RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4236
(208 letters)
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 82.2 bits (204), Expect = 1e-19
Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 19/133 (14%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIA----CAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
D G T LH G V + SIL + + G T LH A++ I
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN-GHTCLHLASIHGYLGIV 133
Query: 144 WMFLFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
+ + S G +TALH A + + +L+ GA + Y +P L
Sbjct: 134 ELLV---SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Query: 193 ALLANDTELAAYL 205
T + L
Sbjct: 191 TWGRPSTRIQQQL 203
Score = 73.4 bits (181), Expect = 3e-16
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 13/124 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+ G T LH S +G+ +V+ +++ A +N Q+ G+TALH A + +
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLV-SL 169
Query: 147 LF--------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
L + +G + I L +S + +
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229
Query: 199 TELA 202
TE
Sbjct: 230 TEFT 233
Score = 65.6 bits (161), Expect = 2e-13
Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+++ QT LH ++ + ++ ++D G T LH A + +
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCD--PELRDFR-GNTPLHLACEQGCLASVGVLT 98
Query: 148 -------------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALA 193
+ G T LH A++ I +LV+ GA + ++ + T LA
Sbjct: 99 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158
Query: 194 LLANDTELAAYL 205
+ + +L + L
Sbjct: 159 VDLQNPDLVSLL 170
Score = 60.3 bits (147), Expect = 2e-11
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 29/117 (24%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSS--ILNMQDNDKGQTALHKAAMFKRRSICWMFLF 148
G + LH + K + +I LN Q+N
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL----------------------- 44
Query: 149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
QT LH A + + I L+ G ++D+ NTP LA L
Sbjct: 45 ----QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 78.4 bits (194), Expect = 7e-18
Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 15/141 (10%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM 136
L + + G T LH + ++V+ + + LN + G+T LH A
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCGRTPLHLAVE 201
Query: 137 FKRRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
+ S+ + L G +T L A + + +L A GA D
Sbjct: 202 AQAASVLELLL---KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258
Query: 187 NTPRALALLANDTELAAYLEK 207
+P + + +D++ ++
Sbjct: 259 LSPCSSSGSDSDSDNRDEGDE 279
Score = 63.7 bits (156), Expect = 2e-12
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 28/116 (24%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
G TALH + H+ + +++ A L++Q++
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL------------------------ 44
Query: 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
GQTALH AA+ S L A GA + V + +T LA A L
Sbjct: 45 ---GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97
Score = 60.6 bits (148), Expect = 2e-11
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 26/140 (18%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAAMFKRRSIC--- 143
+ +GQTALH + G V+ + A A + + + G TALH A + +
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERG-GHTALHLACRVRAHTCACVL 97
Query: 144 --------------WMFLFFSSRGQT----ALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
++ T A + L ++YD
Sbjct: 98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157
Query: 186 SNTPRALALLANDTELAAYL 205
+TP +A++ D E+ L
Sbjct: 158 GHTPLHVAVIHKDAEMVRLL 177
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 77.5 bits (192), Expect = 4e-17
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 14/129 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ G T LH ++ GH V +I ++ G T LH A+ + + +
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVM--VDATTRM-GYTPLHVASHYGNIKL--VKF 329
Query: 148 FFSSR---------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
+ G + LH+AA I +L+ GAS D TP A+A
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389
Query: 199 TELAAYLEK 207
+ L+
Sbjct: 390 ISVTDVLKV 398
Score = 73.3 bits (181), Expect = 1e-15
Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
G T LH ++YG V + ++ A N + G T LH A I +
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKN-GLTPLHVAVHHNNLDIVKLL 198
Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
L RG T LH AA + + L+ G S + TP LA
Sbjct: 199 L---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255
Query: 197 NDTELAAYL 205
E+ A L
Sbjct: 256 GHAEMVALL 264
Score = 72.5 bits (179), Expect = 2e-15
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
QT LH +R GH ++VK ++ + N+ G T LH AA L
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNAN--PNLATTA-GHTPLHIAAREGHVETVLALL 133
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
+ +G T LH AA + + + +L+ A + TP +A+ N+ +
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 193
Query: 201 LAAYL 205
+ L
Sbjct: 194 IVKLL 198
Score = 72.5 bits (179), Expect = 3e-15
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
G T LH S GH +VK ++ S N+ + +T LH AA + L
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVK-VETPLHMAARAGHTEVAKYLL 67
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
+ QT LH AA ++ +L+ A+ + +TP +A E
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127
Query: 201 LAAYL 205
L
Sbjct: 128 TVLAL 132
Score = 72.5 bits (179), Expect = 3e-15
Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 79 SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK 138
+G S + +T LH +R GH +V KY++ +N + D QT LH AA
Sbjct: 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--VNAKAKD-DQTPLHCAARIG 91
Query: 139 RRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190
++ L ++ G T LH AA L+ AS TP
Sbjct: 92 HTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150
Query: 191 ALALLANDTELAAYL 205
+A +A L
Sbjct: 151 HVAAKYGKVRVAELL 165
Score = 67.9 bits (167), Expect = 1e-13
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
G T LH ++ GH ++V +++ A N+ + G T LH A + +
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQAN---GNLGNKS-GLTPLHLVAQEGHVPVADVL 297
Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
+ + G T LH A+ + + L+ A + K +P A T
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 200 ELAAYL 205
++ L
Sbjct: 358 DIVTLL 363
Score = 64.4 bits (158), Expect = 2e-12
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTAL 131
L G + + +G T LH S YG+ +VK+++ A +N + G + L
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-----VNAKTKL-GYSPL 348
Query: 132 HKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCML---VAGGASLTV 181
H+AA I + L SS G T L A S+ +L + + V
Sbjct: 349 HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408
Query: 182 KDYDSNTP 189
D +
Sbjct: 409 SDKHRMSF 416
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 74.0 bits (183), Expect = 6e-17
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 15/128 (11%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ R G+ V+ + + + N D+ G + LH A R ++ M +
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDH-GFSPLHWACREGRSAVVEMLI 59
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
RG T LH AA R I L+ A + + N P A
Sbjct: 60 ---MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116
Query: 198 DTELAAYL 205
++A L
Sbjct: 117 QDQVAEDL 124
Score = 69.0 bits (170), Expect = 4e-15
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G + LH+ R G VV+ +I +N+ + T LH AA R I L
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRG-DDTPLHLAASHGHRDIVQKLL 92
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
+ G LH A + + + LVA GA +++ + P A
Sbjct: 93 QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152
Query: 201 LAAYL 205
L
Sbjct: 153 LRERA 157
Score = 61.7 bits (151), Expect = 3e-12
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ T LH + +GH+D+V+ ++ +N + G LH A + + + +
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKAD--INAVNEH-GNVPLHYACFWGQDQVAEDLV 125
Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
+ G+ + KA R + G +L Y
Sbjct: 126 ---ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY 169
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 74.6 bits (184), Expect = 1e-16
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 24/143 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMF------- 137
++G+TALH + Y + + ++ + + + GQTALH A +
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-GQTALHIAVINQNVNLVR 92
Query: 138 -------------KRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
+ G+ L AA I +L+ GA + +D
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 185 DSNTPRALALLANDTELAAYLEK 207
NT + +L + A +
Sbjct: 153 LGNTVLHILILQPNKTFACQMYN 175
Score = 58.4 bits (142), Expect = 8e-11
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 26/115 (22%)
Query: 91 GQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW--- 144
G+ L + + G +++V+ +I A I QD+ G T LH + ++
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGA----DI-RAQDSL-GNTVLHILILQPNKTFACQMY 174
Query: 145 --------------MFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
+ L +++G T A + + L+ + +
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHH 229
Score = 53.8 bits (130), Expect = 4e-09
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 14/121 (11%)
Query: 90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
+ ++ L ++ + ++ + + + G+TALH AA++ + +
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAM-GETALHIAALYDNLEAAMVLMEA 59
Query: 150 ------------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
GQTALH A + + ++ L+A GAS++ + S L
Sbjct: 60 APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119
Query: 198 D 198
Sbjct: 120 Y 120
Score = 36.4 bits (85), Expect = 0.003
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 83 SLLSIDSVGQTALHYGSRYGHKDVVKYII 111
L ++ G T G+ + ++++
Sbjct: 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Score = 33.3 bits (77), Expect = 0.029
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 153 GQTALHKAAMFKRR-SICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
++ L AA ++ +L G + + T +A L ++ E A L
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL 56
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 74.1 bits (182), Expect = 1e-16
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 79 SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMF 137
+ D +TALH+ GH ++V++++ P +N +D+ G + LH AA
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDA-GWSPLHIAASA 83
Query: 138 KRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPR 190
I L + G T LH AA R I ML+ GGA+ KD+ T
Sbjct: 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 191 ALALLANDTELAAYL 205
A + ++ L
Sbjct: 144 HRAAAKGNLKMVHIL 158
Score = 66.8 bits (163), Expect = 8e-14
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
+ ++ + I+A + D D +TALH A I L
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSL---ATRTDQD-SRTALHWACSAGHTEIVEFLL-- 60
Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
G + LH AA I L+ GA + + + TP A N
Sbjct: 61 -QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 200 ELAAYL 205
E+A L
Sbjct: 120 EIAVML 125
Score = 62.6 bits (152), Expect = 3e-12
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G + LH + G ++VK ++ +N + + G T LH AA R I M L
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAH--VNAVNQN-GCTPLHYAASKNRHEIAVMLL 126
Query: 148 FFSS-------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
+ TA+H+AA + +L+ AS ++D + NTP LA E
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 201 LAAYL 205
