RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4236
(208 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 76.7 bits (189), Expect = 4e-18
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
+ D G+T LH + GH +VVK ++ +N +DND G+T LH AA I +
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAKDND-GRTPLHLAAKNGHLEIVKL 58
Query: 146 FL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
L G T LH AA + +L+ GA + +D D TP LA
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118
Query: 199 TELAAYL 205
E+ L
Sbjct: 119 LEVVKLL 125
Score = 50.5 bits (121), Expect = 2e-08
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
+K L +G + + D G T LH +R G+ DVVK ++ + +N +D D G+T LH
Sbjct: 56 VKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH--GADVNARDKD-GRTPLHL 112
Query: 134 AAMFKRRSIC 143
AA +
Sbjct: 113 AAKNGHLEVV 122
Score = 32.4 bits (74), Expect = 0.062
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
G + + D G+T LH ++ GH +VVK ++
Sbjct: 96 GADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 55.8 bits (135), Expect = 2e-09
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKD--VVKYIIA--CAPSSILNMQDNDKGQT 129
L+ L G + ++D ++ LH+ + +V+ +I C P++ + G T
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT-----DMLGNT 224
Query: 130 ALHKAAMFK--RRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLT 180
LH A +RS+ L + GQT LH AA+F C L+A GA +
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284
Query: 181 VKDYDSNTPRALALLANDTE-LAAYLEK 207
D NTP +L + N+ + A L K
Sbjct: 285 AVSSDGNTPLSLMVRNNNGRAVRAALAK 312
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 49.4 bits (117), Expect = 2e-07
Identities = 39/198 (19%), Positives = 58/198 (29%), Gaps = 26/198 (13%)
Query: 34 LKAARVGDIKMLKDLHSQGYSLKKI-PPKDDHPNLNHFFFQLKDLHSQ-------GYSLL 85
L + +L SL P S+ L
Sbjct: 8 LLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLA 67
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
+ D G+ LH + G +VK ++A +N +D D G T LH AA+ +
Sbjct: 68 ARDLDGRLPLHSAASKGDDKIVKLLLASGAD--VNAKDAD-GDTPLHLAALNGNPPEGNI 124
Query: 146 FLF---------------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190
+ G T LH AA+ I +L+ GA ++ T
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTAL 184
Query: 191 ALALLANDTELAAYLEKS 208
A EL L
Sbjct: 185 DPAAKNGRIELVKLLLDK 202
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 46.9 bits (112), Expect = 2e-07
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 95 LHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL------- 147
LH ++ G+ ++VK ++ +N+ D D TALH AA I + L
Sbjct: 1 LHLAAKNGNLELVKLLLEKGAD--VNLGDTD---TALHLAARNGNLEIVKLLLEHGADVN 55
Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
G TALH AA I +L+ GA + +KD
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 39.2 bits (92), Expect = 1e-04
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 36 AARVGDIKMLKDLHSQGYSL---KKIPP-----KDDHPNLNHFFFQLKDLHSQGYSLLSI 87
AA+ G+++++K L +G + ++ + + +K L G + +
Sbjct: 4 AAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEI------VKLLLEHGADVNAK 57
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D G TALH +R G+ ++VK ++
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLL 81
Score = 35.3 bits (82), Expect = 0.003
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 131 LHKAAMFKRRSICWMFL-----FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
LH AA + + L TALH AA I +L+ GA + KD D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 186 SNTPRALALLANDTELAAYL 205
NT LA + E+ L
Sbjct: 61 GNTALHLAARNGNLEIVKLL 80
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 37.6 bits (88), Expect = 2e-04
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 93 TALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
TALH + G ++VKY++ +N D D G TALH AA + + L
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVD--INRTDED-GNTALHIAAENGNLEVLKLLL 54
Score = 35.7 bits (83), Expect = 0.001
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 155 TALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
