Query psy4236
Match_columns 208
No_of_seqs 121 out of 2604
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 20:19:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 1E-35 3.5E-40 220.7 20.3 179 26-207 54-244 (253)
2 2f8y_A Notch homolog 1, transl 100.0 3.5E-35 1.2E-39 213.6 21.7 180 26-208 22-213 (223)
3 1oy3_D Transcription factor in 100.0 8.3E-36 2.8E-40 223.9 17.8 183 25-208 5-247 (282)
4 4b93_B Ankyrin repeat domain-c 100.0 1.6E-35 5.6E-40 221.5 18.0 183 23-208 5-207 (269)
5 2xai_A ASB-9, ankyrin repeat a 100.0 4.1E-35 1.4E-39 218.5 19.8 175 28-207 2-187 (261)
6 3b7b_A Euchromatic histone-lys 100.0 1E-34 3.6E-39 213.0 21.0 179 26-207 8-198 (237)
7 1k1a_A B-cell lymphoma 3-encod 100.0 1.3E-34 4.3E-39 212.9 21.3 183 24-207 4-204 (241)
8 3aji_A 26S proteasome non-ATPa 100.0 3.5E-35 1.2E-39 214.7 18.1 179 26-207 37-226 (231)
9 4gpm_A Engineered protein OR26 100.0 1.7E-34 6E-39 201.5 20.1 146 31-208 6-158 (169)
10 2rfa_A Transient receptor pote 100.0 7.1E-35 2.4E-39 213.3 18.8 178 28-207 2-218 (232)
11 1s70_B 130 kDa myosin-binding 100.0 3.6E-35 1.2E-39 222.4 17.7 181 25-208 36-254 (299)
12 1yyh_A HN1;, notch 1, ankyrin 100.0 2.4E-35 8.1E-40 218.8 16.3 185 21-208 2-212 (253)
13 3ljn_A Hypothetical protein; a 100.0 4.9E-35 1.7E-39 227.6 18.6 187 18-207 9-265 (364)
14 3kea_A K1L; tropism, ANK repea 100.0 1E-35 3.5E-40 224.5 13.3 182 22-208 24-217 (285)
15 3hra_A Ankyrin repeat family p 100.0 4E-34 1.4E-38 204.9 20.5 179 27-208 3-200 (201)
16 3d9h_A CDNA FLJ77766, highly s 100.0 2.8E-34 9.7E-39 216.5 20.6 180 24-208 54-244 (285)
17 3utm_A Tankyrase-1; tankyrase, 100.0 1.5E-33 5.2E-38 217.5 21.2 182 25-208 54-302 (351)
18 1n11_A Ankyrin; clathrin, BAND 100.0 1.3E-33 4.3E-38 224.5 20.7 184 21-207 6-200 (437)
19 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-34 5.2E-39 212.4 14.1 180 26-207 43-237 (241)
20 2fo1_E LIN-12 protein; beta-ba 100.0 4.1E-34 1.4E-38 223.3 16.8 183 24-208 161-368 (373)
21 3aji_A 26S proteasome non-ATPa 100.0 3.8E-33 1.3E-37 203.9 20.3 177 29-208 6-194 (231)
22 2dzn_A Probable 26S proteasome 100.0 2.7E-33 9.3E-38 204.2 19.3 164 28-194 35-216 (228)
23 3b7b_A Euchromatic histone-lys 100.0 1.8E-33 6.2E-38 206.3 18.5 178 26-206 41-230 (237)
24 2etb_A Transient receptor pote 100.0 1.4E-34 4.9E-39 214.7 12.2 176 29-207 2-242 (256)
25 1wdy_A 2-5A-dependent ribonucl 100.0 1.2E-32 4E-37 206.7 21.6 177 28-206 38-239 (285)
26 2xai_A ASB-9, ankyrin repeat a 100.0 2E-33 6.9E-38 209.3 17.3 177 25-207 32-218 (261)
27 1ikn_D Protein (I-kappa-B-alph 100.0 4.8E-35 1.6E-39 214.9 8.0 184 24-208 3-206 (236)
28 4g8k_A 2-5A-dependent ribonucl 100.0 1.3E-32 4.4E-37 211.9 20.6 181 26-208 22-295 (337)
29 1wdy_A 2-5A-dependent ribonucl 100.0 3E-32 1E-36 204.4 22.0 178 27-207 3-207 (285)
30 3d9h_A CDNA FLJ77766, highly s 100.0 4.7E-33 1.6E-37 209.9 17.1 176 26-207 89-274 (285)
31 4b93_B Ankyrin repeat domain-c 100.0 3.4E-34 1.2E-38 214.4 10.4 171 25-198 48-230 (269)
32 1n11_A Ankyrin; clathrin, BAND 100.0 1.3E-32 4.6E-37 218.6 20.0 175 30-207 180-365 (437)
33 1oy3_D Transcription factor in 100.0 6.4E-33 2.2E-37 208.1 16.8 172 26-199 42-271 (282)
34 3eu9_A Huntingtin-interacting 100.0 1.1E-32 3.9E-37 202.0 17.5 179 26-207 39-231 (240)
35 2dzn_A Probable 26S proteasome 100.0 5.7E-33 1.9E-37 202.5 15.7 177 29-206 2-194 (228)
36 3jxi_A Vanilloid receptor-rela 100.0 5.1E-33 1.7E-37 206.8 11.6 180 27-208 3-247 (260)
37 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.5E-31 1.2E-35 184.9 19.8 150 27-208 12-168 (169)
38 2pnn_A Transient receptor pote 100.0 5E-33 1.7E-37 208.3 11.0 182 24-207 8-254 (273)
39 2fo1_E LIN-12 protein; beta-ba 100.0 9.2E-33 3.1E-37 215.7 12.4 179 27-208 123-335 (373)
40 3utm_A Tankyrase-1; tankyrase, 100.0 2.9E-31 1E-35 204.6 20.7 185 21-208 16-269 (351)
41 3v31_A Ankyrin repeat family A 100.0 2.3E-31 7.9E-36 185.3 17.8 148 28-207 2-156 (167)
42 2rfm_A Putative ankyrin repeat 100.0 1.2E-31 4.1E-36 190.9 16.2 151 25-207 31-188 (192)
43 1awc_B Protein (GA binding pro 100.0 9E-31 3.1E-35 179.9 18.6 144 29-205 2-152 (153)
44 1ihb_A P18-INK4C(INK6), cyclin 100.0 8.6E-31 2.9E-35 181.4 16.6 148 28-208 4-159 (162)
45 3v30_A DNA-binding protein rfx 100.0 1.8E-30 6.1E-35 181.7 17.3 148 29-207 2-156 (172)
46 2f8y_A Notch homolog 1, transl 100.0 3.7E-31 1.3E-35 192.3 14.2 166 40-208 2-180 (223)
47 1s70_B 130 kDa myosin-binding 100.0 3.1E-31 1.1E-35 200.8 11.8 181 25-205 69-284 (299)
48 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.4E-29 4.7E-34 174.4 18.1 148 28-208 1-155 (156)
49 4hbd_A KN motif and ankyrin re 100.0 4.6E-31 1.6E-35 198.1 10.9 175 30-207 77-271 (276)
50 4g8k_A 2-5A-dependent ribonucl 100.0 7.8E-30 2.7E-34 196.4 18.1 177 24-208 120-323 (337)
51 3twr_A Tankyrase-2; ankyrin re 100.0 6.3E-30 2.2E-34 177.7 15.0 151 26-208 5-162 (165)
52 1sw6_A Regulatory protein SWI6 100.0 4.3E-31 1.5E-35 202.8 9.7 164 25-197 127-327 (327)
53 3kea_A K1L; tropism, ANK repea 100.0 1.1E-30 3.7E-35 197.0 11.4 168 29-207 62-242 (285)
54 3f6q_A Integrin-linked protein 100.0 1.3E-29 4.5E-34 178.4 13.9 150 27-207 3-159 (179)
55 1sw6_A Regulatory protein SWI6 100.0 5.9E-30 2E-34 196.5 9.9 179 22-208 45-305 (327)
56 1ikn_D Protein (I-kappa-B-alph 100.0 9.9E-30 3.4E-34 186.5 9.6 171 24-196 40-229 (236)
57 2vge_A RELA-associated inhibit 100.0 1.2E-31 4.1E-36 196.1 -2.6 175 26-205 18-207 (229)
58 3ljn_A Hypothetical protein; a 100.0 4.7E-29 1.6E-33 193.9 9.5 178 28-206 83-309 (364)
59 2pnn_A Transient receptor pote 100.0 1.5E-28 5.3E-33 183.9 12.0 163 26-191 51-272 (273)
60 3hra_A Ankyrin repeat family p 100.0 1.3E-27 4.4E-32 170.9 15.3 151 23-176 33-201 (201)
61 4gpm_A Engineered protein OR26 100.0 1.4E-27 5E-32 166.4 14.6 128 22-181 30-164 (169)
62 2rfa_A Transient receptor pote 100.0 2.4E-27 8.3E-32 173.2 16.5 139 68-207 13-179 (232)
63 4hbd_A KN motif and ankyrin re 100.0 3.1E-27 1.1E-31 177.3 16.6 150 24-176 106-273 (276)
64 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.3E-28 1.1E-32 178.9 10.5 148 27-207 3-160 (239)
65 1d9s_A Cyclin-dependent kinase 100.0 2.1E-27 7.3E-32 159.9 13.3 123 81-207 2-132 (136)
66 2etb_A Transient receptor pote 99.9 5.1E-27 1.7E-31 174.0 11.4 154 25-181 39-249 (256)
67 3t8k_A Uncharacterized protein 99.9 2.7E-27 9.1E-32 167.6 9.4 146 29-207 6-175 (186)
68 1bi7_B P16INK4A, MTS1, multipl 99.9 6.4E-27 2.2E-31 161.1 10.8 140 25-193 8-151 (156)
69 2jab_A H10-2-G3; HER2, darpin, 99.9 1E-25 3.5E-30 151.6 16.2 125 26-208 11-135 (136)
70 3jxi_A Vanilloid receptor-rela 99.9 1.6E-26 5.4E-31 171.7 10.1 153 27-182 44-254 (260)
71 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-26 4.4E-31 156.2 7.9 123 81-207 1-130 (137)
72 2aja_A Ankyrin repeat family p 99.9 1.8E-28 6.1E-33 190.9 -2.3 180 24-207 87-340 (376)
73 3eu9_A Huntingtin-interacting 99.9 4.4E-25 1.5E-29 161.5 15.6 151 29-181 76-238 (240)
74 2rfm_A Putative ankyrin repeat 99.9 3E-25 1E-29 157.7 13.6 122 84-208 28-156 (192)
75 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9.6E-25 3.3E-29 144.5 15.2 115 90-207 1-122 (126)
76 3v30_A DNA-binding protein rfx 99.9 2.1E-25 7.1E-30 155.8 11.7 134 24-189 31-171 (172)
77 1bi7_B P16INK4A, MTS1, multipl 99.9 3.2E-25 1.1E-29 152.6 10.9 120 85-208 6-133 (156)
78 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.3E-24 7.9E-29 142.6 14.3 119 28-178 1-126 (126)
79 3deo_A Signal recognition part 99.9 1.7E-24 6E-29 152.8 13.6 137 22-207 37-180 (183)
80 1d9s_A Cyclin-dependent kinase 99.9 2.7E-24 9.2E-29 144.6 13.5 120 25-147 8-131 (136)
81 2vge_A RELA-associated inhibit 99.9 5E-25 1.7E-29 160.9 10.7 143 46-191 2-161 (229)
82 3ui2_A Signal recognition part 99.9 2.6E-24 8.7E-29 158.6 13.3 141 23-177 39-184 (244)
83 1ihb_A P18-INK4C(INK6), cyclin 99.9 3E-24 1E-28 148.4 12.7 122 24-178 33-162 (162)
84 3v31_A Ankyrin repeat family A 99.9 6.4E-24 2.2E-28 147.5 14.3 115 90-207 2-123 (167)
85 3f6q_A Integrin-linked protein 99.9 6.9E-24 2.4E-28 149.1 12.6 130 25-186 35-171 (179)
86 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.8E-23 6E-28 145.7 14.4 118 88-208 11-135 (169)
87 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9.3E-25 3.2E-29 160.5 7.1 143 24-198 32-193 (239)
88 3aaa_C Myotrophin, protein V-1 99.9 8.3E-24 2.8E-28 139.8 9.7 111 88-204 4-121 (123)
89 2b0o_E UPLC1; arfgap, structur 99.9 1.2E-23 4.1E-28 159.5 11.2 138 30-199 152-299 (301)
90 1awc_B Protein (GA binding pro 99.9 4E-23 1.4E-27 141.6 12.7 115 26-172 31-152 (153)
91 3twr_A Tankyrase-2; ankyrin re 99.9 5.5E-23 1.9E-27 142.5 12.9 120 87-208 4-130 (165)
92 3ehr_A Osteoclast-stimulating 99.9 1.5E-23 5E-28 152.3 8.0 118 87-207 69-194 (222)
93 3ehr_A Osteoclast-stimulating 99.9 3.1E-23 1.1E-27 150.6 9.4 134 22-187 66-207 (222)
94 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.2E-22 7.5E-27 138.2 12.9 115 91-208 2-123 (156)
95 1dcq_A PYK2-associated protein 99.9 2.9E-21 1E-25 144.8 18.0 181 25-207 62-259 (278)
96 2aja_A Ankyrin repeat family p 99.9 1.3E-24 4.6E-29 169.1 -0.3 162 30-207 66-246 (376)
97 3c5r_A BARD-1, BRCA1-associate 99.9 5.6E-23 1.9E-27 138.3 7.2 116 25-143 6-125 (137)
98 3aaa_C Myotrophin, protein V-1 99.9 2.5E-22 8.4E-27 132.7 9.7 106 26-134 4-113 (123)
99 2b0o_E UPLC1; arfgap, structur 99.9 1.4E-20 4.9E-25 142.6 20.0 173 29-207 91-280 (301)
100 3deo_A Signal recognition part 99.9 5.9E-23 2E-27 144.9 6.2 110 88-201 41-158 (183)
101 3jue_A Arfgap with coiled-coil 99.9 1.7E-21 5.7E-26 151.2 14.9 136 29-196 199-347 (368)
102 3t8k_A Uncharacterized protein 99.9 2.2E-22 7.4E-27 142.3 8.9 119 27-148 36-175 (186)
103 3lvq_E ARF-GAP with SH3 domain 99.9 1.7E-21 5.9E-26 157.2 15.1 126 31-182 134-269 (497)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 7.4E-21 2.5E-25 119.4 11.8 90 90-208 1-90 (93)
105 1dcq_A PYK2-associated protein 99.9 1.9E-20 6.6E-25 140.4 15.6 125 30-180 131-265 (278)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-20 6.3E-25 117.6 11.8 90 28-149 1-90 (93)
107 3ui2_A Signal recognition part 99.8 5.3E-21 1.8E-25 140.8 10.5 115 89-207 43-181 (244)
108 3lvq_E ARF-GAP with SH3 domain 99.8 1.1E-19 3.9E-24 146.6 19.2 116 91-208 132-262 (497)
109 2l6b_A NR1C; ankyrin, consensu 99.8 8.2E-21 2.8E-25 123.8 8.4 102 86-190 4-112 (115)
110 2zgd_A 3 repeat synthetic anky 99.8 1.3E-18 4.4E-23 112.5 10.6 92 85-205 18-109 (110)
111 2l6b_A NR1C; ankyrin, consensu 99.8 3.3E-19 1.1E-23 116.1 7.4 91 26-116 6-100 (115)
112 2zgd_A 3 repeat synthetic anky 99.8 3.8E-18 1.3E-22 110.3 11.4 94 21-146 16-109 (110)
113 2jab_A H10-2-G3; HER2, darpin, 99.8 3.8E-18 1.3E-22 114.4 9.9 93 25-149 43-135 (136)
114 3jue_A Arfgap with coiled-coil 99.7 1.5E-16 5.2E-21 123.4 11.5 105 27-163 233-347 (368)
115 1gp8_A Protein (scaffolding pr 68.8 3.8 0.00013 20.0 2.0 19 32-50 16-34 (40)
116 3mkq_B Coatomer subunit alpha; 55.0 12 0.0004 25.5 3.3 50 128-178 93-144 (177)
117 4g26_A Pentatricopeptide repea 45.9 1.1E+02 0.0038 24.3 8.4 135 32-173 32-198 (501)
118 3zrh_A Ubiquitin thioesterase 44.2 33 0.0011 26.8 4.5 65 34-113 27-91 (454)
119 3zrh_A Ubiquitin thioesterase 25.8 2.4E+02 0.0083 22.1 6.7 23 184-206 67-89 (454)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1e-35 Score=220.72 Aligned_cols=179 Identities=19% Similarity=0.117 Sum_probs=168.2
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCC-CCCcCCCCCccHHHHHHh
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGY-SLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~-~~~~~d~~g~t~l~~a~~ 100 (208)
+..|.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|+++|. +++..+..|.||||+|+.
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 133 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence 567889999999999999999999999999999999999975 456899999999998 899999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV 173 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll 173 (208)
.|+.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+
T Consensus 134 ~~~~~~v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 210 (253)
T 1yyh_A 134 LAVEGMLEDLINSHAD--VNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210 (253)
T ss_dssp HTCSSHHHHHHHTTCC--TTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cChHHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 9999999999999998 7777 47899999999999999999999965 567999999999999999999999
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 174 AGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
++|++++.+|..|.||+++|+.+|+.+++++|.+
T Consensus 211 ~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred HcCCCccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999974
No 2
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.5e-35 Score=213.64 Aligned_cols=180 Identities=19% Similarity=0.118 Sum_probs=168.4
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCC-CCCcCCCCCccHHHHHHh
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGY-SLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~-~~~~~d~~g~t~l~~a~~ 100 (208)
+..+.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|++++. +++..+..|.||||+|+.
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 101 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence 567899999999999999999999999999999999999975 566899999999987 889999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV 173 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll 173 (208)
.|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+
T Consensus 102 ~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 178 (223)
T 2f8y_A 102 LAVEGMLEDLINSHAD--VNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178 (223)
T ss_dssp HTCHHHHHHHHHTTCC--TTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred hCcHHHHHHHHHcCCC--CcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999998 7777 47899999999999999999999955 567899999999999999999999
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 174 AGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
++|++++..|..|.||+++|+.+++.+++++|++.
T Consensus 179 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~ 213 (223)
T 2f8y_A 179 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213 (223)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence 99999999999999999999999999999999863
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8.3e-36 Score=223.89 Aligned_cols=183 Identities=23% Similarity=0.223 Sum_probs=164.8
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCC---CcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYS---LKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY 97 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~---~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~ 97 (208)
.+..|.||||.|+..|+.+++++|+++|++ ++..+..|.+|++ .+..+++++|+++|++++.+|..|.||||+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 84 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 356789999999999999999999999998 7888889999975 566899999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCc---------------------------------------------cccCCCCCCccHHH
Q psy4236 98 GSRYGHKDVVKYIIACAPSSI---------------------------------------------LNMQDNDKGQTALH 132 (208)
Q Consensus 98 a~~~g~~~~~~~ll~~g~~~~---------------------------------------------~~~~~~~~~~t~l~ 132 (208)
|+..|+.+++++|++.|++.. ++.. +..|.||||
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~ 163 (282)
T 1oy3_D 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLH 163 (282)
T ss_dssp HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCHHH
T ss_pred HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCCcCHHH
Confidence 999999999999999876411 3334 467999999
Q ss_pred HHHhhCcHHHHHHHHhcC--------CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q psy4236 133 KAAMFKRRSICWMFLFFS--------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAY 204 (208)
Q Consensus 133 ~a~~~~~~~~~~~l~~~~--------~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 204 (208)
+|+..|+.+++++|++.+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~ 243 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence 999999999999999652 349999999999999999999999999999999999999999999999999999
Q ss_pred HhhC
Q psy4236 205 LEKS 208 (208)
Q Consensus 205 L~~~ 208 (208)
|+++
T Consensus 244 Ll~~ 247 (282)
T 1oy3_D 244 LRAH 247 (282)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9863
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=221.49 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=142.9
Q ss_pred HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCC--------CcccCCCCCCCcc-----chHHHHHHHHHHcCCCCCcCCC
Q psy4236 23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYS--------LKKIPPKDDHPNL-----NHFFFQLKDLHSQGYSLLSIDS 89 (208)
Q Consensus 23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~--------~~~~~~~~~~~~~-----~~~~~~~~~l~~~g~~~~~~d~ 89 (208)
.+.+.++.++|+.||+.|+.++|++|+++|++ ++..+..+.++++ .....+++.|++.|+++|.+|.
