Query psy4237
Match_columns 225
No_of_seqs 156 out of 974
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:20:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gty_S TF, 30S ribosomal prote 100.0 2.1E-57 7.2E-62 373.9 15.9 144 64-224 6-149 (149)
2 3i1m_G 30S ribosomal protein S 100.0 1.2E-57 4.2E-62 384.7 14.6 146 63-225 12-157 (179)
3 1rss_A Ribosomal protein S7; R 100.0 1.2E-56 4.2E-61 370.0 17.7 144 64-224 8-151 (151)
4 1hus_A Ribosomal protein S7; R 100.0 2E-56 6.9E-61 370.1 16.8 144 64-224 12-155 (155)
5 3bbn_G Ribosomal protein S7; s 100.0 1.1E-54 3.9E-59 359.6 8.2 143 64-223 13-155 (155)
6 3r8n_G 30S ribosomal protein S 100.0 9.6E-53 3.3E-57 346.8 15.2 141 63-220 11-151 (151)
7 2xzm_G Ribosomal protein S7 co 100.0 3.9E-47 1.3E-51 325.3 19.5 154 47-217 25-200 (200)
8 1iqv_A Ribosomal protein S7; R 100.0 6.1E-47 2.1E-51 326.6 19.0 165 21-217 22-218 (218)
9 3u5c_F RP14, S2, YS8, 40S ribo 100.0 2.4E-46 8.1E-51 324.7 17.2 155 47-217 54-225 (225)
10 2zkq_g 40S ribosomal protein S 100.0 2.4E-47 8.3E-52 327.3 0.0 156 46-217 30-204 (204)
11 4afm_A Endoglucanase CEL5A; hy 36.5 5.7 0.00019 30.6 -0.6 43 23-65 72-117 (134)
12 4h7y_A Dual specificity protei 36.3 31 0.001 28.2 3.6 39 79-138 102-140 (161)
13 4ba6_A Endoglucanase CEL5A; ca 32.8 11 0.00039 29.2 0.5 45 21-65 72-119 (144)
14 2ypj_A Eccel5A, endoglucanase 31.9 12 0.00041 29.4 0.5 45 21-65 91-138 (155)
15 1pd3_A Nonstructural protein N 24.5 80 0.0027 21.2 3.5 25 163-187 13-39 (58)
16 2ox6_A Hypothetical protein SO 22.5 21 0.00073 28.4 0.4 29 14-42 87-115 (166)
No 1
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-57 Score=373.89 Aligned_cols=144 Identities=33% Similarity=0.540 Sum_probs=140.7
Q ss_pred CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
.+||+|+||+|++|||+||++|||++|++||+.||++|+.+ +++||++||++||+||+|+++|+
T Consensus 6 ~~dp~~~~~lv~kliN~lM~~GKK~~A~~Iv~~a~~~I~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk 69 (149)
T 3gty_S 6 PPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREK----------------TKKDPLEVFRQAVENVKPVLEVR 69 (149)
T ss_dssp CCCSSSCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHT----------------TSSCHHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH----------------cCCcHHHHHHHHHHhCCCCeEEE
Confidence 57999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY 223 (225)
Q Consensus 144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR 223 (225)
++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus 70 s~rvGG~~yqvPv~v~~~rr~~lAirWi~~~ar~r~-~k~m~~~LA~Eli~A~~~~g~aikKKee~hkmAeaNRAfahyR 148 (149)
T 3gty_S 70 PRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKK-GRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYR 148 (149)
T ss_dssp EECSSSSCEEEEEECCTHHHHHHHHHHHHHHHHTCS-SSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHTTSGGGCTTC
T ss_pred EEeeCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHhHhHhhcC
Confidence 999999999999999999999999999999999986 5699999999999999999999999999999999999999999
Q ss_pred c
Q psy4237 224 F 224 (225)
Q Consensus 224 W 224 (225)
|
T Consensus 149 w 149 (149)
T 3gty_S 149 W 149 (149)
T ss_dssp C
T ss_pred C
Confidence 9
No 2
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=100.00 E-value=1.2e-57 Score=384.65 Aligned_cols=146 Identities=29% Similarity=0.479 Sum_probs=137.4
Q ss_pred CCCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeE
Q psy4237 63 FQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 142 (225)
Q Consensus 63 ~~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l 142 (225)
..+||+|+|++|++|||+||++|||++|++||+.||++|+.+ +++||++||++||+||+|+++|