A +L
Sbjct: 187 EAKFL 191
Score = 59.5 bits (144), Expect = 3e-11
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
+K L +G + +++ G T LHY + ++ ++ + + +D+ TA+H+
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN--PDAKDHY-DATAMHR 145
Query: 134 AAMFKRRSICWMFLFFSSR-------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
AA + + LF+ + G T LH A +R LV GAS+ +++ +
Sbjct: 146 AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205
Query: 187 NTPRALALLANDTELAAYL 205
TP L + L
Sbjct: 206 KTP--LQVAKGGLGLILKR 222
Score = 42.9 bits (101), Expect = 2e-05
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 121 MQDNDKGQTALHKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLV 173
M+ + A K + L +TALH A I L+
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 174 AGGASLTVKDYDSNTPRALALLANDTELAAYL 205
G + KD +P +A A E+ L
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 73.3 bits (181), Expect = 1e-16
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 18/130 (13%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+ S +T +R + + ++ ++ D + G+TAL A +
Sbjct: 40 VVSEYETPWWTAARKADEQALSQLLEDRD---VDAVDEN-GRTALLFVAGLGSDKCVRLL 95
Query: 147 LFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
G TALH AA + R + LV GA + V+D T LA
Sbjct: 96 A---EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
Query: 196 ANDTELAAYL 205
T
Sbjct: 153 ILKTTPKGNP 162
Score = 64.8 bits (159), Expect = 2e-13
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D G+TAL + + G V+ + A L+ +D G TALH AA + R +
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
+ G TAL A + + + G + ++
Sbjct: 130 V---ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 56.0 bits (136), Expect = 3e-10
Identities = 23/126 (18%), Positives = 31/126 (24%), Gaps = 15/126 (11%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-NDKGQTALHKAAMFKRRSICWMF 146
G + GH A D + +T AA
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAA-------DVVSEYETPWWTAARKADEQALSQL 63
Query: 147 L------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT 199
L G+TAL A +L GA L +D T +A
Sbjct: 64 LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123
Query: 200 ELAAYL 205
E+ L
Sbjct: 124 EVVEAL 129
Score = 37.5 bits (88), Expect = 0.001
Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 7/93 (7%)
Query: 118 ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-----SRGQTALHKAAMFKRRSICCML 172
I+ + +G W+ + S +T AA L
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPS-WVPSSYIAADVVSEYETPWWTAARKADEQALSQL 63
Query: 173 VAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+ + D + T + L
Sbjct: 64 LE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 95
Score = 26.7 bits (60), Expect = 3.9
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 16/38 (42%)
Query: 88 DSVGQTALHY----------------GSRYGHKDVVKY 109
D G TAL G R G + V+
Sbjct: 140 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV 177
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 73.8 bits (182), Expect = 2e-16
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 11/126 (8%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
LH ++ G+ ++ + +N D G TAL+ A + I M
Sbjct: 70 AESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKA-GSTALYWACHGGHKDIVEMLF 126
Query: 148 FFS--------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
G TALH AA I +L+A GA +++ + +A A
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA 186
Query: 200 ELAAYL 205
L
Sbjct: 187 SLLKKK 192
Score = 73.8 bits (182), Expect = 2e-16
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G TAL++ GHKD+V+ + + N Q+ G TALH AA I + L
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKL-GDTALHAAAWKGYADIVQLLL 160
Query: 148 -------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
+ + A A S+ A T+ + + +
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Score = 57.6 bits (140), Expect = 1e-10
Identities = 14/117 (11%), Positives = 25/117 (21%), Gaps = 5/117 (4%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKR--RSICWMFLF 148
GQ + + + + T K R
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGD--IIYITDM-SDTNWWKGTSKGRTGLIPSNYVAE 68
Query: 149 FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+ LH+AA S + + D +T A ++ L
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125
Score = 43.8 bits (104), Expect = 1e-05
Identities = 2/48 (4%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
+ + A + ++K ++ + + + +
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQ--GTDAVRTLSNAE-DYLDDEDSD 214
Score = 29.5 bits (67), Expect = 0.58
Identities = 8/50 (16%), Positives = 12/50 (24%)
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTEL 201
GQ + +A L + S+T T L
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 72.0 bits (178), Expect = 2e-16
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +G + LH ++YGH + ++ S + + +T LH AA +I + L
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVS--RDARTKV-DRTPLHMAASEGHANIVEVLL 87
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
G TALH A + + +L+ GA + + T +++
Sbjct: 88 ---KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144
Query: 198 DTELAAYLE 206
+ +LA L+
Sbjct: 145 NEDLAEILQ 153
Score = 64.3 bits (158), Expect = 1e-13
Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 19/126 (15%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
L +R G D V+ ++A A + G + LH AA + S + L
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGA-----PFTTDWLGTSPLHLAAQYGHFSTTEVLL-- 54
Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
G +T LH AA +I +L+ GA + KD T A N
Sbjct: 55 -RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 200 ELAAYL 205
E+ L
Sbjct: 114 EVVELL 119
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 70.9 bits (175), Expect = 3e-16
Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 12/128 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+ G+T LH S G V+Y++ + N++D+ G T LH+A + +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHA-GWTPLHEACNHGHLKVVELL 62
Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
L + + LH AA I +L++ GAS + P +
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122
Query: 200 ELAAYLEK 207
L EK
Sbjct: 123 SLLLLPEK 130
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 71.7 bits (177), Expect = 4e-16
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+S L ++ G + VK + + + T LH AA + R S+
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGR-QSTPLHFAAGYNRVSVVEYL 61
Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
L G LH A + + +LV GA + V D TP A
Sbjct: 62 L---QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118
Query: 197 NDTELAAYL 205
E+ L
Sbjct: 119 GKYEICKLL 127
Score = 68.2 bits (168), Expect = 7e-15
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+ T LH+ + Y VV+Y++ A ++ +D G LH A + + +
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKG-GLVPLHNACSYGHYEVAELL 94
Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
+ T LH+AA + IC +L+ GA T K+ D NTP L DT
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDT 153
Query: 200 ELAAYL 205
++ L
Sbjct: 154 DIQDLL 159
Score = 32.4 bits (75), Expect = 0.058
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
+ G T L + G D+ +
Sbjct: 138 NRDGNTPLDL-VKDGDTDIQDLLR 160
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 72.9 bits (180), Expect = 5e-16
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ G TALH ++ V+ ++ + ++ D G++ L A S+ + L
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
G +ALH A+ + LV GA ++K+ ++TP +A
Sbjct: 171 ---QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227
Query: 198 DTELAAYL 205
++
Sbjct: 228 VIDILRGK 235
Score = 70.2 bits (173), Expect = 5e-15
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 20/134 (14%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSS--ILNMQDNDKGQTALHKAAMFKRRSICWM 145
D G T LH G+ V ++ L++ +N QT LH A + S+ +
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRL 64
Query: 146 FLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTV----KDYDSNTPRA 191
+ + G QTA H A + + L+ A T+ ++YD T
Sbjct: 65 LV---TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 192 LALLANDTELAAYL 205
+A+ E L
Sbjct: 122 VAVNTECQETVQLL 135
Score = 58.6 bits (143), Expect = 7e-11
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
G++ L + +V+ ++ + +N Q G +ALH A+ + +
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGAN--VNAQMYS-GSSALHSASGRGLLPLVRTLV--R 204
Query: 151 ---------SRGQTALHKAAMFKRRSICCMLVAGGAS 178
T L A + I AS
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 38.2 bits (90), Expect = 0.001
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
+ T L D+++
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKA 236
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 72.5 bits (179), Expect = 6e-16
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 15/121 (12%)
Query: 79 SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAA 135
GY + D T LH+ + D+VKY I A I++ D T LH A
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-----IVDQLGGDLNSTPLHWAT 84
Query: 136 MFKRRSICWMFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNT 188
S+ + + G + +H AA F SI L+A G + + D + T
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144
Query: 189 P 189
P
Sbjct: 145 P 145
Score = 72.5 bits (179), Expect = 7e-16
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G + +H +++GH +V Y+IA ++M D + G T L AA L
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQD--VDMMDQN-GMTPLMWAAYRTHSVDPTRLL 162
Query: 148 FF---------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
TALH A + ++ +L+ GA++ ++ + LA +
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222
Query: 199 TELAAYL 205
+ +L
Sbjct: 223 VWMINHL 229
Score = 69.8 bits (172), Expect = 6e-15
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICW 144
ID + ++YG + + ++ + D + T LH AA+ R +
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYD---VRQPDKE-NVTLLHWAAINNRIDLVK 59
Query: 145 MFLFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
++ S+G T LH A S+ L+ GA ++ D + + LA
Sbjct: 60 YYI---SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116
Query: 194 LLANDTELAAYL 205
T + AYL
Sbjct: 117 AQFGHTSIVAYL 128
Score = 58.6 bits (143), Expect = 7e-11
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 88 DSVGQTALHYGSRYGH-KDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D G T L + + H D + ++ S +N+ D TALH A + ++ +
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLL 196
Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
L G++AL A K + L + +
Sbjct: 197 L---EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 39.3 bits (93), Expect = 4e-04
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
L G ++ + + G++AL + + ++ ++
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 73.7 bits (182), Expect = 6e-16
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D T LH + Y +V+ ++ A ++ +D G LH A + + +
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGAD---VHAKDKG-GLVPLHNACSYGHYEVTELL 110
Query: 147 L-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
L T LH+AA R +C +L++ GA T+ + + +A
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR 170
Query: 200 ELAAYL 205
E Y
Sbjct: 171 ERLTYE 176
Score = 61.7 bits (151), Expect = 1e-11
Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 17/142 (11%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGH-KDVVKYIIACAPSSILNMQDNDKGQTALHK 133
DL + + L +R G+ + ++ + + + D T LH
Sbjct: 8 LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN--CHASDGR-KSTPLHL 64
Query: 134 AAMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKD 183
AA + R I + L G LH A + + +L+ GA + D
Sbjct: 65 AAGYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 184 YDSNTPRALALLANDTELAAYL 205
