RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4237
         (225 letters)



>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
           [TaxId: 274]}
          Length = 145

 Score =  110 bits (276), Expect = 2e-31
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + + +   FIN +M+ G K LA  +F                       +E    +P  +
Sbjct: 7   YGDVLVTAFINKIMRDGKKNLAARIFYDAC----------------KIIQEKTGQEPLKV 50

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
             +A+EN KP +++RS +     YQVP+ +S +  +   ++W ++ A  +  E R +  +
Sbjct: 51  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQR-PERRAAVRI 109

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYAHYYF 224
           A  L+D A+ KG  VKKK D+ R  EANRAYAHY +
Sbjct: 110 AHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 145


>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
           [TaxId: 562]}
          Length = 150

 Score =  101 bits (254), Expect = 4e-28
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           F + +  KF+N +M  G K  A  +    ++       ++  K                 
Sbjct: 16  FGSELLAKFVNILMVDGKKSTAESIVYSALE----TLAQRSGK------------SELEA 59

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
            + A+EN +P ++++S +    TYQVP+ +         M+W +E A+ +  +   +  L
Sbjct: 60  FEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRL 118

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEANRAYA 220
           A  L D A+NKG  VKK+ D+HR  EAN+A+A
Sbjct: 119 ANELSDAAENKGTAVKKREDVHRMAEANKAFA 150


>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 139

 Score = 93.8 bits (233), Expect = 4e-25
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 17/148 (11%)

Query: 69  FYNPVKEKFINYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVI 128
           + + +  + IN +M  G K  A+++       I+    E+  K            DP  +
Sbjct: 9   YNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIR----ERTGK------------DPMEV 52

Query: 129 IDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNL 188
            ++A++N  P+L++R+ +     YQVP+ +         ++W ++ A+ + +E    + L
Sbjct: 53  FEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLR-NEKTMEERL 111

Query: 189 AQILIDGADNKGKVVKKKTDLHRQCEAN 216
           A  ++D A+N G  VKK+ D H+  EAN
Sbjct: 112 ANEIMDAANNTGAAVKKREDTHKMAEAN 139


>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score = 76.1 bits (187), Expect = 9e-18
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 72  PVKEKFINYMMKKGNKELAREVFEYTVKSI----KRIQIEKYNKATSDEERESIILDPYV 127
            + E+ IN +M+ G             +      K+++  +  K       +    +P  
Sbjct: 48  HIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQ 107

Query: 128 IIDKAIENTKPILKLRSIKRAAVTYQVPIPISDKEARFKCMKWHIEIAKD--KPSEVRFS 185
           ++  AIEN  P     S+    + Y V + IS        ++     A      +++ F+
Sbjct: 108 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFA 167

Query: 186 DNLAQILIDGADN--KGKVVKKKTDLHRQCEANR 217
           + LA+ +I  A+   K     KK ++ R  E++R
Sbjct: 168 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 201


>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 122

 Score = 25.0 bits (54), Expect = 5.5
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 78  INYMMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYV 127
           +      GN     E+ E  + S   +   K N  +    R+  I   Y+
Sbjct: 68  LLLAKNIGNA-GFNEIMECCLPSEDPV---KPNPGSDMIARKDYITAKYM 113


>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           erythrocytes, isozyme I [TaxId: 9606]}
          Length = 258

 Score = 25.2 bits (54), Expect = 7.1
 Identities = 10/72 (13%), Positives = 23/72 (31%)

Query: 151 TYQVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLH 210
             Q P+ I   E +       I ++ +  +     +      ++  DN  + V K     
Sbjct: 24  NNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDNRSVLKGGPFS 83

Query: 211 RQCEANRAYAHY 222
                 + + H+
Sbjct: 84  DSYRLFQFHFHW 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 869,092
Number of extensions: 41671
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 16
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)