T Consensus 12 ~~pdp~y~~~lV~kliN~lM~~GKKs~A~~Iv~~A~~~I~~k----------------t~~nPl~vl~~AI~Nv~P~veV 75 (179)
T 3i1m_G 12 ILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQR----------------SGKSELEAFEVALENVRPTVEV 75 (179)
T ss_dssp CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCSHHHHHHHHHHHCCSEEE
T ss_pred CCCCCCcCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH----------------hCCCHHHHHHHHHHhCCCCeEE
Confidence 357999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred EEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhcccccc
Q psy4237 143 RSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222 (225)
Q Consensus 143 ~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahy 222 (225)
+++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+||||||||
T Consensus 76 ks~rvGG~tyqVPv~V~p~Rr~~lAirWii~~arkR~-~k~m~erLA~ELidAa~~~G~AikKKee~HkmAeANRAfaHy 154 (179)
T 3i1m_G 76 KSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHY 154 (179)
T ss_dssp ECCCCSSSCCCEEEECCTTHHHHHHHHHHHHHHTTCC-SSSHHHHHHHHHHHHHTSCSHHHHHHHHHHHHTTTGGGGC--
T ss_pred EEEeeCCEEEEEccccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHhHhHHhh
Confidence 9999999999999999999999999999999999975 669999999999999999999999999999999999999999
Q ss_pred ccC
Q psy4237 223 YFG 225 (225)
Q Consensus 223 RWw 225 (225)
|||
T Consensus 155 Rw~ 157 (179)
T 3i1m_G 155 RWL 157 (179)
T ss_dssp ---
T ss_pred ccc
Confidence 999
No 3
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=100.00 E-value=1.2e-56 Score=370.04 Aligned_cols=144 Identities=35% Similarity=0.590 Sum_probs=135.6
Q ss_pred CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
.+||+|+|++|++|||+||++|||++|++||+.||++|+.+ +++||+++|++||+||+|+++++
T Consensus 8 ~~dp~~~~~lv~kliN~lM~~GKKs~A~~Iv~~a~~~i~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk 71 (151)
T 1rss_A 8 QPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEK----------------TGQEPLKVFKQAVENVKPRMEVR 71 (151)
T ss_dssp CCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHhCCCceEEE
Confidence 45999999999999999999999999999999999999988 89999999999999999999999
Q ss_pred EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY 223 (225)
Q Consensus 144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR 223 (225)
++++||.+||||++|++.||+++||+||+++|++++ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus 72 ~~rvGG~tyqvPv~v~~~Rr~~lAirWi~~~ar~r~-~k~m~~~La~EiidA~~~~g~aikKKee~hrmAeaNRAfahyR 150 (151)
T 1rss_A 72 SRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYR 150 (151)
T ss_dssp EEEETTEEEEEEEECCHHHHHHHHHHHHHHHHTTSS-CSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHCC-----CSC
T ss_pred EeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCceeehHHHHHHHHHHhHhhhccC
Confidence 999999999999999999999999999999999986 5599999999999999999999999999999999999999999
Q ss_pred c
Q psy4237 224 F 224 (225)
Q Consensus 224 W 224 (225)
|
T Consensus 151 w 151 (151)
T 1rss_A 151 W 151 (151)
T ss_dssp C
T ss_pred C
Confidence 8
No 4
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=100.00 E-value=2e-56 Score=370.12 Aligned_cols=144 Identities=27% Similarity=0.504 Sum_probs=132.8
Q ss_pred CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
.+||+|+|++|++|||+||++|||++|++||+.||++|+.+ +++||++||++||+||+|+++|+
T Consensus 12 ~~dp~y~~~lV~kliN~lM~~GKKs~A~~Iv~~a~~~I~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk 75 (155)
T 1hus_A 12 LPDPIYNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRER----------------TGKDPMEVFEQALKNVMPVLEVR 75 (155)
T ss_dssp CCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHCCSEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHhCCCceEEE