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~ 84 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ 84 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence 34566677899999999999999999999876 3445555666654 2234578999999999999999
Q ss_pred CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHh
Q psy4236 90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAM 162 (208)
Q Consensus 90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~ 162 (208)
.|+||||+|+..|+.+++++|++.|++ ++.. +..|.||+++|+..++.+++++|++. +..|.||||+|+.
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~--~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGAN--AGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS 161 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCC--cCcc-CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999998 7766 47899999999999999999999854 5678999999999
Q ss_pred hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
.|+.+++++|++.|++++..+..|.||||+|+.+|+.+++++|+++
T Consensus 162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 207 (269)
T 4b93_B 162 GGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH 207 (269)
T ss_dssp TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999863
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=218.48 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=143.7
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH 103 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~ 103 (208)
.|.||||.|+..|+.+++++|+++|++++..+..|.+|++ .+..+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 4678888888888888888888888888888888888864 456788888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236 104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG 176 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g 176 (208)
.+++++|++.|++ ++.. ..|.||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|++.|
T Consensus 82 ~~~v~~Ll~~g~~--~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 82 WDCVNLLLQHGAS--VQPE--SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp HHHHHHHHHTTCC--SSCS--CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCC--CCCC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 8888888888877 5443 4588888888888888888888854 456778888888888888888888888
Q ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 177 ASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 177 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
++++. +..|.||||+|+.+|+.+++++|++
T Consensus 158 ~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~ 187 (261)
T 2xai_A 158 ADVNQ-GKGQDSPLHAVARTASEELACLLMD 187 (261)
T ss_dssp CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCC-CCCCCChHHHHHHcCCHHHHHHHHH
Confidence 88885 7788888888888888888888875
No 6
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1e-34 Score=212.97 Aligned_cols=179 Identities=22% Similarity=0.296 Sum_probs=142.1
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
+..|.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|+++|++++.++..|.||||+|+..
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 87 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK 87 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence 455778888888888888888888888888888888877754 4567788888888888888888888888888888
Q ss_pred CCHHHHHHHHHcC-CCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236 102 GHKDVVKYIIACA-PSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV 173 (208)
Q Consensus 102 g~~~~~~~ll~~g-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll 173 (208)
|+.+++++|++.| .+ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+
T Consensus 88 ~~~~~~~~Ll~~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 164 (237)
T 3b7b_A 88 GHYEVVQYLLSNGQMD--VNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164 (237)
T ss_dssp TCHHHHHHHHTTTCCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCC--cccC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 8888888888877 44 5555 36678888888888888888888754 455778888888888888888888
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 174 AGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+.|++++..|..|.||+|+|+.+|+.+++++|++
T Consensus 165 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (237)
T 3b7b_A 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS 198 (237)
T ss_dssp TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence 8888888888888888888888888888888775
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.3e-34 Score=212.86 Aligned_cols=183 Identities=20% Similarity=0.189 Sum_probs=152.4
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHH----cCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHS----QGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL 95 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~----~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l 95 (208)
..+..|.||||.|+..|+.+++++|++ .|.+++..+..+.+|++ .+..+++++|+++|++++..|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 456778889999999999999988887 78888888888888864 5568889999999999988888899999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCC--ccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC--------CCCCcHHHHHHhhCC
Q psy4236 96 HYGSRYGHKDVVKYIIACAPSS--ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS--------SRGQTALHKAAMFKR 165 (208)
Q Consensus 96 ~~a~~~g~~~~~~~ll~~g~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~--------~~~~t~l~~A~~~~~ 165 (208)
|+|+..|+.+++++|++.++.. .++.. +..|.||||+|+..++.+++++|++.+ ..|.||||+|+..|+
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccccc-CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 9999999999999999887621 15555 467889999999999999999888552 568899999999999
Q ss_pred HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 166 RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 166 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
.+++++|++.|++++..|..|.||||+|+.+|+.+++++|++
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999999999999888889999999999999999988875
No 8
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.5e-35 Score=214.74 Aligned_cols=179 Identities=20% Similarity=0.252 Sum_probs=166.9
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
+..+.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|++++.+|..|.||||+|+..
T Consensus 37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 116 (231)
T 3aji_A 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 456889999999999999999999999999999999999975 4568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA 174 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~ 174 (208)
|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++
T Consensus 117 ~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 117 NRHEIAVMLLEGGAN--PDAK-DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp TCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC--CCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 999999999999988 7776 47899999999999999999999955 5679999999999999999999999
Q ss_pred CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 175 GGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 175 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+|++++.+|..|.||+++|..+++.+++++|.+
T Consensus 194 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~ 226 (231)
T 3aji_A 194 QGASIYIENKEEKTPLQVAKGGLGLILKRLAEG 226 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence 999999999999999999999999999999875
No 9
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.7e-34 Score=201.49 Aligned_cols=146 Identities=32% Similarity=0.479 Sum_probs=118.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHH
Q psy4236 31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI 110 (208)
Q Consensus 31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~l 110 (208)
++|+.||+.|+.++|+.|+++|+++| .+|..|+||||+|+..++.+++++|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn-----------------------------~~d~~g~t~l~~a~~~~~~~~~~~l 56 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVN-----------------------------ASDSDGRTPLHHAAENGHKEVVKLL 56 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCC-----------------------------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 57999999999999999777666554 5667777778877777777777777
Q ss_pred HHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccC
Q psy4236 111 IACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183 (208)
Q Consensus 111 l~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~ 183 (208)
++.|++ ++.+ +..|+||||+|+..|+.+++++|++. +..|+||||+|+..|+.+++++|++.|++++.+|
T Consensus 57 l~~gad--~~~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 133 (169)
T 4gpm_A 57 ISKGAD--VNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133 (169)
T ss_dssp HHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred Hhcccc--hhhh-ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 777777 6666 36677788887777777777777744 4567888888888888888889999999999999
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 184 YDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 184 ~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
..|+|||++|+.+|+.+++++|+++
T Consensus 134 ~~G~TpL~~A~~~g~~~iv~~Ll~~ 158 (169)
T 4gpm_A 134 SDGRTPLDLAREHGNEEVVKLLEKQ 158 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 8999999999999999999988764
No 10
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=7.1e-35 Score=213.29 Aligned_cols=178 Identities=20% Similarity=0.168 Sum_probs=162.7
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCC-----CcCCCCCccHHHH
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQ-GYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSL-----LSIDSVGQTALHY 97 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~-g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~-----~~~d~~g~t~l~~ 97 (208)
.|.||||.|++.|+.+++++|+++ |++++..+..|.+|++ .+..+++++|++.|+++ +..|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478999999999999999999998 9999999999999975 56789999999999987 6677899999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccccCCC------------CCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHH
Q psy4236 98 GSRYGHKDVVKYIIACAPSSILNMQDN------------DKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALH 158 (208)
Q Consensus 98 a~~~g~~~~~~~ll~~g~~~~~~~~~~------------~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~ 158 (208)
|+..|+.+++++|++.|++ ++..+. ..|.||||+|+..|+.+++++|++. +..|.||||
T Consensus 82 A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 159 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGAS--VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCC--TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred HHHcCCHHHHHHHHhCCCC--CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 9999999999999999988 655531 2699999999999999999999964 577999999
Q ss_pred HHHhhCCHHHH----HHHHhCCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 159 KAAMFKRRSIC----CMLVAGGASL------TVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 159 ~A~~~~~~~~~----~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+|+..|+.+++ ++|++.|+++ +..|..|.||+|+|+.+|+.+++++|++
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999988 9999999998 5889999999999999999999999986
No 11
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-35 Score=222.44 Aligned_cols=181 Identities=22% Similarity=0.201 Sum_probs=166.8
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~ 100 (208)
....+.++|+.||..|+.+++++|+++|++++..+..|.+|++ .+..+++++|+++|++++..|..|.||||+|+.
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 115 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 3456778999999999999999999999999999999999975 567899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh--------------------------------
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF-------------------------------- 148 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-------------------------------- 148 (208)
.|+.+++++|++.|++ ++.. +..|.||||+|+..+..+++++++.
T Consensus 116 ~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 116 CGYLDIAEYLISQGAH--VGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHhCCCC--CCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999998 7777 4789999999999999999887763
Q ss_pred --cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 149 --FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 149 --~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
.+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 254 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence 235799999999999999999999999999999999999999999999999999999863
No 12
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.4e-35 Score=218.78 Aligned_cols=185 Identities=21% Similarity=0.167 Sum_probs=136.5
Q ss_pred hHHHhhhhchHHHHHHHHhC-------------CHHHHHHHHHcCCCCccc-CCCCCCCcc----chHHHHHHHHHHcCC
Q psy4236 21 DIINILEKTSEGVLKAARVG-------------DIKMLKDLHSQGYSLKKI-PPKDDHPNL----NHFFFQLKDLHSQGY 82 (208)
Q Consensus 21 ~~~~~~~~~~~~l~~A~~~g-------------~~~~~~~Li~~g~~~~~~-~~~~~~~~~----~~~~~~~~~l~~~g~ 82 (208)
|+...+..|.||||.|+..| +.+++++|+++|++++.. +..|.++++ .+..+++++|+++|+
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 45566788999999999987 999999999999999764 788888875 567899999999999
Q ss_pred CCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCC-CCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCC
Q psy4236 83 SLLSIDSVGQTALHYGSRYGHKDVVKYIIACAP-SSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQ 154 (208)
Q Consensus 83 ~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~ 154 (208)
+++.+|..|.||||+|+..|+.+++++|++.++ + ++.. +..|.||||+|+..++.+++++|++. +..|.
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 158 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCC-CTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccc-CCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence 999999999999999999999999999999987 5 6666 47899999999999999999999954 56799
Q ss_pred cHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 155 TALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 155 t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
||||+|+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|++.
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 212 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999863
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.9e-35 Score=227.64 Aligned_cols=187 Identities=21% Similarity=0.204 Sum_probs=161.1
Q ss_pred cchhHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCc-------
Q psy4236 18 HYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLS------- 86 (208)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~------- 86 (208)
..++....+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|++++.
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L 88 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPI 88 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence 34556667888999999999999999999999999999999999998875 4567888888888776654
Q ss_pred ---------------------------------------------CCCCCccHHHHHHhcC--CHHHHHHHHHcCCCCcc
Q psy4236 87 ---------------------------------------------IDSVGQTALHYGSRYG--HKDVVKYIIACAPSSIL 119 (208)
Q Consensus 87 ---------------------------------------------~d~~g~t~l~~a~~~g--~~~~~~~ll~~g~~~~~ 119 (208)
.|..|.||||+|+..| +.+++++|++.|++ +
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~--~ 166 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS--P 166 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--T
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--C
Confidence 6667899999999999 99999999999988 7
Q ss_pred ccCCCCCCccHHHHHHhhCcHHHHHHHHhc------------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCC
Q psy4236 120 NMQDNDKGQTALHKAAMFKRRSICWMFLFF------------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN 187 (208)
Q Consensus 120 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 187 (208)
+.. +..|.||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|+++|++++..|..|.
T Consensus 167 ~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 245 (364)
T 3ljn_A 167 TAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT 245 (364)
T ss_dssp TCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred ccc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 777 47899999999999999999999853 35689999999999999999999999999999999999
Q ss_pred CHHHHHHHcCCHHHHHHHhh
Q psy4236 188 TPRALALLANDTELAAYLEK 207 (208)
Q Consensus 188 t~l~~a~~~~~~~~~~~L~~ 207 (208)
|||++|+.+|+.+++++|++
T Consensus 246 tpL~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 246 VPLYLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp CHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHhChHHHHHHHHH
Confidence 99999999999999999985
No 14
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1e-35 Score=224.46 Aligned_cols=182 Identities=19% Similarity=0.118 Sum_probs=166.5
Q ss_pred HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHH
Q psy4236 22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHY 97 (208)
Q Consensus 22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~ 97 (208)
+...+..|.||||.|+..|+.+++++|+++|++++..+ |.+|++ .+..+++++|+++|++++.+|..|.||||+
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence 34456778999999999999999999999999999884 677764 567899999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccccCCCCCC-ccHHHHHHhhCcHHHHHHHHhcC-----C-CCCcHHHHHHhhCCHHHHH
Q psy4236 98 GSRYGHKDVVKYIIACAPSSILNMQDNDKG-QTALHKAAMFKRRSICWMFLFFS-----S-RGQTALHKAAMFKRRSICC 170 (208)
Q Consensus 98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~l~~~~-----~-~~~t~l~~A~~~~~~~~~~ 170 (208)
|+..|+.+++++|++.|++ ++..+ ..| .||||+|+..|+.+++++|++.+ . .|.||||+|+..|+.++++
T Consensus 102 A~~~g~~~~v~~Ll~~ga~--~~~~~-~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWR--LMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGG--GGGCS-SSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCC--CCccC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 9999999999999999998 77774 667 79999999999999999999763 2 6789999999999999999
Q ss_pred HHHhCCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHhhC
Q psy4236 171 MLVAGGASLTVKDYDSNTP-RALALLANDTELAAYLEKS 208 (208)
Q Consensus 171 ~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~L~~~ 208 (208)
+|+++|++++..+..|+|| ||+|+.+|+.+++++|+++
T Consensus 179 ~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 179 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred HHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999998 9999999999999999863
No 15
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4e-34 Score=204.90 Aligned_cols=179 Identities=23% Similarity=0.275 Sum_probs=164.0
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHHcCC-CCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLHSQGY-SLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
..+.+||+.|+..|+.+.++.|++.+. +++..+..+.+|++ .+..+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 457789999999999999999999876 99999999999975 5668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHc-CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCC-----HH
Q psy4236 102 GHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKR-----RS 167 (208)
Q Consensus 102 g~~~~~~~ll~~-g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~-----~~ 167 (208)
|+.+++++|++. +++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..++ .+
T Consensus 83 ~~~~~~~~Ll~~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 83 GRTEILAYMLKHATPD--LNKH-NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp TCHHHHHHHHHHSCCC--TTCC-CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred CCHHHHHHHHhccCcc--cccc-cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 999999999954 545 6666 47899999999999999999999955 4568999999999998 99
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 168 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
++++|++.|++++..|..|.||+++|+.+|+.+++++|++.
T Consensus 160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 99999999999999999999999999999999999999863
No 16
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=216.54 Aligned_cols=180 Identities=19% Similarity=0.167 Sum_probs=165.6
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHH
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGS 99 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~ 99 (208)
..+..|.||||.|+..|+.+++++|+++|++++..+..|.+|++ .+..+++++|+++|++++.+|..|.||||+|+
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~ 133 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 133 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 34667889999999999999999999999999999999999975 56789999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236 100 RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML 172 (208)
Q Consensus 100 ~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L 172 (208)
..|+.+++++|++.|++ ++.. ..|.||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|
T Consensus 134 ~~~~~~~v~~Ll~~g~~--~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 209 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGAS--VQPE--SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209 (285)
T ss_dssp HHTCHHHHHHHHHTTCC--SSCS--CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HcCHHHHHHHHHHCCCC--CCCC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99999999999999988 5544 4599999999999999999999964 56789999999999999999999
Q ss_pred HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 173 VAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 173 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
++.|++++. +..|.||||+|+.+|+.+++++|++.
T Consensus 210 l~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 210 LESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp HHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 999999995 88999999999999999999999863
No 17
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.5e-33 Score=217.46 Aligned_cols=182 Identities=19% Similarity=0.139 Sum_probs=164.1
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~ 100 (208)
.+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|++++..|..|.||||+|+.
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~ 133 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 3456789999999999999999999999999999999999975 567899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccC-----------------------------------------------------CCCCC
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQ-----------------------------------------------------DNDKG 127 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~-----------------------------------------------------~~~~~ 127 (208)
.|+.+++++|++.|++ ++.. ....|
T Consensus 134 ~~~~~~v~~Ll~~g~~--~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (351)
T 3utm_A 134 KNRVEVCSLLLSHGAD--PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211 (351)
T ss_dssp TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred cCCHHHHHHHHHcCCC--CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence 9999999999999987 3322 12457
Q ss_pred ccHHHHHHhh---CcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q psy4236 128 QTALHKAAMF---KRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197 (208)
Q Consensus 128 ~t~l~~a~~~---~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 197 (208)
.||||+|+.. +..+++++|++. +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.+|
T Consensus 212 ~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291 (351)
T ss_dssp CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 8999999998 668899999854 567999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhC
Q psy4236 198 DTELAAYLEKS 208 (208)
Q Consensus 198 ~~~~~~~L~~~ 208 (208)
+.+++++|+++
T Consensus 292 ~~~~v~~Ll~~ 302 (351)
T 3utm_A 292 HLQTCRLLLSY 302 (351)
T ss_dssp CHHHHHHHHHT
T ss_pred cHHHHHHHHHc
Confidence 99999999863
No 18
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-33 Score=224.54 Aligned_cols=184 Identities=22% Similarity=0.205 Sum_probs=149.2
Q ss_pred hHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHH
Q psy4236 21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALH 96 (208)
Q Consensus 21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~ 96 (208)
++...+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|++++.++..|.||||
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH 85 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence 34455677888999999999999999999999999888888888864 56688899999999999888888999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHH
Q psy4236 97 YGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSIC 169 (208)
Q Consensus 97 ~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~ 169 (208)
+|+..|+.+++++|++.|++ ++.. +..|.||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++
T Consensus 86 ~A~~~g~~~~v~~Ll~~ga~--~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENNAN--PNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCC--CCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999998888 6666 46788899998888888888888854 45677888888888888888
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 170 CMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 170 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
++|+++|++++..+..|.|||++|+.+|+.+++++|++
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 200 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 88888888888888888888888888888888888865
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-34 Score=212.45 Aligned_cols=180 Identities=18% Similarity=0.141 Sum_probs=164.4
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCC----CCCcCCCCCccHHHH
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGY----SLLSIDSVGQTALHY 97 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~----~~~~~d~~g~t~l~~ 97 (208)
+..|.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|++.+. +++..+..|.||||+
T Consensus 43 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~ 122 (241)
T 1k1a_A 43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122 (241)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH
Confidence 345789999999999999999999999999999999999875 567899999999998 889999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHH
Q psy4236 98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICC 170 (208)
Q Consensus 98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~ 170 (208)
|+..|+.+++++|++.|++ ++..+...|.||||+|+..++.+++++|++. +..|.||||+|+..|+.++++
T Consensus 123 A~~~~~~~~~~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 123 AVNTECQETVQLLLERGAD--IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HHHHTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC--cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999998 7766446799999999999999999999965 567999999999999999999
Q ss_pred HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 171 MLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 171 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+|++.|++++.+|..|.||+++|+.+|+.++++.|.+
T Consensus 201 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 201 TLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp HHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred HHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 9999999999999999999999999999999998864
No 20
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-34 Score=223.29 Aligned_cols=183 Identities=19% Similarity=0.185 Sum_probs=167.2
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcC---CCCCcCCCCCccHHH
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQG---YSLLSIDSVGQTALH 96 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g---~~~~~~d~~g~t~l~ 96 (208)
..+..|.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|+++| .+++..|..|.||||
T Consensus 161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~ 240 (373)
T 2fo1_E 161 AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240 (373)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence 34567889999999999999999999999999999999999975 56789999999998 899999999999999
Q ss_pred HHHhcC---CHHHHHHHHHcCCCCccccC-------CCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHH
Q psy4236 97 YGSRYG---HKDVVKYIIACAPSSILNMQ-------DNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALH 158 (208)
Q Consensus 97 ~a~~~g---~~~~~~~ll~~g~~~~~~~~-------~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~ 158 (208)
+|+..+ +.+++++|++.|++ ++.. .+..|.||||+|+..|+.+++++|++. +..|.||||
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~g~~--~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~ 318 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEKGAK--VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHHTCC--SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred HHHHhCCcchHHHHHHHHHCCCC--cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence 999998 89999999999988 5431 135799999999999999999999954 467999999
Q ss_pred HHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 159 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
+|+..|+.+++++|+++|++++..|..|.||+++|+.+|+.+++++|+++
T Consensus 319 ~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 319 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999864
No 21
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.8e-33 Score=203.90 Aligned_cols=177 Identities=24% Similarity=0.223 Sum_probs=163.2
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCC-CCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGY-SLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH 103 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~ 103 (208)
+.++|+.|+..|+.+.+++|++.+. .++..+..+.++++ .+..+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 85 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX 85 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence 5679999999999999999999865 46777888888865 566899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236 104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG 176 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g 176 (208)
.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|
T Consensus 86 ~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 162 (231)
T 3aji_A 86 DEIVKALLVKGAH--VNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162 (231)
T ss_dssp HHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999999998 7777 47899999999999999999999964 466899999999999999999999999
Q ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 177 ASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 177 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
++++..|..|.||+|+|+.+|+.+++++|+++
T Consensus 163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 99999999999999999999999999999863
No 22
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.7e-33 Score=204.20 Aligned_cols=164 Identities=19% Similarity=0.146 Sum_probs=79.0
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcC--CCCcc-cCCCCCCCcc----chHHHHHHHHHHcC--CCCCcCCCCCccHHHHH
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQG--YSLKK-IPPKDDHPNL----NHFFFQLKDLHSQG--YSLLSIDSVGQTALHYG 98 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g--~~~~~-~~~~~~~~~~----~~~~~~~~~l~~~g--~~~~~~d~~g~t~l~~a 98 (208)
.|.||||.|+..|+.+++++|+++| ++++. .+..+.++++ .+..+++++|+++| .+++..+..|.||||+|
T Consensus 35 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A 114 (228)
T 2dzn_A 35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114 (228)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHH
Confidence 3444555555555555555555554 33333 3344444432 22344555555554 44444445555555555
Q ss_pred HhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHH
Q psy4236 99 SRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICC 170 (208)
Q Consensus 99 ~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~ 170 (208)
+..|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.++++
T Consensus 115 ~~~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~ 191 (228)
T 2dzn_A 115 VGKKWFEVSQFLIENGAS--VRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191 (228)
T ss_dssp HHTTCHHHHHHHHHTTCC--SCCC-CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHhHHHHHHHcCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence 555555555555555544 4443 23455555555555555555555432 233445555555555555555
Q ss_pred HHH-hCCCCCcccCCCCCCHHHHHH
Q psy4236 171 MLV-AGGASLTVKDYDSNTPRALAL 194 (208)
Q Consensus 171 ~Ll-~~g~~~~~~~~~g~t~l~~a~ 194 (208)
+|+ +.|++++..|..|.||+++|+
T Consensus 192 ~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 192 LLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp HHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred HHHHhcCCCCCccCCCCCcHHHHHH
Confidence 555 445555555555555555543
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.8e-33 Score=206.35 Aligned_cols=178 Identities=21% Similarity=0.264 Sum_probs=163.6
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcC-CCCCcCCCCCccHHHHHHh
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQG-YSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g-~~~~~~d~~g~t~l~~a~~ 100 (208)
+..+.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|++.| .+++..+..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 120 (237)
T 3b7b_A 41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120 (237)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence 455788999999999999999999999999999999998864 56789999999999 8999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV 173 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll 173 (208)
.|+.+++++|++.|++ ++.. +..|.||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|+
T Consensus 121 ~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 197 (237)
T 3b7b_A 121 YKHVDLVKLLLSKGSD--INIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197 (237)
T ss_dssp TTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCC--CCcc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH
Confidence 9999999999999998 7777 47899999999999999999999965 566899999999999999999999
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236 174 AGGASLTVKDYDSNTPRALALLANDTELAAYLE 206 (208)
Q Consensus 174 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~ 206 (208)
++|++++.+|..|.||+++|+.+++...+..|.