TP A N E+ + L
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLL 143
Score = 59.0 bits (144), Expect = 1e-10
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 25/115 (21%)
Query: 91 GQTALHYGSRYGH---KDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
+TALH H K V + ++ +N ++ D T LH AA +
Sbjct: 211 HETALHCAVASLHPKRKQVAELLL-----RKGANVNEKNKD-FMTPLHVAAERAHNDVME 264
Query: 145 MFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
+ G QTALH+AA+ C +L++ G+ ++ T
Sbjct: 265 VLH---KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316
Score = 58.3 bits (142), Expect = 2e-10
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 30/144 (20%)
Query: 91 GQTALHYGSRYGHKDVVKY-------IIACAPS------------SILNMQDNDKGQTAL 131
G++A+ ++ + Y + A + I Q +TAL
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS-HETAL 215
Query: 132 HKAAM---FKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181
H A KR+ + + L + T LH AA + +L GA +
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275
Query: 182 KDYDSNTPRALALLANDTELAAYL 205
D T A LA + L
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLL 299
Score = 57.9 bits (141), Expect = 2e-10
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ T LH + H DV++ + + +N D+ GQTALH+AA+ C + L
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKH--GAKMNALDSL-GQTALHRAALAGHLQTCRLLL 300
Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
+ S +G TA +++ + D D
Sbjct: 301 SYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVD 340
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 70.1 bits (173), Expect = 1e-15
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 16/128 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
D G T L + + +G VV++++ A + ++AL A I
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----PQLLGKG-RESALSLACSKGYTDIVK 86
Query: 145 MFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
M L G T L A ML+ GA T++ LA+
Sbjct: 87 MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Query: 198 DTELAAYL 205
+ +
Sbjct: 147 YRSVQQVI 154
Score = 67.8 bits (167), Expect = 1e-14
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 16/125 (12%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
++H + G + I +N D + G T L AA + ++ L
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENV--INHTDEE-GFTPLMWAAAHGQIAVVEFLL--- 56
Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
G ++AL A I ML+ G + D++ TP A+ N +
Sbjct: 57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK 116
Query: 201 LAAYL 205
L
Sbjct: 117 CVKML 121
Score = 63.6 bits (156), Expect = 4e-13
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 16/108 (14%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
++AL G+ D+VK ++ C +N D + G T L A M L
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVD--VNEYDWN-GGTPLLYAVHGNHVKCVKMLL 122
Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
G ++ A RS+ ++ + L +
Sbjct: 123 ---ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 33.5 bits (78), Expect = 0.019
Identities = 7/54 (12%), Positives = 15/54 (27%)
Query: 152 RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
++H+ A + + D + TP A + +L
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 71.9 bits (177), Expect = 1e-15
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 18/130 (13%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+ S +T +R + + ++ ++ D + G+TAL A +
Sbjct: 41 VVSEYETPWWTAARKADEQALSQLLEDRD---VDAVDEN-GRTALLFVAGLGSDKCVRLL 96
Query: 147 LFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
G TALH AA + R + LV GA + V+D T LA
Sbjct: 97 A---EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Query: 196 ANDTELAAYL 205
T
Sbjct: 154 ILKTTPKGNP 163
Score = 69.6 bits (171), Expect = 9e-15
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 20/131 (15%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D G+TAL + + G V+ + A L+ +D G TALH AA + R +
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
+ G TAL A + + + G + ++ +
Sbjct: 131 V---ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVF 184
Query: 197 NDTELAAYLEK 207
E+ +EK
Sbjct: 185 EYAEVDEIVEK 195
Score = 55.3 bits (134), Expect = 1e-09
Identities = 23/126 (18%), Positives = 31/126 (24%), Gaps = 15/126 (11%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-NDKGQTALHKAAMFKRRSICWMF 146
G + GH A D + +T AA
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAA-------DVVSEYETPWWTAARKADEQALSQL 64
Query: 147 L------FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT 199
L G+TAL A +L GA L +D T +A
Sbjct: 65 LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124
Query: 200 ELAAYL 205
E+ L
Sbjct: 125 EVVEAL 130
Score = 48.8 bits (117), Expect = 2e-07
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 7/99 (7%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G TAL + + + + +F+ + + +
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRI------GLEKVINVLEGQVFEYAEVDEI-V 193
Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
+G+ + + A KDY+
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED 232
Score = 38.0 bits (89), Expect = 0.001
Identities = 10/100 (10%), Positives = 25/100 (25%), Gaps = 12/100 (12%)
Query: 36 AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLSIDSVGQTAL 95
A + + G ++I + L F +++ ++ G+
Sbjct: 151 AREILKTTPKGNPMQFG---RRIGLEKVINVLEGQVF----EYAEVDEIVEKRGKGKDVE 203
Query: 96 HYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
+ D + +D + L A
Sbjct: 204 YLVRWKDGGDCEWVKGVHV--AEDVAKDYE---DGLEYAV 238
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 72.1 bits (178), Expect = 2e-15
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 15/125 (12%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
L + D+V+ ++ + +N Q+ + G T LH A R I + L
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLL--- 59
Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
G T AA+ + + ++ GA + D+ T A + +
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 201 LAAYL 205
+L
Sbjct: 120 ALKFL 124
Score = 67.5 bits (166), Expect = 7e-14
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 14/137 (10%)
Query: 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRR 140
+ G TAL + GH +V+K ++ + + N DN G+ AL A +
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNM-GRNALIHALLSSDD 195
Query: 141 SICWMFLFF-----------SSRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNT 188
S RG+T L A K + L+ + D D T
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255
Query: 189 PRALALLANDTELAAYL 205
LA+ ++A L
Sbjct: 256 ALLLAVELKLKKIAELL 272
Score = 62.9 bits (154), Expect = 4e-12
Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 23/139 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII-------ACAPSSILNMQDNDKGQTALHKAAMFKRR 140
D G TA + YG +K++ + + G TAL AA
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 141 SICWMFLFFSSRG----------QTALHKAAMFKRRSICC----MLVAGGASLTVKDYDS 186
+ + L G + AL A + S +L+ GA + V+
Sbjct: 162 EVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219
Query: 187 NTPRALALLANDTELAAYL 205
TP LA+ L L
Sbjct: 220 KTPLILAVEKKHLGLVQRL 238
Score = 60.9 bits (149), Expect = 2e-11
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 21/120 (17%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC---- 143
G T + G ++K ++ + +N D G TA +AA++ +
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFY-GFTAFMEAAVYGKVKALKFLY 125
Query: 144 -------------WMFLFFSSRGQTALHKAAMFKRRSICCMLVA-GGASLTVKDYDSNTP 189
G TAL AA + +L+ GA + D
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185
Score = 59.4 bits (145), Expect = 6e-11
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
G T LH + +D+V+ ++ A ++ + G T AA+ + +FL
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGAD---PVLRKKN-GATPFLLAAIAGSVKLLKLFL-- 92
Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
S+G TA +AA++ + L GA++ ++ L
Sbjct: 93 -SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 144
Score = 39.0 bits (92), Expect = 5e-04
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
DS G+TAL K + + +
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLC 273
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 70.9 bits (175), Expect = 2e-15
Identities = 32/129 (24%), Positives = 45/129 (34%), Gaps = 15/129 (11%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G T H G+ +VVK + LN N G T LH A K + +
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLI 127
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLV-AGGASLTVKDYDSNTPRALALLA 196
G Q LH+AA + +L G +++ +D TP AL
Sbjct: 128 ---ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 197 NDTELAAYL 205
+ A L
Sbjct: 185 GHGDAAVLL 193
Score = 68.2 bits (168), Expect = 2e-14
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 11/139 (7%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAA 135
LHS+ LL D G+ LH+ + ++ ++++ ++ + D+ G T H A
Sbjct: 22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIAC 80
Query: 136 MFKRRSICWMFLFFSS---------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
+ +G T LH A K + L+ GAS+ +KD +
Sbjct: 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 187 NTPRALALLANDTELAAYL 205
P A +L L
Sbjct: 141 QIPLHRAASVGSLKLIELL 159
Score = 59.8 bits (146), Expect = 2e-11
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 14/128 (10%)
Query: 90 VGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-- 147
+ LH V+ ++ PS + +D D G+ LH + F+ I L
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLL-LQKDQD-GRIPLHWSVSFQAHEITSFLLSK 58
Query: 148 --------FFSSRGQTALHKAAMFKRRSICCMLV--AGGASLTVKDYDSNTPRALALLAN 197
+ G T H A + L L T LA+
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118
Query: 198 DTELAAYL 205
E++ +L
Sbjct: 119 WFEVSQFL 126
Score = 53.2 bits (129), Expect = 6e-09
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
D G T L + GH D ++ + ++ DN G A A
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNK-GAKAEDVAL 216
Score = 28.2 bits (64), Expect = 1.7
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D+ G A ++ V K+ +
Sbjct: 205 DNKGAKAEDVAL---NEQVKKFFL 225
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 69.8 bits (172), Expect = 2e-15
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 15/125 (12%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
++H + G D +K + + + N D G T L A+ F L
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLV-NKPDER-GFTPLIWASAFGEIETVRFLL--- 56
Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
G ++AL A+ I +L+ + + D++ TP A+ N +
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116
Query: 201 LAAYL 205
L
Sbjct: 117 CVEAL 121
Score = 69.0 bits (170), Expect = 4e-15
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D G T L + S +G + V++++ A ++ + ++AL A+ I +
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKE-RESALSLASTGGYTDIVGLL 88
Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
L R G T L A L+A GA LT + TP LA+
Sbjct: 89 L---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 197 NDTELAAYL 205
++ +
Sbjct: 146 GYRKVQQVI 154
Score = 55.5 bits (135), Expect = 4e-10
Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 29/102 (28%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G T L Y R H V+ ++A L + +
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGAD--LTTEADS---------------------- 134
Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
G T + A R + ++ L + P
Sbjct: 135 -----GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 71.0 bits (175), Expect = 3e-15
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G+TALH +RY D K ++ + N+QDN G+T LH A + + + +
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNM-GRTPLHAAVSADAQGVFQILI 110
Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