Confidence 45999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY 223 (225)
Q Consensus 144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR 223 (225)
++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus 76 ~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~~~~g~aikKKee~hrmAeaNRAfahyR 154 (155)
T 1hus_A 76 ARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRN-EKTMEERLANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYR 154 (155)
T ss_dssp CCEETTEECCEEEECCHHHHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHC-------
T ss_pred EeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCceeehHHHHHHHHHHhHhhhccC
Confidence 999999999999999999999999999999999986 5699999999999999999999999999999999999999999
Q ss_pred c
Q psy4237 224 F 224 (225)
Q Consensus 224 W 224 (225)
|
T Consensus 155 w 155 (155)
T 1hus_A 155 W 155 (155)
T ss_dssp -
T ss_pred C
Confidence 8
No 5
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.1e-54 Score=359.57 Aligned_cols=143 Identities=28% Similarity=0.509 Sum_probs=139.4
Q ss_pred CCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEE
Q psy4237 64 QTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLR 143 (225)
Q Consensus 64 ~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~ 143 (225)
.+||+|+|++|++|||+||++|||++|++||+.||++|+.+ +++||++||++||+||+|+++|+
T Consensus 13 ~~dp~y~~~lv~kliN~lM~~GKKs~A~~Iv~~a~~~i~~k----------------t~~nPl~vl~~Ai~Nv~P~~evk 76 (155)
T 3bbn_G 13 KSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQK----------------TETNPLSVLRQAIRGVTPDIAVK 76 (155)
T ss_dssp CCCTTTCCSSGGGHHHHSCCTTCHHHHHHHHSHHHHTTTTT----------------CSSCTTHHHHHHGGGTCCSEEEC
T ss_pred CCCCccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----------------cCCChHHHHHHHHHhCCCCeEEE
Confidence 56999999999999999999999999999999999999887 89999999999999999999999
Q ss_pred EEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhccccccc
Q psy4237 144 SIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYY 223 (225)
Q Consensus 144 ~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRayahyR 223 (225)
++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+|||||||||
T Consensus 77 ~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~~~~g~aikKKee~hkmAeaNRAfahyR 155 (155)
T 3bbn_G 77 ARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRP-GRNMAFKLSSELVDAAKGSGDAVRKKEETHRMAEANRAFAHFR 155 (155)
T ss_dssp CEEETTEEECCEEECCHHHHHHHHTTHHHHHHHTCC-SSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSSSSGGGSCCC
T ss_pred EeccCCeEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999999999999999999999986 4599999999999999999999999999999999999999998
No 6
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=100.00 E-value=9.6e-53 Score=346.78 Aligned_cols=141 Identities=29% Similarity=0.469 Sum_probs=137.0
Q ss_pred CCCCCCccchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeE
Q psy4237 63 FQTCSTFYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 142 (225)
Q Consensus 63 ~~t~~~~~d~lv~kfiN~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l 142 (225)
..+||+|+||+|++|||+||++|||++|++||+.||++|+.+ +++||++||++||+||+|+++|
T Consensus 11 ~~~dp~~~~~lv~kliN~lM~~GKK~~A~~Iv~~a~~~I~~k----------------t~~nPl~vl~~Ai~Nv~P~~ev 74 (151)
T 3r8n_G 11 ILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQR----------------SGKSELEAFEVALENVRPTVEV 74 (151)
T ss_dssp CCCCTTTCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHTT----------------TCSCSHHHHHHHHHHHCCSEEE
T ss_pred CCCCCCcCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----------------hCCCHHHHHHHHHHhcCCCeEE