T Consensus 198 ~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 198 SRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp TTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999886655554
No 24
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.4e-34 Score=214.75 Aligned_cols=176 Identities=19% Similarity=0.140 Sum_probs=158.6
Q ss_pred chHHHHHHHHhCCHH----HHHHHHHcCCCCcc----cCCCCCCCcc----c---hHHHHHHHHHHcCCCCCcC------
Q psy4236 29 TSEGVLKAARVGDIK----MLKDLHSQGYSLKK----IPPKDDHPNL----N---HFFFQLKDLHSQGYSLLSI------ 87 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~----~~~~Li~~g~~~~~----~~~~~~~~~~----~---~~~~~~~~l~~~g~~~~~~------ 87 (208)
|.||||.|+..|+.+ ++++|+++|++++. .+..|.+|++ . +..+++++|++.|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 679999999999997 66777789999998 8999999975 3 6778999999999887643
Q ss_pred -----CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCC-------------CccHHHHHHhhCcHHHHHHHHh-
Q psy4236 88 -----DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDK-------------GQTALHKAAMFKRRSICWMFLF- 148 (208)
Q Consensus 88 -----d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~l~~- 148 (208)
|..|.||||+|+..|+.+++++|++.|++ ++..+ .. |.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~-~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD--VHLRA-CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCC-CSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccc-ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 36799999999999999999999999998 77764 33 9999999999999999999998
Q ss_pred --c-------CCCCCcHHHHHHh--hCCHH-------HHHHHHhCCCCC-------cccCCCCCCHHHHHHHcCCHHHHH
Q psy4236 149 --F-------SSRGQTALHKAAM--FKRRS-------ICCMLVAGGASL-------TVKDYDSNTPRALALLANDTELAA 203 (208)
Q Consensus 149 --~-------~~~~~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~~~~ 203 (208)
. +..|.||||+|+. .++.+ ++++|++.|+++ +.+|..|.||||+|+.+|+.++++
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence 4 5679999999999 78888 999999999999 899999999999999999999999
Q ss_pred HHhh
Q psy4236 204 YLEK 207 (208)
Q Consensus 204 ~L~~ 207 (208)
+|++
T Consensus 239 ~Ll~ 242 (256)
T 2etb_A 239 HILQ 242 (256)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
No 25
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-32 Score=206.70 Aligned_cols=177 Identities=22% Similarity=0.215 Sum_probs=101.1
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH 103 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~ 103 (208)
.+.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|++++..|..|.||||+|+..|+
T Consensus 38 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 117 (285)
T 1wdy_A 38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC
Confidence 3556777777777777777777777777776666666653 344666777777777766666666677777766666
Q ss_pred HHHHHHHHHcCCCCccccCC---------CCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCC-
Q psy4236 104 KDVVKYIIACAPSSILNMQD---------NDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKR- 165 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~---------~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~- 165 (208)
.+++++|++.|++ ++... +..|.||||+|+..++.+++++|++. +..|.||||+|+..++
T Consensus 118 ~~~~~~Ll~~g~~--~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 195 (285)
T 1wdy_A 118 VKALKFLYKRGAN--VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195 (285)
T ss_dssp HHHHHHHHHTTCC--TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred HHHHHHHHHhCCC--cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence 6666666666665 33221 13456666666666666666666532 2334444444444444
Q ss_pred ---HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236 166 ---RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLE 206 (208)
Q Consensus 166 ---~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~ 206 (208)
.+++++|++.|++++.++..|.||||+|+.+|+.+++++|+
T Consensus 196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 44444444444444444444444444444444444444443
No 26
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=209.30 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=160.4
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~ 100 (208)
.+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|++++. +..|.||||+|+.
T Consensus 32 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~ 110 (261)
T 2xai_A 32 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAAR 110 (261)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHH
Confidence 3456889999999999999999999999999999999999975 4668999999999999985 4569999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF------SSRGQTALHKAAMFKRRSICCMLVA 174 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------~~~~~t~l~~A~~~~~~~~~~~Ll~ 174 (208)
.|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++
T Consensus 111 ~~~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~ 187 (261)
T 2xai_A 111 RGHVECVNSLIAYGGN--IDHK-ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMD 187 (261)
T ss_dssp TTCHHHHHHHHHTTCC--TTCC-BTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTCCBTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCC--CCcC-CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHcCCHHHHHHHHH
Confidence 9999999999999998 7777 47899999999999999999999955 5678999999999999999999999
Q ss_pred CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 175 GGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 175 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
.|+|++.+|..|.||+++|+.+++ ++++|++
T Consensus 188 ~gad~~~~d~~g~tpl~~A~~~~~--~~~~ll~ 218 (261)
T 2xai_A 188 FGADTQAKNAEGKRPVELVPPESP--LAQLFLE 218 (261)
T ss_dssp TTCCTTCCCTTSCCGGGGSCTTCT--HHHHHHH
T ss_pred cCCCCCCcCCCCCChhhhcccccc--HHHHHHh
Confidence 999999999999999999996654 6777764
No 27
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.8e-35 Score=214.87 Aligned_cols=184 Identities=20% Similarity=0.179 Sum_probs=162.1
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCC----CCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGY----SLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL 95 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l 95 (208)
..+..|.||||.|+..|+.+++++|++.+. +++..+..+.+|++ .+..+++++|+++|++++.+|..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356788999999999999999999998865 78999999999975 5668999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCc----cccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CC-CCCcHHHHHHhh
Q psy4236 96 HYGSRYGHKDVVKYIIACAPSSI----LNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SS-RGQTALHKAAMF 163 (208)
Q Consensus 96 ~~a~~~g~~~~~~~ll~~g~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~-~~~t~l~~A~~~ 163 (208)
|+|+..|+.+++++|++.++++. ++.. +..|.||||+|+..++.+++++|++. +. .|.||||+|+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 161 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKAT-NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC-CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 99999999999999999987521 2334 46799999999999999999999955 33 799999999999
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 164 KRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 164 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
|+.+++++|+++|++++..|..|.||+++|+.+|+.+++++|+++
T Consensus 162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 206 (236)
T 1ikn_D 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206 (236)
T ss_dssp TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence 999999999999999999999999999999999999999999863
No 28
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.3e-32 Score=211.92 Aligned_cols=181 Identities=21% Similarity=0.175 Sum_probs=147.2
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCC-CCCCcc----chHHHHHHHHHHcCCCC----------------
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPK-DDHPNL----NHFFFQLKDLHSQGYSL---------------- 84 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~g~~~---------------- 84 (208)
..++.|+|+.||+.|+.++|++|+++|+++|..+.. |.+|++ .++.+++++|+++|+++
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 345678888888888888888888888888887754 677764 55678888888877754
Q ss_pred -----------------CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCC---------CCCCccHHHHHHhhC
Q psy4236 85 -----------------LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD---------NDKGQTALHKAAMFK 138 (208)
Q Consensus 85 -----------------~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~---------~~~~~t~l~~a~~~~ 138 (208)
+..|..|.||+|+|+..|+.++++++++.|++ ++... +..|.||||+|+..|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~--~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN--VNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC--cchhhccccccccccCCCCcHHHHHHHCC
Confidence 44566788999999999999999999998887 33221 235789999999999
Q ss_pred cHHHHHHHHhc---------------------------------------------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236 139 RRSICWMFLFF---------------------------------------------SSRGQTALHKAAMFKRRSICCMLV 173 (208)
Q Consensus 139 ~~~~~~~l~~~---------------------------------------------~~~~~t~l~~A~~~~~~~~~~~Ll 173 (208)
+.+++++|+++ +..|.||||+|+..|+.++++.|+
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 99998888721 245789999999999999999999
Q ss_pred h-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 174 A-GGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 174 ~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
. .|++++.+|..|+||||+|+.+|+.+++++|+++
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 8 5899999999999999999999999999999863
No 29
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3e-32 Score=204.43 Aligned_cols=178 Identities=19% Similarity=0.151 Sum_probs=164.5
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHHcCCCCccc-CCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKI-PPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~-~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
.+|.++|+.|++.|+.+++++|+++|++++.. +..+.++++ .+..+++++|+++|++++.+|..|.||||+|+..
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 46789999999999999999999999999988 666777764 5678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-----------------CCCCCcHHHHHHhhC
Q psy4236 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-----------------SSRGQTALHKAAMFK 164 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-----------------~~~~~t~l~~A~~~~ 164 (208)
|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||.|+..|
T Consensus 83 ~~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 83 GSVKLLKLFLSKGAD--VNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp TCHHHHHHHHHTTCC--TTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCC--CCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 999999999999998 7777 47899999999999999999999965 456889999999999
Q ss_pred CHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCC----HHHHHHHhh
Q psy4236 165 RRSICCMLVAG-GASLTVKDYDSNTPRALALLAND----TELAAYLEK 207 (208)
Q Consensus 165 ~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~----~~~~~~L~~ 207 (208)
+.+++++|++. |++++..+..|.||+|+|+..++ .+++++|++
T Consensus 160 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~ 207 (285)
T 1wdy_A 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207 (285)
T ss_dssp CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH
Confidence 99999999996 99999999999999999999999 899999875
No 30
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=209.87 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=161.0
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|++.|++++..+ .|.||||+|+..
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~ 167 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR 167 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHc
Confidence 345789999999999999999999999999999999999975 466899999999999998654 599999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc------CCCCCcHHHHHHhhCCHHHHHHHHhC
Q psy4236 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF------SSRGQTALHKAAMFKRRSICCMLVAG 175 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------~~~~~t~l~~A~~~~~~~~~~~Ll~~ 175 (208)
|+.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.
T Consensus 168 g~~~~v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 168 GHVECVNSLIAYGGN--IDHK-ISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp TCHHHHHHHHHTTCC--TTCC-BTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCC--CCCc-CCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 999999999999998 7777 47899999999999999999999955 46789999999999999999999999
Q ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 176 GASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 176 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
|++++.+|..|.||+++|+ ++.+++++|++
T Consensus 245 gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~ 274 (285)
T 3d9h_A 245 GADTQAKNAEGKRPVELVP--PESPLAQLFLE 274 (285)
T ss_dssp TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHhc--CccHHHHHHHH
Confidence 9999999999999999999 45688988875
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=214.36 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=136.1
Q ss_pred hhhhchHHHHHHHHhCCH-HHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHH
Q psy4236 25 ILEKTSEGVLKAARVGDI-KMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGS 99 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~-~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~ 99 (208)
.+..+.+||+.|+..++. ++++.|+++|+++|..+..|.+|++ .+..+++++|++.|++++..+..|.||+++|+
T Consensus 48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~ 127 (269)
T 4b93_B 48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127 (269)
T ss_dssp ---------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccc
Confidence 345577899999988876 4889999999999999999999975 46688999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236 100 RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML 172 (208)
Q Consensus 100 ~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L 172 (208)
..++.+++++|++.|++ ++.+ +..|+||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|
T Consensus 128 ~~~~~~~~~~Ll~~g~~--~n~~-d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L 204 (269)
T 4b93_B 128 QQGHFQVVKCLLDSNAK--PNKK-DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204 (269)
T ss_dssp HHTCHHHHHHHHHTTCC--SCCC-CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred ccChHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHH
Confidence 99999999999999998 7777 47899999999999999999999965 56799999999999999999999
Q ss_pred HhCCCCCcccCCCCCCHHHHHHHcCC
Q psy4236 173 VAGGASLTVKDYDSNTPRALALLAND 198 (208)
Q Consensus 173 l~~g~~~~~~~~~g~t~l~~a~~~~~ 198 (208)
+++|+|++.+|..|+||||+|+.+++
T Consensus 205 l~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 205 LLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 99999999999999999999988774
No 32
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-32 Score=218.61 Aligned_cols=175 Identities=21% Similarity=0.199 Sum_probs=89.0
Q ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236 30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD 105 (208)
Q Consensus 30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~ 105 (208)
.|||+.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|++.|.+++..+..|.||||+|+..|+.+
T Consensus 180 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 259 (437)
T 1n11_A 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 34444444444444444444444444444444444432 23344555555555555555555555555555555555
Q ss_pred HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236 106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS 178 (208)
Q Consensus 106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~ 178 (208)
++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+++|++
T Consensus 260 ~v~~Ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 336 (437)
T 1n11_A 260 MVALLLSKQAN--GNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336 (437)
T ss_dssp HHHHHHTTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC
Confidence 55555555544 3333 24455555555555555555555432 33455555555555555555555555555
Q ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 179 LTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 179 ~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
++.+|..|.||||+|+.+|+.+++++|++
T Consensus 337 ~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 55555555555555555555555555543
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6.4e-33 Score=208.13 Aligned_cols=172 Identities=19% Similarity=0.129 Sum_probs=142.7
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCC------------------
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYS------------------ 83 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~------------------ 83 (208)
+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|.+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 121 (282)
T 1oy3_D 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121 (282)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence 355789999999999999999999999999999999999964 5678999999998765
Q ss_pred -----------------------------CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHH
Q psy4236 84 -----------------------------LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134 (208)
Q Consensus 84 -----------------------------~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a 134 (208)
++.++..|.||||+|+..|+.+++++|++.|++ ++..+...|+||||+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~A 199 (282)
T 1oy3_D 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD--LNKPEPTCGRTPLHLA 199 (282)
T ss_dssp ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHH
T ss_pred chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcCHHHHH
Confidence 677888999999999999999999999999998 7777444599999999
Q ss_pred HhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q psy4236 135 AMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199 (208)
Q Consensus 135 ~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 199 (208)
+..++.+++++|++. +..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|....+.
T Consensus 200 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred HHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence 999999999999965 56799999999999999999999999999999999999999999876543
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=201.99 Aligned_cols=179 Identities=21% Similarity=0.284 Sum_probs=150.5
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCC-CCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPK-DDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~ 100 (208)
+..+.||||.|+..|+.+++++|+++|++++..... +.+++. .+..+++++|++.|++++.++..|.||||+|+.
T Consensus 39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 118 (240)
T 3eu9_A 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118 (240)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 345667888888888888888888888888766544 566653 455788888888888888888888889999888
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc-HHHHHHHHhc-------C-CCCCcHHHHHHhhCCHHHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR-RSICWMFLFF-------S-SRGQTALHKAAMFKRRSICCM 171 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~l~~~-------~-~~~~t~l~~A~~~~~~~~~~~ 171 (208)
.|+.+++++|++.|++ ++.. +..|.||||+|+..++ .+++++|++. + ..|.||||+|+..|+.+++++
T Consensus 119 ~~~~~~~~~Ll~~~~~--~~~~-~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 195 (240)
T 3eu9_A 119 FGHTSIVAYLIAKGQD--VDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195 (240)
T ss_dssp TTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHhcCCC--cccc-CCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH
Confidence 8888888988888887 6666 4678889988886665 6777877744 2 368899999999999999999
Q ss_pred HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 172 LVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 172 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
|++.|++++..+..|.||+++|+.+|+.+++++|++
T Consensus 196 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 196 LLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999999999999999986
No 35
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.7e-33 Score=202.51 Aligned_cols=177 Identities=21% Similarity=0.139 Sum_probs=159.8
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCCCCcc-cCCCCCCCcc----chHHHHHHHHHHcC--CCCCc-CCCCCccHHHHHHh
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGYSLKK-IPPKDDHPNL----NHFFFQLKDLHSQG--YSLLS-IDSVGQTALHYGSR 100 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~-~~~~~~~~~~----~~~~~~~~~l~~~g--~~~~~-~d~~g~t~l~~a~~ 100 (208)
|.||||.|+..|+.+++++|+++|.++.. .+..+.++++ .+..+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 56899999999999999999999988765 7888888865 56789999999999 55555 78899999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV 173 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll 173 (208)
.|+.+++++|++.|+...++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999843337777 47899999999999999999999965 567999999999999999999999
Q ss_pred hCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236 174 AGG-ASLTVKDYDSNTPRALALLANDTELAAYLE 206 (208)
Q Consensus 174 ~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~ 206 (208)
+.| ++++..|..|.||||+|+.+|+.+++++|+
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999 999999999999999999999999999998
No 36
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=5.1e-33 Score=206.78 Aligned_cols=180 Identities=18% Similarity=0.113 Sum_probs=155.9
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHH----cCCCCcccC----CCCCCCcc-------chHHHHHHHHHHcCCC--------
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLHS----QGYSLKKIP----PKDDHPNL-------NHFFFQLKDLHSQGYS-------- 83 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li~----~g~~~~~~~----~~~~~~~~-------~~~~~~~~~l~~~g~~-------- 83 (208)
..+.++|+.|++.|+.+.++.|++ +|++++..+ ..|.++++ .+..+++++|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 347789999999999996555554 999999776 66888865 2668999999998744
Q ss_pred ---CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-------------CCCccHHHHHHhhCcHHHHHHHH
Q psy4236 84 ---LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDN-------------DKGQTALHKAAMFKRRSICWMFL 147 (208)
Q Consensus 84 ---~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~-------------~~~~t~l~~a~~~~~~~~~~~l~ 147 (208)
++..|..|+||||+|+..|+.+++++|++.|++ ++..+. ..|.||||+|+..|+.+++++|+
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD--VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC--cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 455566899999999999999999999999998 766631 46999999999999999999999
Q ss_pred h---c-------CCCCCcHHHHHHhhCC---------HHHHHHHHhCCCCC-------cccCCCCCCHHHHHHHcCCHHH
Q psy4236 148 F---F-------SSRGQTALHKAAMFKR---------RSICCMLVAGGASL-------TVKDYDSNTPRALALLANDTEL 201 (208)
Q Consensus 148 ~---~-------~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~~ 201 (208)
+ . +..|+||||+|+..++ .+++++|++.|+++ +..|..|.||||+|+.+|+.++
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 240 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence 8 4 5679999999999888 79999999999999 6799999999999999999999
Q ss_pred HHHHhhC
Q psy4236 202 AAYLEKS 208 (208)
Q Consensus 202 ~~~L~~~ 208 (208)
+++|+++
T Consensus 241 v~~Ll~~ 247 (260)
T 3jxi_A 241 FQHIIRR 247 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999863
No 37
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=3.5e-31 Score=184.90 Aligned_cols=150 Identities=28% Similarity=0.378 Sum_probs=134.0
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV 106 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~ 106 (208)
..+.++|+.|++.|+.+++++|+++|++ ++.+|..|.||||+|+..|+.++
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-----------------------------~~~~~~~g~t~L~~A~~~~~~~~ 62 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGAD-----------------------------VNAEDASGWTPLHLAAFNGHLEI 62 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCC-----------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence 4456799999999999999997666554 45677889999999999999999
Q ss_pred HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236 107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL 179 (208)
Q Consensus 107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 179 (208)
+++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+++|+++
T Consensus 63 v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 139 (169)
T 2y1l_E 63 VEVLLKNGAD--VNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139 (169)
T ss_dssp HHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999988 7777 47799999999999999999999864 567899999999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 180 TVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
+..|..|.||+++|+.+|+.+++++|++.
