Query psy4237
Match_columns 225
No_of_seqs 156 out of 974
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:20:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01029 rpsG_bact ribosomal 100.0 7.6E-54 1.6E-58 355.4 17.5 144 64-224 11-154 (154)
2 PRK05302 30S ribosomal protein 100.0 1.1E-53 2.4E-58 355.1 17.2 144 64-224 13-156 (156)
3 CHL00053 rps7 ribosomal protei 100.0 3.6E-51 7.9E-56 339.7 18.2 143 64-223 13-155 (155)
4 COG0049 RpsG Ribosomal protein 100.0 1.4E-48 3E-53 320.0 16.5 138 63-217 11-148 (148)
5 TIGR01028 S7_S5_E_A ribosomal 100.0 9.5E-48 2.1E-52 327.0 16.3 154 47-217 16-186 (186)
6 PRK04027 30S ribosomal protein 100.0 2.1E-47 4.6E-52 326.4 17.0 155 47-217 25-195 (195)
7 PTZ00091 40S ribosomal protein 100.0 3E-46 6.4E-51 318.7 16.3 154 47-217 20-193 (193)
8 KOG3291|consensus 100.0 5.9E-46 1.3E-50 318.8 14.5 180 19-217 25-208 (208)
9 PF00177 Ribosomal_S7: Ribosom 100.0 5.1E-45 1.1E-49 300.1 18.5 136 65-217 13-148 (148)
10 KOG1086|consensus 38.6 2E+02 0.0044 28.6 8.6 143 37-203 132-291 (594)
11 KOG3960|consensus 33.2 47 0.001 30.4 3.3 32 92-139 131-168 (284)
12 PF13374 TPR_10: Tetratricopep 32.2 1.1E+02 0.0024 17.9 4.5 31 74-104 5-35 (42)
13 COG5573 Predicted nucleic-acid 29.2 29 0.00063 28.8 1.2 45 181-225 57-101 (142)
14 PF12854 PPR_1: PPR repeat 23.7 1.1E+02 0.0023 18.5 2.8 24 73-96 9-32 (34)
15 PF15127 DUF4565: Protein of u 22.6 1.1E+02 0.0023 23.8 3.1 26 183-220 56-81 (91)
16 PF10798 YmgB: Biofilm develop 21.9 1.8E+02 0.0039 20.6 4.0 33 72-104 5-37 (61)
17 PF07719 TPR_2: Tetratricopept 21.4 1.7E+02 0.0037 16.4 4.3 25 76-100 6-30 (34)
18 PF14590 DUF4447: Domain of un 21.3 33 0.00072 28.5 0.1 29 14-42 87-115 (166)
19 PF10963 DUF2765: Protein of u 21.1 2.9E+02 0.0064 20.9 5.2 64 72-143 17-80 (83)
No 1
>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle. This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.
Probab=100.00 E-value=7.6e-54 Score=355.45 Aligned_cols=144 Identities=32% Similarity=0.562 Sum_probs=140.4
Q ss_pred CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
.+||+|.|++|++|||+||++|||++|++||+++|++|+.. ++.||+++|++||+||+|+++|+
T Consensus 11 ~~d~~y~~~lv~~lin~lM~~GKK~~A~kI~~~al~~i~~~----------------~~~nPi~vl~~Ai~nv~P~~evk 74 (154)
T TIGR01029 11 PPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKK----------------TGEDPLEVFEQALENVKPLVEVK 74 (154)
T ss_pred CCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----------------cCCCHHHHHHHHHHhCCCCeeeE
Confidence 45999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY 223 (225)
Q Consensus 144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR 223 (225)
++++||.+||||++|++.||+++||+||+++|++++ ..+|+++||+||++|++|+|.+++||+|+||||++||||+|||
T Consensus 75 ~~r~gG~~yqvP~~v~~~rr~~lAirWil~~a~~r~-~~~~~~~La~Eii~A~~~~g~aikkKee~hk~AeaNRaf~h~R 153 (154)
T TIGR01029 75 SRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRG-GKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153 (154)
T ss_pred EeecCCEEEEEeeEcCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCceeeHHHHHHHHHHHhHhHhccc
Confidence 999999999999999999999999999999999986 5699999999999999999999999999999999999999999
Q ss_pred c
Q psy4237 224 F 224 (225)
Q Consensus 224 W 224 (225)
|
T Consensus 154 w 154 (154)
T TIGR01029 154 W 154 (154)
T ss_pred C
Confidence 8
No 2
>PRK05302 30S ribosomal protein S7; Validated
Probab=100.00 E-value=1.1e-53 Score=355.11 Aligned_cols=144 Identities=33% Similarity=0.576 Sum_probs=140.5
Q ss_pred CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
.+||+|+||+|++|||+||++|||++|++||+++|++|+.. +++||++||++||+||+|+++|+
T Consensus 13 ~~d~~~~~~lv~~lin~lmk~GKK~~A~kI~~~al~~I~~~----------------~~~npl~il~~Ai~nv~P~~evk 76 (156)
T PRK05302 13 LPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEK----------------TGKDPLEVFEKALENVKPVVEVK 76 (156)