+R G T L AA + L+ A + D + A N
Sbjct: 111 --RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 198 DTELAAYL 205
+ + A L
Sbjct: 169 NVDAAVVL 176
Score = 56.7 bits (138), Expect = 4e-10
Identities = 33/142 (23%), Positives = 46/142 (32%), Gaps = 35/142 (24%)
Query: 91 GQTALHYGSRYG-------------HKDVVKYII---ACAPSSILNMQDNDKGQTALHKA 134
G T L S G V+ I A S+ N D G+TALH A
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA----SLHNQTDRT-GETALHLA 64
Query: 135 AMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGAS-LTVKD 183
A + R L +T LH A + + +L+ A+ L +
Sbjct: 65 ARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 184 YDSNTPRALALLANDTELAAYL 205
+D TP LA + L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDL 143
Score = 56.3 bits (137), Expect = 5e-10
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 29/118 (24%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +G++ALH+ + + D ++ + +MQ+N
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGAN--KDMQNNR---------------------- 189
Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+T L AA +L+ A+ + D+ PR +A ++ L
Sbjct: 190 -----EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 45.9 bits (110), Expect = 2e-06
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 22/107 (20%)
Query: 120 NMQDNDKGQTALHKAAMFKRRSICWMFLFFSSR---------------------GQTALH 158
N++ D G T L A+ G+TALH
Sbjct: 4 NVRGPD-GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 159 KAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
AA + R L+ A ++D TP A+ A+ + L
Sbjct: 63 LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109
Score = 37.8 bits (89), Expect = 0.001
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D + + H D+V+ +
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLD 243
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 70.1 bits (173), Expect = 4e-15
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 22/131 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
D G T + + + Y H D+VK ++ S +N++DN+ LH AA I
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLL-----SKGSDINIRDNE-ENICLHWAAFSGCVDIAE 161
Query: 145 MFLFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL 194
+ L + G + LH AA R + ++ + +T+K+ + TP A
Sbjct: 162 ILL---AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Query: 195 LANDTELAAYL 205
L + A +
Sbjct: 219 LNSQVWSALQM 229
Score = 65.9 bits (162), Expect = 2e-13
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
++ LH + GH D+ ++ + ++ D +T L +AA +
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSED-QRTPLMEAAENNHLEAVKYLI 64
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLA 196
G T LH AA + L++ G + +D TP A
Sbjct: 65 ---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 197 NDTELAAYL 205
+L L
Sbjct: 122 KHVDLVKLL 130
Score = 59.7 bits (146), Expect = 3e-11
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAM 136
L S+G + D+ LH+ + G D+ + ++A L+ + G + LH AA
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD--LHAVNIH-GDSPLHIAAR 186
Query: 137 FKRRSICWMFLFFSSR----------GQTALHKAAMFKRRSICCMLVAGGA 177
R +FL SR G+T L A++ + +
Sbjct: 187 ENRYDCVVLFL---SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 69.4 bits (171), Expect = 9e-15
Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D G+TALH +RY D K ++ A N+QDN G+T LH A + +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNM-GRTPLHAAVSADAQGV--FQ 75
Query: 147 LFFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
+ +R G T L AA + L+ A + D + A
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 197 NDTELAAYL 205
N+ + A L
Sbjct: 136 NNVDAAVVL 144
Score = 56.3 bits (137), Expect = 4e-10
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +G++ALH+ + + D ++ + +MQ+N +T L AA + L
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGAN--KDMQNNR-EETPLFLAAREGSYETAKVLL 178
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGA 177
+ A I +L
Sbjct: 179 ---DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 49.3 bits (119), Expect = 1e-07
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 102 GHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRG----- 153
V+ I A S+ N D G+TALH AA + R L
Sbjct: 2 DAPAVISDFIYQGA----SLHNQTDRT-GETALHLAARYSRSDAAKRLL---EASADANI 53
Query: 154 -----QTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLANDTELAAYL 205
+T LH A + + +L+ A+ L + +D TP LA + L
Sbjct: 54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 67.8 bits (167), Expect = 2e-14
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 22/131 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
D G TAL + + + + ++ S +N +D G+T L + +F + +
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLL-----SKGSNVNTKDFS-GKTPLMWSIIFGYSEMSY 118
Query: 145 MFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALAL 194
L G +T L A+ + R I L+ GA ++ +D T A A
Sbjct: 119 FLL---EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
Query: 195 LANDTELAAYL 205
+ E+
Sbjct: 176 IFGRQEVIKIF 186
Score = 67.4 bits (166), Expect = 2e-14
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
DS +T L G ++ + ++ L +D + G TAL A R I
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFD---KLEDKDIE-GSTALIWAVKNNRLGIAEKL 87
Query: 147 LFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLA 196
L S+G +T L + +F + L+ GA++ ++ + TP +A
Sbjct: 88 L---SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
Query: 197 NDTELAAYL 205
+E+ L
Sbjct: 145 GRSEIVKKL 153
Score = 61.6 bits (151), Expect = 3e-12
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 22/130 (16%)
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
+D G+ + ++ N +D+ +T L A M +
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLR--------NYRDSY-NRTPLMVACMLGMENAIDK 53
Query: 146 FLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
+ TAL A R I L++ G+++ KD+ TP +++
Sbjct: 54 LV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110
Query: 196 ANDTELAAYL 205
+E++ +L
Sbjct: 111 FGYSEMSYFL 120
Score = 38.5 bits (91), Expect = 4e-04
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D G TA +G ++V+K
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIFT 187
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 68.7 bits (168), Expect = 2e-14
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSI-LNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
G+ L + DVV Y++ L D+ G T LH M
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL-GNTVLHALVMIAD---------- 184
Query: 150 SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+S +AL + L + ++ TP LA E+ ++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Score = 54.4 bits (131), Expect = 2e-09
Identities = 28/147 (19%), Positives = 43/147 (29%), Gaps = 34/147 (23%)
Query: 88 DSVGQTALHY---GSRYGHKDVVKYIIACA-----PSSILNMQDNDK---GQTALHKAAM 136
S G+T L + G + ++ P ++N Q D+ G +ALH A
Sbjct: 40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99
Query: 137 --------------------FKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGG 176
R G+ L AA K+ + L+
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159
Query: 177 ---ASLTVKDYDSNTPRALALLANDTE 200
ASL D NT ++ D
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIADNS 186
Score = 39.8 bits (93), Expect = 2e-04
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
L + G T L ++ G ++ ++I+
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
Score = 35.1 bits (81), Expect = 0.009
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 26/138 (18%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQD-----NDKGQTALHKAAMFKRR---SI 142
+ L G + + ++ + + D G+T L KA + + +
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 143 CWMFLFFSS------------------RGQTALHKAAMFKRRSICCMLVAGGASLTVKDY 184
L +G +ALH A + +LV GA + ++
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 185 DSNTPRALALLANDTELA 202
+ EL
Sbjct: 122 GRFFQKHQGTCFYFGELP 139
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 65.9 bits (162), Expect = 2e-14
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
+ S+ + + G D VK +A +N G+ LH AA + I
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEG-GRKPLHYAADCGQLEILEF 58
Query: 146 FLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
L +G T L A S +L++ GA TVK D T
Sbjct: 59 LL---LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109
Score = 33.5 bits (78), Expect = 0.012
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 88 DSVGQTALHYGSRYGHKDVVK 108
G TA K +++
Sbjct: 103 GPDGLTAFEATDNQAIKALLQ 123
Score = 30.4 bits (70), Expect = 0.14
Identities = 8/53 (15%), Positives = 11/53 (20%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
A VA G + P A E+ +L
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 69.1 bits (170), Expect = 2e-14
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 19/130 (14%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
D G TAL+Y G+ VK + L +T+ + A M SI F
Sbjct: 92 DDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYF 148
Query: 147 LFFSSRG---------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL--ALL 195
L S + +H + +L+ S + P + A+
Sbjct: 149 L---SEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP-DIKLAID 204
Query: 196 ANDTELAAYL 205
D E+ L
Sbjct: 205 NKDIEMLQAL 214
Score = 64.9 bits (159), Expect = 6e-13
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 13/126 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D G +A +Y + +V ++ ++ N+ +N + LH+AA + I + L
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLEN---EFPLHQAATLEDTKIVKILL 82
Query: 148 F-------FSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT 199
F F +G TAL+ A + V L T A++ ND
Sbjct: 83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 142
Query: 200 ELAAYL 205
+ +Y
Sbjct: 143 SIVSYF 148
Score = 60.2 bits (147), Expect = 3e-11
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
++ + +H + GH D++ ++ S N ++ + A K +
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTS--TNTNNSLLFIPDIKLAIDNKDIEMLQALF 215
Query: 148 FFSSRG---QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
+A + + I M++ Y +
Sbjct: 216 ---KYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKN 261
Score = 43.3 bits (103), Expect = 2e-05
Identities = 7/52 (13%), Positives = 11/52 (21%), Gaps = 3/52 (5%)
Query: 84 LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
L D +A ++ K II + K
Sbjct: 214 LFKYDINIYSANLENVLLDDAEIAKMIIEKHVE--YKSDSYT-KDLDIVKNN 262
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 65.4 bits (161), Expect = 3e-14
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
G+T LH +R GH +VVK ++ A +N +D + G+T LH AA + + L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKN-GRTPLHLAARNGHLEVVKLLL-- 55
Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
G +T LH AA + +L+ GA + KD + TP LA
Sbjct: 56 -EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114
Query: 200 ELAAYL 205
E+ L
Sbjct: 115 EVVKLL 120
Score = 57.4 bits (140), Expect = 3e-11
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 22/103 (21%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
D G+T LH +R GH +VVK ++ +N +D + G+T LH AA +
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKN-GRTPLHLAARNGHLEVVK 85
Query: 145 MFLFFSSR----------GQTALHKAAMFKRRSICCMLVAGGA 177
+ L G+T LH AA + +L+ GA
Sbjct: 86 LLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 68.7 bits (169), Expect = 3e-14
Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 9/133 (6%)
Query: 79 SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK 138
SQG+++ I + + LH GH VK ++ + +N D T L A +
Sbjct: 80 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTAD-WHTPLFNACVSG 136
Query: 139 RRSICWMFLFF------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
+ L S + +H+AA L+A G ++ K TP L
Sbjct: 137 SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 196