T Consensus 140 ~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 140 NAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred CCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999999999999999999863
No 38
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=5e-33 Score=208.31 Aligned_cols=182 Identities=21% Similarity=0.163 Sum_probs=156.5
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHH----cCCCCc----ccCCCCCCCccc-------hHHHHHHHHHHcCCCC----
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHS----QGYSLK----KIPPKDDHPNLN-------HFFFQLKDLHSQGYSL---- 84 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~----~g~~~~----~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~---- 84 (208)
..+..+.|+||.|+..|+.++++.|++ .+++++ ..+..+.++++. +..+++++|+++|+++
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 456778999999999999999998887 567776 346788888642 6689999999998653
Q ss_pred ---Cc----CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-------------CCCccHHHHHHhhCcHHHHH
Q psy4236 85 ---LS----IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDN-------------DKGQTALHKAAMFKRRSICW 144 (208)
Q Consensus 85 ---~~----~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~-------------~~~~t~l~~a~~~~~~~~~~ 144 (208)
+. .|..|.||||+|+..|+.+++++|++.|++ ++..+. ..|.||||+|+..|+.++++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD--VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC--cCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 22 567899999999999999999999999998 776642 16999999999999999999
Q ss_pred HHHh---c-------CCCCCcHHHHHHhhCC---------HHHHHHHHhCCCCCc-------ccCCCCCCHHHHHHHcCC
Q psy4236 145 MFLF---F-------SSRGQTALHKAAMFKR---------RSICCMLVAGGASLT-------VKDYDSNTPRALALLAND 198 (208)
Q Consensus 145 ~l~~---~-------~~~~~t~l~~A~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~a~~~~~ 198 (208)
+|++ . +..|+||||+|+..|+ .+++++|++.|++++ ..|..|.||||+|+.+|+
T Consensus 166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 9998 4 5679999999999998 799999999999997 489999999999999999
Q ss_pred HHHHHHHhh
Q psy4236 199 TELAAYLEK 207 (208)
Q Consensus 199 ~~~~~~L~~ 207 (208)
.+++++|++
T Consensus 246 ~~iv~~Ll~ 254 (273)
T 2pnn_A 246 IGVLAYILQ 254 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999986
No 39
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.2e-33 Score=215.65 Aligned_cols=179 Identities=20% Similarity=0.211 Sum_probs=162.9
Q ss_pred hhchHHHHHHHHhCCHHHHHHHH--------HcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccH
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLH--------SQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTA 94 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li--------~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~ 94 (208)
..|.||||+|+..|+.+++++|+ ++|+++|..+..|.+|++ .+..+++++|+++|++++..|..|.||
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 202 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence 56889999999999998888776 889999999999999975 566899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcC---CCCccccCCCCCCccHHHHHHhhC---cHHHHHHHHhc---------------CCCC
Q psy4236 95 LHYGSRYGHKDVVKYIIACA---PSSILNMQDNDKGQTALHKAAMFK---RRSICWMFLFF---------------SSRG 153 (208)
Q Consensus 95 l~~a~~~g~~~~~~~ll~~g---~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~l~~~---------------~~~~ 153 (208)
||+|+..|+.+++++|++.+ .+ ++.. +..|.||||+|+..+ +.+++++|++. +..|
T Consensus 203 L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g 279 (373)
T 2fo1_E 203 LHQAAANRDFGMMVYMLNSTKLKGD--IEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 279 (373)
T ss_dssp HHHHHHTTCHHHHHHHTTSHHHHHT--TSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred HHHHHHCCCHHHHHHHHhcCccccC--hhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence 99999999999999999987 55 6666 478999999999988 89999999954 2368
Q ss_pred CcHHHHHHhhCCHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 154 QTALHKAAMFKRRSICCMLVAG-GASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 154 ~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
.||||+|+..|+.+++++|++. |++++..|..|.||||+|+.+|+.+++++|+++
T Consensus 280 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 335 (373)
T 2fo1_E 280 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335 (373)
T ss_dssp CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999986 599999999999999999999999999999863
No 40
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.9e-31 Score=204.65 Aligned_cols=185 Identities=24% Similarity=0.293 Sum_probs=167.4
Q ss_pred hHHHhhhhchHHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHH
Q psy4236 21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQ-GYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTAL 95 (208)
Q Consensus 21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~-g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l 95 (208)
+.......+.++|+.|++.|+.+.++.|+.. +++++..+..|.+|++ .+..+++++|+++|++++.+|..|.|||
T Consensus 16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 95 (351)
T 3utm_A 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred eeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 3344456678899999999999999999986 8999999999999975 5678999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC-------------------------
Q psy4236 96 HYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS------------------------- 150 (208)
Q Consensus 96 ~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~------------------------- 150 (208)
|+|+..|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++.+
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGAC--VNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence 999999999999999999998 7777 478999999999999999999998542
Q ss_pred ------------------------------------CCCCcHHHHHHhh---CCHHHHHHHHhCCCCCcccCCCCCCHHH
Q psy4236 151 ------------------------------------SRGQTALHKAAMF---KRRSICCMLVAGGASLTVKDYDSNTPRA 191 (208)
Q Consensus 151 ------------------------------------~~~~t~l~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~l~ 191 (208)
..|.||||+|+.. +..+++++|++.|++++..+..|.||||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 252 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH 252 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHH
Confidence 3467999999998 5589999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHhhC
Q psy4236 192 LALLANDTELAAYLEKS 208 (208)
Q Consensus 192 ~a~~~~~~~~~~~L~~~ 208 (208)
+|+.+|+.+++++|+++
T Consensus 253 ~A~~~g~~~~v~~Ll~~ 269 (351)
T 3utm_A 253 VAAERAHNDVMEVLHKH 269 (351)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHC
Confidence 99999999999999863
No 41
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=2.3e-31 Score=185.33 Aligned_cols=148 Identities=21% Similarity=0.188 Sum_probs=134.3
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV 107 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~ 107 (208)
.+.||||.|+..|+.+++++|++.|. +++.+|..|.||||+|+..|+.+++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~-----------------------------~~~~~~~~g~t~L~~A~~~~~~~~v 52 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQEN-----------------------------VINHTDEEGFTPLMWAAAHGQIAVV 52 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSS-----------------------------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCC-----------------------------CcCCCCCCCCCHHHHHHHCCCHHHH
Confidence 46789999999999999999766554 4556788999999999999999999
Q ss_pred HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236 108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLT 180 (208)
Q Consensus 108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 180 (208)
++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|++++
T Consensus 53 ~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 129 (167)
T 3v31_A 53 EFLLQNGAD--PQLL-GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129 (167)
T ss_dssp HHHHHTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCC--CCCc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 999999988 7776 47899999999999999999999854 5678999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 181 VKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 181 ~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
..+..|.||+++|+.+|+.+++++|++
T Consensus 130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 130 IETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999999975
No 42
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.2e-31 Score=190.88 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=136.6
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK 104 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~ 104 (208)
.+..|.||||.|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------------------------~~~~~~~g~t~L~~A~~~~~~ 81 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDK-----------------------------LEDKDIEGSTALIWAVKNNRL 81 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----------------------------TTCCCTTSCCHHHHHHHTTCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----------------------------cccccccCccHHHHHHHcCCH
Confidence 456688999999999999999997666554 456778899999999999999
Q ss_pred HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236 105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA 177 (208)
Q Consensus 105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~ 177 (208)
+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|+
T Consensus 82 ~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 158 (192)
T 2rfm_A 82 GIAEKLLSKGSN--VNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158 (192)
T ss_dssp HHHHHHHHHTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCC--CCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 999999999988 7777 47899999999999999999999854 5679999999999999999999999999
Q ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 178 SLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 178 ~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+++..|..|.||+++|+.+|+.+++++|++
T Consensus 159 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 159 DISARDLTGLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp CTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence 999999999999999999999999999985
No 43
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.98 E-value=9e-31 Score=179.88 Aligned_cols=144 Identities=24% Similarity=0.309 Sum_probs=131.0
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHH
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVK 108 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~ 108 (208)
..++|+.|+..|+.+++++|+++|+++ + .+..|.||||+|+..|+.++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------------~-~~~~g~t~L~~A~~~~~~~~v~ 51 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-----------------------------T-TDWLGTSPLHLAAQYGHFSTTE 51 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-----------------------------C-CCTTCCCHHHHHHHHTCHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-----------------------------C-cCCCCCCHHHHHHHcCCHHHHH
Confidence 357999999999999999988777654 2 4677999999999999999999
Q ss_pred HHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236 109 YIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181 (208)
Q Consensus 109 ~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~ 181 (208)
+|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|++++.
T Consensus 52 ~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 52 VLLRAGVS--RDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp HHHTTTCC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCC--CCCC-CCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 99999988 7777 47799999999999999999999954 56789999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236 182 KDYDSNTPRALALLANDTELAAYL 205 (208)
Q Consensus 182 ~~~~g~t~l~~a~~~~~~~~~~~L 205 (208)
.|..|.||+++|+.+|+.+++++|
T Consensus 129 ~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 129 QSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999999987
No 44
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=8.6e-31 Score=181.44 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=115.4
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV 107 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~ 107 (208)
...+||+.|+..|+.+++++|+++|++++ .+|..|.||||+|+. |+.+++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-----------------------------~~~~~g~t~L~~A~~-~~~~~v 53 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVN-----------------------------AQNGFGRTALQVMKL-GNPEIA 53 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-----------------------------CCCTTSCCHHHHCCS-SCHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-----------------------------ccCccCccHHHHHHc-CcHHHH
Confidence 45689999999999999999777666554 456667777777777 777777
Q ss_pred HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC-C
Q psy4236 108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS-L 179 (208)
Q Consensus 108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~-~ 179 (208)
++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|++ +
T Consensus 54 ~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 130 (162)
T 1ihb_A 54 RRLLLRGAN--PDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130 (162)
T ss_dssp HHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT
T ss_pred HHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC
Confidence 777777766 5555 35677777777777777777777743 45677888888888888888888888887 5
Q ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 180 TVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
+..+..|.||+++|+.+|+.+++++|+++
T Consensus 131 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 131 GHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 88888899999999999999999988764
No 45
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.8e-30 Score=181.66 Aligned_cols=148 Identities=22% Similarity=0.246 Sum_probs=132.5
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHH
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVK 108 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~ 108 (208)
+.+|||.|+..|+.+.+++|++.|.+ .++.+|..|.||||+|+..|+.++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~----------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~ 53 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDN----------------------------LVNKPDERGFTPLIWASAFGEIETVR 53 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSG----------------------------GGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcc----------------------------cccCCCCCCCCHHHHHHHcCCHHHHH
Confidence 35699999999999999998776543 14567889999999999999999999
Q ss_pred HHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236 109 YIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181 (208)
Q Consensus 109 ~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~ 181 (208)
+|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|++++.
T Consensus 54 ~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 54 FLLEWGAD--PHIL-AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130 (172)
T ss_dssp HHHHHTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCCC--chhh-cccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 99999988 7777 47899999999999999999999955 56789999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 182 KDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 182 ~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
.|..|.||+++|+.+|+.+++++|++
T Consensus 131 ~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 131 EADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 99999999999999999999999975
No 46
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=3.7e-31 Score=192.32 Aligned_cols=166 Identities=22% Similarity=0.187 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHcCCCCccc-CCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcC
Q psy4236 40 GDIKMLKDLHSQGYSLKKI-PPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA 114 (208)
Q Consensus 40 g~~~~~~~Li~~g~~~~~~-~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g 114 (208)
|+.+++++|+++|++++.. +..+.++++ .+..+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 6788899999999999876 678888864 56789999999999999999999999999999999999999999998
Q ss_pred C-CCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCC
Q psy4236 115 P-SSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186 (208)
Q Consensus 115 ~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 186 (208)
+ + ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|++++..|..|
T Consensus 82 ~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 158 (223)
T 2f8y_A 82 ATD--LDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158 (223)
T ss_dssp TSC--TTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCC--cccC-CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 7 4 5555 47899999999999999999999964 5669999999999999999999999999999999999
Q ss_pred CCHHHHHHHcCCHHHHHHHhhC
Q psy4236 187 NTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 187 ~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
.||+|+|+.+|+.+++++|++.
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT
T ss_pred cCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999863
No 47
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=3.1e-31 Score=200.77 Aligned_cols=181 Identities=18% Similarity=0.143 Sum_probs=154.9
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~ 100 (208)
.+..|.||||.|+..|+.+++++|+++|++++..+..|.+|++ .+..+++++|+++|++++..+..|.||||+|+.
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 148 (299)
T 1s70_B 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148 (299)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHh
Confidence 3456789999999999999999999999999999999999975 566899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHc-CCCCc-----------------------cccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------
Q psy4236 101 YGHKDVVKYIIAC-APSSI-----------------------LNMQDNDKGQTALHKAAMFKRRSICWMFLFF------- 149 (208)
Q Consensus 101 ~g~~~~~~~ll~~-g~~~~-----------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~------- 149 (208)
.++.+++++++.. +.+.. .....+..|.||||+|+..|+.+++++|++.
T Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~ 228 (299)
T 1s70_B 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228 (299)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC
T ss_pred cchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCc
Confidence 9999999887753 32200 1111135799999999999999999999964
Q ss_pred CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205 (208)
Q Consensus 150 ~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 205 (208)
+..|.||||+|+..|+.+++++|++.|++++.+|..|.||+++|.......+.+++
T Consensus 229 d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~ 284 (299)
T 1s70_B 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284 (299)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHH
T ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999765444444433
No 48
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=1.4e-29 Score=174.35 Aligned_cols=148 Identities=21% Similarity=0.266 Sum_probs=125.5
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV 107 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~ 107 (208)
++.++|+.|+..|+.+++++|+++ . +.+++..|..|.||||+ +..|+.+++
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~-~---------------------------~~~~~~~~~~g~t~L~~-~~~~~~~~v 51 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHR-E---------------------------LVHPDALNRFGKTALQV-MMFGSTAIA 51 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHT-T---------------------------CCCTTCCCTTSCCHHHH-SCTTCHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHh-h---------------------------CcCccccCCCCCcHHHH-HHcCCHHHH
Confidence 356899999999999999998775 2 22455677778888888 788888888
Q ss_pred HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236 108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLT 180 (208)
Q Consensus 108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 180 (208)
++|++.|++ ++.. +..|.||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|++. ++++
T Consensus 52 ~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~ 127 (156)
T 1bd8_A 52 LELLKQGAS--PNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH 127 (156)
T ss_dssp HHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT
T ss_pred HHHHHCCCC--CCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC
Confidence 888888877 6666 36788888888888888888888754 46688999999999999999999999 9999
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 181 VKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 181 ~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
..|..|.||+++|+.+|+.+++++|+++
T Consensus 128 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 128 RRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999999999999874
No 49
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=198.12 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=156.0
Q ss_pred hHHHHHHHHhCCHHHHHHHHHcCCC--CcccCCCCCCCcc----chHHHHHHHHHHcCC-CCCcCCCCCccHHHHHH---
Q psy4236 30 SEGVLKAARVGDIKMLKDLHSQGYS--LKKIPPKDDHPNL----NHFFFQLKDLHSQGY-SLLSIDSVGQTALHYGS--- 99 (208)
Q Consensus 30 ~~~l~~A~~~g~~~~~~~Li~~g~~--~~~~~~~~~~~~~----~~~~~~~~~l~~~g~-~~~~~d~~g~t~l~~a~--- 99 (208)
.+++|.|+..|+.+.++.+++.+.+ +|..+..|.+|++ .+..+++++|++.|. +++..+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 3467888889999999999888766 8888899998875 566889999999998 99999999999999999
Q ss_pred --hcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHH
Q psy4236 100 --RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICC 170 (208)
Q Consensus 100 --~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~ 170 (208)
..+..+++++|++.|.. .... +..|+||||+|+..|+.+++++|++. +..|.||||+|+..|+.++++
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~--~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNI--NAKA-SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCT--TCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred hhhhhhHHHHHHHHHcCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 66889999999999976 5555 46799999999999999999999854 577999999999999999999
Q ss_pred HHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 171 MLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 171 ~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+|++ .|++++..|..|.||+++|+.+|+.+++++|++
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 9999 899999999999999999999999999999986
No 50
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=7.8e-30 Score=196.36 Aligned_cols=177 Identities=22% Similarity=0.180 Sum_probs=153.8
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCC----------CCCCCcc----chHHHHHHHHHH-cCCCCCcCC
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPP----------KDDHPNL----NHFFFQLKDLHS-QGYSLLSID 88 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~----------~~~~~~~----~~~~~~~~~l~~-~g~~~~~~d 88 (208)
..+..|.||++.|+..|+.+++++|+++|++++.... .|.+|++ .+..+++++|++ .|++++.+|
T Consensus 120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d 199 (337)
T 4g8k_A 120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199 (337)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence 3456688999999999999999999999999987543 3456653 566899999996 699999999
Q ss_pred CCCccHHHHHHhcCC----HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcH
Q psy4236 89 SVGQTALHYGSRYGH----KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTA 156 (208)
Q Consensus 89 ~~g~t~l~~a~~~g~----~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~ 156 (208)
..|.|+++.++..+. ..++++|++.|++ ++.+ +..|+||||+|+..++.++++.|+.. +..|.||
T Consensus 200 ~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad--~n~~-d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~Tp 276 (337)
T 4g8k_A 200 NMGRNALIHALLSSDDSDVEAITHLLLDHGAD--VNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 276 (337)
T ss_dssp TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC--TTCC-CGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBH
T ss_pred CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC--CCCc-CCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCH
Confidence 999999998876554 4578999999999 8877 47899999999999999999999843 5789999
Q ss_pred HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
||+|+..|+.+++++|+++|++++.. +||++|+.+|+.+++++|+++
T Consensus 277 L~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 277 LLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999999999999998764 599999999999999999874
No 51
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=6.3e-30 Score=177.70 Aligned_cols=151 Identities=26% Similarity=0.405 Sum_probs=133.8
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD 105 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~ 105 (208)
+.++.++|+.|++.|+.+++++|++.+ +.+++..+..|.||||+|+..|+.+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~ 56 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ----------------------------SVNCRDIEGRQSTPLHFAAGYNRVS 56 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT----------------------------TTTCCCTTTTCCCHHHHHHHTTCHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC----------------------------CCCccccccCCCCHHHHHHHcChHH
Confidence 456788999999999999999987642 2344567778999999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236 106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS 178 (208)
Q Consensus 106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~ 178 (208)
++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|++.|++
T Consensus 57 ~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 57 VVEYLLQHGAD--VHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp HHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC--CCcc-CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999988 7777 47899999999999999999999955 56789999999999999999999999999
Q ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 179 LTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 179 ~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
++.+|..|.||+++|.. ++.+++++|+++
T Consensus 134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred CcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence 99999999999999877 899999999864
No 52
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=4.3e-31 Score=202.78 Aligned_cols=164 Identities=17% Similarity=0.108 Sum_probs=133.9
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchH-------HHHHHHHHHcC-CCCCcCCCCCccHHH
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHF-------FFQLKDLHSQG-YSLLSIDSVGQTALH 96 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~g-~~~~~~d~~g~t~l~ 96 (208)
.+..|.||||+|+..|+.+++++|+++|++++.++..|.+|++... .++++.|++.+ .+++.+|..|+||||
T Consensus 127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh 206 (327)
T 1sw6_A 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH 206 (327)
T ss_dssp CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHH
Confidence 4667889999999999999999999999999999999999976332 36677777776 678999999999999
Q ss_pred HHHh----cCCHHHHHHHHHc--------------------CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc---
Q psy4236 97 YGSR----YGHKDVVKYIIAC--------------------APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--- 149 (208)
Q Consensus 97 ~a~~----~g~~~~~~~ll~~--------------------g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--- 149 (208)
+|+. .|+.+++++|++. |++ ++.. +..|.||||+|+. +++|++.
