22 ARAGQDDEVRILMANGAD--VNAED-DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK 78
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
G T LH AA++ I +L+ GA + D TP LA A E+ L K
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G+T LH + GH ++V+ ++ +N D G T LH
Sbjct: 29 EVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD--VNAADK-MGDTPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA++ I + L + G T LH AA I +L+ GA + +D
Sbjct: 86 LAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
G+T LH AA+ I +L+ GA + D +TP LA L E+ L K+
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH + GH ++V+ ++ +N +D D G T LH
Sbjct: 29 EVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD--VNARDTD-GWTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + + G T LH AA I +L+ GA + +D
Sbjct: 86 LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D +G T LH ++ GH ++V+ ++ +N DN G T LH
Sbjct: 29 EVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD--VNAWDN-YGATPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + G T LH AA I +L+ GA + +D
Sbjct: 86 LAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ ++A +N D G T LH AA I + L + +
Sbjct: 22 ARAGQDDEVRILMANGAD--VNATDW-LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN 78
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AA I +L+ GA + KDY+ TP LA
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLA 120
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 68 NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
N FF + LHS+ LL D G+ LH+ + ++ ++++ + L+ +D G
Sbjct: 13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 128 QTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
T H A + L+ +++G T LH A K + L+ GA
Sbjct: 73 WTPFHIACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 178 SLTVKDYDSNTP 189
S+ +KD + P
Sbjct: 132 SVRIKDKFNQIP 143
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 68 NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
N FF + LHS+ LL D G+ LH+ + ++ ++++ + L+ +D G
Sbjct: 13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 128 QTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
T H A + L+ +++G T LH A K + L+ GA
Sbjct: 73 WTPFHIACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 178 SLTVKDYDSNTP 189
S+ +KD + P
Sbjct: 132 SVRIKDKFNQIP 143
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 68 NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
N FF + LHS+ LL D G+ LH+ + ++ ++++ + L+ +D G
Sbjct: 13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 128 QTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
T H A + L+ +++G T LH A K + L+ GA
Sbjct: 73 WTPFHIACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 178 SLTVKDYDSNTP 189
S+ +KD + P
Sbjct: 132 SVRIKDKFNQIP 143
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH + +GH ++V+ ++ +N +D+ G T LH
Sbjct: 29 EVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD--VNAKDS-LGVTPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L S G T LH AA I +L+ GA + +D
Sbjct: 86 LAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
G T LH AA F I +L+ GA + KD TP LA E+ L K+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 91 GQTALHYGSRYGHKDVVKYIIA-CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF--- 146
G TALH + H+ + +++ A L++Q ND GQTALH AA+ S
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA 67
Query: 147 ----LFFSSRGQTALHKAAMFKRRSICCMLV 173
L G TALH A + + C+L+
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSR----------GQTALHKAAMFKRRSICCMLV 173
+ G TALH A + + L FS+ GQTALH AA+ S L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 174 AGGASLTVKDYDSNT 188
A GA + V + +T
Sbjct: 66 AAGAGVLVAERGGHT 80
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 123 DNDKGQTALHKAAMFKRRSICWMFLFFSSR--------GQTALHKAAMFKRRSICCMLVA 174
+N G T LH A + K + + + G+T LH A + S+ +L+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 175 GGASLTVKDYDSNTPRALALLANDTELAAYL 205
GA T + Y TP ALL + LA L
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 79 SQGYSLLSI-DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMF 137
S G+ L + + +GQTALH + G V+ + A ++ + G TALH A
Sbjct: 32 SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER---GGHTALHLACRV 88
Query: 138 KRRSICWMFL 147
+ + + L
Sbjct: 89 RAHTCACVLL 98
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 91 GQTALHYGSRYGHKDVVKYIIA-CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF--- 146
G TALH + H+ + +++ A L++Q ND GQTALH AA+ S
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA 67
Query: 147 ----LFFSSRGQTALHKAAMFKRRSICCMLV 173
L G TALH A + + C+L+
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSR----------GQTALHKAAMFKRRSICCMLV 173