T ss_pred CCCCCcCCHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH----------------cCCChHHHHHHHHHhCCCCeEEe
Confidence 46999999999999999999999999999999999999988 89999999999999999999999
Q ss_pred EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY 223 (225)
Q Consensus 144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR 223 (225)
++++||.+||||+||++.||+++||+||+++|++|+ ..+|+++||+||++|++|+|.++++|+|+||+|++||||+|||
T Consensus 77 ~~r~gG~~~~vP~~i~~~rr~~lAirwil~~a~~r~-~~~~~~~La~Eii~A~~~~g~aikkK~e~hk~A~aNRa~ah~R 155 (156)
T PRK05302 77 SRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRG-EKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYR 155 (156)
T ss_pred eeccCCEEEEEeEEeCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCeeehHHHHHHHHHHhhhHhhcC
Confidence 999999999999999999999999999999999976 5699999999999999999999999999999999999999999
Q ss_pred c
Q psy4237 224 F 224 (225)
Q Consensus 224 W 224 (225)
|
T Consensus 156 ~ 156 (156)
T PRK05302 156 W 156 (156)
T ss_pred C
Confidence 8
No 3
>CHL00053 rps7 ribosomal protein S7
Probab=100.00 E-value=3.6e-51 Score=339.66 Aligned_cols=143 Identities=27% Similarity=0.506 Sum_probs=139.1
Q ss_pred CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
.+||.|.|++|++|||+||++|||++|++||+++|++|+.. ++.||+++|++||+||+|+++++
T Consensus 13 ~~d~~~~~~lv~~lin~lm~~GKK~~A~kIv~~al~~i~~~----------------~~~npi~vl~~Ai~N~~P~~evk 76 (155)
T CHL00053 13 KPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQK----------------TEKNPLSVLRQAIRNVTPDVEVK 76 (155)
T ss_pred CCCCCcCcHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----------------cCCCHHHHHHHHHHhCCCcEEEE
Confidence 56999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY 223 (225)
Q Consensus 144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR 223 (225)
++++||++||||+||++.||+++||+||+++|++++ ..+|+++||+||++|++|+|.+++||+|+||+|++||||+|||
T Consensus 77 ~~r~gG~~~qvPv~v~~~rr~~lAirWil~~ar~r~-~~~~~~~La~Eii~A~~~~g~aikkK~e~hk~A~aNRa~~h~r 155 (155)
T CHL00053 77 ARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRS-GRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155 (155)
T ss_pred EEeeCCEEEEEeeEcCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhHhHhccC
Confidence 999999999999999999999999999999999986 4589999999999999999999999999999999999999998
No 4
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-48 Score=319.98 Aligned_cols=138 Identities=33% Similarity=0.522 Sum_probs=134.5
Q ss_pred CCCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeE
Q psy4237 63 FQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 142 (225)
Q Consensus 63 ~~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l 142 (225)
..+||+|.+++|++|||.||++|||++|++||+.||++|..+ |++||+++|++||+|++|.+++
T Consensus 11 ~~~dpk~~~~iv~rliN~iM~~GKK~~A~~Ivy~Af~ii~~k----------------Tg~~Piqvf~~Ai~N~~P~~Ev 74 (148)
T COG0049 11 VLPDPKYNSVIVERLINKIMRDGKKSLAEKIVYGAFDIIEKK----------------TGQNPLQVFEKAIENVKPREEV 74 (148)
T ss_pred CCCCcccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH----------------HCCChHHHHHHHHHhcCchhhe
Confidence 357999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred EEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhc
Q psy4237 143 RSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANR 217 (225)
Q Consensus 143 ~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNR 217 (225)
+++++||.+|||||+++|.||..|||+||+++|+++. +++|.++||+|||||++|+|.+||||+|+||||+|||
T Consensus 75 ~srrvGGa~yqvpVeV~p~RR~~lAlrwi~~~Ar~r~-~ktm~erLA~Eli~Aan~~g~AikKked~hRmAeAnr 148 (148)
T COG0049 75 KSRRVGGATYQVPVEVRPRRRVALALRWIVEGARKRN-EKTMAERLANELIDAANNTGAAIKKKEDTHRMAEANR 148 (148)
T ss_pred eeeeeCCeeeEecCccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999984 7799999999999999999999999999999999997
No 5
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic). This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.