Confidence 357999999999999999999999999999999999999988 8999999999999999999999
Q ss_pred EEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCchhhhhHHHHHHHHHhcccc
Q psy4237 143 RSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYA 220 (225)
Q Consensus 143 ~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k~~~~~~~e~La~EIi~A~~n~G~aikKK~elHK~AeaNRaya 220 (225)
+++++||.+||||++|++.||+++||+||+++|++|+ .++|+++||+||+||++|+|.+|+||+|+||||+||||||
T Consensus 75 ks~rvGG~tyqvPv~v~~~Rr~~lAirWii~~ar~r~-~k~m~~~LA~ElidA~~~~g~aikKKee~hkmAeaNrAfa 151 (151)
T 3r8n_G 75 KSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA 151 (151)
T ss_dssp CCCCCSSCCCCCEEECCHHHHHHHHHHHHHHHHHTCC-SSCHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred EEEeeCCEEEEEecccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCcchhhhHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999976 6699999999999999999999999999999999999997
No 7
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=100.00 E-value=3.9e-47 Score=325.28 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=147.3
Q ss_pred cccCCCCccCC-C---CCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhc
Q psy4237 47 NELKNYTDVPV-K---PPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYN 110 (225)
Q Consensus 47 ~d~~~~~~~~i-k---~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~ 110 (225)
.|++|..|+.+ + |...++|.+.+ +|++|++|||+||++ |||++|++||+.||++|+.+
T Consensus 25 ~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~Iv~~A~~~I~~k------ 98 (200)
T 2xzm_G 25 QDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLV------ 98 (200)
T ss_dssp CSSSGGGSCSTTCTTTCCSSSCCCCCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHHHHHHHHHHHHHHHH------
T ss_pred cccchhhceeeccccCceecCCCcccccccccccccChHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH------
Confidence 78999999999 4 88888988766 689999999999999 99999999999999999998
Q ss_pred ccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhc---CCCCCCHHHH
Q psy4237 111 KATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDN 187 (225)
Q Consensus 111 ~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~---k~~~~~~~e~ 187 (225)
+++||++||++||+||+|+++++++++||.+||||++|++.||+++||+||+++|++ |+ .++|+++
T Consensus 99 ----------t~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~-~k~m~e~ 167 (200)
T 2xzm_G 99 ----------TGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKS-MRSIAET 167 (200)
T ss_dssp ----------HCSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred ----------cCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccC-CCcHHHH
Confidence 899999999999999999999999999999999999999999999999999999999 54 6699999
Q ss_pred HHHHHHHHHcC---CCchhhhhHHHHHHHHHhc
Q psy4237 188 LAQILIDGADN---KGKVVKKKTDLHRQCEANR 217 (225)
Q Consensus 188 La~EIi~A~~n---~G~aikKK~elHK~AeaNR 217 (225)
||+||++|++| +|.+|+||+|+||||+|||
T Consensus 168 LA~EiidAa~~~~~~g~AikKKee~hrmAeANR 200 (200)
T 2xzm_G 168 LADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR 200 (200)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCccCcchhhHHHHHHHHHhcC
Confidence 99999999999 9999999999999999998
No 8
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=100.00 E-value=6.1e-47 Score=326.63 Aligned_cols=165 Identities=24% Similarity=0.248 Sum_probs=143.8
Q ss_pred eeecccCCCCCCCCCChhHHhHHhhhcccCCCCccCCCCCCCCCCCC--------CccchHHHHHHHHHHh---------
Q psy4237 21 VRSASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCS--------TFYNPVKEKFINYMMK--------- 83 (225)
Q Consensus 21 ~~~s~y~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~ik~a~~~~t~~--------~~~d~lv~kfiN~lMk--------- 83 (225)
