RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4237
(225 letters)
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus
thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G*
1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G
1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G
2zm6_G 3fic_G* 3mr8_G ...
Length = 151
Score = 98.8 bits (247), Expect = 2e-26
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 17/156 (10%)
Query: 69 FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
+ + + FIN +M+ G K LA +F Y + K IQ EK + +P +
Sbjct: 13 YGDVLVTAFINKIMRDGKKNLAARIF-Y--DACKIIQ-EKTGQ------------EPLKV 56
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
+A+EN KP +++RS + YQVP+ +S + + ++W ++ A + E R + +
Sbjct: 57 FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQR-PERRAAVRI 115
Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
A L+D A+ KG VKKK D+ R EANRAYAHY +
Sbjct: 116 AHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 151
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle,
cell division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Length = 149
Score = 98.8 bits (247), Expect = 2e-26
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 69 FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
F + + K IN +M G K +A+++ Y + I+ EK K DP +
Sbjct: 11 FGDVLVAKLINRVMWDGKKTIAQKIV-YG--AFDIIR-EKTKK------------DPLEV 54
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
+A+EN KP+L++R + TYQVPI + + ++W +E A+ K + L
Sbjct: 55 FRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAK-KGRPMKEKL 113
Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
A+ +I +N G +KKK D HR EANRA+AHY +
Sbjct: 114 AEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW 149
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G
3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G
3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G 1p87_G 2aw7_G
2avy_G ...
Length = 179
Score = 99.2 bits (248), Expect = 2e-26
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 17/156 (10%)
Query: 69 FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
F + + KF+N +M G K A + Y+ +++ + ++ K
Sbjct: 18 FGSELLAKFVNILMVDGKKSTAESIV-YS--ALETLA-QRSGK------------SELEA 61
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
+ A+EN +P ++++S + TYQVP+ + M+W +E A+ + + + L
Sbjct: 62 FEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRL 120
Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
A L D A+NKG VKK+ D+HR EAN+A+AHY +
Sbjct: 121 ANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW 156
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 155
Score = 98.4 bits (246), Expect = 2e-26
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 17/154 (11%)
Query: 69 FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
+ N + +N ++K G K LA ++ Y +++K+IQ +K +P +
Sbjct: 18 YRNRLVNMLVNRILKHGKKSLAYQIL-Y--RAVKKIQ-QKTET------------NPLSV 61
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
+ +AI P + +++ + T+QVPI I + + ++W + A+ K + L
Sbjct: 62 LRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAAR-KRPGRNMAFKL 120
Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHY 222
+ L+D A G V+KK + HR EANRA+AH+
Sbjct: 121 SSELVDAAKGSGDAVRKKEETHRMAEANRAFAHF 154
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A
{Geobacillus stearothermophilus} SCOP: a.75.1.1
Length = 155
Score = 98.4 bits (246), Expect = 2e-26
Identities = 43/156 (27%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 69 FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
+ + + + IN +M G K A+++ YT + I+ E+ K DP +
Sbjct: 17 YNSKLVTRLINKIMIDGKKSKAQKIL-YT--AFDIIR-ERTGK------------DPMEV 60
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
++A++N P+L++R+ + YQVP+ + ++W ++ A+ + +E + L
Sbjct: 61 FEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLR-NEKTMEERL 119
Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
A ++D A+N G VKK+ D H+ EAN+A+AHY +
Sbjct: 120 ANEIMDAANNTGAAVKKREDTHKMAEANKAFAHYRW 155
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G
3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G
4a2i_G 2gy9_G 2gyb_G
Length = 151
Score = 90.6 bits (226), Expect = 2e-23