+ G TALH A + + L FS+ GQTALH AA+ S L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 174 AGGASLTVKDYDSNT 188
A GA + V + +T
Sbjct: 66 AAGAGVLVAERGGHT 80
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 123 DNDKGQTALHKAAMFKRRSICWMFLFFSSR--------GQTALHKAAMFKRRSICCMLVA 174
+N G T LH A + K + + + G+T LH A + S+ +L+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 175 GGASLTVKDYDSNTPRALALLANDTELAAYL 205
GA T + Y TP ALL + LA L
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 79 SQGYSLLSI-DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMF 137
S G+ L + + +GQTALH + G V+ + A ++ + G TALH A
Sbjct: 32 SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER---GGHTALHLACRV 88
Query: 138 KRRSICWMFL 147
+ + + L
Sbjct: 89 RAHTCACVLL 98
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D+ G T LH + GH ++V+ ++ +N D G T LH
Sbjct: 29 EVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD--VNASDL-TGITPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + + G T LH AA + I +L+ GA + +D
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLE 206
T +++ + +LA L+
Sbjct: 146 GKTAFDISIDNGNEDLAEILQ 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSS------- 151
+R G D V+ ++A +N DND G T LH AA I + L +
Sbjct: 22 ARAGQDDEVRILMANGAD--VNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNASDL 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AA I +L+ GA + D D +TP LA
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D VG T LH + +GH ++V+ ++ D+ G T LH
Sbjct: 29 EVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV---NADDSLGVTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA + + L + G T LH AA I +L+ GA + +D
Sbjct: 86 LAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D+ G T LH +R GH ++V+ ++ +N D G T LH
Sbjct: 29 EVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD--VNALDF-SGSTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + + G T LH AA I +L+ GA + +D
Sbjct: 86 LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLE 206
T +++ + +LA L+
Sbjct: 146 GKTAFDISIDNGNEDLAEILQ 166
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
+R G D V+ ++A +N +D G T LH AA I + L
Sbjct: 22 ARAGQDDEVRILMANGAD--VNAEDT-YGDTPLHLAARVGHLEIVEVLLKNGADVNALDF 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AA I +L+ GA + D +TP LA
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDK-GQTAL 131
+++ L + G + + D+ G T LH + GH ++V+ ++ ++ +D G T L
Sbjct: 29 EVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA----DVDASDVFGYTPL 84
Query: 132 HKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
H AA + I + L S G T LH AA + I +L+ GA + +D
Sbjct: 85 HLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144
Query: 185 DSNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
G+T LH +R GH +VVK ++ +N +D + G+T LH AA + + L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG 58
Query: 151 S-------RGQTALHKAAMFKRRSICCMLVAGGA 177
+ G+T LH AA + +L+ GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 68 NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKG 127
N +K L G + + D G+T LH +R GH +VVK ++ +N +D + G
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKN-G 68
Query: 128 QTALHKAAMFKRRSICWMFL 147
+T LH AA + + L
Sbjct: 69 RTPLHLAARNGHLEVVKLLL 88
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G+T LH AA + +L+ GA + KD + TP LA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 36 AARVGDIKMLKDLHSQGYSLKKIPPKDDHP----NLNHFFFQLKDLHSQGYSLLSIDSVG 91
AAR G ++++K L G + P N +K L G + + D G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 92 QTALHYGSRYGHKDVVKYIIACA 114
+T LH +R GH +VVK ++
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAG 91
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+D G TAL++ GHKD+V+ + P+ LN Q N G TALH AA I +
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLF-TQPNIELNQQ-NKLGDTALHAAAWKGYADIVQLL 159
Query: 147 LFFSSR 152
L +R
Sbjct: 160 LAKGAR 165
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 67 LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDK 126
++ F +Q LH+Q D G+TALH +RY D K ++ + + + QDN
Sbjct: 4 ISDFIYQGASLHNQ------TDRTGETALHLAARYSRSDAAKRLLEASADAXI--QDN-M 54
Query: 127 GQTALHKAAMFKRRSICWMFL 147
G+T LH A + + + L
Sbjct: 55 GRTPLHAAVSADAQGVFQILL 75
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 119 LNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCM 171
L+ Q + G+TALH AA + R L S+ G+T LH A + + +
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQI 73
Query: 172 LVAGGAS-LTVKDYDSNTPRALA 193
L+ A+ L + +D TP LA
Sbjct: 74 LLRNRATDLDARMHDGTTPLILA 96
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
+R G D V+ ++A +N +D G T LH AAM I + L +