.+||.|++.|.||..++. +.++|...++|.+ .|+|++|++|||.||+
T Consensus 22 ~kws~~dv~v~dp~l~~y----------------i~~~p~~~Pht~gr~~~k~f~k~~~~iV~rliN~lM~~~~~~~~~~ 85 (218)
T 1iqv_A 22 GRWSTEDVEVKDPSLKPY----------------INLEPRLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVA 85 (218)
T ss_dssp TTBCCTTCCCCCTTTGGG----------------SBCSCC------------------CBHHHHHHHHHHTTCCC-----
T ss_pred ccccCCCCeecCCchhhh----------------cccCCccCCCcchHHHhhhcccccChHHHHHHhHhhhccccccccc
Confidence 579999999999987654 5556666666644 5678999999999999
Q ss_pred -----------cChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeE
Q psy4237 84 -----------KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTY 152 (225)
Q Consensus 84 -----------~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~y 152 (225)
+|||++|++||+.||++|+++ +++||++||++||+|++|.++++++++||.+|
T Consensus 86 ~~~~~~~~r~n~GKK~~A~~Iv~~Af~iI~~~----------------t~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~y 149 (218)
T 1iqv_A 86 GHFMRREHRSLNSKKVRAYEVVKEAFKIIEKR----------------TGKNPIQVLVWAIENAAPREDTTSVMFGGIRY 149 (218)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHH----------------HSSCHHHHHHHHHHHHSCSCEEEEEEETTEEE
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHHHHH----------------cCCCcHHHHHHHHHhCCCceEEEEeccCCEEE
Confidence 999999999999999999998 79999999999999999999999999999999
Q ss_pred EeecccChHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHcCCC--chhhhhHHHHHHHHHhc
Q psy4237 153 QVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILIDGADNKG--KVVKKKTDLHRQCEANR 217 (225)
Q Consensus 153 qVPvpi~~~rr~~lAikWLi~aar~k--~~~~~~~e~La~EIi~A~~n~G--~aikKK~elHK~AeaNR 217 (225)
||||+|++.||+++||+||+++|+++ ++.++|+++||+||++|++|+| .+|+||+|+||||+|||
T Consensus 150 qvPV~V~p~Rr~~lAirwI~~~ar~~~~R~~ksm~e~LA~Eii~Aa~~~g~s~AikKKee~hRmAeaNR 218 (218)
T 1iqv_A 150 HVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218 (218)
T ss_dssp EEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred EEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHhcC
Confidence 99999999999999999999999992 2366999999999999999986 99999999999999998
No 9
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=100.00 E-value=2.4e-46 Score=324.68 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=146.0
Q ss_pred cccCCCCccCCC-CCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhcccC
Q psy4237 47 NELKNYTDVPVK-PPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYNKAT 113 (225)
Q Consensus 47 ~d~~~~~~~~ik-~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~~~~ 113 (225)
.|++|..|+.++ |...++|.+.+ .||+|++|||+||++ |||++|++||+.||++|+.+
T Consensus 54 ~d~~l~~yi~~~~~~~~pht~gr~~~krf~K~~~piv~rliN~LM~~~~~~GKKs~A~~Ivy~AfeiI~~k--------- 124 (225)
T 3u5c_F 54 KDASLVDYVQVRQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVL--------- 124 (225)
T ss_dssp SSTTTBTTBCCCSCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHSCSGGGSSCHHHHHHHHHHHHHHHHHT---------
T ss_pred eccchhheeeccCCceecccCCCccccCCCCCCCcHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHh---------
Confidence 699999999999 88889998755 669999999999998 99999999999999999998
Q ss_pred CchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHH
Q psy4237 114 SDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQI 191 (225)
Q Consensus 114 ~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k--~~~~~~~e~La~E 191 (225)
+++||++||++||+||+|+++++.+..||.+||||++|++.||+++||+||+++|+++ ++.++|+++||+|
T Consensus 125 -------T~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~aark~~~R~~ksmaerLA~E 197 (225)
T 3u5c_F 125 -------TDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEE 197 (225)