Probab=100.00 E-value=9.5e-48 Score=326.98 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=147.0
Q ss_pred cccCCCCccCCCCCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q psy4237 47 NELKNYTDVPVKPPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATS 114 (225)
Q Consensus 47 ~d~~~~~~~~ik~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~ 114 (225)
.|++|..|+.++|...++|++.+ .+++|++|||+||++ |||++|++||++||++|+..
T Consensus 16 ~d~~l~~yi~~~~~~~pht~gr~~~k~f~k~~~~iV~rliN~lM~~g~n~GKK~~A~kIv~~A~~iI~~~---------- 85 (186)
T TIGR01028 16 KDPSLKDYINLEPKYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIEKR---------- 85 (186)
T ss_pred cCCCHHhhhhcCceeccchhhhhhccccCcccCHHHHHHHHHHhccCcCCCcHHHHHHHHHHHHHHHHHH----------
Confidence 69999999999999999998877 459999999999997 99999999999999999998
Q ss_pred chhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHH
Q psy4237 115 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNLAQI 191 (225)
Q Consensus 115 ~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~---k~~~~~~~e~La~E 191 (225)
+++||++||++||+||+|+++++++++||.+||||+++++.||.++||+||+++|++ |+ .++|+++||+|
T Consensus 86 ------t~~nPi~vl~~AI~N~~P~~ev~~~r~GG~~yqVPv~v~p~Rr~~lAirWI~~~ar~~~~R~-~k~m~~~LA~E 158 (186)
T TIGR01028 86 ------TGENPIQVLVDAIENAGPREDTTRIGYGGIVYRQAVDISPLRRVDQALRNIALGAREAAFRN-KKSIAECLAEE 158 (186)
T ss_pred ------hCCChHHHHHHHHHcCCCCeEEEEEecCCEEEEeccccCHHHHHHHHHHHHHHHHHHhcccC-CCcHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999998 44 67999999999
Q ss_pred HHHHHcCC--CchhhhhHHHHHHHHHhc
Q psy4237 192 LIDGADNK--GKVVKKKTDLHRQCEANR 217 (225)
Q Consensus 192 Ii~A~~n~--G~aikKK~elHK~AeaNR 217 (225)
|++|++|+ |.+|+||+|+||||+|||
T Consensus 159 ii~A~~~~g~g~AikKKeE~hr~AeaNR 186 (186)
T TIGR01028 159 IILAANGDSKSYAIKKKEELERVAKSAR 186 (186)
T ss_pred HHHHHhCCCCCceeehHHHHHHHHHhcC
Confidence 99999998 579999999999999998
No 6
>PRK04027 30S ribosomal protein S7P; Reviewed
Probab=100.00 E-value=2.1e-47 Score=326.38 Aligned_cols=155 Identities=22% Similarity=0.328 Sum_probs=148.5
Q ss_pred cccCCCCccCCCCCCCCCCCCCcc--------chHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q psy4237 47 NELKNYTDVPVKPPTSFQTCSTFY--------NPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATS 114 (225)
Q Consensus 47 ~d~~~~~~~~ik~a~~~~t~~~~~--------d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~ 114 (225)
.|++|..|+.++|...++|.+.+. +++|++|||.||++ |||++|++||+.||++|+.+
T Consensus 25 ~d~~l~~yi~~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~~~n~GKK~~A~~Iv~~AfeiI~~k---------- 94 (195)
T PRK04027 25 RDPSLKRYINLTPVLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYNIVKEAFEIIEKR---------- 94 (195)
T ss_pred cccchHhheeecceecCcccccccccCcccccCHHHHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHHH----------
Confidence 799999999999999999999884 49999999999999 99999999999999999998
Q ss_pred chhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHH
Q psy4237 115 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQIL 192 (225)
Q Consensus 115 ~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~--~~~~~~e~La~EI 192 (225)
+++||++||++||+|++|.++++++++||.+|||||++++.||+++||+||+++|+++. +.++|+++||+||