T Consensus 207 ~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~--~~~~-~~~g~t~L~~a~~------~~~Ll~~~~n 277 (327)
T 1sw6_A 207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK--PNDK-NGERKDSILENLD------LKWIIANMLN 277 (327)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------------CHHHHHCS------HHHHHHHTTT
T ss_pred HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC--cccc-cccCCChhHHHHH------HHHHHHhCCC
Confidence 9999 8999999999987 666 6666 4789999999985 6777643
Q ss_pred --CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q psy4236 150 --SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197 (208)
Q Consensus 150 --~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 197 (208)
+..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+|
T Consensus 278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 678999999999999999999999999999999999999999998765
No 53
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=1.1e-30 Score=196.97 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=153.4
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCC-ccHHHHHHhcCC
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVG-QTALHYGSRYGH 103 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g-~t~l~~a~~~g~ 103 (208)
|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+++|++++.++..| .||||+|+..|+
T Consensus 62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence 678999999999999999999999999999999999975 567899999999999999999999 899999999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcH-HHHHHhhCCHHHHHHHHhC
Q psy4236 104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTA-LHKAAMFKRRSICCMLVAG 175 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~-l~~A~~~~~~~~~~~Ll~~ 175 (208)
.+++++|++.|++ ... ...|.||||+|+..|+.+++++|++. +..|.|| ||+|+..|+.+++++|+++
T Consensus 142 ~~~v~~Ll~~g~~--~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 142 VSIVSYFLSEIPS--TFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHHHHHTTSCT--TCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred HHHHHHHHhCCCc--ccc--ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999987 422 23789999999999999999999954 5678897 9999999999999999999
Q ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 176 GASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 176 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
|++++..+. .|+..|+.+++++|++
T Consensus 218 gad~~~~~~-------~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 218 DINIYSANL-------ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp CBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred CCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence 999999884 5677999999999986
No 54
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.3e-29 Score=178.42 Aligned_cols=150 Identities=24% Similarity=0.302 Sum_probs=112.0
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV 106 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~ 106 (208)
+++.++|+.|+..|+.+++++|++++ +.+++..|..|.||||+|+..|+.++
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~ 54 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNT----------------------------ENDLNQGDDHGFSPLHWACREGRSAV 54 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCT----------------------------TSCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcC----------------------------cccccccCCCCCCHHHHHHHcCcHHH
Confidence 34567999999999999999987762 23445566777777777777777777
Q ss_pred HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236 107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL 179 (208)
Q Consensus 107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 179 (208)
+++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+++|+++
T Consensus 55 v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 131 (179)
T 3f6q_A 55 VEMLIMRGAR--INVM-NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131 (179)
T ss_dssp HHHHHHTTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 7777777776 6665 35677777777777777777777743 456777888888888888888888888888
Q ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 180 TVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+..|..|.||+++|+..++.+++++|++
T Consensus 132 ~~~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 132 SICNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp SBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred chhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877777777777765
No 55
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=5.9e-30 Score=196.48 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=142.9
Q ss_pred HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCC--------------CCCC-------CccchHHHHHHHHHHc
Q psy4236 22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPP--------------KDDH-------PNLNHFFFQLKDLHSQ 80 (208)
Q Consensus 22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~--------------~~~~-------~~~~~~~~~~~~l~~~ 80 (208)
+...+..+.++++ |+.++++.|+++|++++.... .+.+ +......++++.|++.
T Consensus 45 i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~ 119 (327)
T 1sw6_A 45 IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119 (327)
T ss_dssp CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS
T ss_pred cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc
Confidence 4444455666665 999999999999988765211 1111 1224456788999999
Q ss_pred CCCCCc-CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc-------HHHHHHHH----h
Q psy4236 81 GYSLLS-IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR-------RSICWMFL----F 148 (208)
Q Consensus 81 g~~~~~-~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~l~----~ 148 (208)
|++++. .|..|.||||+|+..|+.+++++|++.|++ ++.+ +..|+||||+|+..|+ ..+++.+. .
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad--~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~ 196 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC
Confidence 999999 899999999999999999999999999999 8877 4789999999999988 34444442 3
Q ss_pred cCCCCCcHHHHHHh----hCCHHHHHHHHhCCC---------------------------------------------CC
Q psy4236 149 FSSRGQTALHKAAM----FKRRSICCMLVAGGA---------------------------------------------SL 179 (208)
Q Consensus 149 ~~~~~~t~l~~A~~----~~~~~~~~~Ll~~g~---------------------------------------------~~ 179 (208)
.+..|.||||+|+. .|+.+++++|++.++ ++
T Consensus 197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~ 276 (327)
T 1sw6_A 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276 (327)
T ss_dssp ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC
Confidence 47889999999999 899999999987643 57
Q ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 180 TVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 180 ~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
+.+|..|+||||+|+.+|+.+++++|++.
T Consensus 277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ 305 (327)
T 1sw6_A 277 NAQDSNGDTCLNIAARLGNISIVDALLDY 305 (327)
T ss_dssp TCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 88899999999999999999999999863
No 56
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=9.9e-30 Score=186.50 Aligned_cols=171 Identities=15% Similarity=0.089 Sum_probs=150.5
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCC------CCcCCCCCcc
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYS------LLSIDSVGQT 93 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~------~~~~d~~g~t 93 (208)
..+..|.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|++.|.+ ++..+..|.|
T Consensus 40 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t 119 (236)
T 1ikn_D 40 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119 (236)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCC
Confidence 34556889999999999999999999999999999999999975 4568999999999976 4677888999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCH
Q psy4236 94 ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRR 166 (208)
Q Consensus 94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~ 166 (208)
|||+|+..|+.+++++|++.|++ ++..+...|.||||+|+..++.+++++|++. +..|.||||+|+..|+.
T Consensus 120 ~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~ 197 (236)
T 1ikn_D 120 CLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST 197 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch
Confidence 99999999999999999999998 7777433899999999999999999999965 56799999999999999
Q ss_pred HHHHHHHhCCCCCc--ccCCCCCCHHHHHHHc
Q psy4236 167 SICCMLVAGGASLT--VKDYDSNTPRALALLA 196 (208)
Q Consensus 167 ~~~~~Ll~~g~~~~--~~~~~g~t~l~~a~~~ 196 (208)
+++++|+++|++.. ..+..|.+|.+.+...
T Consensus 198 ~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 198 RIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 99999999999876 7788888887665543
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-31 Score=196.05 Aligned_cols=175 Identities=15% Similarity=0.027 Sum_probs=153.6
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
...+.++|+.|+..|+.+++++|+++|++++..+..|.+|++ .+..+++++|++.|++++.+|..|+||||+|+..
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 445678999999999999999999999999999999999975 5678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCccHHHHH--HhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKA--AMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML 172 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L 172 (208)
|+.+++++|++.|++ ++..++..|+||||+| +..++.+++++|++. +..+.+|++.++... ..++|
T Consensus 98 g~~~~v~~Ll~~ga~--~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~l 172 (229)
T 2vge_A 98 NDTVICMALVQHGAA--IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELS 172 (229)
T ss_dssp TCHHHHHHHHTTTCC--TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCC
T ss_pred CCHHHHHHHHHcCCC--cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccC
Confidence 999999999999998 7777546899999999 999999999999954 455678887554443 33678
Q ss_pred HhCCCC--CcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236 173 VAGGAS--LTVKDYDSNTPRALALLANDTELAAYL 205 (208)
Q Consensus 173 l~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~L 205 (208)
+..|++ ++.+|..|+||||+|+.+|+.++++.+
T Consensus 173 l~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp BCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred ccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 889998 778899999999999999998887653
No 58
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=4.7e-29 Score=193.88 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=147.3
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHc----CCCCcc-----------------cCCCCCCCcc----ch--HHHHHHHHHHc
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQ----GYSLKK-----------------IPPKDDHPNL----NH--FFFQLKDLHSQ 80 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~----g~~~~~-----------------~~~~~~~~~~----~~--~~~~~~~l~~~ 80 (208)
.+.||||.|+..|+.+++++|+++ |++++. .+..+.++++ .+ ..+++++|++.
T Consensus 83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ 162 (364)
T 3ljn_A 83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162 (364)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence 355666666666666666666666 666665 7778888864 45 79999999999
Q ss_pred CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCC---ccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------C
Q psy4236 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSS---ILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------S 150 (208)
Q Consensus 81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~ 150 (208)
|++++..|..|.||||+|+..|+.+++++|++.|++. .++.. +..|+||||+|+..|+.+++++|++. +
T Consensus 163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d 241 (364)
T 3ljn_A 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED 241 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999999999999999999998762 14445 46799999999999999999999965 5
Q ss_pred CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc------------cCCCCCCHHHHHHHcCCHHHHHHHh
Q psy4236 151 SRGQTALHKAAMFKRRSICCMLVAGGASLTV------------KDYDSNTPRALALLANDTELAAYLE 206 (208)
Q Consensus 151 ~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~------------~~~~g~t~l~~a~~~~~~~~~~~L~ 206 (208)
..|.||||+|+..|+.+++++|+++|++++. .+..+++|+++|+..++.+.+..|+
T Consensus 242 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll 309 (364)
T 3ljn_A 242 NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309 (364)
T ss_dssp TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHH
Confidence 6799999999999999999999999877533 5667889999999988776666554
No 59
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=1.5e-28 Score=183.91 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=132.7
Q ss_pred hhhchHHHHHHHHh---CCHHHHHHHHHcCCCCc-------c----cCCCCCCCcc----chHHHHHHHHHHcCCCCCcC
Q psy4236 26 LEKTSEGVLKAARV---GDIKMLKDLHSQGYSLK-------K----IPPKDDHPNL----NHFFFQLKDLHSQGYSLLSI 87 (208)
Q Consensus 26 ~~~~~~~l~~A~~~---g~~~~~~~Li~~g~~~~-------~----~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~ 87 (208)
+..|.||||.|+.. |+.+++++|+++|++++ . .+..+.+|++ .+..+++++|+++|++++..
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~ 130 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA 130 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence 56789999999987 99999999999987632 2 4557888865 56789999999999999999
Q ss_pred CC--------------CCccHHHHHHhcCCHHHHHHHHH---cCCCCccccCCCCCCccHHHHHHhhCc---------HH
Q psy4236 88 DS--------------VGQTALHYGSRYGHKDVVKYIIA---CAPSSILNMQDNDKGQTALHKAAMFKR---------RS 141 (208)
Q Consensus 88 d~--------------~g~t~l~~a~~~g~~~~~~~ll~---~g~~~~~~~~~~~~~~t~l~~a~~~~~---------~~ 141 (208)
+. .|.||||+|+..|+.+++++|++ .|++ ++.+ +..|+||||+|+..++ .+
T Consensus 131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad--~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~ 207 (273)
T 2pnn_A 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD--ISAR-DSVGNTVLHALVEVADNTVDNTKFVTS 207 (273)
T ss_dssp BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC--TTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC--ceee-CCCCCcHHHHHHHccCcchhHHHHHHH
Confidence 87 79999999999999999999999 8988 8877 4789999999999887 78
Q ss_pred HHHHHHh--------------cCCCCCcHHHHHHhhCCHHHHHHHHhCCC-CCcccCCCCCCHHH
Q psy4236 142 ICWMFLF--------------FSSRGQTALHKAAMFKRRSICCMLVAGGA-SLTVKDYDSNTPRA 191 (208)
Q Consensus 142 ~~~~l~~--------------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~l~ 191 (208)
++++|++ ++..|.||||+|+..|+.+++++|+++|+ |+......+.+|.+
T Consensus 208 ~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 8998883 47789999999999999999999999999 88877777766643
No 60
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=1.3e-27 Score=170.93 Aligned_cols=151 Identities=23% Similarity=0.206 Sum_probs=136.3
Q ss_pred HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHH-HcCCCCCcCCCCCccHHHH
Q psy4236 23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLH-SQGYSLLSIDSVGQTALHY 97 (208)
Q Consensus 23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~-~~g~~~~~~d~~g~t~l~~ 97 (208)
...+..+.||||.|+..|+.+++++|+++|++++..+..+.+|++ .+..+++++|+ ..+.+++..+..|.||||+
T Consensus 33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~ 112 (201)
T 3hra_A 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112 (201)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHH
Confidence 334566889999999999999999999999999999999999975 56789999999 6777999999999999999
Q ss_pred HHhcCCHHHHHHHHHcC-CCCccccCCCCCCccHHHHHHhhCc-----HHHHHHHHhc-------CCCCCcHHHHHHhhC
Q psy4236 98 GSRYGHKDVVKYIIACA-PSSILNMQDNDKGQTALHKAAMFKR-----RSICWMFLFF-------SSRGQTALHKAAMFK 164 (208)
Q Consensus 98 a~~~g~~~~~~~ll~~g-~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~-------~~~~~t~l~~A~~~~ 164 (208)
|+..|+.+++++|++.| ++ ++.. +..|+||||+|+..+. .+++++|++. +..|.||||+|+..|
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 189 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGRED--IDFQ-NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCC--TTCC-CTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCC--cCCC-CCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Confidence 99999999999999999 66 7777 4789999999999887 9999999954 567999999999999
Q ss_pred CHHHHHHHHhCC
Q psy4236 165 RRSICCMLVAGG 176 (208)
Q Consensus 165 ~~~~~~~Ll~~g 176 (208)
+.+++++|+++|
T Consensus 190 ~~~~~~~Ll~~G 201 (201)
T 3hra_A 190 YTEISKILAQYN 201 (201)
T ss_dssp CHHHHHHHHTCC
T ss_pred CHhHHHHHHhcC
Confidence 999999999876
No 61
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1.4e-27 Score=166.41 Aligned_cols=128 Identities=27% Similarity=0.338 Sum_probs=105.7
Q ss_pred HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
+...+..|.|||+.|+..++.++++.|+++|++ ++.+|..|+||||+|+..
T Consensus 30 vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----------------------------~~~~d~~g~TpLh~A~~~ 80 (169)
T 4gpm_A 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----------------------------VNAKDSDGRTPLHHAAEN 80 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------------------TTCCCTTSCCHHHHHHHT
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----------------------------hhhhccCCCCHHHHHHHc
Confidence 334456788999999999999999997665554 456788899999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA 174 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~ 174 (208)
|+.+++++|++.|++ ++.+ +..|+||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|++
T Consensus 81 g~~~~v~~Ll~~gad--vn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 81 GHKEVVKLLISKGAD--VNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp TCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHCcCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999988 7777 47899999999999999999999854 5678999999999999999999999
Q ss_pred CCCCCcc
Q psy4236 175 GGASLTV 181 (208)
Q Consensus 175 ~g~~~~~ 181 (208)
+|++++.
T Consensus 158 ~GA~ie~ 164 (169)
T 4gpm_A 158 QGGWLEH 164 (169)
T ss_dssp C------
T ss_pred CCCCcCC
Confidence 9999874
No 62
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.95 E-value=2.4e-27 Score=173.20 Aligned_cols=139 Identities=24% Similarity=0.300 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHc-CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCcc---ccCCCCCCccHHHHHHhhCcHHHH
Q psy4236 68 NHFFFQLKDLHSQ-GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSIL---NMQDNDKGQTALHKAAMFKRRSIC 143 (208)
Q Consensus 68 ~~~~~~~~~l~~~-g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~---~~~~~~~~~t~l~~a~~~~~~~~~ 143 (208)
.+..+++++|++. |++++.+|..|+||||+|+..|+.+++++|++.|++... +.. +..|.||||+|+..|+.+++
T Consensus 13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v 91 (232)
T 2rfa_A 13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE-LYEGQTALHIAVINQNVNLV 91 (232)
T ss_dssp TTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCST-TTTTCCHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccccccc-CCCCcCHHHHHHHcCCHHHH
Confidence 5668999999998 999999999999999999999999999999999987211 333 35799999999999999999
Q ss_pred HHHHhcC--------------------CCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH-
Q psy4236 144 WMFLFFS--------------------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA- 202 (208)
Q Consensus 144 ~~l~~~~--------------------~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~- 202 (208)
++|++.+ ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.+|+.+++
T Consensus 92 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~ 171 (232)
T 2rfa_A 92 RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC 171 (232)
T ss_dssp HHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHH
T ss_pred HHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHH
Confidence 9999552 2599999999999999999999999999999999999999999999999988
Q ss_pred ---HHHhh
Q psy4236 203 ---AYLEK 207 (208)
Q Consensus 203 ---~~L~~ 207 (208)
++|++
T Consensus 172 ~i~~~Ll~ 179 (232)
T 2rfa_A 172 QMYNLLLS 179 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77765
No 63
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=177.26 Aligned_cols=150 Identities=24% Similarity=0.260 Sum_probs=137.8
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCC-CCcccCCCCCCCcc---------chHHHHHHHHHHcCCCCCcCCCCCcc
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGY-SLKKIPPKDDHPNL---------NHFFFQLKDLHSQGYSLLSIDSVGQT 93 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~-~~~~~~~~~~~~~~---------~~~~~~~~~l~~~g~~~~~~d~~g~t 93 (208)
..+..|.||||.|+..|+.+++++|+++|+ +++..+..|.+|++ .+..+++++|++.|..++..+..|.|
T Consensus 106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 185 (276)
T 4hbd_A 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT 185 (276)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCC
Confidence 345678999999999999999999999998 99999999999864 36688999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh--------cCCCCCcHHHHHHhhCC
Q psy4236 94 ALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF--------FSSRGQTALHKAAMFKR 165 (208)
Q Consensus 94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~--------~~~~~~t~l~~A~~~~~ 165 (208)
|||+|+..|+.+++++|++.|++ ++.+ +..|+||||+|+..|+.+++++|++ .+..|.||||+|+..|+
T Consensus 186 pLh~A~~~g~~~~v~~Ll~~gad--~n~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 186 ALMLAVSHGRVDVVKALLACEAD--VNVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCC--CCCC-CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence 99999999999999999999999 8887 4789999999999999999999997 26779999999999999
Q ss_pred HHHHHHHHhCC
Q psy4236 166 RSICCMLVAGG 176 (208)
Q Consensus 166 ~~~~~~Ll~~g 176 (208)
.+++++|++++
T Consensus 263 ~~iv~~Ll~~~ 273 (276)
T 4hbd_A 263 SEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 99999999853
No 64
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=3.3e-28 Score=178.93 Aligned_cols=148 Identities=25% Similarity=0.260 Sum_probs=94.3
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV 106 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~ 106 (208)
..|.|||+.|++.|+.+.++.|+++|++++. +..|.||||.|+..|+.++
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~------------------------------~~~~~t~L~~A~~~g~~~~ 52 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF------------------------------NPLPLALLLDSSLEGEFDL 52 (239)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHHHTCHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCccc------------------------------CchhhHHHHHHHHcCCHHH
Confidence 3578999999999999999998888877642 2456788888888888888
Q ss_pred HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236 107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL 179 (208)
Q Consensus 107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 179 (208)
+++|++.|++ ++.. +..|.||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|+++|+++
T Consensus 53 v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 129 (239)
T 1ycs_B 53 VQRIIYEVDD--PSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129 (239)
T ss_dssp HHHHTSTTSS--CCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 8888888877 7666 46788888888888888888888854 466888888888888888888888888888
Q ss_pred cccCCCCC-CHHHHH--HHcCCHHHHHHHhh
Q psy4236 180 TVKDYDSN-TPRALA--LLANDTELAAYLEK 207 (208)
Q Consensus 180 ~~~~~~g~-t~l~~a--~~~~~~~~~~~L~~ 207 (208)
+..+..|. ||+|+| +.+|+.+++++|++
T Consensus 130 ~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred ceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 88887776 899888 77788888888875
No 65
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=2.1e-27 Score=159.89 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=115.1
Q ss_pred CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCC-
Q psy4236 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSR- 152 (208)
Q Consensus 81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~- 152 (208)
+.+++.++..|.||||+|+..|+.+++++|++.|++ ++.. +..|+||||+|+. ++.+++++|++. +..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD--PNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC--TTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC--cCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence 467888999999999999999999999999999988 7777 4789999999999 999999999965 455
Q ss_pred CCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 153 ~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
|.||||+|+..|+.+++++|++.|++++..|..|.||+|+|+.+++.+++++|++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 132 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999986
No 66
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=5.1e-27 Score=174.04 Aligned_cols=154 Identities=18% Similarity=0.083 Sum_probs=136.5
Q ss_pred hhhhchHHHHHHHHh---CCHHHHHHHHHcCCCCcccC-----------CCCCCCcc----chHHHHHHHHHHcCCCCCc
Q psy4236 25 ILEKTSEGVLKAARV---GDIKMLKDLHSQGYSLKKIP-----------PKDDHPNL----NHFFFQLKDLHSQGYSLLS 86 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~---g~~~~~~~Li~~g~~~~~~~-----------~~~~~~~~----~~~~~~~~~l~~~g~~~~~ 86 (208)
.+..|.||||.|+.. |+.+++++|+++|++++..+ ..+.+|++ .+..+++++|+++|++++.