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 69 FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
F + + KF+N +M G K A + Y+ +++ + ++ K
Sbjct: 17 FGSELLAKFVNILMVDGKKSTAESIV-YS--ALETLA-QRSGK------------SELEA 60
Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
+ A+EN +P ++++S + TYQVP+ + M+W +E A+ + + + L
Sbjct: 61 FEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRL 119
Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYA 220
A L D A+NKG VKK+ D+HR EAN+A+A
Sbjct: 120 ANELSDAAENKGTAVKKREDVHRMAEANKAFA 151
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protei complex; 8.70A {Canis
familiaris}
Length = 204
Score = 76.3 bits (188), Expect = 2e-17
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 76 KFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIEN 135
+ + G K + + ++ + I + +P ++ AI N
Sbjct: 75 SMMMHGRNNGKKLMTVRIVKHAFEIIH----LLTGE------------NPLQVLVNAIIN 118
Query: 136 TKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQILI 193
+ P I RA + + +S + + A++ + ++ LA LI
Sbjct: 119 SGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 178
Query: 194 DGADNKGKV--VKKKTDLHRQCEANR 217
+ A +KKK +L R ++NR
Sbjct: 179 NAAKGSSNSYAIKKKDELERVAKSNR 204
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 74.8 bits (184), Expect = 1e-16
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 76 KFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIEN 135
+ G K A + ++T+ I ++ +P ++ AI N
Sbjct: 96 SLMMNGRNNGKKLKAVRIIKHTLDIIN----VLTDQ------------NPIQVVVDAITN 139
Query: 136 TKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFSDNLAQILI 193
T P + + + +S + + A++ + ++ LA+ LI
Sbjct: 140 TGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELI 199
Query: 194 DGADNKGKV--VKKKTDLHRQCEANR 217
+ A +KKK +L R ++NR
Sbjct: 200 NAAKGSSTSYAIKKKDELERVAKSNR 225
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T
3j0l_T
Length = 200
Score = 73.1 bits (180), Expect = 3e-16
Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 25/155 (16%)
Query: 72 PVKEKFINYMM----KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYV 127
P+ E+ I +M G K L +V + + I + +P
Sbjct: 62 PIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIH----LVTGR------------NPLE 105
Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFS 185
+ A++N P I A V + + ++ + + I+ ++ S +
Sbjct: 106 VFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIA 165
Query: 186 DNLAQILIDGADNKGKV---VKKKTDLHRQCEANR 217
+ LA +I+ N + ++KK ++ + + NR
Sbjct: 166 ETLADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR 200
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn-
helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP:
a.75.1.1
Length = 218
Score = 71.3 bits (175), Expect = 2e-15
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 8/154 (5%)
Query: 72 PVKEKFINYMMKKGNKELAREVFEYTVKSI----KRIQIEKYNKATSDEERESIILDPYV 127
+ E+ IN +M+ G + K+++ + K + +P
Sbjct: 65 HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 124
Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKP--SEVRFS 185
++ AIEN P S+ + Y V + IS ++ A K +++ F+
Sbjct: 125 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 184
Query: 186 DNLAQILIDGADN--KGKVVKKKTDLHRQCEANR 217
+ LA+ +I A+ K KK ++ R E++R
Sbjct: 185 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 1e-04
Identities = 36/224 (16%), Positives = 63/224 (28%), Gaps = 93/224 (41%)
Query: 13 LHHIFKTAVRS-ASFGPQFIDPIFKHEDIDRIIANNELKNYTDVPVKPPTSFQTCSTFYN 71
+ +F VR ++ + P + ++ NNE P+
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLE----NNE---------GVPS---------- 336
Query: 72 PVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKY----NKATSDEERESIIL---- 123
M L+ + ++ + Q++ Y N ++ I L
Sbjct: 337 --------PM-------LS-------ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 124 DPYVIIDKAIENTKP-------ILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAK 176
V+ + P L LR K + Q IP S+++ +F
Sbjct: 375 KNLVV-------SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF----------- 416
Query: 177 DKPSEVRF--------SDNL--AQILIDGADNKGKVVKKKTDLH 210
RF S L A LI+ K V D+
Sbjct: 417 ----SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Score = 33.1 bits (75), Expect = 0.080