T ss_dssp -------TCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred -------cCCCceeHHHHHHHhCCCCeeEEEeccCCEEEEEeeecCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 8999999999999999999998888888999999999999999999999999999993 2467999999999
Q ss_pred HHHHHcCCCc--hhhhhHHHHHHHHHhc
Q psy4237 192 LIDGADNKGK--VVKKKTDLHRQCEANR 217 (225)
Q Consensus 192 Ii~A~~n~G~--aikKK~elHK~AeaNR 217 (225)
||||++|+|. +|+||+|+||||+|||
T Consensus 198 LidAa~~~G~s~AiKKKee~HRmAeANR 225 (225)
T 3u5c_F 198 LINAAKGSSTSYAIKKKDELERVAKSNR 225 (225)
T ss_dssp HHHHHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcchhhHHHHHHHHHHHhcC
Confidence 9999999996 9999999999999998
No 10
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.4e-47 Score=327.27 Aligned_cols=156 Identities=21% Similarity=0.254 Sum_probs=148.2
Q ss_pred hcccCCCCccCC---CCCCCCCCCCCc--------cchHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHHHhhhhhc
Q psy4237 46 NNELKNYTDVPV---KPPTSFQTCSTF--------YNPVKEKFINYMMKK----GNKELAREVFEYTVKSIKRIQIEKYN 110 (225)
Q Consensus 46 ~~d~~~~~~~~i---k~a~~~~t~~~~--------~d~lv~kfiN~lMk~----GKK~~A~~iv~~al~~Ik~~q~~k~~ 110 (225)
-.|++|..|+.+ .|...++|.+.| +|++|++|||+||++ |||++|++||+.||++|+.+
T Consensus 30 v~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~Ivy~A~~~I~~k------ 103 (204)
T 2zkq_g 30 INDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLL------ 103 (204)
Confidence 379999999999 589999999988 479999999999999 99999999999999999987
Q ss_pred ccCCchhhhhcCCChHHHHHHHHHhcCCceeEEEEeeCCeeEEeecccChHHHHHHHHHHHHHHHhcC--CCCCCHHHHH
Q psy4237 111 KATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNL 188 (225)
Q Consensus 111 ~~~~~~~~~~~~~nPi~il~~AI~N~~P~~~l~~ik~GG~~yqVPvpi~~~rr~~lAikWLi~aar~k--~~~~~~~e~L 188 (225)
+++||++||++||+||+|+++++++++||.+||||++|++.||+++||+||+++|+++ ++.++|+++|
T Consensus 104 ----------t~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~L 173 (204)
T 2zkq_g 104 ----------TGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173 (204)
Confidence 7999999999999999999999999999999999999999999999999999999993 2367999999
Q ss_pred HHHHHHHHcCCCc--hhhhhHHHHHHHHHhc
Q psy4237 189 AQILIDGADNKGK--VVKKKTDLHRQCEANR 217 (225)
Q Consensus 189 a~EIi~A~~n~G~--aikKK~elHK~AeaNR 217 (225)
|+||++|++|+|. +|+||+|+||||+|||
T Consensus 174 A~ElidAa~~~g~s~AikKKee~hrmAeANR 204 (204)
T 2zkq_g 174 ADELINAAKGSSNSYAIKKKDELERVAKSNR 204 (204)
Confidence 9999999999997 9999999999999998
No 11
>4afm_A Endoglucanase CEL5A; hydrolase, carbohydrate binding module, family 5 glycoside H; HET: MSE; 1.25A {Eubacterium cellulosolvens}
Probab=36.49 E-value=5.7 Score=30.59 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=37.3
Q ss_pred ecccCCCCCC---CCCChhHHhHHhhhcccCCCCccCCCCCCCCCC
Q psy4237 23 SASFGPQFID---PIFKHEDIDRIIANNELKNYTDVPVKPPTSFQT 65 (225)
Q Consensus 23 ~s~y~~~~~~---p~~~~~~~~~~~~~~d~~~~~~~~ik~a~~~~t 65 (225)
|.+-.|+|+- -++.||+..|...++|.+-..|+-+||.|+...
T Consensus 72 waqispyyvvdgtavftkeqiakaygsddfs~ldyi~vkplps~~g 117 (134)
T 4afm_A 72 WAQISPYYVVDGTAVFTKEQIAKAYGSDDFSDLDYIGVKPLPSADG 117 (134)
T ss_dssp EEEECCSEEETTEEEEEHHHHHHHHTSSCCTTCCEEEEEECCCSSC
T ss_pred eeeecceEEEcceEEecHHHHHHHhCCCcccCcceEEeecCCcccC
Confidence 7888888863 478899999999999999999999999998654
No 12
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=36.26 E-value=31 Score=28.18 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhhhcCCChHHHHHHHHHhcCC
Q psy4237 79 NYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKP 138 (225)
Q Consensus 79 N~lMk~GKK~~A~~iv~~al~~Ik~~q~~k~~~~~~~~~~~~~~~nPi~il~~AI~N~~P 138 (225)
.+=.+.|+-.+|++|+-+++. ....|.++|..||.|+..