TALHKAA+ R + L+ G + D D NT +A + E+ L
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 35.3 bits (82), Expect = 0.002
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
+K L +G + D G TALH + G+ +V+K ++
Sbjct: 17 VKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 31.8 bits (73), Expect = 0.026
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 129 TALHKAAMFKRRSIC-WMFLFF------SSRGQTALHKAAMFKRRSICCMLV 173
TALHKAA+ R + ++ G TALH AA + +L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 36.9 bits (86), Expect = 4e-04
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
G T LH AA + + L+ G L ++D D T LA
Sbjct: 15 NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 33.5 bits (77), Expect = 0.007
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 83 SLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
L + D G T LH ++YG ++V++++ LN++D+D G TAL A
Sbjct: 8 DLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVD-LNLRDSD-GLTALDLA 56
Score = 26.9 bits (60), Expect = 1.7
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 117 SILNMQDNDKGQTALHKAAMFKRRSICWMFLFF-------SSRGQTALHKA 160
I + G T LH AA + + L S G TAL A
Sbjct: 6 PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
G T LH AA + +L+ GA + +D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDN 124
G T LH +R GH +VVK ++ +N +D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGAD--VNARDK 33
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 36.1 bits (83), Expect = 0.010
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 26/189 (13%)
Query: 23 INILEKTSEGVLK-AARVGDIKMLKDLHSQGYSLKKIPPKDD------HPNLNHFFFQL- 74
+NI + + L A + GD++ +K L G + +DD H + H FF +
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYG---ADVNIEDDNGCYPIHIAIKHNFFDII 173
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
K L +G D+ G++ LH + YG +K +I + I+N N G T LH A
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKN--GFTPLHNA 230
Query: 135 AMFKRRSICWMFLFFSSR--------GQTALHKAAMFK-RRSICCMLVAGGASLTVKDYD 185
+ R +I L ++ G T LH A I +L+ A +++KD
Sbjct: 231 IIHNRSAIE---LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNK 287
Query: 186 SNTPRALAL 194
P A
Sbjct: 288 GENPIDTAF 296
Score = 33.4 bits (76), Expect = 0.080
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 17 KHYLDIINI-LEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLK 75
K+ + INI +++T+ ++ A R GD K+++ G + I K HP L
Sbjct: 22 KNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAH 81
Query: 76 DLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
D+ LL + V + L KD++K I+ C +N++D + +T LH A
Sbjct: 82 DI----IKLLIDNGVDTSILPIPCI--EKDMIKTILDCGID--VNIKDA-ELKTFLHYAI 132
Query: 136 MFKRRSICWMFLFFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNT 188
M + + G +H A I +L+ GA VKD + +
Sbjct: 133 KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES 192
Query: 189 P 189
P
Sbjct: 193 P 193
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 34.5 bits (79), Expect = 0.036
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 119 LNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCM 171
+NM+D KG TALH A K + + + L + + + LH A + I +
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219
Query: 172 LVAGGASLTVKDYDSNTP 189
L+ GAS +D NTP
Sbjct: 220 LLENGASTDARDKCGNTP 237
Score = 27.5 bits (61), Expect = 5.6
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 13/103 (12%)
Query: 91 GQTALHYGSRYGHKDVVKY-IIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
G TALHY + + + + + A +I + +N + LH A + I + L
Sbjct: 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNN----SPLHHAVKHYNKPIVHILLEN 223
Query: 150 -------SSRGQTALHKAAMF-KRRSICCMLVAGGASLTVKDY 184
G T LH + + K I +L+ G + K Y
Sbjct: 224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 34.1 bits (78), Expect = 0.053
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 16/127 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII--ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