Sbjct: 22 ARAGQDDEVRILMANGAD--VNAEDK-VGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
G+T LH AM+ I +L+ GA + +D T +++ + +LA L+K
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 33 VLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP----NLNHFFFQLKDLHSQGYSLLSID 88
+L+AAR G ++ L + G + P +N ++ L G + +ID
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 89 SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
++G+T LH + YGH ++V+ ++ +N QD
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGAD--VNAQD 110
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
GQTAL +G DVVK ++AC +N+QD+D G TAL A + I + L
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEAD--VNVQDDD-GSTALMCACEHGHKEIAGLLLAVP 239
Query: 151 S--------RGQTALHKAAMFKRRSICCML 172
S G TAL A + I ML
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D G TAL +GHK++ ++A PS +++ D D G TAL A + I M
Sbjct: 213 DDDGSTALMCACEHGHKEIAGLLLA-VPSCDISLTDRD-GSTALMVALDAGQSEIASML 269
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 62 DDHPNL--NHFF-FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSI 118
D HP L H F+ Y + DS G TALHY + + VV+ ++ +
Sbjct: 79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV 138
Query: 119 LNMQDNDKGQTALHKAAMFKRR----SICWMFLF------FSSRGQTALHKAAMFKRRSI 168
L A K + ++ +F S GQTAL A R +
Sbjct: 139 DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDV 198
Query: 169 CCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
L+A A + V+D D +T A E+A L
Sbjct: 199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLL 235
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 89 SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL- 147
+ G T LH +R GH + V ++ S + KG T LH AA + + + + L
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTK---KGFTPLHVAAKYGKVRVAELLLE 167
Query: 148 ------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTEL 201
G T LH A I +L+ G S ++ TP +A N E+
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227
Query: 202 AAYL 205
A L
Sbjct: 228 ARSL 231
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 21/126 (16%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
+K+L +G S + +T LH +R GH +V KY++ + +N + D QT LH
Sbjct: 30 VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDD-QTPLHC 86
Query: 134 AAMFKRRSICWMFL-------FFSSRGQTALHKAA-----------MFKRRSICCMLVAG 175
AA ++ + L ++ G T LH AA + K S CM G
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 176 GASLTV 181
L V
Sbjct: 147 FTPLHV 152
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
G T LH ++ GH V +I ++ G T LH A+ + + L
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 151 SR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
+ G + LH+AA I +L+ GAS D TP A+A
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 93 TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR 152
T LH S GH +VK ++ S ++ N K +T LH AA + L ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 153 -------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE-LAAY 204
QT LH AA ++ +L+ A+ + +TP +A E + A
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 205 LEKS 208
LEK
Sbjct: 133 LEKE 136
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + D G+T LH + GH ++V+ ++ +N D + G T LH
Sbjct: 17 EVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD--VNAVDTN-GTTPLH 73
Query: 133 KAAMFKRRSICWMFLFFS-------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + + G T L+ AA + I +L+ GA + +D
Sbjct: 74 LAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKF 133
Query: 186 SNTPRALALLANDTELAAYLE 206
T +++ + +LA L+
Sbjct: 134 GKTAFDISIDIGNEDLAEILQ 154
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
+R G D V+ ++A + N D+ G+T LH AA I + L +
Sbjct: 10 ARAGQDDEVRILMANGADA--NAYDH-YGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT 66
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AA I +L+ GA + KD TP LA
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLA 108
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH GH ++++ ++ A +N D G T LH
Sbjct: 29 EVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD--VNASDK-SGWTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
AA I + L + + +G T LH AA I +L+ GA + +D
Sbjct: 86 LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKF 145
Query: 186 SNTPRALALLANDTELAAYLEK 207
T +++ + +LA L+K
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G T + + + Y H D+VK +++ S +N++DN++ LH AA I + L
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLS--KGSDINIRDNEEN-ICLHWAAFSGCVDIAEILL 164
Query: 148 F-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
+ G + LH AA R + ++ + +T+K+ + TP A L +
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224