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 27/94 (28%)
Query: 79 NYMMKKGN-----KELAREVFEYTVKSIKR-----IQIEKYNKATSDEERESIILDPYVI 128
NY M N ++E +Y V+ + + ++I YN +++ YV
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN--VENQQ--------YVA 1855
Query: 129 ---IDKAIENTKPIL---KLRSIKRAAVTYQVPI 156
+ +A++ +L KL+ I + + +
Sbjct: 1856 AGDL-RALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 41/246 (16%), Positives = 77/246 (31%), Gaps = 69/246 (28%)
Query: 24 ASFGPQFIDPI-----FKHEDIDR---IIAN-------NELKNY--------TDVPVKPP 60
+ D + +KH + D+ II + E + + P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--P 388
Query: 61 TSFQTCSTFYNPVKEKFINYMMKKGNKE--LAREVFEYTVKSIKRIQIEKYNKATSDEER 118
T S + V + + ++ K +K + ++ E T+ SI I +E K ++
Sbjct: 389 T--ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYAL 445
Query: 119 ESIILDPYVIID------------------------KAIENTKPILKLRS---------- 144
I+D Y I K IE+ + + R
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 145 -IKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVV 203
I+ + + I + + K K + I + P R + + L +N +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEEN--LIC 561
Query: 204 KKKTDL 209
K TDL
Sbjct: 562 SKYTDL 567
Score = 37.9 bits (87), Expect = 0.002
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 17/146 (11%)
Query: 2 SNQMQVRSHISLHHIFKTAVRSASFG--PQFIDPIFKHEDIDRIIANNELKNYTDVPVKP 59
+ + Q + L V + I E+ID II + + + T
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR---- 66
Query: 60 PTSFQTCSTFYNPVKEKFINYMMKKGNKELAREV-FEYTVKSIKRIQIEKYNKATSDEER 118
F T + + +KF+ +++ K L + E S+ Y E+R
Sbjct: 67 --LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT---RMYI-----EQR 116
Query: 119 ESIILDPYVIIDKAIENTKPILKLRS 144
+ + D V + +P LKLR
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQ 142
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 29.2 bits (66), Expect = 1.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 12 SLHHIFKTAVRSASFGPQFIDPIFKHEDIDRIIANNEL 49
L +F + +F P+ PIF + R AN ++
Sbjct: 303 DLSSLFNASSGMWNFIPKIEIPIF---NAGRNQANLDI 337
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.4
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 99 KSIKRIQ--IEKYNKATSDEERESIILDPYVIIDKAIE 134
+++K++Q ++ Y ++ P + I +E
Sbjct: 20 QALKKLQASLKLYADDSA----------PALAIKATME 47
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 27.3 bits (61), Expect = 4.7
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 12 SLHHIFKTAVRSASFGPQFIDPIF 35
L +F S F P PIF
Sbjct: 312 QLSGLFDAGSGSWLFQPSINLPIF 335
>3nat_A Uncharacterized protein; alpha-beta half sandwich, structural
genomics, PSI-2, protei structure initiative; HET: CIT;
2.92A {Enterococcus faecalis}
Length = 164
Score = 26.5 bits (58), Expect = 5.7
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 59 PPTSFQTCSTFYNPVKEKF--------INYMMKKGNKELAREVFEYTVKSIKRIQIE 107
F+ FYNP K I Y KKG L + V + + +K + E
Sbjct: 64 EFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGKKG---LRKAVLDGFIHYLKVVLDE 117
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 27.1 bits (59), Expect = 5.9
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 76 KFINYMMKKGNKELAREVFEYTVKSIKRIQI 106
+I +K N + ++F+ + + I +
Sbjct: 51 LYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 81
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 27.1 bits (59), Expect = 6.1
Identities = 2/31 (6%), Positives = 9/31 (29%)
Query: 76 KFINYMMKKGNKELAREVFEYTVKSIKRIQI 106
+ + + +F +K + +
Sbjct: 19 EHARRLYMSKDYRSLESLFGRCLKKSYNLDL 49
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 26.2 bits (57), Expect = 7.6
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 87 KELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILK 141
+ +A E+ + + ++ E + D E ++ I++ D+ ++ +PI+
Sbjct: 28 EMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE-KDEDRLLDFMEPIMV 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.388
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,499,941
Number of extensions: 206563
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 38
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)