DS G+T LH + G++D V ++ AC ++++D + G TAL A K I +
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACN----VHIRDAN-GNTALWNAISAKHHKIFRI 609
Query: 146 FLFFSS-----RGQTALHKAAMFKRRSICCM--LVAGGASLTVKDYDSNTPRALALLAND 198
F+S L AA KR + M L+ G ++ +D+ T +A+ +
Sbjct: 610 LYHFASISDPHAAGDLLCTAA--KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH 667
Query: 199 TELAAYL 205
++ L
Sbjct: 668 VDMVRLL 674
Score = 29.5 bits (66), Expect = 1.7
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
+K+L QG ++ S D G TAL H D+V+ +I D+D T L +
Sbjct: 638 MKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRE 697
Query: 134 AAMFKRRSI 142
+ ++R +
Sbjct: 698 --LLQKREL 704
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 33.7 bits (77), Expect = 0.056
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
G+T LH A + +L+ GA T+ D D TP LA E+ L
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 29.1 bits (66), Expect = 0.13
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 91 GQTALHYGSRYGHKDVVKYII 111
G+T LH + G+ +VVK ++
Sbjct: 2 GRTPLHLAAENGNLEVVKLLL 22
Score = 25.2 bits (56), Expect = 3.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTV 181
G+T LH AA + +L+ GA +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 28.8 bits (65), Expect = 0.19
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 91 GQTALHYGSRYGHKDVVKYII 111
G T LH +R G+ ++VK ++
Sbjct: 2 GNTPLHLAARNGNLELVKLLL 22
Score = 25.7 bits (57), Expect = 2.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASL 179
G T LH AA + +L+ GA +
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADI 28
Score = 24.9 bits (55), Expect = 5.0
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 126 KGQTALHKAAMFKRRSICWMFL 147
G T LH AA + + L
Sbjct: 1 DGNTPLHLAARNGNLELVKLLL 22
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 31.9 bits (72), Expect = 0.21
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 141 SICWMFL----FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL 194
+IC +L RG+T LHKA + ++S+ +L+ G+ + ++ + T A+A+
Sbjct: 436 NICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAI 493
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 31.6 bits (72), Expect = 0.28
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 23 INILEKTSEGVLKAARVG---DIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHS 79
+NI E +L D+K+LK L +G I K+ ++ L S
Sbjct: 134 VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGV---DINAKN----------RVNYLLS 180
Query: 80 QGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR 139
G + D G T LHY + + VKY++ + N+ N G T LH A +
Sbjct: 181 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL--GANPNLV-NKYGDTPLHIAILNNN 237
Query: 140 RSICWMFL 147
+ I + L
Sbjct: 238 KEIFKLLL 245
>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of
ephexin-1-like SH3 domain containing Rho guanine
nucleotide exchange factors. Members of this family
contain RhoGEF (also called Dbl-homologous or DH),
Pleckstrin Homology (PH), and C-terminal SH3 domains.
They include the Rho guanine nucleotide exchange
factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27
(also called ephexin-1), and similar proteins, and are
also called ephexins because they interact directly
with ephrin A receptors. GEFs interact with Rho GTPases
via their DH domains to catalyze nucleotide exchange by
stabilizing the nucleotide-free GTPase intermediate.
They play important roles in neuronal development. The
SH3 domains of ARHGEFs play an autoinhibitory role
through intramolecular interactions with a proline-rich
region N-terminal to the DH domain. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 55
Score = 28.1 bits (63), Expect = 0.59
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 21 DIINILEKTSEGVLKAARVGD 41
D++N+L K +G + R+ D
Sbjct: 22 DVVNVLRKMPDGWYEGERLRD 42
>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. NIPA
(nonimprinted in Prader-Willi/Angelman syndrome) is a
family of integral membrane proteins which function as
magnesium transporters.