Query: 201 LAAYLEKS 208
A + K+
Sbjct: 225 SALQMSKA 232
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 26/63 (41%)
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
F ++ LH AA IC MLV GA++ D TP A N E YL
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 206 EKS 208
K+
Sbjct: 64 IKA 66
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + ++D+ G T LH + GH ++V+ ++ ++ D G T LH
Sbjct: 29 EVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD--VDAADV-YGFTPLH 85
Query: 133 KAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
AAM I + L F G T LH AA I +L+ GA + +D
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ +IA +N DN G T LH AA+ I + L +
Sbjct: 22 ARAGQDDEVRILIANGAD--VNAVDN-TGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV 78
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AAM I +L+ GA + D +TP LA
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 29/103 (28%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
G T LH ++ GH + VK +++ K A RS
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS--------------------KGADVNARS--------- 39
Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AA I +L+A GA + + D NTP LA
Sbjct: 40 KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
++ S G T LH AA L++ GA + + D NTP LA E+ L
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 68 NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIA 112
N ++K L S+G + + G T LH ++ GH ++VK ++A
Sbjct: 19 NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 173 VAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
+A GA + D D NTP LA+LA L AYL K+
Sbjct: 153 IAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKA 188
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 28/107 (26%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
G+TALHY ++ + +VKY++ S+ + QD D
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSN-KDKQDED------------------------- 312
Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
G+T + AA R + L+ GAS+ D +T R LA N
Sbjct: 313 --GKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANN 357
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSS 151
+R G D V+ ++A +N D D G T LH AA I + L S
Sbjct: 22 TRAGQDDEVRILMANGAD--VNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS 78
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
G+T LH AA I +L+ GA + +D T +++ + +LA L+K
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + ++D G T LH ++ GH ++V+ ++ +N D+ G+T LH
Sbjct: 29 EVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDS-WGRTPLH 85
Query: 133 KAAMFKRRSICWMFLFFSS 151
AA I + L + +
Sbjct: 86 LAATVGHLEIVEVLLEYGA 104
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDND-KGQTALHKAAMFKRRSICWMFL-------FFS 150
+R G D V+ + A ++ ND G T LH AAM I + L
Sbjct: 22 ARAGQDDEVRILTANGA----DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
+ G+T LH AA I +L+ GA + +D T +++ + +LA L+K
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + + D G T LH + GH ++V+ ++ +N N G+T LH
Sbjct: 29 EVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD--VNATGN-TGRTPLH 85
Query: 133 KAAMFKRRSICWMFL 147
AA I + L
Sbjct: 86 LAAWADHLEIVEVLL 100
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 29/139 (20%)
Query: 72 FQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDND--KGQT 129
F+ ++H +G ++G+TALH + Y + + ++ AP + ++ +GQT
Sbjct: 25 FEGCEVHQRG-------AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT 77
Query: 130 ALHKAAMFKRRSICWMFL-------------FFSSR-------GQTALHKAAMFKRRSIC 169
ALH A + + ++ L F R G+ L AA I
Sbjct: 78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137
Query: 170 CMLVAGGASLTVKDYDSNT 188
+L+ GA + +D NT
Sbjct: 138 RLLIEHGADIRAQDSLGNT 156
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ ++A +N D D G T LH AA I + L +
Sbjct: 22 TRAGQDDEVRILMANGAD--VNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
G+T LH AA I +L+ GA + +D T +++ + +LA L+K
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQ 154
G D+V+ II L ND+G TALH A I + F S G
Sbjct: 48 GEFDLVQRIIYEVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 155 TALHKAAMFKRRSICCMLVAGGASLTVKDY 184
T LH AA +C LV GA++ Y
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
G TALH GH ++VK+++ + +N D+D G T LH AA +C
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVN--VNAADSD-GWTPLHCAASCNNVQVC 119
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
+ G TALH A I LV G ++ D D TP A N+ ++ +L +S
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR------ 152
+R G D V+ ++A +N D D G T LH AA I + L +
Sbjct: 22 TRAGQDDEVRILMANGAD--VNAMD-DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI 78