T Consensus 95 ------T~~nPiqVl~~AI~N~~P~~Ev~~~r~GG~tyqvpVdV~p~Rr~~lAirwI~~~ar~r~fr~~ksm~e~LA~El 168 (195)
T PRK04027 95 ------TKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEALAEEI 168 (195)
T ss_pred ------HCCCHHHHHHHHHHcCCCCeEEEEEecCCEEEEeeeecCHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999853 5679999999999
Q ss_pred HHHHcC--CCchhhhhHHHHHHHHHhc
Q psy4237 193 IDGADN--KGKVVKKKTDLHRQCEANR 217 (225)
Q Consensus 193 i~A~~n--~G~aikKK~elHK~AeaNR 217 (225)
++|++| +|.+|+||+|+||||+|||
T Consensus 169 idAa~~~~~g~AikKKeE~hRmAeANr 195 (195)
T PRK04027 169 IAAANNDPKSYAVRKKEEIERVAKSAR 195 (195)
T ss_pred HHHHcCCCCCceeecHHHHHHHHHhcC
Confidence 999999 5899999999999999998
No 7
>PTZ00091 40S ribosomal protein S5; Provisional
Probab=100.00 E-value=3e-46 Score=318.73 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=145.7
Q ss_pred cccCCCCccCCCC---CCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy4237 47 NELKNYTDVPVKP---PTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNK 111 (225)
Q Consensus 47 ~d~~~~~~~~ik~---a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~ 111 (225)
.|++|..|+.+++ ...++|.+.| .+++|++|||.||++ |||.+|++||++||++|...
T Consensus 20 ~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~grn~GKK~~A~~IV~~AfeiI~~~------- 92 (193)
T PTZ00091 20 SDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLL------- 92 (193)
T ss_pred cCcCHHHHhhcccCCceeeccccchhhcCccCcccCHHHHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHHH-------
Confidence 6999999998887 5589998877 469999999999999 99999999999999999988
Q ss_pred cCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhc---CCCCCCHHHHH
Q psy4237 112 ATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNL 188 (225)
Q Consensus 112 ~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~---k~~~~~~~e~L 188 (225)
+++||++||++||+||+|.++++++++||.+|||||+++|.||+++||+||+++|++ |+ .++|+++|
T Consensus 93 ---------t~~nPiqVl~~AI~N~~P~~e~~ri~~GG~~yqvpVdVsp~Rr~~lAirwI~~~ar~~~fR~-~ks~~e~L 162 (193)
T PTZ00091 93 ---------TDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRN-IKTIAECL 162 (193)
T ss_pred ---------HCCChHHHHHHHHHhCCCCeeeEEeecCCeEEEEeeecChHHHHHHHHHHHHHHHHhhcccC-CCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999 54 67999999
Q ss_pred HHHHHHHHcCC--CchhhhhHHHHHHHHHhc
Q psy4237 189 AQILIDGADNK--GKVVKKKTDLHRQCEANR 217 (225)
Q Consensus 189 a~EIi~A~~n~--G~aikKK~elHK~AeaNR 217 (225)
|+|||+|++|+ |.+|+||+|+||||+|||
T Consensus 163 A~Eli~Aa~~~~~s~AikKKeE~hR~AeANR 193 (193)
T PTZ00091 163 ADEIINASKESSNSYAIKKKDEVERVAKANR 193 (193)
T ss_pred HHHHHHHHhCCCCCcceehHHHHHHHHHhcC
Confidence 99999999999 559999999999999998
No 8
>KOG3291|consensus
Probab=100.00 E-value=5.9e-46 Score=318.79 Aligned_cols=180 Identities=28% Similarity=0.391 Sum_probs=158.3
Q ss_pred cceeecccCCCCCCCCCChhHHhHHhhhcccCCCCccCCCCCCCC--CCCCCccchHHHHHHHHHHhcChHHHHHHHHHH
Q psy4237 19 TAVRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSF--QTCSTFYNPVKEKFINYMMKKGNKELAREVFEY 96 (225)
Q Consensus 19 ~~~~~s~y~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ik~a~~~--~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~ 96 (225)
.+.+||.|+++|.||...++.+.++. +.....+.+.+-++.- .....+.|.++.+|+|++|++|||.+|++||+.