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 118 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL 118 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence 466789999999999 99999999999999887544 56788865 5678999999999999999
Q ss_pred CCCC-------------CccHHHHHHhcCCHHHHHHHHH---cCCCCccccCCCCCCccHHHHHHh--hCcHH-------
Q psy4236 87 IDSV-------------GQTALHYGSRYGHKDVVKYIIA---CAPSSILNMQDNDKGQTALHKAAM--FKRRS------- 141 (208)
Q Consensus 87 ~d~~-------------g~t~l~~a~~~g~~~~~~~ll~---~g~~~~~~~~~~~~~~t~l~~a~~--~~~~~------- 141 (208)
.+.. |.||||+|+..|+.+++++|++ .|++ ++.+ +..|+||||+|+. .++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~--~n~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS--LEAT-DSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC--TTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC--cCcc-CCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 9886 9999999999999999999999 8988 8887 4789999999998 77887
Q ss_pred HHHHHHh--------------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcc
Q psy4236 142 ICWMFLF--------------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181 (208)
Q Consensus 142 ~~~~l~~--------------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~ 181 (208)
++++|++ ++..|.||||+|+..|+.+++++|+++|.+...
T Consensus 196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC
Confidence 9999874 357799999999999999999999998877554
No 67
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=2.7e-27 Score=167.59 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=102.5
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH----
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK---- 104 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~---- 104 (208)
++++|+.|++.|+.+.++.+++.+.+. .+ +..|+||||+|+..|+.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~----------------------------~~~g~T~Lh~A~~~~~~~~~~ 55 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KE----------------------------SVLKSNILYDVLRNNNDEARY 55 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HH----------------------------HHHTTTHHHHHTTCSCHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--cc----------------------------ccCCCCHHHHHHHcCCcchHH
Confidence 457899999999999999988765432 11 14455666666665543
Q ss_pred HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCc------HHHHHHHHhc-------CCCCC-cHHHHHHhhC-----C
Q psy4236 105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR------RSICWMFLFF-------SSRGQ-TALHKAAMFK-----R 165 (208)
Q Consensus 105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~------~~~~~~l~~~-------~~~~~-t~l~~A~~~~-----~ 165 (208)
+++++|++.|++ ++.++ ..|+||||+|+..++ .+++++|++. +..|. ||||+|+..+ .
T Consensus 56 ~iv~~Ll~~Gad--vn~~d-~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~ 132 (186)
T 3t8k_A 56 KISMFLINKGAD--IKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEM 132 (186)
T ss_dssp HHHHHHHHTTCC--SSCCC-TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHH
T ss_pred HHHHHHHHCCCC--CCCCC-CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhH
Confidence 356666666665 55552 556666666665553 3455555533 34455 6666666633 3
Q ss_pred HHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 166 RSICCMLVA-GGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 166 ~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
.+++++|++ +|+|++.+|..|.||||+|+..|+.+++++|.+
T Consensus 133 ~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 133 IPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175 (186)
T ss_dssp HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 568999999 999999999999999999999999999999864
No 68
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=6.4e-27 Score=161.14 Aligned_cols=140 Identities=15% Similarity=0.119 Sum_probs=83.4
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc---chHHHHHHHHHHcCCCCCcCCCCCcc-HHHHHHh
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL---NHFFFQLKDLHSQGYSLLSIDSVGQT-ALHYGSR 100 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~d~~g~t-~l~~a~~ 100 (208)
....+.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|+++|++++.+|..|.| |||+|+.
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~ 87 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAR 87 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence 3556789999999999999999988888777765555555543 33455555555555555555555555 5555555
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLT 180 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 180 (208)
.|+.+++++|++.|++ ++.. +..|.||||+|+..|+.+++++|+++|++++
T Consensus 88 ~~~~~~v~~Ll~~ga~--~~~~---------------------------d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~ 138 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGAR--LDVR---------------------------DAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138 (156)
T ss_dssp HTCHHHHHHHHHHTCC--SSCC---------------------------CTTCCCHHHHHHHHTCHHHHHHHSSCC----
T ss_pred CCCHHHHHHHHHcCCC--Cccc---------------------------CCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC
Confidence 5555555555555554 3332 3456777777778888999999999999999
Q ss_pred ccCCCCCCHHHHH
Q psy4236 181 VKDYDSNTPRALA 193 (208)
Q Consensus 181 ~~~~~g~t~l~~a 193 (208)
..+..|.||.+-+
T Consensus 139 ~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 139 GSNHARIDAAEGP 151 (156)
T ss_dssp -------------
T ss_pred ccCcCcCcccccC
Confidence 9999999988743
No 69
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=1e-25 Score=151.62 Aligned_cols=125 Identities=26% Similarity=0.330 Sum_probs=101.2
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD 105 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~ 105 (208)
...+.+|||.|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----------------------------~~~~~~~g~t~L~~A~~~~~~~ 61 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGAD-----------------------------VNAKDEYGLTPLYLATAHGHLE 61 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTSCCHHHHHHHHTCHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCC-----------------------------CCCcCCCCCCHHHHHHHcCCHH
Confidence 44567889999999999998886665544 4457778889999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCcccCCC
Q psy4236 106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185 (208)
Q Consensus 106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 185 (208)
++++|++.|++ ++..+ . .|.||||+|+..|+.+++++|+++|++++..|..
T Consensus 62 ~v~~Ll~~g~~--~~~~d-~--------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 112 (136)
T 2jab_A 62 IVEVLLKNGAD--VNAVD-A--------------------------IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112 (136)
T ss_dssp HHHHHHHTTCC--TTCCC-T--------------------------TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHHcCCC--CCcCC-C--------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC
Confidence 99999988877 55442 3 3556666666777788888999999999999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 186 SNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 186 g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
|.||+++|+.+|+.+++++|++.
T Consensus 113 g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 113 GKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999999999999863
No 70
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=1.6e-26 Score=171.71 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=132.2
Q ss_pred hhchHHHHHHH---HhCCHHHHHHHHHcCCC-----------CcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCC
Q psy4236 27 EKTSEGVLKAA---RVGDIKMLKDLHSQGYS-----------LKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSID 88 (208)
Q Consensus 27 ~~~~~~l~~A~---~~g~~~~~~~Li~~g~~-----------~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d 88 (208)
..|.||||.|+ ..|+.+++++|+++|++ ++..+..+.+|++ .+..+++++|+++|++++..+
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 123 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence 55889999999 67999999999999855 3334447778865 567899999999999999998
Q ss_pred --------------CCCccHHHHHHhcCCHHHHHHHHH---cCCCCccccCCCCCCccHHHHHHhhCc---------HHH
Q psy4236 89 --------------SVGQTALHYGSRYGHKDVVKYIIA---CAPSSILNMQDNDKGQTALHKAAMFKR---------RSI 142 (208)
Q Consensus 89 --------------~~g~t~l~~a~~~g~~~~~~~ll~---~g~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~ 142 (208)
..|.||||+|+..|+.+++++|++ .|++ ++.+ +..|+||||+|+..++ .++
T Consensus 124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~--~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~ 200 (260)
T 3jxi_A 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD--LRRQ-DSRGNTVLHALVAIADNTRENTKFVTKM 200 (260)
T ss_dssp EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC--TTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC--Cccc-CCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence 689999999999999999999999 8888 8877 4789999999998877 688
Q ss_pred HHHHHh--------------cCCCCCcHHHHHHhhCCHHHHHHHHhCCCCCccc
Q psy4236 143 CWMFLF--------------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVK 182 (208)
Q Consensus 143 ~~~l~~--------------~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 182 (208)
+++|++ .+..|.||||+|+..|+.+++++|+++|.+....
T Consensus 201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccc
Confidence 888873 3578999999999999999999999998776543
No 71
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=1.3e-26 Score=156.19 Aligned_cols=123 Identities=24% Similarity=0.243 Sum_probs=110.0
Q ss_pred CCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCC
Q psy4236 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRG 153 (208)
Q Consensus 81 g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~ 153 (208)
|+++ .+|..|.||||+|+..|+.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 76 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD--PNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence 5667 6889999999999999999999999999988 7777 47899999999999999999999964 4568
Q ss_pred CcHHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 154 QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 154 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
.||||+|+..|+.+++++|++.|++++..|..|.||+++|+..+..+++++|.+
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 899999999999999999999999999999999999999999999999887764
No 72
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1.8e-28 Score=190.86 Aligned_cols=180 Identities=17% Similarity=0.036 Sum_probs=142.5
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCC---cccCCCCCCCcc----chHHHHHHHHHHcCCCC---CcCCCCCcc
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSL---KKIPPKDDHPNL----NHFFFQLKDLHSQGYSL---LSIDSVGQT 93 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~---~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~---~~~d~~g~t 93 (208)
+...++.||||.|++.|+.+++++|+++|+.. +..+..+.+|++ .++.+++++|+++|+++ +..+.. .|
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~T 165 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YH 165 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HH
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CC
Confidence 33445669999999999999999999999832 122334445643 67799999999999763 222223 89
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCcccc--CCCCCCccHHHHHH-hhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHH
Q psy4236 94 ALHYGSRYGHKDVVKYIIACAPSSILNM--QDNDKGQTALHKAA-MFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICC 170 (208)
Q Consensus 94 ~l~~a~~~g~~~~~~~ll~~g~~~~~~~--~~~~~~~t~l~~a~-~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~ 170 (208)
|||+|+..|+.+++++|++.|++ ++. . +..|.||||+|+ ..|+.+++++|++.+..+.||||.|+..|+.++++
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~--~~~~~~-d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPT--EATAMI-QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGG--GHHHHH-HHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCc--cchhcc-CCCCCCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHH
Confidence 99999999999999999999987 544 4 356899999999 99999999999998778999999999999999999
Q ss_pred HHHhCCCCCc-------------------------------------------------------------ccCCCCCCH
Q psy4236 171 MLVAGGASLT-------------------------------------------------------------VKDYDSNTP 189 (208)
Q Consensus 171 ~Ll~~g~~~~-------------------------------------------------------------~~~~~g~t~ 189 (208)
+|+++|++++ .....+.+|
T Consensus 243 lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~ 322 (376)
T 2aja_A 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322 (376)
T ss_dssp HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred HHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence 9987664321 112345678
Q ss_pred HHHHHHcCCHHHHHHHhh
Q psy4236 190 RALALLANDTELAAYLEK 207 (208)
Q Consensus 190 l~~a~~~~~~~~~~~L~~ 207 (208)
+++|+.+|+.+++++|++
T Consensus 323 L~~A~~~g~~e~v~lLl~ 340 (376)
T 2aja_A 323 LRLALRLGNQGACALLLS 340 (376)
T ss_dssp HHHHHHHTCTTHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHc
Confidence 999999999999999986
No 73
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.93 E-value=4.4e-25 Score=161.47 Aligned_cols=151 Identities=21% Similarity=0.165 Sum_probs=133.9
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC-
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH- 103 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~- 103 (208)
+.|||+.|+..|+.+++++|+++|++++..+..+.+++. .+..+++++|+++|++++..+..|.||||+|+..+.
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~ 155 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS 155 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence 678999999999999999999999999999999998864 566899999999999999999999999999997765
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236 104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG 176 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g 176 (208)
.+++++|++.|++ ++..+...|.||||+|+..++.+++++|++. +..|.||+++|+..|+.+++++|++.|
T Consensus 156 ~~~~~~L~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 156 VDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp STTHHHHHHTTCC--TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCC--cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 8999999999998 7776434799999999999999999999965 567899999999999999999999988
Q ss_pred CCCcc
Q psy4236 177 ASLTV 181 (208)
Q Consensus 177 ~~~~~ 181 (208)
++...
T Consensus 234 ~~~~~ 238 (240)
T 3eu9_A 234 QAKGY 238 (240)
T ss_dssp -----
T ss_pred hccCc
Confidence 87654
No 74
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=3e-25 Score=157.74 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=113.6
Q ss_pred CCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcH
Q psy4236 84 LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTA 156 (208)
Q Consensus 84 ~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~ 156 (208)
++.+|..|+||||+|+..|+.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK--LEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc--cccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 457899999999999999999999999999988 7777 47899999999999999999999954 5679999
Q ss_pred HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999863
No 75
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=9.6e-25 Score=144.47 Aligned_cols=115 Identities=30% Similarity=0.426 Sum_probs=107.7
Q ss_pred CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHh
Q psy4236 90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAM 162 (208)
Q Consensus 90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~ 162 (208)
+|.||||+|+..|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC--CCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence 488999999999999999999999988 7776 47899999999999999999999854 5678999999999
Q ss_pred hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
.|+.+++++|++.|++++..|..|.||+++|+..|+.+++++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 122 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986
No 76
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=2.1e-25 Score=155.83 Aligned_cols=134 Identities=18% Similarity=0.140 Sum_probs=108.6
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH 103 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~ 103 (208)
..+..+.||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADP-----------------------------HILAKERESALSLASTGGY 81 (172)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-----------------------------TCCCTTCCCHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------------------------hhhcccCCCHHHHHHHCCC
Confidence 34567889999999999999999977666554 4567788899999999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC
Q psy4236 104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG 176 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g 176 (208)
.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+++|
T Consensus 82 ~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 82 TDIVGLLLERDVD--INIY-DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp HHHHHHHHTTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 9999999998888 7776 47789999999999999999998854 466889999999999999999999999
Q ss_pred CCCcccCCCCCCH
Q psy4236 177 ASLTVKDYDSNTP 189 (208)
Q Consensus 177 ~~~~~~~~~g~t~ 189 (208)
+++...+..|.||
T Consensus 159 ~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 LKLFQSNLVPADP 171 (172)
T ss_dssp HHHSCC-------
T ss_pred HHHhcccCCCCCC
Confidence 9988888888776
No 77
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=3.2e-25 Score=152.60 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=107.9
Q ss_pred CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCc-H
Q psy4236 85 LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQT-A 156 (208)
Q Consensus 85 ~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t-~ 156 (208)
+..+..|.||||+|+..|+.+++++|++.|++ ++.. +..|+||||+|+ .++.+++++|++. +..|.| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN--PNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC--CCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 34567899999999999999999999999988 7777 478999999985 8999999999965 456888 9
Q ss_pred HHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 157 LHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 157 l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
||+|+..|+.+++++|+++|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ 133 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999863
No 78
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=2.3e-24 Score=142.62 Aligned_cols=119 Identities=29% Similarity=0.400 Sum_probs=100.3
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV 107 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~ 107 (208)
+|.||||.|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------------------------~~~~~~g~t~L~~A~~~~~~~~~ 51 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-----------------------------NAKDKNGRTPLHLAARNGHLEVV 51 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-----------------------------TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-----------------------------CCcCCCCCcHHHHHHHcCcHHHH
Confidence 3779999999999999999977766554 45677788899999999999999
Q ss_pred HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCC
Q psy4236 108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS 178 (208)
Q Consensus 108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~ 178 (208)
++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.|||++|+..|+.+++++|+++|+|
T Consensus 52 ~~Ll~~g~~--~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 52 KLLLEAGAD--VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHcCCC--Cccc-CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999988887 6666 46788999999999999999988854 45688999999999999999999998875
No 79
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=1.7e-24 Score=152.76 Aligned_cols=137 Identities=23% Similarity=0.281 Sum_probs=93.9
Q ss_pred HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
..+.+..+.||||.|+..|+.++++.|++ |+++ +.+|..|+||||+|+..
T Consensus 37 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-----------------------------~~~d~~g~t~L~~A~~~ 86 (183)
T 3deo_A 37 AADVVSEYETPWWTAARKADEQALSQLLE-DRDV-----------------------------DAVDENGRTALLFVAGL 86 (183)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-----------------------------TCCCTTSCCHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-----------------------------CCcCCCCCCHHHHHHHc
Confidence 34556788999999999999999999766 5555 45566677777777777
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHh
Q psy4236 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVA 174 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~ 174 (208)
|+.+++++|++.|++ ++..++..|+||||+|+..++.+++++|++. +..|.||||+|+..++.
T Consensus 87 ~~~~~v~~Ll~~ga~--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------- 156 (183)
T 3deo_A 87 GSDKCVRLLAEAGAD--LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------- 156 (183)
T ss_dssp TCHHHHHHHHHTTCC--TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------
T ss_pred CCHHHHHHHHHcCCC--CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------
Confidence 777777777777766 5555335566777777766666666666643 45566777766654322
Q ss_pred CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 175 GGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 175 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
..+.+|+++|+..|..+++++|.+
T Consensus 157 ---------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 157 ---------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp ---------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred ---------cccccHHHHHHHcCHHHHHHHHHH
Confidence 234567777777777777777754
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=2.7e-24 Score=144.65 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=70.4
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccc---hHHHHHHHHHHcCCCCCcCCCC-CccHHHHHHh
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLN---HFFFQLKDLHSQGYSLLSIDSV-GQTALHYGSR 100 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~d~~-g~t~l~~a~~ 100 (208)
.+..+.||||.|+..|+.+++++|+++|++++..+..+.+|++. +..+++++|+++|++++.+|.. |.||||+|+.
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 87 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAR 87 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTTSCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence 35668899999999999999999888887776655555544321 3445555555555555555555 5555555555
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~ 147 (208)
.|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|+
T Consensus 88 ~~~~~~v~~Ll~~ga~--~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll 131 (136)
T 1d9s_A 88 EGFLDTLVVLHRAGAR--LDVC-DAWGRLPVDLAEEQGHRDIARYLH 131 (136)
T ss_dssp HTCHHHHHHHHHTCCC--CCCC-SSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 5555555555555544 4433 233444444444444444444333
No 81
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=5e-25 Score=160.91 Aligned_cols=143 Identities=19% Similarity=0.152 Sum_probs=65.3
Q ss_pred HHHHHcCCCCcccCCCCCCCc-------cchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCc
Q psy4236 46 KDLHSQGYSLKKIPPKDDHPN-------LNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSI 118 (208)
Q Consensus 46 ~~Li~~g~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~ 118 (208)
+.|+++|++++..+..+.++. ..+..+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-- 79 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-- 79 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--
Confidence 455666666555444333321 12334455555555555555555555555555555555555555555544
Q ss_pred cccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHH--HhhCCHHHHHHHHhCCCCCcccCCCCCC
Q psy4236 119 LNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKA--AMFKRRSICCMLVAGGASLTVKDYDSNT 188 (208)
Q Consensus 119 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A--~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 188 (208)
++.. +..|+||||+|+..|+.+++++|++. +..|.||||+| +..|+.+++++|++.|++++..|..|.+
T Consensus 80 ~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 158 (229)
T 2vge_A 80 VNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY 158 (229)
T ss_dssp TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence 4444 23455555555555555555555432 12444555555 4455555555555555555555544444
Q ss_pred HHH
Q psy4236 189 PRA 191 (208)
Q Consensus 189 ~l~ 191 (208)
|++
T Consensus 159 ~l~ 161 (229)
T 2vge_A 159 ALW 161 (229)
T ss_dssp ESS
T ss_pred HHH
Confidence 444
No 82
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=2.6e-24 Score=158.63 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=93.2
Q ss_pred HHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCC-CCCccHHHH
Q psy4236 23 INILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSID-SVGQTALHY 97 (208)
Q Consensus 23 ~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d-~~g~t~l~~ 97 (208)
.+.+..|.||||.|++.|+.++++.|++ |++++..+..|.+|++ .+..+++++|+++|++++.++ ..|.||||+
T Consensus 39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 39 ADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 4556788999999999999999999888 7777776666666653 344566666666666666665 556666666
Q ss_pred HHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236 98 GSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGA 177 (208)
Q Consensus 98 a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~g~ 177 (208)
|+..|+.+++++|++.|++ ++.. +..|.||||+|+..+ ....+.+||++|+..|+.+++++|++.+.