Query: 193 ALLANDTELAAYL 205
A L
Sbjct: 197 ACENQQRACVKKL 209
Score = 67.9 bits (167), Expect = 6e-14
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 17/109 (15%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
+ +H +R GH + V +IA ++ + + T L+ A ++R+ L
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGN---IDHKISH-LGTPLYLACENQQRACVKKLL-- 210
Query: 150 SSRG---------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
G + LH + C+L+ GA K+ + P
Sbjct: 211 -ESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258
Score = 62.9 bits (154), Expect = 3e-12
Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 27/186 (14%)
Query: 36 AARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQGYSLLS----IDSV- 90
+ L +G + D G LLS D+V
Sbjct: 2 GSSHHHHHHSSGLVPRGSH---MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS 58
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
+ +H + +GH+ ++ +I+ +N+ D + LH+A + S + L
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWA---VNIITAD-HVSPLHEACLGGHLSCVKILL-- 112
Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
G T L A + +L+ GAS+ + D +P A
Sbjct: 113 -KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV 170
Query: 200 ELAAYL 205
E L
Sbjct: 171 ECVNSL 176
Score = 52.5 bits (127), Expect = 2e-08
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
S T L+ + VK ++ S ++ + LH + + +
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLL----ESGADVNQGKGQDSPLHAVVRTASEELACLLM 242
Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASL 179
F ++ G+ + + L GASL
Sbjct: 243 DFGADTQAKNAEGKRPVELVP-PESPLAQLFLEREGASL 280
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 65.5 bits (161), Expect = 4e-14
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
L +R G D V+ ++A A +N +D G T L+ A I + L
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGAD---VNAKDEY-GLTPLYLATAHGHLEIVEVLL-- 67
Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
G T LH AA I +L+ GA + +D T +++ +
Sbjct: 68 -KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 200 ELAAYL 205
+LA L
Sbjct: 127 DLAEIL 132
Score = 50.1 bits (121), Expect = 2e-08
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAA 135
D++G T LH + GH ++ + ++ A +N QD G+TA +
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGAD-----VNAQDKF-GKTAFDISI 121
Score = 38.9 bits (92), Expect = 2e-04
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 118 ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRS 167
+ +D L +AA + + + + G T L+ A
Sbjct: 6 HHHHHGSD-LGKKLLEAARAGQDDEVRILM---ANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
I +L+ GA + D TP LA E+A L
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Score = 38.1 bits (90), Expect = 3e-04
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D G+TA G++D+ + +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQ 133
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 68.8 bits (169), Expect = 4e-14
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 22/137 (16%)
Query: 88 DSVGQTALHYGSRYGHKD---VVKYIIA------CAPSSILNMQDNDKGQTALHKAAMFK 138
D G TAL + +D K ++ ++ + + G+TALH AA
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK-GRTALHYAAQVS 290
Query: 139 RRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNT 188
I + +G +T + AA R + L+ GAS+ D +T
Sbjct: 291 NMPIVKYLV--GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 348
Query: 189 PRALALLANDTELAAYL 205
R LA N +
Sbjct: 349 ARQLAQANNHHNIVDIF 365
Score = 68.4 bits (168), Expect = 5e-14
Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 20/146 (13%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
H+ + LH G + + I +N+ D +T LH
Sbjct: 78 DFNHTNLQIPTEPEPESPIKLHT-EAAGSYAITEPIT----RESVNIIDPRHNRTVLHWI 132
Query: 135 AMFKRRSICWMFLFFSSR---------------GQTALHKAAMFKRRSICCMLVAGGASL 179
A + ++ T L A + +RR + L+ GA
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192
Query: 180 TVKDYDSNTPRALALLANDTELAAYL 205
T+ + + A D + Y+
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYM 218
Score = 61.5 bits (150), Expect = 1e-11
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 23/118 (19%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSIL------NMQDNDKGQTALHKAAMFKRRSICW 144
+T LH+ + + + +I + N D D T L A + +RR +
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-ENTPLMLAVLARRRRLVA 183
Query: 145 MFLFFSSRG----------QTALHKAAMFKRRSICCMLV---AGGASLTVKDYDSNTP 189
+ G ++ALH+AA + + ++ + D + T
Sbjct: 184 YLM---KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238
Score = 61.1 bits (149), Expect = 2e-11
Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 24/136 (17%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+ G G+ + + I + + LH A +I
Sbjct: 57 LQHYSLYPNPQGYGNGNDFLGDFNHTNL--QIPTEPEPE-SPIKLHTEAA-GSYAITEPI 112
Query: 147 LFFSSRG---------QTALHKAAMFKRRSI--------CCMLVAGGASLTVKDYDSNTP 189
+T LH A +A GA + D D NTP
Sbjct: 113 T---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169
Query: 190 RALALLANDTELAAYL 205
LA+LA L AYL
Sbjct: 170 LMLAVLARRRRLVAYL 185
Score = 60.7 bits (148), Expect = 2e-11
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
G+TALHY ++ + +VKY++ S+ + QD D G+T + AA R + M+L
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDED-GKTPIMLAAQEGRIEVV-MYL 332
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGA 177
+G TA A +I +
Sbjct: 333 I--QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 60.0 bits (146), Expect = 5e-11
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 28/154 (18%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
K+ + G + ++D T L + +V Y++ + + + ++ALH+A
Sbjct: 150 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKS-ERSALHQA 206
Query: 135 AMFKRRSICWMFLFFSSR------------GQTALHKAAMFKRR---SICCMLVAGGA-- 177
A + + M +S G TAL A + R + +LV GA
Sbjct: 207 AANRDFGM--MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Query: 178 ------SLTVKDYDSNTPRALALLANDTELAAYL 205
+ Y T A ++ + YL
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298
Score = 37.6 bits (88), Expect = 0.001
Identities = 7/84 (8%), Positives = 16/84 (19%), Gaps = 3/84 (3%)
Query: 122 QDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181
Q Q +L +A+ + + T
Sbjct: 32 QSITSSQHSLLEASYDGYIKR--QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89
Query: 182 KDYDSNTPRALALLANDTELAAYL 205
+ +S A + +
Sbjct: 90 PEPESPIKLHTE-AAGSYAITEPI 112
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 66.2 bits (163), Expect = 5e-14
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D+ G T LH + GH ++V+ ++ +N D+ G T L AA+F I + L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGAD--VNAVDHA-GMTPLRLAALFGHLEIVEVLL 100
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
G T LH AAMF I +L+ GA + +D T +++
Sbjct: 101 ---KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Query: 198 DTELAAYL 205
+ +LA L
Sbjct: 158 NEDLAEIL 165
Score = 64.7 bits (159), Expect = 2e-13
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
L +R G D V+ ++A A +N +D G T LH AA I + L
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGAD---VNAEDAS-GWTPLHLAAFNGHLEIVEVLL-- 67
Query: 150 SSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
G T L AA+F I +L+ GA + D + +TP LA +
Sbjct: 68 -KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Query: 200 ELAAYL 205
E+ L
Sbjct: 127 EIVEVL 132
Score = 41.6 bits (99), Expect = 4e-05
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 118 ILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRS 167
+ +D L +AA R + + + G T LH AA
Sbjct: 6 HHHHHGSD-LGKKLLEAARAGRDDEVRILM---ANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 168 ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
I +L+ GA + D+ TP LA L E+ L
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Score = 38.9 bits (92), Expect = 3e-04
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D G+TA G++D+ + +
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQ 166
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 67.1 bits (165), Expect = 7e-14
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 79 SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFK 138
SQG+++ I + + LH GH VK ++ +N D T L A +
Sbjct: 24 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ--VNGVTAD-WHTPLFNACVSG 80
Query: 139 RRSICWMFLFF------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRAL 192
+ L S + +H+AA L+A G ++ K TP L
Sbjct: 81 SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Query: 193 ALLANDTELAAYL 205
A L
Sbjct: 141 ACENQQRACVKKL 153
Score = 66.7 bits (164), Expect = 1e-13
Identities = 12/125 (9%), Positives = 35/125 (28%), Gaps = 13/125 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
S T L+ + VK ++ S ++ + LH A + + +
Sbjct: 131 ISHLGTPLYLACENQQRACVKKLL----ESGADVNQGKGQDSPLHAVARTASEELACLLM 186
Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
F ++ G+ + + + + ++ R + +
Sbjct: 187 DFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHK 244
Query: 201 LAAYL 205
+ +
Sbjct: 245 ITKLV 249
Score = 59.8 bits (146), Expect = 4e-11
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL--- 147
+ +H + +GH+ ++ +I+ + +N+ D + LH+A + S + L
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWA--VNIITAD-HVSPLHEACLGGHLSCVKILLKHG 59
Query: 148 ----FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
++ T L A + +L+ GAS+ + D +P A E
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVN 118
Query: 204 YL 205
L
Sbjct: 119 SL 120
Score = 51.7 bits (125), Expect = 2e-08
Identities = 7/94 (7%), Positives = 26/94 (27%), Gaps = 12/94 (12%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF-- 148
+ LH +R +++ ++ ++ + G+ + + +FL
Sbjct: 166 QDSPLHAVARTASEELACLLMDFGAD--TQAKNAE-GKRPVELVP--PESPLAQLFLERE 220
Query: 149 -----FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
+ + I +++
Sbjct: 221 GPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 35.9 bits (84), Expect = 0.005
Identities = 2/24 (8%), Positives = 5/24 (20%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
H + K ++
Sbjct: 227 QLCRLRIRKCFGIQQHHKITKLVL 250
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 63.9 bits (157), Expect = 8e-14
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICWMFL 147
G T LH ++ GH + VK ++ S +N + D G T LH AA I + L
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL-----SKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLL 62
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
++G T H A I +L A GA + + + S+
Sbjct: 63 ---AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111
Score = 48.1 bits (116), Expect = 6e-08
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALH 132
G T H + GH ++VK + A +N + H
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWG-SSHHHH 113
Score = 37.7 bits (89), Expect = 4e-04
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 120 NMQDNDKGQTALHKAAMFKRRSICWMFL-------FFSSRGQTALHKAAMFKRRSICCML 172
D G T LH AA L S G T LH AA I +L
Sbjct: 3 MWGSKD-GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 173 VAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+A GA + + D NTP LA E+ L
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 68.0 bits (167), Expect = 9e-14
Identities = 16/141 (11%), Positives = 40/141 (28%), Gaps = 24/141 (17%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
D +T L + +++ + ++ PS L+ + G + LH A + +
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ-GNSHLHWAILINWEDVAM 228
Query: 145 MFLFF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN---------- 187
F+ + L+ + + L+ ++ +
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288
Query: 188 ---TPRALALLANDTELAAYL 205
A + E+ L
Sbjct: 289 VWLDFVPAAADPSKQEVLQLL 309
Score = 65.7 bits (161), Expect = 5e-13