Query: 153 -GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
G+T LH AA I +L+ GA + +D T +++ + +LA L+K
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQ 154
G D+V+ II L ND+G TALH A I + F S G
Sbjct: 48 GEFDLVQRIIYEVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 155 TALHKAAMFKRRSICCMLVAGGASLTVKDY 184
T LH AA +C LV GA++ Y
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
G TALH GH ++VK+++ + +N D+D G T LH AA +C
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVN--VNAADSD-GWTPLHCAASCNNVQVC 119
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
+ G TALH A I LV G ++ D D TP A N+ ++ +L +S
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIA-CAPSSILNMQ-------DNDKGQ 128
LH G + ++DS+GQTALH + GH + +++ + SI+++Q N+ Q
Sbjct: 266 LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQ 325
Query: 129 TALHKAAMFKRRSICWMFLFFSSRG 153
L ++ + + + L S G
Sbjct: 326 QILSESTPMRTSDVDYRLLEASKAG 350
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 93 TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSS 151
T LH + H DV++ + + +N D+ GQTALH+AA+ C + L + S
Sbjct: 249 TPLHVAAERAHNDVMEVLHK--HGAKMNALDS-LGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 35/104 (33%)
Query: 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMF 137
G + + D G LH YGH +V + ++ AC +N D
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-----VNAMD-------------- 121
Query: 138 KRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181
W F T LH+AA R +C +L++ GA T+
Sbjct: 122 -----LWQF--------TPLHEAASKNRVEVCSLLLSHGADPTL 152
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+++ L + G + ++D G T LH ++ GH ++V+ ++ +N +DN G T LH
Sbjct: 29 EVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD--VNAEDN-FGITPLH 85
Query: 133 KAAMFKRRSICWMFL 147
AA+ I + L
Sbjct: 86 LAAIRGHLEIVEVLL 100
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 70 FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
F LK L G + ++DS G +H R GH VV ++ AP S L+ +D
Sbjct: 86 FLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESDLHHRD 136
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 70 FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
F LK L G + ++DS G +H R GH VV ++ AP S L+ +D
Sbjct: 88 FLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---APESDLHHRD 138
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D+ G LH ++ GH VV++++ S++ N KG TA A ++ R + +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Query: 148 FFSSRGQTALH 158
+ G T L
Sbjct: 158 ANGAGGATNLQ 168
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D+ G LH ++ GH VV++++ S++ N KG TA A ++ R + +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Query: 148 FFSSRGQTALH 158
+ G T L
Sbjct: 158 ANGAGGATNLQ 168
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D+ G LH ++ GH VV++++ S++ N KG TA A ++ R + +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Query: 148 FFSSRGQTALH 158
+ G T L
Sbjct: 158 ANGAGGATNLQ 168
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D+ G LH ++ GH VV++++ S++ N KG TA A ++ R + +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARLYGRNEVVSLMQ 157
Query: 148 FFSSRGQTALH 158
+ G T L
Sbjct: 158 ANGAGGATNLQ 168
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
+++ L + G + + D G T LH +R GH +VVK ++ +N QD
Sbjct: 21 EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD--VNAQD 69
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 70 FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA 114
F L LH G L D+ G+ + GH+DV +Y+ A A
Sbjct: 90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 70 FFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA 114
F L LH G L D+ G+ + GH+DV +Y+ A A
Sbjct: 90 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
D+ G LH ++ GH VV++++ S++ N KG TA A ++ R +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARLYGRNEVV 153
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 122 QDNDKGQTALHKAAMFKRRSICW----------MFLFFSSR-GQTALHKAAMFKRRSICC 170
Q + G + LH A + + +++ FL F + QT LH A + + I
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 171 MLVAGGASLTVKDYDSNTPRALA 193
L+ G ++D+ NTP LA
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLA 85
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
G T LH S +G+ +V+ +++ +N Q+ G+TALH A + + + L
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 122 QDNDKGQTALHKAAMFKRRSICWMFLFFS--------SRGQTALHKAAMFKRRSICCMLV 173
Q N++G TALH A SI FL + S G T LH AA IC LV
Sbjct: 49 QPNEEGITALHNAICGANYSIV-DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV 107
Query: 174 AGGASL 179
GA++
Sbjct: 108 QHGAAI 113
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
+ G TALH A SI L+ GA++ D TP A NDT
