BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4238
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55935|RS9_DROME 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=2
SV=2
Length = 195
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/45 (91%), Positives = 42/45 (93%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRK 53
RVRKQVVNIPSFVVRLDSQKHIDFSL SPFGGG GRVKRKNL+K
Sbjct: 137 RVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKK 181
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4
Length = 194
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
RVRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 136 RVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1
Length = 194
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
RVRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 136 RVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3
Length = 194
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
RVRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 136 RVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
Length = 194
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
RVRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 136 RVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1
Length = 194
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
RVRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 136 RVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3
SV=1
Length = 189
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 4/59 (6%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
RVR+QVV++PSF+VRLDSQKHIDFSL SP+GGG GRVKR+ LRK + +DEE
Sbjct: 135 RVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDGAGG----DDEE 189
>sp|Q9LXG1|RS91_ARATH 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1
SV=1
Length = 198
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 43/51 (84%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAA 59
RV KQ+VNIPSF+VRLDSQKHIDF+L SPFGGG GRVKR+N + A+ A+
Sbjct: 137 RVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKAS 187
>sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9a PE=1 SV=2
Length = 191
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 39/44 (88%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLR 52
RV KQ+VN+PSFVVRLD+QKHIDF+L+SP+GGG GR KRK LR
Sbjct: 135 RVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178
>sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2
SV=1
Length = 197
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAA 59
RV +Q+VNIPSF+VR++SQKH+DFSL SPFGGG GRVKR+N R A A+
Sbjct: 137 RVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKAS 187
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9b PE=1 SV=3
Length = 192
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 39/44 (88%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLR 52
RV KQ+VN+PSFVVRLD+QKHIDF+L+SP+GGG GR KRK LR
Sbjct: 135 RVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLR 178
>sp|P49214|RS9_TOBAC 40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9
PE=3 SV=1
Length = 77
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 38/42 (90%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKN 50
RV +QVVN+PSF+VRLDSQKHIDFSL SPFGGG GRVKRKN
Sbjct: 17 RVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58
>sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9A PE=1 SV=3
Length = 197
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 12 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKN-LRKAASS 57
KQ+VNIPSF+VRLDS+KHIDF+ SPFGG GRV R+N RKA +S
Sbjct: 138 KQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKAEAS 184
>sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9B PE=1 SV=4
Length = 195
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 12 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKN 50
KQ+VNIPSF+VRLDS+KHIDF+ SPFGG GRV R+N
Sbjct: 138 KQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1
Length = 190
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
RV KQ+VN+PSFVVRLDSQKHIDF+L SPFGGG GRV+RK KAA AEEDEE
Sbjct: 133 RVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKKA-KAAEGGDGDAEEDEE 190
>sp|P17959|RS9_TRYBB Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3
SV=1
Length = 190
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 10 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDE 66
V KQ+V IPSF+VR+ S+ HI F+ SPFG G GRVKR R AA + ++DE
Sbjct: 135 VAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKRVK-RNAAKKGSGGGDDDE 190
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1
SV=1
Length = 185
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEED 65
RV KQ+VN+PSF+VR++SQKH+ + SP GG GR RK A + ++ EE+
Sbjct: 132 RVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGR----RARKMAKNNSSKGEEE 184
>sp|Q25555|RS9_NAEFO 40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1
Length = 186
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 7/52 (13%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFG----GGGAGRVKRKNLRKAAS 56
RV KQ VN+PSF+VR+DS+KHI+ SPF GG GR+ RK L+ S
Sbjct: 137 RVGKQTVNVPSFIVRVDSEKHINM---SPFSALVQGGKPGRMTRKKLKSQKS 185
>sp|O15612|RS9_ENTHI 40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2
SV=2
Length = 185
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 9 RVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGA-GRVKRKN 50
+V KQVV++PSF+VR++S+ I + N+P GR KRKN
Sbjct: 135 KVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177
>sp|Q8SRW6|RS9_ENCCU 40S ribosomal protein S9 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS9 PE=1 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 10 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRK 49
++ Q+V++P F+VR D + I+++ S +G G + + K
Sbjct: 141 IKDQIVDVPGFMVRADKEPLIEYNPYSRYGDKGKKKAEAK 180
>sp|Q5SJH6|TRMD_THET8 tRNA (guanine-N(1)-)-methyltransferase OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=trmD PE=3 SV=1
Length = 239
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 6 EIGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEE 64
E G +R +VV++ +F L + +D ++P+GGG AG V R ++ AA A PA+E
Sbjct: 27 ERGLIRVEVVDLRAF--GLGRHRTVD---DTPYGGG-AGMVIRPDVAVAALERALPADE 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,397,674
Number of Sequences: 539616
Number of extensions: 895299
Number of successful extensions: 2757
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2729
Number of HSP's gapped (non-prelim): 37
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)