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL-FF 149
GQ +H D+V ++ A ++GQ R + +
Sbjct: 84 GQKPIHLAVMANKTDLVVALVEGA---------KERGQMPESLLNECDEREVNEIGSHVK 134
Query: 150 SSRGQTALHKAAMFKRRS--ICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+GQTALH + +LV GAS T KD TP A+ + E +
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192
Score = 64.5 bits (158), Expect = 1e-12
Identities = 10/118 (8%), Positives = 24/118 (20%), Gaps = 16/118 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D+ L+ R + K ++ ++ G T L
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR------------- 287
Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+ AA ++ + +L + +
Sbjct: 288 ---VVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342
Score = 58.7 bits (143), Expect = 1e-10
Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 20/123 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D +H +R G D V+ +I S +Q+ G TALH A F
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRF-GCTALHLACKFGCVDTAKYLA 73
Query: 148 FFSSRG--------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDT 199
S G Q +H A M + + LV G P +L ++
Sbjct: 74 ---SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDER 124
Query: 200 ELA 202
E+
Sbjct: 125 EVN 127
Score = 54.5 bits (132), Expect = 3e-09
Identities = 16/190 (8%), Positives = 44/190 (23%), Gaps = 56/190 (29%)
Query: 15 SSKHYLDIINIL--------EKTSEGV---LKAARVGDIKMLKDLHSQGYSLKKIPPKDD 63
++ D+ + +E + R + + K+L +
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278
Query: 64 HPNLNHFFFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQD 123
+ G ++L V + + ++V++ + +
Sbjct: 279 N----------------GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE--VVRSL 320
Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKD 183
N G K ++ M +A A + +
Sbjct: 321 NT---------------------------GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRS 353
Query: 184 YDSNTPRALA 193
A++
Sbjct: 354 RSRARSSAVS 363
Score = 36.8 bits (86), Expect = 0.003
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
+H AA + L+ G S T+++ T LA + A YL
Sbjct: 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 65.3 bits (160), Expect = 3e-13
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 13/128 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ + L S G D+V+ II ++ +++ G TALH A I +
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDD--PSLPNDE-GITALHNAVCAGHTEIVKFLV 90
Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSN---TPRALALLAN 197
F S G T LH AA +C LV GA++ Y + +
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150
Query: 198 DTELAAYL 205
T+ + +L
Sbjct: 151 YTQCSQFL 158
Score = 64.2 bits (157), Expect = 8e-13
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 17/128 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ GQ +L G R + I + + ++ N L +++ + +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERI----AHGMRVKFNPLPLALLLDSSLEGEFDLVQRII 57
Query: 148 FFSSR----------GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
G TALH A I LV G ++ D D TP A N
Sbjct: 58 ---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
Query: 198 DTELAAYL 205
+ ++ +L
Sbjct: 115 NVQVCKFL 122
Score = 56.5 bits (137), Expect = 5e-10
Identities = 17/118 (14%), Positives = 27/118 (22%), Gaps = 32/118 (27%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
DS G T LH + + V K+++ A + QTA
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAA-----VFAMTYSDMQTA-------------- 140
Query: 145 MFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELA 202
+ L + + + ND EL
Sbjct: 141 ----------ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188
Score = 28.0 bits (63), Expect = 1.9
Identities = 7/74 (9%), Positives = 18/74 (24%), Gaps = 12/74 (16%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACA-----------PSSILNMQDND 125
L+ + ++ AL ++ C + D +
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217
Query: 126 KGQTALHKAAMFKR 139
G + ++ R
Sbjct: 218 -GYVPRNLLGLYPR 230
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 62.8 bits (154), Expect = 7e-13
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 17/125 (13%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
L + G + + ++ + +N Q+ G+TAL I L
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVN--VNAQNGF-GRTALQVMK-LGNPEIARRLL--- 57
Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
RG +H AA L+ A + ++D + N P LA
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 201 LAAYL 205
+ +L
Sbjct: 118 VVEFL 122
Score = 62.4 bits (153), Expect = 1e-12
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+ G+TAL + G+ ++ + ++ A +++D G +H AA
Sbjct: 35 NGFGRTALQV-MKLGNPEIARRLLLRGAN---PDLKDRT-GFAVIHDAARAGFLDTLQTL 89
Query: 147 LFF-------SSRGQTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLAND 198
L F + G LH AA + LV AS + +++ +T LA L
Sbjct: 90 LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Query: 199 TELAAYL 205
E+ + +
Sbjct: 150 NEVVSLM 156
Score = 57.8 bits (141), Expect = 5e-11
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 23/104 (22%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICW 144
D G +H +R G D ++ ++ +N++DN+ G LH AA +
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLL-----EFQADVNIEDNE-GNLPLHLAAKEGHLRVVE 120
Query: 145 MFLFFSSR-----------GQTALHKAAMFKRRSICCMLVAGGA 177
+ G TA A ++ R + ++ A GA
Sbjct: 121 FLV---KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.0 bits (87), Expect = 0.001
Identities = 16/92 (17%), Positives = 22/92 (23%), Gaps = 14/92 (15%)
Query: 124 NDKGQTALHKAAMFKRRSICWMFLFFSSRG----------QTALHKAAMFKRRSICCMLV 173
+ L AA L +TAL I L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLL---QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL 57
Query: 174 AGGASLTVKDYDSNTPRALALLANDTELAAYL 205
GA+ +KD A A + L
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTL 89
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 61.7 bits (151), Expect = 1e-12
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 20/130 (15%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
L + G + V+ ++ A N + G+ + M + +
Sbjct: 9 GGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRF-GRRPIQVMMM-GSAQVAELL 63
Query: 147 LFFSSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALL 195
L G +H AA +L GA L V D P LA
Sbjct: 64 L---LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 196 ANDTELAAYL 205
++A YL
Sbjct: 121 QGHRDIARYL 130
Score = 47.1 bits (113), Expect = 2e-07
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 16/100 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
+ G+ + G V + ++ A N D +H AA
Sbjct: 42 NRFGRRPIQVMMM-GSAQVAELLLLHGAE-----PNCADPATLTRPVHDAAREGFLDTLV 95
Query: 145 MFL-------FFSSRGQTALHKAAMFKRRSICCMLVAGGA 177
+ + G+ + A R I L A
Sbjct: 96 VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 41.3 bits (98), Expect = 3e-05
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIA 112
LH G L D+ G+ + GH+D+ +Y+ A
Sbjct: 97 LHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 64.4 bits (158), Expect = 1e-12
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 10/122 (8%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF- 149
G + V ++ +N + D G TALH+A + + +
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGAD--INYANVD-GLTALHQACIDDNVDMVKFLVENG 96
Query: 150 ------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
+ G LH AA I L++ GA + + + +TP +A EL
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 204 YL 205
Sbjct: 157 NE 158
Score = 63.7 bits (156), Expect = 2e-12
Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 34/187 (18%)
Query: 24 NILEKTSEGVL---KAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDLHSQ 80
++ SEG A ++L++ ++ + K++ + Q L+S
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSG 188
Query: 81 GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRR 140
+ + G TALH + G+ +V+K +I +N++D D
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD--VNIKDYD--------------- 231
Query: 141 SICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
G T LH AA + + C +LV + + T +A
Sbjct: 232 ------------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279
Query: 201 LAAYLEK 207
L +K
Sbjct: 280 LEELQKK 286
Score = 57.9 bits (141), Expect = 2e-10
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 22/128 (17%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ G TALH + D+VK+++ + +N DN+ G LH AA I +
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNE-GWIPLHAAASCGYLDIAEYLI 126
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
S+G T L A + V D R
Sbjct: 127 ---SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKEEERIM 177
Query: 198 DTELAAYL 205
+ +L
Sbjct: 178 LRDARQWL 185
Score = 57.1 bits (139), Expect = 3e-10
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 17/128 (13%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
D+ + G + ++ + + A L
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPV----VKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAN 197
RG TALH+A + + LV GA++ D + P A
Sbjct: 61 ---ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 198 DTELAAYL 205
++A YL
Sbjct: 118 YLDIAEYL 125
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 62.7 bits (153), Expect = 2e-12
Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 15/126 (11%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
L + G +VV+ + + + + G TALH A SI FL +
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMND--PSQPNEE-GITALHNAICGANYSIV-DFLITA 76
Query: 151 --------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKD-YDSNTPRALALLANDT-- 199
S G T LH AA IC LV GA++ D T +
Sbjct: 77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA 136
Query: 200 ELAAYL 205
+ A YL
Sbjct: 137 DCATYL 142
Score = 61.5 bits (150), Expect = 6e-12
Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 21/128 (16%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
+ G TALH + +V ++I A +N D+ G T LH AA IC
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGAN-----VNSPDSH-GWTPLHCAASCNDTVIC- 103
Query: 145 MFLFF---------SSRGQTALHKAAMFKRRSICCM--LVAGGASLTVKDYDSNTPRALA 193
M L S G TA K ++ C L S+ + + +
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163
Query: 194 LLANDTEL 201
EL
Sbjct: 164 SAEFGDEL 171
Score = 59.6 bits (145), Expect = 3e-11
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 18/114 (15%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII---ACAPSSILNMQDNDKGQTALHKAAMFKRRSICW 144
DS G T LH + + ++ A + G TA K ++
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGAA-----IFATTLSDGATAFEKCDPYREGYADC 138
Query: 145 MFLFFS---------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTP 189
S AL + + ++ +D T
Sbjct: 139 ATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETD 191
Score = 41.1 bits (97), Expect = 9e-05
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 107 VKYIIACAPSSILNMQDNDK--GQTALHKAAMFKRRSICWMFL-------FFSSRGQTAL 157
++ ++ A S + L AA+ + + + G TAL
Sbjct: 1 MRSVLRKAGS--PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58
Query: 158 HKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
H A SI L+ GA++ D TP A NDT + L
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106
Score = 36.9 bits (86), Expect = 0.002
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV 107
L + ++L D +T + + +G + V
Sbjct: 171 LSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 35.7 bits (83), Expect = 0.006
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKAA 135
L S+ ++S AL S D + + + +D +T AA
Sbjct: 142 LADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESV---TVLRRDGP-EETDWWWAA 196
Query: 136 M 136
+
Sbjct: 197 L 197
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 59.1 bits (144), Expect = 5e-12