T Consensus 118 A~~~g~~~~v~~Ll~~ga~--~~~~-d~~g~t~l~~A~~~~----------~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGAD--IEVE-DERGLTALELAREIL----------KTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCC--TTCC-CTTCCCHHHHHHHHH----------TTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHcCCHHHHHHHHHCCCC--CCCC-CCCCCcHHHHHHHHH----------hccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 6666666666666666665 5555 355666666665421 23445666666666666666666665433
No 83
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=3e-24 Score=148.38 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=102.9
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH 103 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~ 103 (208)
..+..+.||||.|+. |+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus 33 ~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 33 AQNGFGRTALQVMKL-GNPEIARRLLLRGANP-----------------------------DLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-----------------------------TCCCTTSCCHHHHHHHHTC
T ss_pred ccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-----------------------------CCCCCCCCCHHHHHHHcCC
Confidence 345668899999999 9999999977666554 5577788999999999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHHHHHhhCCHHHHHHHHhC
Q psy4236 104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLVAG 175 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~~A~~~~~~~~~~~Ll~~ 175 (208)
.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|+..|+.+++++|+++
T Consensus 83 ~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 83 LDTLQTLLEFQAD--VNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp HHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999988 7777 47899999999999999999999854 34688999999999999999999999
Q ss_pred CCC
Q psy4236 176 GAS 178 (208)
Q Consensus 176 g~~ 178 (208)
|+|
T Consensus 160 GAd 162 (162)
T 1ihb_A 160 GAG 162 (162)
T ss_dssp C--
T ss_pred CCC
Confidence 986
No 84
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=6.4e-24 Score=147.55 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=108.0
Q ss_pred CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHh
Q psy4236 90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAM 162 (208)
Q Consensus 90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~ 162 (208)
.|.||||.|+..|+.+++++|++.+++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV--INHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC--cCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 578999999999999999999999987 7777 47899999999999999999999965 5678899999999
Q ss_pred hCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 163 FKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 163 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
.|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986
No 85
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=6.9e-24 Score=149.08 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=111.8
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK 104 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~ 104 (208)
.+..+.||||.|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~~~~ 85 (179)
T 3f6q_A 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARI-----------------------------NVMNRGDDTPLHLAASHGHR 85 (179)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------------TCCCTTCCCHHHHHHHTTCH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-----------------------------CCcCCCCCCHHHHHHHcCCH
Confidence 4556789999999999999999977666554 45777888999999999999
Q ss_pred HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCC
Q psy4236 105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGA 177 (208)
Q Consensus 105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~ 177 (208)
+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||+++|+..++.+++++|++.|+
T Consensus 86 ~~v~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 86 DIVQKLLQYKAD--INAV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp HHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999988 7777 47889999999999999999999854 5678999999999999999999999999
Q ss_pred CCcccCCCC
Q psy4236 178 SLTVKDYDS 186 (208)
Q Consensus 178 ~~~~~~~~g 186 (208)
+++..+..+
T Consensus 163 ~~~~~~~~~ 171 (179)
T 3f6q_A 163 NLNRIPYKD 171 (179)
T ss_dssp CCSCBCCCC
T ss_pred CcccCCccc
Confidence 999877654
No 86
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=1.8e-23 Score=145.71 Aligned_cols=118 Identities=29% Similarity=0.343 Sum_probs=108.5
Q ss_pred CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHH
Q psy4236 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKA 160 (208)
Q Consensus 88 d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A 160 (208)
...+.++|+.|+..|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGAD--VNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 34677999999999999999999999988 7777 47899999999999999999999965 45689999999
Q ss_pred HhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 161 AMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 161 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 135 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999863
No 87
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=9.3e-25 Score=160.46 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=113.4
Q ss_pred HhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCC
Q psy4236 24 NILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGH 103 (208)
Q Consensus 24 ~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~ 103 (208)
+....+.||||.|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+
T Consensus 32 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----------------------------~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 32 KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD-----------------------------PSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp -----CHHHHHHHHHHTCHHHHHHHTSTTSS-----------------------------CCCCCTTSCCHHHHHHHHTC
T ss_pred ccCchhhHHHHHHHHcCCHHHHHHHHHcCCC-----------------------------CCCcCCCCCCHHHHHHHcCC
Confidence 3446678999999999999999997665554 45677888899999999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcC-------CCCC-cHHHHH--HhhCCHHHHHHHH
Q psy4236 104 KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQ-TALHKA--AMFKRRSICCMLV 173 (208)
Q Consensus 104 ~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-------~~~~-t~l~~A--~~~~~~~~~~~Ll 173 (208)
.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++.+ ..+. ||+|+| +..|+.+++++|+
T Consensus 83 ~~~v~~Ll~~ga~--~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll 159 (239)
T 1ycs_B 83 TEIVKFLVQFGVN--VNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159 (239)
T ss_dssp HHHHHHHHHHTCC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred HHHHHHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence 9999999999888 7777 467899999999999999999988652 3344 999998 7788899999999
Q ss_pred hCCCCCccc---------CCCCCCHHHHHHHcCC
Q psy4236 174 AGGASLTVK---------DYDSNTPRALALLAND 198 (208)
Q Consensus 174 ~~g~~~~~~---------~~~g~t~l~~a~~~~~ 198 (208)
+.|++++.. +..+.++.+++...|.
T Consensus 160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 998888765 5557777777766664
No 88
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=8.3e-24 Score=139.80 Aligned_cols=111 Identities=24% Similarity=0.205 Sum_probs=97.7
Q ss_pred CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHH
Q psy4236 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKA 160 (208)
Q Consensus 88 d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A 160 (208)
+..|.||||+|+..|+.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED--VNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC--TTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC--cCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 45688999999999999999999999988 7777 47899999999999999999999954 56799999999
Q ss_pred HhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q psy4236 161 AMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAY 204 (208)
Q Consensus 161 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 204 (208)
+..|+.+++++|+++|++++..|..|.||+++|. ..++.++
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~l 121 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIKAL 121 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHHHH
Confidence 9999999999999999999999999999999994 4444443
No 89
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=159.52 Aligned_cols=138 Identities=19% Similarity=0.194 Sum_probs=100.8
Q ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc---CCHHH
Q psy4236 30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY---GHKDV 106 (208)
Q Consensus 30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~---g~~~~ 106 (208)
.++|+.|+..|+.+.++.|++.|++++..... ...+..|.||||+|+.. |+.++
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~-----------------------~~~~~~g~t~Lh~A~~~~~~~~~~i 208 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPG-----------------------PDAQAPEELVLHLAVKVANQASLPL 208 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEEC-----------------------SSSCSCEECHHHHHHHTCCTTTHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCC-----------------------cccCCCCccHHHHHHHhcccCcHHH
Confidence 35799999999999999988888877652100 01466788888888876 77888
Q ss_pred HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236 107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL 179 (208)
Q Consensus 107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 179 (208)
+++|++.|++ ++.. +..|+||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|++.|++
T Consensus 209 v~~Ll~~gad--vn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~- 284 (301)
T 2b0o_E 209 VDFIIQNGGH--LDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG- 284 (301)
T ss_dssp HHHHHHHSSC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHhcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-
Confidence 8888888877 7766 36788888888888888888888754 45678888888888888888888887765
Q ss_pred cccCCCCCCHHHHHHHcCCH
Q psy4236 180 TVKDYDSNTPRALALLANDT 199 (208)
Q Consensus 180 ~~~~~~g~t~l~~a~~~~~~ 199 (208)
.|.||||+|+.+|+.
T Consensus 285 -----~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 -----TFAFPLHVDYSWVIS 299 (301)
T ss_dssp -----TTSSCCC--------
T ss_pred -----CCCChhHHHHhcCCc
Confidence 467888888887753
No 90
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.90 E-value=4e-23 Score=141.55 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=71.4
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHH
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD 105 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~ 105 (208)
+..+.||||.|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+
T Consensus 31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------------------~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-----------------------------TKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-----------------------------CTTCCCHHHHHHHHTCHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-----------------------------CCCCCCHHHHHHHcChHH
Confidence 456889999999999999999988777766554 445555555555555555
Q ss_pred HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHH
Q psy4236 106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCML 172 (208)
Q Consensus 106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~L 172 (208)
++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||+|+|+..|+.+++++|
T Consensus 82 ~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 82 IVEVLLKHGAD--VNAK-DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 55555555555 4444 24455555555555555555555532 33455555555555555555554
No 91
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=5.5e-23 Score=142.52 Aligned_cols=120 Identities=23% Similarity=0.232 Sum_probs=106.4
Q ss_pred CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHH
Q psy4236 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHK 159 (208)
Q Consensus 87 ~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~ 159 (208)
.+..+.+|||.|+..|+.+++++|++.+.. .+... +..|.||||+|+..++.+++++|++. +..|.||||+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV-NCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTT-TCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCC-Ccccc-ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 456788999999999999999999986542 14444 46789999999999999999999964 5678999999
Q ss_pred HHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 160 AAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 160 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
|+..|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|+++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999863
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.5e-23 Score=152.31 Aligned_cols=118 Identities=22% Similarity=0.182 Sum_probs=106.5
Q ss_pred CCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc--------CCCCCcHHH
Q psy4236 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF--------SSRGQTALH 158 (208)
Q Consensus 87 ~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~--------~~~~~t~l~ 158 (208)
.+..|.||||+|+..|+.+++++|++.|++ ++.. +..|+||||+|+..|+.+++++|++. +..|.||||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence 456789999999999999999999999988 7777 47899999999999999999999965 567999999
Q ss_pred HHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 159 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+|+..|+.+++++|++.|++++..|..|.||+++|+..+..++++.|++
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~ 194 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG 194 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988764
No 93
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=3.1e-23 Score=150.59 Aligned_cols=134 Identities=25% Similarity=0.271 Sum_probs=97.2
Q ss_pred HHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 22 IINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 22 ~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
+...+..+.||||.|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------------~~~~~~g~t~L~~A~~~ 116 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-----------------------------NGLDKAGSTALYWACHG 116 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------------TCCCTTSCCHHHHHHHT
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCc-----------------------------cccCCCCCCHHHHHHHc
Confidence 4455667889999999999999999976665554 55677888999999999
Q ss_pred CCHHHHHHHHHc-CCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHH
Q psy4236 102 GHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLV 173 (208)
Q Consensus 102 g~~~~~~~ll~~-g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll 173 (208)
|+.+++++|++. |++ ++.. +..|+||||+|+..|+.+++++|++. +..|.||||+|+..+..++++.|+
T Consensus 117 ~~~~~v~~Ll~~~g~~--~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~ 193 (222)
T 3ehr_A 117 GHKDIVEMLFTQPNIE--LNQQ-NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ 193 (222)
T ss_dssp TCHHHHHHHTTSTTCC--CCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---
T ss_pred CCHHHHHHHHcCCCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHh
Confidence 999999999888 777 7777 47788999999999999999888854 567889999999999999999999
Q ss_pred hCCCCCcccCCCCC
Q psy4236 174 AGGASLTVKDYDSN 187 (208)
Q Consensus 174 ~~g~~~~~~~~~g~ 187 (208)
..|++....+..++
T Consensus 194 ~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 194 GTDAVRTLSNAEDY 207 (222)
T ss_dssp --------------
T ss_pred ccchhhhccchhhh
Confidence 99988887776553
No 94
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.89 E-value=2.2e-22 Score=138.18 Aligned_cols=115 Identities=23% Similarity=0.251 Sum_probs=104.1
Q ss_pred CccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhh
Q psy4236 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMF 163 (208)
Q Consensus 91 g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~ 163 (208)
+.+|||.|+..|+.+++++|++. ....++.. +..|.||||+ +..|+.+++++|++. +..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 46899999999999999999998 32226666 4789999999 999999999999965 46789999999999
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 164 KRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 164 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
|+.+++++|++.|++++..|..|.||||+|+.+|+.+++++|++.
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999863
No 95
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=2.9e-21 Score=144.82 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=130.7
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHH--HHHHHHcCCC-CCcCCCCCccHHHHHHhc
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQ--LKDLHSQGYS-LLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~-~~~~d~~g~t~l~~a~~~ 101 (208)
.+..+.+.++.+...|+...-+++-..-.......+.... ......+. .+++...-.. ....+....++|+.|+..
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s-~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGS-DMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTC-CHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCC-CHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 4555677899999888887666543322222111111111 11111222 2233222111 111122345789999999
Q ss_pred CCHHHHHHHHHcCCCCc----cccCCCCCCccHHHHHHhh---CcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHH
Q psy4236 102 GHKDVVKYIIACAPSSI----LNMQDNDKGQTALHKAAMF---KRRSICWMFLFF-------SSRGQTALHKAAMFKRRS 167 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~----~~~~~~~~~~t~l~~a~~~---~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~ 167 (208)
|+.+.++.+++.|++.. ++.. +..|.||||+|+.. ++.+++++|++. +..|.||||+|+..|+.+
T Consensus 141 ~d~~~~~~ll~~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~ 219 (278)
T 1dcq_A 141 RDIFGLLQAYADGVDLTEKIPLANG-HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219 (278)
T ss_dssp TCHHHHHHHHHTTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred cccHHHHHHHHhhcchhhhcccccc-ccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence 99999999999998733 2222 36799999999999 899999999954 567999999999999999
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 168 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 220 ~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 259 (278)
T 1dcq_A 220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259 (278)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999985
No 96
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.88 E-value=1.3e-24 Score=169.05 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=127.3
Q ss_pred hHHHHHHHH-hCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCC---CcCCCCCccHHHHHHhc
Q psy4236 30 SEGVLKAAR-VGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSL---LSIDSVGQTALHYGSRY 101 (208)
Q Consensus 30 ~~~l~~A~~-~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~---~~~d~~g~t~l~~a~~~ 101 (208)
.++++.|.. .++.+.+++|+++|.+.. +|++ .+..+++++|+++|+.. +..+..|.||||+|+..
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~~~~-------T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~ 138 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGIKSE-------VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTCCHH-------HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCCcC-------CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence 457777776 588999999999987754 5543 56789999999998833 23445678999999999
Q ss_pred CCHHHHHHHHHcCCCCcc-ccCCCCCCccHHHHHHhhCcHHHHHHHHhcCC---------CCCcHHHHHH-hhCCHHHHH
Q psy4236 102 GHKDVVKYIIACAPSSIL-NMQDNDKGQTALHKAAMFKRRSICWMFLFFSS---------RGQTALHKAA-MFKRRSICC 170 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~---------~~~t~l~~A~-~~~~~~~~~ 170 (208)
|+.+++++|++.|++... +.. .. +.||||+|+..|+.+++++|++.+. .|.||||+|+ ..|+.++++
T Consensus 139 G~~eiv~~Ll~~gad~~~~~i~-~~-~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~ 216 (376)
T 2aja_A 139 GHLHVLNRLCELAPTEIMAMIQ-AE-NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 216 (376)
T ss_dssp TCHHHHHHHHHSCTTTHHHHHS-HH-HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CCHHHHHHHHhCCCCccccccC-CC-CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence 999999999999975211 111 12 2899999999999999999996543 3789999999 999999999
Q ss_pred HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 171 MLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 171 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
+|++.|++ |.||+++|+.+|+.+++++|++
T Consensus 217 ~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~ 246 (376)
T 2aja_A 217 FLLDCPVM-------LAYAEIHEFEYGEKYVNPFIAR 246 (376)
T ss_dssp HHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHH
T ss_pred HHHhCCCc-------cchHHHHHHHCCCHHHHHHHHh
Confidence 99997743 7899999999999999999975
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=5.6e-23 Score=138.25 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=66.1
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~ 100 (208)
.+..|.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|+++|++++.+|..|.||||+|+.
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence 3567889999999999999999988877776655444444432 233444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 143 (208)
.|+.+++++|++.|++ ++.. +..|.||+++|+..+..+++
T Consensus 86 ~~~~~~v~~Ll~~ga~--~~~~-~~~g~tpl~~A~~~~~~~~l 125 (137)
T 3c5r_A 86 NGHVDIVKLLLSYGAS--RNAV-NIFGLRPVDYTDDESMKSLL 125 (137)
T ss_dssp TTCHHHHHHHHHTTCC--TTCC-CTTSCCGGGGCCCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC--CCCC-CCCCCCHHHHHhhccHHHHH
Confidence 4444444444444444 3333 23444444444444333333
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=2.5e-22 Score=132.68 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=62.1
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
...+.++||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|+++|++++.+|..|+||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 345779999999999999999988887777665555544432 2334455555555555555555555555555555
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCCCccHHHHH
Q psy4236 102 GHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134 (208)
Q Consensus 102 g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a 134 (208)
|+.+++++|++.|++ ++.. +..|.||+++|
T Consensus 84 ~~~~~v~~Ll~~ga~--~~~~-~~~g~t~l~~A 113 (123)
T 3aaa_C 84 GHVSCVKLLLSKGAD--KTVK-GPDGLTAFEAT 113 (123)
T ss_dssp TCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHC
T ss_pred CCHHHHHHHHHcCCC--CCCc-CCCCCCHHHHh
Confidence 555555555555544 4333 24445555554
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=1.4e-20 Score=142.58 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=127.5
Q ss_pred chHHHHHHHHhCCHHHHHHHHHcCCCCc-ccCCCCCCCccchHHHHHHH-HHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236 29 TSEGVLKAARVGDIKMLKDLHSQGYSLK-KIPPKDDHPNLNHFFFQLKD-LHSQGYSLLSIDSVGQTALHYGSRYGHKDV 106 (208)
Q Consensus 29 ~~~~l~~A~~~g~~~~~~~Li~~g~~~~-~~~~~~~~~~~~~~~~~~~~-l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~ 106 (208)
..+.+..+...|+. .++.+.+...... ...+..... .......++. ..... .........++|+.|+..|+.+.
T Consensus 91 ~~~~l~~~~~~GN~-~~n~i~E~~l~~~~~~kP~~~s~-~~~r~~~I~~Ky~~~~--f~~~~~~~~~~L~~A~~~g~~~~ 166 (301)
T 2b0o_E 91 GPSELLLALNMGNT-SFNEVMEAQLPSHGGPKPSAESD-MGTRRDYIMAKYVEHR--FARRCTPEPQRLWTAICNRDLLS 166 (301)
T ss_dssp CHHHHHHHHHCCHH-HHHHHHTTTCCSSSCSCCCTTCC-HHHHHHHHHHHHTSCT--TSCCCC-CHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHcCCH-HHHHHHHHhhhhccCCCCCCccc-HHHHHHHHHHHHHhhh--hhcccCchHHHHhhhhhccCHHH
Confidence 44577777777765 6666677655432 111111111 1111122111 11111 12222335578999999999999
Q ss_pred HHHHHHcCCCCccccC-----CCCCCccHHHHHHhh---CcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHH
Q psy4236 107 VKYIIACAPSSILNMQ-----DNDKGQTALHKAAMF---KRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCM 171 (208)
Q Consensus 107 ~~~ll~~g~~~~~~~~-----~~~~~~t~l~~a~~~---~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~ 171 (208)
++.+++.|++ ++.. .+..|.||||+|+.. ++.+++++|++. +..|.||||+|+..|+.+++++
T Consensus 167 v~~ll~~g~d--~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~ 244 (301)
T 2b0o_E 167 VLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 244 (301)
T ss_dssp HHHHHHTTCC--TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCCc--ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999988 6551 246799999999997 899999999954 5679999999999999999999
Q ss_pred HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhh
Q psy4236 172 LVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207 (208)
Q Consensus 172 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~ 207 (208)
|+++|++++.+|..|.|||++|+..|+.+++++|++
T Consensus 245 Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~ 280 (301)
T 2b0o_E 245 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280 (301)
T ss_dssp HHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999985
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=5.9e-23 Score=144.88 Aligned_cols=110 Identities=24% Similarity=0.196 Sum_probs=99.9
Q ss_pred CCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------C-CCCCcHHHH
Q psy4236 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------S-SRGQTALHK 159 (208)
Q Consensus 88 d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~-~~~~t~l~~ 159 (208)
+..|.||||+|+..|+.+++++|++ |++ ++.. +..|+||||+|+..|+.+++++|++. + ..|.||||+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD--VDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC--CCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 4578999999999999999999999 877 7777 47899999999999999999999954 3 678999999
Q ss_pred HHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHH
Q psy4236 160 AAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTEL 201 (208)
Q Consensus 160 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~ 201 (208)
|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~ 158 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc
Confidence 999999999999999999999999999999999998765443
No 101
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=1.7e-21 Score=151.17 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=90.1
Q ss_pred chHHHHHHHHh-CCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCC--CCCccHHHHHHhcCCHH
Q psy4236 29 TSEGVLKAARV-GDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSID--SVGQTALHYGSRYGHKD 105 (208)
Q Consensus 29 ~~~~l~~A~~~-g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d--~~g~t~l~~a~~~g~~~ 105 (208)
+.++||.|+.. |+.++++.|+++|++++ ..+ ..|.||||+|+..|+.+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-----------------------------~~~~~~~g~TpLh~Aa~~g~~~ 249 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVN-----------------------------WVNGGQDNATPLIQATAANSLL 249 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTT-----------------------------CCCTTTTCCCHHHHHHHTTCHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCC-----------------------------ccccccCCCCHHHHHHHCCCHH
Confidence 45689999998 99999999777666654 344 67889999999999999
Q ss_pred HHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCC--
Q psy4236 106 VVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGG-- 176 (208)
Q Consensus 106 ~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g-- 176 (208)
++++|++.|++ ++.. +..|+||||+|+..++.+++++|++. +..|.||||+|+..++.+++++|+..+
T Consensus 250 iv~~LL~~Gad--vn~~-d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 250 ACEFLLQNGAN--VNQA-DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCC--CCCC-CCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 99999999988 7776 36788888888887777777777743 455777777777777777777777644
Q ss_pred -CCCcccCCCCCCHHHHHHHc
Q psy4236 177 -ASLTVKDYDSNTPRALALLA 196 (208)
Q Consensus 177 -~~~~~~~~~g~t~l~~a~~~ 196 (208)
.+....+..+.|+++.+...