T Consensus 102 qFEiRqgnl~kARkILg~AiG---------------------~~~k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 102 QFELSQGNVKKSKQLLQKAVE---------------------RGAVPLEMLEIALRNLNL 140 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---------------------TTCBCHHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHhc---------------------cCCCcHHHHHHHHHhhhc
Confidence 344557888888888888876 245689999999999753
No 13
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=32.82 E-value=11 Score=29.21 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=38.3
Q ss_pred eeecccCCCCCC---CCCChhHHhHHhhhcccCCCCccCCCCCCCCCC
Q psy4237 21 VRSASFGPQFID---PIFKHEDIDRIIANNELKNYTDVPVKPPTSFQT 65 (225)
Q Consensus 21 ~~~s~y~~~~~~---p~~~~~~~~~~~~~~d~~~~~~~~ik~a~~~~t 65 (225)
--|.+-.|+|+- -++.||+..|...++|.+-..|+-+||.|+...
T Consensus 72 ~iwaqispyyvvdgtavftkeqiakaygsddfs~ldyi~vkplps~~g 119 (144)
T 4ba6_A 72 DIWAQISPYYVVDGTAVFTKEQIAKAYGSDDFSGLDYIAVKPLPSEEG 119 (144)
T ss_dssp TEEEEECCSEEETTEEEEEHHHHHHHHTCSCCTTCCEEEEEECSCSSC
T ss_pred hhhhhcCceEEEcceEEecHHHHHHHhCCCcccCcceEEeecCCcccC
Confidence 348888888863 478999999999999999999999999998754
No 14
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=31.89 E-value=12 Score=29.37 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=38.3
Q ss_pred eeecccCCCCCC---CCCChhHHhHHhhhcccCCCCccCCCCCCCCCC
Q psy4237 21 VRSASFGPQFID---PIFKHEDIDRIIANNELKNYTDVPVKPPTSFQT 65 (225)
Q Consensus 21 ~~~s~y~~~~~~---p~~~~~~~~~~~~~~d~~~~~~~~ik~a~~~~t 65 (225)
--|.+-.|+|+- -++.||+..|...++|..-..|+-+||.|+...
T Consensus 91 ~iwaqispyyvvdgtavftkeqiakaygsddfs~ldyi~vkplps~~g 138 (155)
T 2ypj_A 91 DIWAQISPYYVVDGTAVFTKEQIAKAYGSDDFSGLDYIAVKPLPSEEG 138 (155)
T ss_dssp TEEEEECCSEEETTEEEEEHHHHHHHHTSSCCTTCCEEEEEECSCSSC
T ss_pred hhhhhcCceEEEcceEEecHHHHHHHhCCCcccCcceEEeecCCcccC
Confidence 348888888863 478999999999999999999999999998653
No 15
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=24.50 E-value=80 Score=21.24 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCHHHH
Q psy4237 163 ARFKCMKWHIEIAKDK--PSEVRFSDN 187 (225)
Q Consensus 163 r~~lAikWLi~aar~k--~~~~~~~e~ 187 (225)
+.|--|+|||+.+|.+ ..+.+|..-
T Consensus 13 qKFEeIRwlIeE~Rh~Lk~TensfeQI 39 (58)
T 1pd3_A 13 QKFEEIRWLIEEVRHRLKITENSFEQI 39 (58)
T ss_dssp HHHHHHHHHHHHHHHTCCCCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 4577899999999984 445566543
No 16
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, Pro structure initiative; 1.70A {Shewanella oneidensis} SCOP: a.35.1.6
Probab=22.49 E-value=21 Score=28.44 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=24.8
Q ss_pred eeeeecceeecccCCCCCCCCCChhHHhH
Q psy4237 14 HHIFKTAVRSASFGPQFIDPIFKHEDIDR 42 (225)
Q Consensus 14 ~~~~~~~~~~s~y~~~~~~p~~~~~~~~~ 42 (225)
|-||.||--|.+|+|.|+--+.=-|-|..
T Consensus 87 fvvyptqa~y~qynpeflsslpltelynt 115 (166)
T 2ox6_A 87 FVVYPTQAIYTQYNPEFLSSLPLTELYNT 115 (166)
T ss_dssp EEECSSHHHHHHHCGGGTTTCCSHHHHHH
T ss_pred EEEcccHHHHHhcCHHHhccCcHHHHHhH
Confidence 67899999999999999998877776653
Done!