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 35/123 (28%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSIC 143
+ S L +R G D V+ ++ + + +D +
Sbjct: 20 MGSDLGKKLLEAARAGQDDEVRILM-----ANGADVAAKDKN------------------ 56
Query: 144 WMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAA 203
G T LH AA + +L+ GA + +D T +++ + +LA
Sbjct: 57 ---------GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Query: 204 YLE 206
L+
Sbjct: 108 ILQ 110
Score = 29.1 bits (66), Expect = 0.38
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 79 SQGYSLLSIDSVGQTALHYGSRYGHKDVVKYI 110
G + + D G+TA G++D+ + +
Sbjct: 78 EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 60.2 bits (147), Expect = 6e-12
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 91 GQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
L + G + V+ ++ A N ++ G+ + M + + L
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGAN---PNAPNSY-GRRPIQVMMM-GSARVAELLL-- 64
Query: 150 SSRG-----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLAND 198
G +H AA +L GA L V+D P LA
Sbjct: 65 -LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Query: 199 TELAAYL 205
++A YL
Sbjct: 124 RDVARYL 130
Score = 51.7 bits (125), Expect = 7e-09
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 15/122 (12%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+S G+ + G V + ++ + N D +H AA +
Sbjct: 42 NSYGRRPIQVMMM-GSARVAELLLL-HGAEP-NCADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
+ G+ + A R + L A + + ++
Sbjct: 99 RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSD 153
Query: 201 LA 202
+
Sbjct: 154 IP 155
Score = 44.8 bits (107), Expect = 2e-06
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAA 135
LH G L D+ G+ + GH+DV +Y+ A A +G A
Sbjct: 97 LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG--------GTRGSNHARIDA 147
Score = 35.5 bits (83), Expect = 0.004
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 123 DNDKGQTALHKAAMFKRRSICWMFLF-------FSSRGQTALHKAAMFKRRSICCMLVAG 175
+ L AA R L +S G+ + M + +L+
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLH 66
Query: 176 GASLTVKDYDSNT 188
GA D + T
Sbjct: 67 GAEPNCADPATLT 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 59.7 bits (146), Expect = 7e-12
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 12/125 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ G+TAL +G + ++ S N+QD G + +H AA + +
Sbjct: 33 NRFGKTALQVMM-FGSTAIALELLKQGAS--PNVQDTS-GTSPVHDAARTGFLDTLKVLV 88
Query: 148 FF-------SSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
G +H A ++ L A + L +D TP LAL +
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQD 147
Query: 201 LAAYL 205
L L
Sbjct: 148 LVDIL 152
Score = 59.0 bits (144), Expect = 2e-11
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
L + G V+ ++ + + G+TAL MF +I L
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRF-GKTALQ-VMMFGSTAIALELL--- 55
Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTE 200
+G + +H AA +LV GA + V D P LA+ T
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115
Query: 201 LAAYLEK 207
+ ++L
Sbjct: 116 VVSFLAA 122
Score = 38.5 bits (91), Expect = 4e-04
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D+ G T L + G +D+V +
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQ 153
Score = 33.9 bits (79), Expect = 0.013
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 126 KGQTALHKAAMFKRRSICWMFLF--------FSSRGQTALHKAAMFKRRSICCMLVAGGA 177
+ L AA L + G+TAL MF +I L+ GA
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGA 59
Query: 178 SLTVKDYDSNTPRALALLANDTELAAYL 205
S V+D +P A + L
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVL 87
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 60.5 bits (148), Expect = 1e-11
Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 17/126 (13%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS 150
L ++ K V + + ++ D + G T L+ A I +
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQ--VDEVDTE-GNTPLNIAVHNNDIEIAKALI--- 59
Query: 151 SRG----------QTALHKAAMFKRRSICCMLVAGGAS-LTVKDYDSNTPRALALLANDT 199
RG + A R I ++ L + A
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119
Query: 200 ELAAYL 205
+ L
Sbjct: 120 DNVKLL 125
Score = 59.8 bits (146), Expect = 2e-11
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 77 LHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHK 133
L Y + +D+ G T L+ ++ K +I +N+Q++ +
Sbjct: 25 LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-----DRGADINLQNSI-SDSPYLY 78
Query: 134 AAMFKRRSICWMFLFF--------SSRGQTALHKAAMFKRRSICCMLV-AGGASLTVKDY 184
A R I L + G AL AA +L+ G + ++
Sbjct: 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138
Query: 185 DSNTP 189
T
Sbjct: 139 FGYTA 143
Score = 57.8 bits (141), Expect = 1e-10
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL 147
+ G AL + GH D VK ++ I + Q++ G TAL +A +
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDF-GYTALIEAVGLRE-------- 152
Query: 148 FFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
++ ++ I +L+ GA ++KD T A TE++ L
Sbjct: 153 --GNQL----YQD-------IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 39.7 bits (94), Expect = 2e-04
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 121 MQDNDKGQTALHKAAMFKRRSICWMFLFFS---------SRGQTALHKAAMFKRRSICCM 171
M+ + L A + + + + G T L+ A I
Sbjct: 1 MKTYE-VGALLEAANQRDTKKVKEILQ--DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA 57
Query: 172 LVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
L+ GA + +++ S++P A TE+ AY+
Sbjct: 58 LIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Score = 38.2 bits (90), Expect = 7e-04
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D+ G+TA+ Y ++ G+ ++ K +
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILA 198
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 61.3 bits (149), Expect = 1e-11
Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 41/173 (23%)
Query: 74 LKDLHSQGYSLLSID----SVGQTALHY---GSRYGHKDVVKYIIACAPSS-----ILNM 121
L L + L + S G+T L G D + ++ A + +N
Sbjct: 25 LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84
Query: 122 QDNDK---GQTALHKAAMFKRRSICWMFL---------------------FFSSRGQTAL 157
D GQTALH A + + + + + G+ L
Sbjct: 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144
Query: 158 HKAAMFKRRSICCMLVAGG---ASLTVKDYDSNTP--RALALLANDTELAAYL 205
AA + I L G A L +D NT +A+ N E ++
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197
Score = 52.9 bits (127), Expect = 9e-09
Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 37/157 (23%)
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYII-----------ACAPSSILNMQDNDKGQTALHKA 134
+ GQTALH K V+ ++ G+ L A
Sbjct: 88 DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147
Query: 135 AMFKRRSICWMFLFFS----------SRGQTALHKAAMFK---------RRSICCMLVAG 175
A + I SRG T LH + +L+
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207
Query: 176 GASL-------TVKDYDSNTPRALALLANDTELAAYL 205
A L + + D +P +A + ++
Sbjct: 208 CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Score = 52.5 bits (126), Expect = 1e-08
Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 25/112 (22%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSI-LNMQDNDKGQTALHKAAMFKRRSICWMFLFF 149
G+ L + +V Y+ L QD+ G T LH +
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR-GNTVLHALVAIADNTRENTKFVT 198
Query: 150 S-----------------------SRGQTALHKAAMFKRRSICCMLVAGGAS 178
+ G + L AA + I ++ +
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 47.9 bits (114), Expect = 5e-07
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 36/149 (24%)
Query: 93 TALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKAAMFKR--RSICWMFLFF 149
+ GS G + ++ +++ + ++ G+T L KA + R+ L
Sbjct: 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70
Query: 150 SS-------------------RGQTALHKAAMFKRRSICCMLVAGGASLTVKD------- 183
+ RGQTALH A + + +LV GA + +
Sbjct: 71 IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130
Query: 184 -------YDSNTPRALALLANDTELAAYL 205
Y P +LA N + YL
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Score = 37.5 bits (87), Expect = 0.002
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 76 DLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYII 111
L +++ G + L ++ G + ++II
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 59.7 bits (145), Expect = 2e-11
Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 32/178 (17%)
Query: 36 AARVGDIKMLKDLHSQGYSLKKIPPKDD-------HPNLNHFFFQLKDLHSQGYSLLSID 88
AA +G + +L +GY K+ K + + N + L ++G + S
Sbjct: 13 AAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT 72
Query: 89 SVGQTALHYGSRYGHKDVVKYIIACAPSSIL-------NMQDNDKGQTALHKAAMFKRRS 141
G T + G D+ C I + + K
Sbjct: 73 KEGTTLFFPLFQGGGNDITGTTELC---KIFLEKGADITALYKP-YKIVVFKNIFNYFVD 128
Query: 142 ICWMFLFFS--------------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYD 185
M + G TAL ++ M+ +K+
Sbjct: 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 49.7 bits (119), Expect = 6e-08
Identities = 11/112 (9%), Positives = 24/112 (21%), Gaps = 13/112 (11%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFL--- 147
+ + G + + ++ ++ L R I +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 148 ----FFSSRGQTALHKAAMFKRRSI------CCMLVAGGASLTVKDYDSNTP 189
+ G T I C + + GA +T
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 56.2 bits (137), Expect = 4e-11
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 91 GQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAMFKRRSICWMFL 147
G+T LH +R GH +VVK ++ +N +D + G+T LH AA + + L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLL 55
Query: 148 FFSSRG----------QTALHKAAMFKRRSICCMLVAGGA 177
G +T LH AA + +L+ GA
Sbjct: 56 ---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 51.6 bits (125), Expect = 3e-09
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSI---LNMQDNDKGQTALHKAAM 136
D G+T LH +R GH +VVK ++ +N +D + G+T LH AA
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKN-GRTPLHLAAR 77
Score = 39.6 bits (94), Expect = 6e-05
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII 111
D G+T LH +R GH +VVK ++
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 31.9 bits (74), Expect = 0.034
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 153 GQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYL 205
G+T LH AA + +L+ GA + KD + TP LA E+ L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 57.5 bits (139), Expect = 2e-10
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 12/132 (9%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHK 133
+ G+ L + +VK+++ + ++ +D+ G T LH
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV-GNTVLHA 190
Query: 134 AAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDSNTPRALA 193
++ T + + + L + + TP ALA
Sbjct: 191 LVEVADNTV----------DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240
Query: 194 LLANDTELAAYL 205
+ + AY+
Sbjct: 241 ASSGKIGVLAYI 252
Score = 51.7 bits (124), Expect = 2e-08
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 18/123 (14%)
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWM 145
GQTALH + +V ++ + + N FK+
Sbjct: 96 DSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANG---------DFFKKTKGRPG 144
Query: 146 FLFFSSRGQTALHKAAMFKRRSICCMLVAGG---ASLTVKDYDSNTPRALALLANDTELA 202
F F G+ L AA + +I L+ A ++ +D NT + D +
Sbjct: 145 FYF----GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200
Query: 203 AYL 205
Sbjct: 201 NTK 203
Score = 50.6 bits (121), Expect = 6e-08
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 10/61 (16%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
LH + G T L + G V+ YI+ ++ H A
Sbjct: 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ---------REIH-EPECRHAA 266
Query: 135 A 135
A
Sbjct: 267 A 267