T Consensus 327 ~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 327 EAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp ---------------------
T ss_pred cccccccCCCCCCHHHHHHHH
Confidence 33334445556666655443
No 102
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=2.2e-22 Score=142.32 Aligned_cols=119 Identities=14% Similarity=0.009 Sum_probs=91.6
Q ss_pred hhchHHHHHHHHhCCH----HHHHHHHHcCCCCcccCCCCCCCccch----------HHHHHHHHHHcCCCCCcCCCCCc
Q psy4236 27 EKTSEGVLKAARVGDI----KMLKDLHSQGYSLKKIPPKDDHPNLNH----------FFFQLKDLHSQGYSLLSIDSVGQ 92 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~----~~~~~Li~~g~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~g~~~~~~d~~g~ 92 (208)
..|.||||.|+..|+. +++++|+++|+++|.++..|.+|++.. ..+++++|+++|++++.+|..|.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 5688999999999985 489999888888888888888886521 25678888888888888888888
Q ss_pred -cHHHHHHhcCC-----HHHHHHHHH-cCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHh
Q psy4236 93 -TALHYGSRYGH-----KDVVKYIIA-CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF 148 (208)
Q Consensus 93 -t~l~~a~~~g~-----~~~~~~ll~-~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~ 148 (208)
||||+|+..+. .+++++|++ .|++ ++.+ +..|+||||+|+..++.+++++|.+
T Consensus 116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad--~~~~-d~~G~TpL~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ--LLIK-DKWGLTALEFVKRCQKPIALKMMED 175 (186)
T ss_dssp BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC--TTCC-CTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred chHHHHHHHcCCChhhHHHHHHHHHHhcCCC--Cccc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 88888877443 457788887 7877 6666 4677788888877777777777663
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=1.7e-21 Score=157.19 Aligned_cols=126 Identities=20% Similarity=0.208 Sum_probs=90.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh---cCCHHHH
Q psy4236 31 EGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR---YGHKDVV 107 (208)
Q Consensus 31 ~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~---~g~~~~~ 107 (208)
+.|+.|+..|+.+.++.|+++|+++|.... ....|..|.||||+|+. .|+.+++
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~-----------------------~~~~~~~g~t~Lh~A~~~a~~g~~~~v 190 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLP-----------------------GPDAQAPEELVLHLAVKVANQASLPLV 190 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBC-----------------------CSSSCCSCBCHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCC-----------------------CcccccccchHHHHHHHhcccccHHHH
Confidence 579999999999999999999888875411 11235667777777755 6777777
Q ss_pred HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCCc
Q psy4236 108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLT 180 (208)
Q Consensus 108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 180 (208)
++|++.|++ ++.. +..|+||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|+++|++++
T Consensus 191 ~~Ll~~ga~--vn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 191 DFIIQNGGH--LDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp HHHHHHSCC--TTCC-CSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred HHHHHcCCC--CCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 777777777 6666 36677777777777777777777744 4567777777777777777777777777777
Q ss_pred cc
Q psy4236 181 VK 182 (208)
Q Consensus 181 ~~ 182 (208)
..
T Consensus 268 ~~ 269 (497)
T 3lvq_E 268 AF 269 (497)
T ss_dssp --
T ss_pred CC
Confidence 53
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=7.4e-21 Score=119.38 Aligned_cols=90 Identities=32% Similarity=0.485 Sum_probs=71.1
Q ss_pred CCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhCCHHHH
Q psy4236 90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSIC 169 (208)
Q Consensus 90 ~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~~~~~~ 169 (208)
.|+||||+|+..|+.+++++|++.|++ ++.++ .. |.||||+|+..|+.+++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~n~~d-~~--------------------------g~t~L~~A~~~~~~~~v 51 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKD-KN--------------------------GRTPLHLAARNGHLEVV 51 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC--TTCCC-TT--------------------------SCCHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccC-CC--------------------------CCCHHHHHHHcCCHHHH
Confidence 378899999999999999999998887 65552 34 45555566666777788
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 170 CMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 170 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
++|++.|++++.+|..|.||+|+|+..|+.+++++|+++
T Consensus 52 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 52 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90 (93)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 888888899999998999999999999999999988763
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.9e-20 Score=140.38 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=107.7
Q ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc---CCHHH
Q psy4236 30 SEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY---GHKDV 106 (208)
Q Consensus 30 ~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~---g~~~~ 106 (208)
.++|+.|+..|+.+.++.+++.|++++... .++..|..|.||||+|+.. |+.++
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~-----------------------~l~~~~~~g~t~Lh~A~~~~~~~~~~~ 187 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI-----------------------PLANGHEPDETALHLAVRSVDRTSLHI 187 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC-----------------------CCSSCSSTTCBHHHHHHHHCCTTTHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhc-----------------------cccccccCCCCcchHHHHhcccchHHH
Confidence 358999999999999999999998875421 1345577899999999999 89999
Q ss_pred HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHHHHHhhCCHHHHHHHHhCCCCC
Q psy4236 107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL 179 (208)
Q Consensus 107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~~A~~~~~~~~~~~Ll~~g~~~ 179 (208)
+++|++.|++ ++.+ +..|+||||+|+..|+.+++++|++. +..|.||||+|+..|+.+++++|+++|++.
T Consensus 188 v~~Ll~~ga~--in~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 188 VDFLVQNSGN--LDKQ-TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHCSC--TTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCC--cccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999998 8877 47899999999999999999999954 567999999999999999999999988864
Q ss_pred c
Q psy4236 180 T 180 (208)
Q Consensus 180 ~ 180 (208)
.
T Consensus 265 ~ 265 (278)
T 1dcq_A 265 F 265 (278)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=1.8e-20 Score=117.57 Aligned_cols=90 Identities=29% Similarity=0.404 Sum_probs=72.1
Q ss_pred hchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHH
Q psy4236 28 KTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV 107 (208)
Q Consensus 28 ~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~ 107 (208)
.|.||||.|+..|+.+++++|+++|+ +++.+|..|+||||+|+..|+.+++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------------------------~~n~~d~~g~t~L~~A~~~~~~~~v 51 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGA-----------------------------DVNAKDKNGRTPLHLAARNGHLEVV 51 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC-----------------------------CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCC-----------------------------CCcccCCCCCCHHHHHHHcCCHHHH
Confidence 36799999999999999999766555 4456788899999999999999999
Q ss_pred HHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236 108 KYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149 (208)
Q Consensus 108 ~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~ 149 (208)
++|++.|++ ++.+ +..|+||||+|+..++.+++++|++.
T Consensus 52 ~~Ll~~ga~--~~~~-d~~g~t~l~~A~~~~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 52 KLLLEAGAD--VNAK-DKNGRTPLHLAARNGHLEVVKLLLEA 90 (93)
T ss_dssp HHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCC--CCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999988 7766 36677777777777776666666554
No 107
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=5.3e-21 Score=140.84 Aligned_cols=115 Identities=23% Similarity=0.215 Sum_probs=98.9
Q ss_pred CCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------C-CCCCcHHHHH
Q psy4236 89 SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------S-SRGQTALHKA 160 (208)
Q Consensus 89 ~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~-~~~~t~l~~A 160 (208)
..|.||||+|+..|+.+++++|++ |++ ++.. +..|+||||+|+..|+.+++++|++. + ..|.||||+|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD--VDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC--TTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC--CCCc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 467899999999999999999998 777 7777 47799999999999999999999854 3 5688999999
Q ss_pred HhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHH----------------HcCCHHHHHHHhh
Q psy4236 161 AMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL----------------LANDTELAAYLEK 207 (208)
Q Consensus 161 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~----------------~~~~~~~~~~L~~ 207 (208)
+..|+.+++++|+++|++++..|..|.||+|+|+ ..|+.+++++|.+
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHH
Confidence 9999999999999999999999999998888887 6688889988864
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=1.1e-19 Score=146.57 Aligned_cols=116 Identities=18% Similarity=0.142 Sum_probs=105.2
Q ss_pred CccHHHHHHhcCCHHHHHHHHHcCCCCccccC-----CCCCCccHHHHHHh---hCcHHHHHHHHhc-------CCCCCc
Q psy4236 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQ-----DNDKGQTALHKAAM---FKRRSICWMFLFF-------SSRGQT 155 (208)
Q Consensus 91 g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~-----~~~~~~t~l~~a~~---~~~~~~~~~l~~~-------~~~~~t 155 (208)
..+.||.|+..|+.+.++.|++.|++ ++.. .+..|.||||+|+. .|+.+++++|++. +..|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~--~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCC--SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhccc--ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCc
Confidence 44789999999999999999999988 5543 13679999999976 8999999999954 577999
Q ss_pred HHHHHHhhCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHhhC
Q psy4236 156 ALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208 (208)
Q Consensus 156 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~ 208 (208)
|||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 262 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 262 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999863
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=8.2e-21 Score=123.80 Aligned_cols=102 Identities=27% Similarity=0.337 Sum_probs=91.9
Q ss_pred cCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc-------CCCCCcHHH
Q psy4236 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALH 158 (208)
Q Consensus 86 ~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-------~~~~~t~l~ 158 (208)
.+|..|.||||+|+..|+.+++++|++.|++ ++.. +..|.||||+|+..++.+++++|++. +..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--SSCC-CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 5788999999999999999999999999988 7777 47899999999999999999999854 567999999
Q ss_pred HHHhhCCHHHHHHHHhCCCCCcccCCCCCCHH
Q psy4236 159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190 (208)
Q Consensus 159 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 190 (208)
+|+..++.+++++|+++|++++..+..|.+|-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999998875
No 110
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=1.3e-18 Score=112.51 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=75.5
Q ss_pred CcCCCCCccHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhcCCCCCcHHHHHHhhC
Q psy4236 85 LSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFK 164 (208)
Q Consensus 85 ~~~d~~g~t~l~~a~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~t~l~~A~~~~ 164 (208)
...|..|.||||+|+..|+.+++++|++.|++ ++..+ .. |.||||+|+..|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--i~~~d-~~--------------------------g~tpLh~A~~~~ 68 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD--VAAKD-KN--------------------------GSTPLHLAARNG 68 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCC-TT--------------------------CCCHHHHHHHTT
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCC--CCccC-CC--------------------------CCCHHHHHHHcC
Confidence 45677899999999999999999999999877 65542 33 555666666777
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q psy4236 165 RRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205 (208)
Q Consensus 165 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L 205 (208)
+.+++++|+++|++++..|..|.||+|+|+.+|+.+++++|
T Consensus 69 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 69 HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 78888899999999999999999999999999999999987
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=3.3e-19 Score=116.11 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=55.8
Q ss_pred hhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCcc----chHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhc
Q psy4236 26 LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNL----NHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRY 101 (208)
Q Consensus 26 ~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~ 101 (208)
+..|.||||.|+..|+.+++++|+++|++++..+..+.++++ .+..+++++|+++|++++.+|..|.||||+|+..
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~ 85 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKN 85 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHC
Confidence 567889999999999999999988877776655544444432 2234444444444444444444444444444444
Q ss_pred CCHHHHHHHHHcCCC
Q psy4236 102 GHKDVVKYIIACAPS 116 (208)
Q Consensus 102 g~~~~~~~ll~~g~~ 116 (208)
|+.+++++|++.|++
T Consensus 86 ~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 86 GHHEIVKLLDAKGAD 100 (115)
T ss_dssp TCHHHHHHHHTTSSS
T ss_pred CCHHHHHHHHHcCCC
Confidence 444444444444444
No 112
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=3.8e-18 Score=110.31 Aligned_cols=94 Identities=23% Similarity=0.331 Sum_probs=78.4
Q ss_pred hHHHhhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHh
Q psy4236 21 DIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSR 100 (208)
Q Consensus 21 ~~~~~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~ 100 (208)
...+.+.++.++||.|+..|+.+++++|+++|++ ++.+|..|.||||+|+.
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------------------------i~~~d~~g~tpLh~A~~ 66 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-----------------------------VAAKDKNGSTPLHLAAR 66 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTCCCHHHHHHH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-----------------------------CCccCCCCCCHHHHHHH
Confidence 4556778899999999999999999997665554 45678889999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHH
Q psy4236 101 YGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146 (208)
Q Consensus 101 ~g~~~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l 146 (208)
.|+.+++++|++.|++ ++.. +..|+||||+|+..++.+++++|
T Consensus 67 ~~~~~~v~~Ll~~ga~--~~~~-d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 67 NGHLEVVKLLLEAGAD--VXAQ-DKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TTCHHHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC--cccc-ccCCCcHHHHHHHcCCHHHHHHh
Confidence 9999999999999998 7777 47899999999999999998876
No 113
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.76 E-value=3.8e-18 Score=114.40 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=78.5
Q ss_pred hhhhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCH
Q psy4236 25 ILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHK 104 (208)
Q Consensus 25 ~~~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~ 104 (208)
.+..+.||||.|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.
T Consensus 43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------------~~~~d~~g~t~L~~A~~~~~~ 93 (136)
T 2jab_A 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGAD-----------------------------VNAVDAIGFTPLHLAAFIGHL 93 (136)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------------------------TTCCCTTCCCHHHHHHHHTCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------------------CCcCCCCCCCHHHHHHHcCCH
Confidence 345688999999999999999997666554 456788899999999999999
Q ss_pred HHHHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc
Q psy4236 105 DVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149 (208)
Q Consensus 105 ~~~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~ 149 (208)
+++++|++.|++ ++.. +..|+||||+|+..++.+++++|++.
T Consensus 94 ~~v~~Ll~~g~~--~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 94 EIAEVLLKHGAD--VNAQ-DKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHcCCC--CcCc-CCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 999999999988 7776 46788888888888888888887653
No 114
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.69 E-value=1.5e-16 Score=123.38 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=79.1
Q ss_pred hhchHHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHH
Q psy4236 27 EKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDV 106 (208)
Q Consensus 27 ~~~~~~l~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~ 106 (208)
..+.||||.|+..|+.+++++|+++|+ +++..|..|+||||+|+..|+.++
T Consensus 233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Ga-----------------------------dvn~~d~~G~TpLh~A~~~g~~~~ 283 (368)
T 3jue_A 233 QDNATPLIQATAANSLLACEFLLQNGA-----------------------------NVNQADSAGRGPLHHATILGHTGL 283 (368)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------CTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHcCC-----------------------------CCCCCCCCCCCHHHHHHHcCcHHH
Confidence 567899999999999999999766555 455678889999999999999999
Q ss_pred HHHHHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHHhc----------CCCCCcHHHHHHhh
Q psy4236 107 VKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF----------SSRGQTALHKAAMF 163 (208)
Q Consensus 107 ~~~ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~----------~~~~~t~l~~A~~~ 163 (208)
+++|++.|++ ++.. +..|.||||+|+..++.+++++|+.. +..+.|++..+..+
T Consensus 284 v~~LL~~Gad--~~~~-d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 284 ACLFLKRGAD--LGAR-DSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHTTCC--TTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHHHCcCC--CCCc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 9999999988 7777 47899999999999999999998743 23355666555443
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=68.80 E-value=3.8 Score=19.96 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.7
Q ss_pred HHHHHHHhCCHHHHHHHHH
Q psy4236 32 GVLKAARVGDIKMLKDLHS 50 (208)
Q Consensus 32 ~l~~A~~~g~~~~~~~Li~ 50 (208)
.+..||..|+++.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 7899999999999998744
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=54.96 E-value=12 Score=25.54 Aligned_cols=50 Identities=8% Similarity=-0.083 Sum_probs=28.3
Q ss_pred ccHHHHHHhhCcHHH-HHHHHhcCCCCCcHHHHHHhhCCHHHHHHHHh-CCCC
Q psy4236 128 QTALHKAAMFKRRSI-CWMFLFFSSRGQTALHKAAMFKRRSICCMLVA-GGAS 178 (208)
Q Consensus 128 ~t~l~~a~~~~~~~~-~~~l~~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~g~~ 178 (208)
+.+++.+...|+.+- ++.+.+.+ .-.-+...|..+|..++.+.+++ .|.+
T Consensus 93 n~af~~~l~lGdv~~~i~lL~~~~-r~~eA~~~A~t~g~~~~a~~~~~~~~~~ 144 (177)
T 3mkq_B 93 GSMLLNTFYNNSTKERSSIFAEGG-SLPLAYAVAKANGDEAAASAFLEQAEVD 144 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTT-CHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHCC-ChHHHHHHHHHcCcHHHHHHHHHHhCCc
Confidence 345566666666544 34443332 22234566777888888877775 5544
No 117
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=45.94 E-value=1.1e+02 Score=24.33 Aligned_cols=135 Identities=10% Similarity=-0.026 Sum_probs=69.6
Q ss_pred HHHHHHHhCCHHHHHHHHH----cCCCCcccC---------CCCC--CCc----cchHHHHHHHHHHcCCCCCcCCCCCc
Q psy4236 32 GVLKAARVGDIKMLKDLHS----QGYSLKKIP---------PKDD--HPN----LNHFFFQLKDLHSQGYSLLSIDSVGQ 92 (208)
Q Consensus 32 ~l~~A~~~g~~~~~~~Li~----~g~~~~~~~---------~~~~--~~~----~~~~~~~~~~l~~~g~~~~~~d~~g~ 92 (208)
.|...++.|+.+-+..+++ .|+.++... ..+. ... .....+++..+...|..+|.... .
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty--n 109 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF--T 109 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH--H
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH--H
Confidence 4555567888776666554 577776532 1111 011 12235567777788877654322 2
Q ss_pred cHHHHHHhcCCHHHHHH----HHHcCCCCccccCCCCCCccHHHHHHhhCcHHHHHHHH----hcCCCCC-----cHHHH
Q psy4236 93 TALHYGSRYGHKDVVKY----IIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL----FFSSRGQ-----TALHK 159 (208)
Q Consensus 93 t~l~~a~~~g~~~~~~~----ll~~g~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~----~~~~~~~-----t~l~~ 159 (208)
+.+...+..|..+-... +.+.|.. ++.. .-.+.+...+..|..+-+.-+. +.+.... +.+..
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~---tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLR---SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--Cccc---eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 45566678888665444 4445554 2221 1234455566677766655444 2222211 23344
Q ss_pred HHhhCCHHHHHHHH
Q psy4236 160 AAMFKRRSICCMLV 173 (208)
Q Consensus 160 A~~~~~~~~~~~Ll 173 (208)
.+..|+.+-+..++
T Consensus 185 ~~~~g~~d~A~~ll 198 (501)
T 4g26_A 185 SMDTKNADKVYKTL 198 (501)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HhhCCCHHHHHHHH
Confidence 45667766554444
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=44.16 E-value=33 Score=26.77 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=45.7
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCcccCCCCCCCccchHHHHHHHHHHcCCCCCcCCCCCccHHHHHHhcCCHHHHHHHHHc
Q psy4236 34 LKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC 113 (208)
Q Consensus 34 ~~A~~~g~~~~~~~Li~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~d~~g~t~l~~a~~~g~~~~~~~ll~~ 113 (208)
+..+..|+...|+.-+.+|.|++..-... ++ .+-++.+ . -..|.|.+|.|++..+.+++..|+..
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r~lt~~---------e~---~lln~~~--a-f~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIARQLTAD---------EV---RLLNRPS--A-FDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCCCCHH---------HH---HHHCCTT--T-CCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCCchhcccCHH---------HH---HHhCCCc--c-cccCchhhhhhhhhhhhhHHHHhhhc
Confidence 34467999999999999988876532211 11 1112222 2 35699999999999999999999873
No 119
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=25.80 E-value=2.4e+02 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHh
Q psy4236 184 YDSNTPRALALLANDTELAAYLE 206 (208)
Q Consensus 184 ~~g~t~l~~a~~~~~~~~~~~L~ 206 (208)
.-|.|.+|+|+...+.+++..|+
T Consensus 67 ~~g~tlvhlair~~r~~~l~~ll 89 (454)
T 3zrh_A 67 DVGYTLVHLAIRFQRQDMLAILL 89 (454)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHH
T ss_pred ccCchhhhhhhhhhhhhHHHHhh
Confidence 35788888888888888887775
Done!