T Consensus 25 ~f~~~s~~~~~~~d~sl~dy~~~~~k---~~~~~~~~~~~~~~~~~~ka~~~~~e~l~~~l~n~~~~~GKK~~a~~Iv~~ 101 (208)
T KOG3291|consen 25 LFEKWSEDSVEFSDISLQDYIALKPK---DLTQLPHSAGRYAKKRFRKAQCPIVERLINKLMNHIMKNGKKLLARRIVKH 101 (208)
T ss_pred HHHHhhcccccccccccccccccccc---cccccccccchhhhhhhhhccccHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 35679999999999999988876653 2222233333333322 334449999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHh
Q psy4237 97 TVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK 176 (225)
Q Consensus 97 al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar 176 (225)
||++|++. ++.||++||++||+||.|+++++.+.+||++|||||||++.||+++||+||+++|+
T Consensus 102 aleiI~~~----------------t~~NPiqvl~~AI~n~~P~~~~~~i~r~g~~~~vpv~v~~~rr~~~Ai~wi~~~ar 165 (208)
T KOG3291|consen 102 ALEIIKRL----------------TERNPIQVLVQAIENCGPLEDVTRIGRAGTTYQVPVPVSPLRRVNLAIKWILTGAR 165 (208)
T ss_pred HHHHHHHH----------------hcCCHHHHHHHHHHhcCchhhceeecccceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 99999998 79999999999999999999999999999999999999999999999999999999
Q ss_pred cCC--CCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhc
Q psy4237 177 DKP--SEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANR 217 (225)
Q Consensus 177 ~k~--~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNR 217 (225)
++. +.++|+++||+|||+|++|+|.||+|||||||+|++||
T Consensus 166 ~~~~~~~~~~ae~La~ELi~Aakgs~~aikKKdeLhr~a~sNR 208 (208)
T KOG3291|consen 166 ERSFRNIKTLAECLADELIAAAKGSGNAIKKKDELHRMAEANR 208 (208)
T ss_pred hccccccccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHhccC
Confidence 975 45899999999999999999999999999999999998
No 9
>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [, , ]. This entry represents the S7 structural domain, which consists of a bundle of six helices and an extended beta hairpin between helices 3 and 4, with two or more RNA-binding sites on its surface [].; PDB: 3IZ6_F 3V28_G 2WRN_G 2HHH_G 2V46_G 3KNL_G 2UUC_G 2Y16_G 2Y0W_G 2J02_G ....
Probab=100.00 E-value=5.1e-45 Score=300.12 Aligned_cols=136 Identities=43% Similarity=0.705 Sum_probs=131.7
Q ss_pred CCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEE
Q psy4237 65 TCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRS 144 (225)
Q Consensus 65 t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ 144 (225)
+|+.|+|+++++|||+||++|||++|++||+++|+.|+.. ++.||+.+|++||+||+|++++++
T Consensus 13 ~~~~~~~~lv~k~in~lmk~GkK~~A~~i~~~al~~i~~~----------------~~~npi~il~~Ai~n~~P~~~v~~ 76 (148)
T PF00177_consen 13 PDPKFNDPLVKKFINRLMKDGKKSKAEKIVYKALEIIKKK----------------TNKNPIQILKQAIENVKPLVEVRS 76 (148)
T ss_dssp SBTTTCGHHHHHHHHHHHSTTBHHHHHHHHHHHHHHHHHH----------------HSSSHHHHHHHHHHHHS-SEEEEE
T ss_pred CCcccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc----------------cCCCHHHHHHHHHHHhccceeeee
Confidence 6999999999999999999999999999999999999887 799999999999999999999999
Q ss_pred EeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhc
Q psy4237 145 IKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANR 217 (225)
Q Consensus 145 ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNR 217 (225)
+++||++||||++|+++||+++||+||+++|++++ ..+|+++||+||++|++|+|.++++|+|+||+|++||
T Consensus 77 ~k~gg~~~~vP~~i~~~r~~~lAikWi~~~~~~r~-~~~~~~~La~Eii~a~~~~g~aikkK~~lhk~A~~NR 148 (148)
T PF00177_consen 77 IKKGGKTYQVPVPISPKRRIFLAIKWILEAARKRK-EKSFSERLANEIIDASNNKGSAIKKKEELHKMAEANR 148 (148)
T ss_dssp EEETTEEEEEEEEETHHHHHHHHHHHHHHHHHTSS-SSSHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHTG
T ss_pred eccCceeEEEEEeecHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999766 6699999999999999999999999999999999998
No 10
>KOG1086|consensus
Probab=38.64 E-value=2e+02 Score=28.62 Aligned_cols=143 Identities=16% Similarity=0.146 Sum_probs=85.6
Q ss_pred hhHHhHHhhh----cccCCCCccCCCCCCCC-CCCCCccchHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHhhhh
Q psy4237 37 HEDIDRIIAN----NELKNYTDVPVKPPTSF-QTCSTFYNPVKEKFINYMMKKG---NKELAREVFEYTVKSIKRIQIEK 108 (225)