Score = 45.9 bits (109), Expect = 2e-06
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 26/130 (20%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSI-----LNMQDNDKGQTALHKAAMF----- 137
+ ++ + ++ ++ S +D + G+T L KA +
Sbjct: 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69
Query: 138 ----------------KRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGASLTV 181
++ + + +GQTALH A + ++ +LV GA +
Sbjct: 70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129
Query: 182 KDYDSNTPRA 191
+
Sbjct: 130 AANGDFFKKT 139
Score = 45.5 bits (108), Expect = 3e-06
Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 15/88 (17%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSIL--------------NMQDNDKGQTALHK 133
DSVG T LH V + + + + + G T L
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK-GLTPLAL 239
Query: 134 AAMFKRRSICWMFLFFSSRGQTALHKAA 161
AA + + L H AA
Sbjct: 240 AASSGKIGVLAYILQREIHEPECRHAAA 267
Score = 31.3 bits (71), Expect = 0.18
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 84 LLSIDSVGQTALHYGSRYGHKD 105
+L + H + + H
Sbjct: 252 ILQREIHEPECRHAAAHHHHHH 273
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 56.2 bits (135), Expect = 8e-10
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 26/142 (18%)
Query: 87 IDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMF 146
+D G T LH+ + + ++VK+++ S+ DN G++ L KA F
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVK-HGSNR-LYGDNM-GESCLVKAVKSVNNYDSGTF 183
Query: 147 -----LFFSS------RGQTALHKAAMFKRRS------------ICCMLVAGGASLTVKD 183
+ +T LH + + + +V
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 243
Query: 184 YDSNTPRALALLANDTELAAYL 205
+ + +
Sbjct: 244 TNEKESKPNDKNGERKDSILEN 265
Score = 51.2 bits (122), Expect = 4e-08
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 20/127 (15%)
Query: 87 IDSVGQTALHY----GSRYGHKDVVKYIIACAPSSILNMQDND-----KGQTALHKAAMF 137
DS+ +T LH+ G KY + I+ Q+ + +
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256
Query: 138 KRRSICWMFLFFS-----------SRGQTALHKAAMFKRRSICCMLVAGGASLTVKDYDS 186
+R+ L S G T L+ AA SI L+ GA + +
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316
Query: 187 NTPRALA 193
P
Sbjct: 317 LRPVDFG 323
Score = 50.0 bits (119), Expect = 1e-07
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 15/126 (11%)
Query: 18 HYLDIINILEKTSEGVLKAARVGDIKMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKDL 77
H++ I + G AA+ ++ + + + + N + KD
Sbjct: 206 HHIIITS----GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261
Query: 78 HSQGYSLLSI--------DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQT 129
+ L I DS G T L+ +R G+ +V ++ + + G
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD--PFIANKS-GLR 318
Query: 130 ALHKAA 135
+ A
Sbjct: 319 PVDFGA 324
Score = 49.3 bits (117), Expect = 2e-07
Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGS-RYGHKDVVKYIIACAPSSI-LNMQDNDKGQTA 130
L++ + S + S ++V + + LN+ ++ G T
Sbjct: 78 MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP---NTQLNLNIPVDEHGNTP 134
Query: 131 LHKAAMFKRRSICWMFLFF-------SSRGQTALHKAAMF----KRRSICCMLVAGGASL 179
LH + + + G++ L KA + +L L
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194
Query: 180 TVKDYDSNTP 189
++D + T
Sbjct: 195 ILEDSMNRTI 204
Score = 47.3 bits (112), Expect = 1e-06
Identities = 17/157 (10%), Positives = 48/157 (30%), Gaps = 28/157 (17%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGSRYGH---KDVVKYIIACAPSSILNMQDNDKGQTAL 131
K L G + L D++G++ L + + + ++ + ++D+ +T L
Sbjct: 148 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-ILEDSM-NRTIL 205
Query: 132 HKAAMFKRRSICWMFLFF-------------------SSRGQTALHKAAMFKRRSICCML 172
H + + C + + + + +R+
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265
Query: 173 VAGGASLTV----KDYDSNTPRALALLANDTELAAYL 205
+ + +D + +T +A + + L
Sbjct: 266 LDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302
Score = 44.2 bits (104), Expect = 1e-05
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAP--SSILNMQDNDKGQTAL 131
+ + + + + + + KD + + +++LN QD++ G T L
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN-GDTCL 287
Query: 132 HKAAMFKRRSICWMFLFF-------SSRGQTALHKAA 161
+ AA SI L + + G + A
Sbjct: 288 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 53.4 bits (128), Expect = 8e-09
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 74 LKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
L L + + I + A + GH V+ + AP+ I+ M + A
Sbjct: 111 LCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-NYHAFRL 169
Query: 134 AA 135
AA
Sbjct: 170 AA 171
Score = 45.7 bits (108), Expect = 3e-06
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 77 LHSQGYSLLSID--SVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKA 134
L + + + A + GH V+ + AP+ M + A A
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE-NYYAFRWA 205
Query: 135 AM 136
A+
Sbjct: 206 AV 207
Score = 40.7 bits (95), Expect = 2e-04
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDN-----DKGQTALHKAA 135
L R G++ +++ L +N G+ L A
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVA 368
Score = 39.5 bits (92), Expect = 3e-04
Identities = 20/130 (15%), Positives = 30/130 (23%), Gaps = 17/130 (13%)
Query: 84 LLSIDSVGQTALHYGSRYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSIC 143
LL + A + YG K V +I + K +
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL- 276
Query: 144 WMFLFFSSRGQTALHKAAMFK--------RRSICCMLVAGGASLTVKDYDSNTPRALALL 195
+G L R + + A D+N LAL
Sbjct: 277 --------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328
Query: 196 ANDTELAAYL 205
+ A L
Sbjct: 329 LGNQGACALL 338
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 49.6 bits (118), Expect = 2e-07
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 115 PSSILNMQDN-DKGQTALHKAAMFKRRSICWMFLFFS----------SRGQTALHKAAMF 163
+ + + + + +TALH A R+ + F +G TALH +
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215
Query: 164 KRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
+L+ G AS+ + + TP +A L ++
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 37.3 bits (86), Expect = 0.002
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 68 NHFFFQLKDLHSQ-GYSLLSIDSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDND 125
+ + D Q +L G TALHY + + +K ++ A I N+
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA----NE 236
Query: 126 KGQTALHKAAMFKRRSICWMFLFFSSRGQTALHK 159
G+T L A K C L + G+ H
Sbjct: 237 SGETPLDIAKRLKHEH-CEELLTQALSGRFNSHV 269
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 46.5 bits (110), Expect = 1e-06
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 112 ACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLF----------FSSRGQTALHKAA 161
+ + LH A ++ + F ++ G TALH AA
Sbjct: 175 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA 234
Query: 162 MFKRRSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
++ + +L+ G A + + T +A + E LE++
Sbjct: 235 LYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 35.0 bits (80), Expect = 0.012
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 86 SIDSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKA 134
+ + G TALHY + Y D +K ++ A + N+ G+TAL A
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV----NEAGETALDIA 266
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 46.7 bits (110), Expect = 2e-06
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 113 CAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFS-------SRGQTALHKAAMFKR 165
+ + + T L +A C L S G+ LH A +
Sbjct: 221 AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280
Query: 166 RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEKS 208
+ C+ + GA L +D + P +A+ + ++ L +
Sbjct: 281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 27.8 bits (61), Expect = 2.4
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYII-ACAPSSILNMQDNDKGQTALHKA 134
DS G+ LH+ + GH + + A + +G+ L A
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGAR----DSEGRDPLTIA 308
Score = 27.1 bits (59), Expect = 4.8
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 73 QLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVV 107
+G L + DS G+ L + D+V
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 8e-06
Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 59/155 (38%)
Query: 14 PSSK-----HYLD-IINILEKTSEG----VLKAARVGDIKMLKDLHSQGYSLKKIPPKDD 63
P++ +L + +++E + G VL
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-------------------------- 87
Query: 64 HPNLNHF---FFQLKDLHSQGYSLLSIDSVGQTALHYGSRYGHKDVVK-YIIACAPSSIL 119
L F + + D+H+ LL + K+++K YI A +
Sbjct: 88 ---LTEFENCYLEGNDIHALAAKLLQENDTTLVK--------TKELIKNYITARI---MA 133
Query: 120 NMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQ 154
+ K +AL +A + F GQ
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQL---VAIFG--GQ 163
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 39.1 bits (91), Expect = 5e-04
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 116 SSILNMQDNDKGQTALHKAAMFKRRSICWM--FLF--------FSSRGQTALHKAAMFKR 165
+ + LH A ++ + F+ ++ G TALH AA++ +
Sbjct: 160 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 219
Query: 166 RSICCMLVAGGASLTVKDYDSNTPRALALLANDTELAAYLEK 207
+L+ G A + + T +A + E LE+
Sbjct: 220 PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261
Score = 32.9 bits (75), Expect = 0.067
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 88 DSVGQTALHYGSRYGHKDVVKYIIAC-APSSILNMQDNDKGQTALHKA 134
+ G TALHY + Y D +K ++ A + N+ G+TAL A
Sbjct: 204 AADGNTALHYAALYNQPDCLKLLLKGRALVGTV----NEAGETALDIA 247
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 28.4 bits (63), Expect = 0.69
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 100 RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHKAAMFKRRSICWMFLFFSSRGQTALHK 159
+YG VV I +L D D + + A+ K+ + + + +G+ L
Sbjct: 27 KYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV----KGKARLGT 82
Query: 160 AAMFKRRSICCMLVAGG 176
K ++ +
Sbjct: 83 LVNQKTSAVAALTEVRA 99
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP,
RNA binding protein; NMR {Saccharomyces cerevisiae} PDB:
2lbx_A
Length = 121
Score = 26.8 bits (59), Expect = 2.7
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 75 KDLHSQGYSLLSIDSVGQTALHYGS-RYGHKDVVKYIIACAPSSILNMQDNDKGQTALHK 133
K L+ + + + A + + G K+VVK + ++ D H
Sbjct: 2 KKLNKKVLKTV------KKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHI 55
Query: 134 AAMFKRRSICWMFLFFSSRGQTALHKAAMFKRRSICCMLVAGGAS 178
+ + S+ ++F+ + L A KR + +V G
Sbjct: 56 PVLCEDHSVPYIFI----PSKQDLGAAGATKRPTSVVFIVPGSNK 96
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 27.5 bits (62), Expect = 3.3
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 8 LIHVGLPSSKHYLDIINILEKTSEGVLKAARVGDIKML-KDLHSQGYS 54
+ VGLP L I+ + K A V +++ + DL Y+
Sbjct: 172 TLFVGLPPPADRLAILKTITKNGTKPPLDADV-NLEAIAGDLRCDCYT 218
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.6
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 177 ASLTVKDYDSNTPRALALLAN 197
ASL K Y ++ ALA+ A
Sbjct: 27 ASL--KLYADDSAPALAIKAT 45
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 26.8 bits (59), Expect = 5.6
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 12/62 (19%)
Query: 21 DIINILEKTSEGVLKAARVGDI----KMLKDLHSQGYSLKKIPPKDDHPNLNHFFFQLKD 76
D I ++ K + ++K V + +L DL + I L F L D
Sbjct: 258 DWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII--------LKELTFSLLD 309
Query: 77 LH 78
+
Sbjct: 310 VE 311
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.396
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,048,360
Number of extensions: 171371
Number of successful extensions: 1342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 274
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.7 bits)