Length = 300
Score = 29.4 bits (66), Expect = 1.3
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 82 YSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA 114
Y +L + V R+G +++ YI C+
Sbjct: 148 YVILVVGVVLILIFFVEPRHGQTNILVYITICS 180
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 29.2 bits (65), Expect = 1.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
F G T LH A + K+ I +L+A GA + + D +P LA++ D + L
Sbjct: 98 FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156
>gnl|CDD|200578 cd10954, CE4_CtAXE_like, Catalytic NodB homology domain of
Clostridium thermocellum acetylxylan esterase and its
bacterial homologs. This family is represented by
Clostridium thermocellum acetylxylan esterase (CtAXE, EC
3.1.1.72), a member of the carbohydrate esterase 4 (CE4)
superfamily. CtAXE deacetylates O-acetylated xylan, a
key component of plant cell walls. It shows no
detectable activity on generic esterase substrates
including para-nitrophenyl acetate. It is specific for
sugar-based substrates and will precipitate acetylxylan,
as a consequence of deacetylation. CtAXE is a monomeric
protein containing a catalytic NodB homology domain with
the same overall topology and a deformed (beta/alpha)8
barrel fold as other CE4 esterases. However, due to
differences in the topography of the substrate-binding
groove, the chemistry of the active center, and metal
ion coordination, CtAXE has different metal ion
preference and lacks activity on N-acetyl substrates. It
is significantly activated by Co2+. Moreover, CtAXE
displays distinctly different ligand coordination to the
metal ion, utilizing an aspartate, a histidine, and four
water molecules, as opposed to the conserved His-His-Asp
zinc-binding triad of other CE4 esterases.
Length = 180
Score = 28.7 bits (65), Expect = 1.8
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 16/63 (25%)
Query: 27 EKTSEGVLKAARVGDIKMLKDLHSQGY-SLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLL 85
EK VLK A+ GDI ++ D++ + + I P+ L +GY +
Sbjct: 131 EKIVSTVLKQAKDGDIILMHDIYPSTVEAAETIIPE---------------LKKRGYQFV 175
Query: 86 SID 88
++
Sbjct: 176 TVS 178
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 28.9 bits (65), Expect = 1.9
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 10 HVGLPSSKHYLDI--------INILEKTSEGVLKAARVGDI--KMLKDLHSQGYSLKKI- 58
LP +K+ + I I EK S G+ +G++ +L++L+ QG
Sbjct: 269 LSVLPRTKYDVLIDQESPNPGHQIFEKMSSGM----YLGELLRLILRNLYEQGLIFNGQD 324
Query: 59 PPKDDHP 65
P K P
Sbjct: 325 PEKLTDP 331
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 29.3 bits (65), Expect = 1.9
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM 136
L+ G+S+ SID T LH+ S+ + + + N KG+T L+ A
Sbjct: 259 LYDAGFSVNSIDDCKNTPLHHASQ--APSLSRLVPKLLERGADVNAKNIKGETPLYLMAK 316
Query: 137 --FKRRSICWMFLFFS------SRGQTALHKAAMFKR-RSICCMLVAGGASLTVKDYDSN 187
+ +I + + + T LH+A+ R + I L+ GA++ +DY
Sbjct: 317 NGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK 376
Query: 188 TPRALALLAND 198
TP A + N+
Sbjct: 377 TPIHYAAVRNN 387
>gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine
ligase/glutathione synthetase; Provisional.
Length = 752
Score = 28.7 bits (65), Expect = 2.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 34 LKAARVGDIKMLKDLHSQGYSLKKIPPKD 62
L+ ++G+I+ L L QG + IP K
Sbjct: 626 LEKIQLGEIERLM-LKQQGLTPDSIPKKG 653
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 28.5 bits (64), Expect = 2.9
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 129 TALHKAAMFKRRSICWMFLFFS----SRGQTALHKAAMFKRRSICCMLVAGGASLTVK 182
LH A F++ + + G TALH AA + I +L+ GAS+ +
Sbjct: 100 ILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR 157
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 27.1 bits (60), Expect = 4.9
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 149 FSSRGQTALHKAA---MFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDTELAAY 204
++ G+ +H + + +L+ GA + K+ NTP +A+ + ELA +
Sbjct: 51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATW 110
Query: 205 L 205
L
Sbjct: 111 L 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.396
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,371,960
Number of extensions: 944566
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 47
Length of query: 208
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 115
Effective length of database: 6,812,680
Effective search space: 783458200
Effective search space used: 783458200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)