Q Consensus 37 ~~~~~~~~~~----~d~~~~~~~~ik~a~~~-~t~~~~~d~lv~kfiN~lMk~G---KK~~A~~iv~~al~~Ik~~q~~k 108 (225)
|+.|+-+..+ .|+.+.....+-|+|.+ -..++|.|.--+++.-.|+++. .-..|-+++....+.=..+ ++|
T Consensus 132 kdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~k-~eK 210 (594)
T KOG1086|consen 132 KDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEHK-LEK 210 (594)
T ss_pred HHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6677666555 57777666444455555 7789999999999999999975 4556666666554433222 233
Q ss_pred hcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEee-CCeeEEeecccChHHHHHHHHHHHHHHHhcCC-------C
Q psy4237 109 YNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKR-AAVTYQVPIPISDKEARFKCMKWHIEIAKDKP-------S 180 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~-GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~-------~ 180 (225)
-++. +.-+..++.||+=+-++..-.. +|.. + -..-++|+=+-+.|.+.. +
T Consensus 211 iskR-------------~~aleev~n~vk~l~em~l~~s~eg~a-------~--pd~E~~lq~v~~~ce~lr~tlfrlas 268 (594)
T KOG1086|consen 211 ISKR-------------VKALEEVNNNVKLLEEMLLDYSQEGNA-------S--PDNELLLQEVYNRCEQLRPTLFRLAS 268 (594)
T ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHHhhccCCCC-------C--CcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3332 4557778888887777665443 3321 1 123467777777776632 0
Q ss_pred C-CCHHHHHHHHHHHHHcCCCchh
Q psy4237 181 E-VRFSDNLAQILIDGADNKGKVV 203 (225)
Q Consensus 181 ~-~~~~e~La~EIi~A~~n~G~ai 203 (225)
+ ..=-++| .||++|..|=..+|
T Consensus 269 et~dnD~aL-~eILqanD~ltrvi 291 (594)
T KOG1086|consen 269 ETEDNDPAL-AEILQANDNLTRVI 291 (594)
T ss_pred ccccCcHHH-HHHHhhhhhHHhhh
Confidence 0 0113444 46777766544443
No 11
>KOG3960|consensus
Probab=33.18 E-value=47 Score=30.43 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCchhhhhcCCCh------HHHHHHHHHhcCCc
Q psy4237 92 EVFEYTVKSIKRIQIEKYNKATSDEERESIILDP------YVIIDKAIENTKPI 139 (225)
Q Consensus 92 ~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nP------i~il~~AI~N~~P~ 139 (225)
+=|++|||.+|+. |-.|| ++||..||+-+.=+
T Consensus 131 kKVNEAFE~LKRr----------------T~~NPNQRLPKVEILRsAI~YIE~L 168 (284)
T KOG3960|consen 131 KKVNEAFETLKRR----------------TSSNPNQRLPKVEILRSAIRYIERL 168 (284)
T ss_pred HHHHHHHHHHHhh----------------cCCCccccccHHHHHHHHHHHHHHH
Confidence 3489999999998 34444 78999998766544
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=32.21 E-value=1.1e+02 Score=17.93 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q psy4237 74 KEKFINYMMKKGNKELAREVFEYTVKSIKRI 104 (225)
Q Consensus 74 v~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~ 104 (225)
...+-+.++..|+...|..++.+++++-++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4567788999999999999999999988775
No 13
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.17 E-value=29 Score=28.80 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccccC
Q psy4237 181 EVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYFG 225 (225)
Q Consensus 181 ~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyRWw 225 (225)
+..+++.++.|++.++..+..++.--.+.+..|-.=+.--||.+|
T Consensus 57 K~~~s~~~i~~lie~~~~~~~Iv~~t~~~~~~a~~l~~ry~fs~W 101 (142)
T COG5573 57 KYGASEQLIQTLIEAFRRQCRIVHLTHEEVVQASRLAPRYHFSFW 101 (142)
T ss_pred hcCCcHHHHHHHHHHHHhhceeecCCHHHHHHHhccccccCchHH
Confidence 458999999999999999999999999999988766666677666
No 14
>PF12854 PPR_1: PPR repeat
Probab=23.67 E-value=1.1e+02 Score=18.53 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHH
Q psy4237 73 VKEKFINYMMKKGNKELAREVFEY 96 (225)
Q Consensus 73 lv~kfiN~lMk~GKK~~A~~iv~~ 96 (225)
.-.-+|+.+.+.|+-..|.+++.+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345788999999999999999875
No 15
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=22.65 E-value=1.1e+02 Score=23.78 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhcccc
Q psy4237 183 RFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYA 220 (225)
Q Consensus 183 ~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRaya 220 (225)
-++++|++||+.-+ |..-|+.|..|.