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT 100
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
G T LH S +G+ +V+ +++ +N Q+ G+TALH A + + + L
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 125 DKGQTALHKAAMFKRRSICW----------MFLFFSSR-GQTALHKAAMFKRRSICCMLV 173
+ G + LH A + + +++ FL F + QT LH A + + I L+
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 174 AGGASLTVKDYDSNTPRALA 193
G ++D+ NTP LA
Sbjct: 63 GAGCDPELRDFRGNTPLHLA 82
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 74 LKDLHSQGYSL-LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALH 132
+ DL +QG L ++D G+T+LH +R+ D K ++ + N QDN G+T LH
Sbjct: 33 ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA--NSQDN-TGRTPLH 89
Query: 133 KAAMFKRRSICWMFLF-----FSSR---GQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
A + + L ++R G T L AA + L+ A + D
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 149
Query: 185 DSNTPRALALLANDTE 200
T A N+TE
Sbjct: 150 SGKTALHWAAAVNNTE 165
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA 114
+++ L + G + + D G T LH +R GH +VVK ++
Sbjct: 39 EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
>pdb|3QAO|A Chain A, The Crystal Structure Of The N-Terminal Domain Of A
Merr-Like Transcriptional Regulator From Listeria
Monocytogenes Egd-E
Length = 249
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 54 SLKKIPPKDDHPNL--NHFFFQLKDLHSQGYSLLSIDSVGQ 92
S++K+ P+ + L +HFF L D H YSL + S+G+
Sbjct: 175 SVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGE 215
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
S G+ LH A + + C+ + GA L +D + P +A+ + ++ L
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
G TAL A R I L++ G+++ KD+ TP +++ +E++ +L
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
S G+ LH A + + C+ + GA L +D + P +A+ + ++ L
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
S G+ LH A + + C+ + GA L +D + P +A+ + ++ L
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 37/159 (23%)
Query: 62 DDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA------- 114
DD+ ++ F + G ++ D+ G LH + G+ D+ +Y+I+
Sbjct: 83 DDNVDMVKFLVE------NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136
Query: 115 -----PSSI-------------LNMQDNDKGQTALHKAAMFKRRSICWMF------LFFS 150
P I +N Q D + + R + W+ + +
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196
Query: 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
G TALH AA + +L+ + +KDYD TP
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP 235
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQ-DNDKGQTALHKAA 135
L + G S +++D GQTA H + ++ ++ A L+++ N G TALH A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 136 MFKRRSICWMFL 147
+ + + L
Sbjct: 125 NTECQETVQLLL 136
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 18/115 (15%)
Query: 112 ACAPSSILNMQD--NDKGQTALHKAAMFK--RRSICWMFLFFSSRGQTALHKAAMFKRRS 167
C P ++LN+ + ND L A R I F RGQTALH A + +
Sbjct: 46 TCLPKALLNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKH 105
Query: 168 ICCMLVAGGASL---------TVKD-----YDSNTPRALALLANDTELAAYLEKS 208
+LVA GA + KD Y P +LA N + YL ++
Sbjct: 106 YVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTEN 160
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
+++ L + G + + D G T LH +R GH ++V+ ++ +N QD
Sbjct: 17 EVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAQD 65
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 9 IHVGLP--SSKHYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYS 54
I GLP ++HYL + +E ++ +L+ A++ D ML+ LH + S
Sbjct: 205 IRRGLPRVEARHYLSVYQDIESHNKALLEFAKI-DFNMLQFLHRKELS 251
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRR 140
G + + DS G T LH + GH ++V+ ++ +N D G T LH AA+ +
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD--VNAYDR-AGWTPLHLAALSGQL 118
Query: 141 SICWMFL 147
I + L
Sbjct: 119 EIVEVLL 125
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTAL 131
G TALHY + Y D +K ++ L N+ G+TAL
Sbjct: 226 GNTALHYAALYNQPDCLKLLLK---GRALVGTVNEAGETAL 263
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
G TALHY + Y D +K ++ L N+ G+TAL A
Sbjct: 207 GNTALHYAALYNQPDCLKLLLK---GRALVGTVNEAGETALDIA 247
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 80 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 117
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 110
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHP 65
+T EG L + + K +D+H +K++ DD P
Sbjct: 78 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,091,337
Number of Sequences: 62578
Number of extensions: 232335
Number of successful extensions: 979
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 279
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)