T Consensus 56 EyA~rLSqEIl~dA------------lqQWA~~n~kY~ 81 (91)
T PF15127_consen 56 EYAHRLSQEILSDA------------LQQWAENNIKYS 81 (91)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHhCcccc
Confidence 48999999998533 455676666663
No 16
>PF10798 YmgB: Biofilm development protein YmgB/AriR; InterPro: IPR024753 YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid, which indicates that YmgB has an important function in acid-resistance []. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole) [].; GO: 0042710 biofilm formation, 0071229 cellular response to acid; PDB: 2OXL_B.
Probab=21.88 E-value=1.8e+02 Score=20.62 Aligned_cols=33 Identities=6% Similarity=0.155 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q psy4237 72 PVKEKFINYMMKKGNKELAREVFEYTVKSIKRI 104 (225)
Q Consensus 72 ~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~ 104 (225)
.++...++-||..|....-..|+.+.+..+...
T Consensus 5 ~vL~~iv~ell~~g~~vsnKaII~~LI~~LE~e 37 (61)
T PF10798_consen 5 EVLGAIVRELLASGGHVSNKAIILKLIHRLESE 37 (61)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 577889999999999999999998888888664
No 17
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=21.36 E-value=1.7e+02 Score=16.44 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=19.9
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHH
Q psy4237 76 KFINYMMKKGNKELAREVFEYTVKS 100 (225)
Q Consensus 76 kfiN~lMk~GKK~~A~~iv~~al~~ 100 (225)
.+-..++..|+...|...+.+++.+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556788899999999999998874
No 18
>PF14590 DUF4447: Domain of unknown function (DUF4447); PDB: 2OX6_B.
Probab=21.25 E-value=33 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=22.0
Q ss_pred eeeeecceeecccCCCCCCCCCChhHHhH
Q psy4237 14 HHIFKTAVRSASFGPQFIDPIFKHEDIDR 42 (225)
Q Consensus 14 ~~~~~~~~~~s~y~~~~~~p~~~~~~~~~ 42 (225)
|-||.||--|.+|+|.|+--+.=-|-|..
T Consensus 87 fvvyptqa~y~qynpeflsslpltelynt 115 (166)
T PF14590_consen 87 FVVYPTQAIYTQYNPEFLSSLPLTELYNT 115 (166)
T ss_dssp EEE-SSHHHHHHH-GGGTTTS-SHHHHHH
T ss_pred EEEcccHHHHHhhCHHHhccCcHHHHHhh
Confidence 67899999999999999998877676653
No 19
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=21.14 E-value=2.9e+02 Score=20.87 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 72 PVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 72 ~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
..-.+|+|-++.++|-.=|...+.++..-=.+..+.+.-.+ .+.=.++|.-.-.+-.+|-++++
T Consensus 17 ~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~lle~--------~PGaa~qia~~v~eey~P~leI~ 80 (83)
T PF10963_consen 17 TAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELLEE--------NPGAAMQIAGAVNEEYAPDLEIT 80 (83)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHhhCCCceEE
Confidence 45679999999999999999988887765444433332211 33446888888889999988875
Done!