Query psy4238
Match_columns 67
No_of_seqs 105 out of 232
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:21:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_C 40S ribosomal protein S 99.8 8.5E-23 2.9E-27 143.6 -0.0 66 2-67 130-195 (195)
2 3u5c_J 40S ribosomal protein S 99.8 1.6E-21 5.6E-26 137.2 0.3 54 2-55 128-181 (197)
3 2xzm_D Ribosomal protein S4 co 99.6 1E-15 3.5E-20 105.8 2.4 53 2-54 128-180 (181)
4 3j20_D 30S ribosomal protein S 99.1 4.4E-12 1.5E-16 87.9 -0.6 51 2-52 124-175 (180)
5 2cqj_A BRMS2, U3 small nucleol 99.0 5.7E-11 2E-15 70.9 1.1 41 2-42 29-69 (71)
6 3bbn_D Ribosomal protein S4; s 97.5 1.8E-05 6.1E-10 55.3 1.0 33 2-36 110-142 (201)
7 1c05_A Ribosomal protein S4 de 97.1 0.00012 4.1E-09 48.7 1.0 32 3-36 73-104 (159)
8 2vqe_D 30S ribosomal protein S 97.1 0.00012 4.2E-09 50.8 1.0 32 3-36 121-152 (209)
9 3r8n_D 30S ribosomal protein S 96.9 5.9E-05 2E-09 52.9 -1.8 31 3-35 117-147 (205)
10 1dm9_A Hypothetical 15.5 KD pr 92.5 0.03 1E-06 36.0 0.6 24 3-27 31-54 (133)
11 3j20_E 30S ribosomal protein S 92.4 0.033 1.1E-06 40.1 0.7 22 3-24 66-87 (243)
12 3kbg_A 30S ribosomal protein S 91.8 0.046 1.6E-06 38.7 0.9 23 3-25 31-53 (213)
13 2k6p_A Uncharacterized protein 90.7 0.034 1.2E-06 32.8 -0.6 29 3-34 23-51 (92)
14 4hsp_A Hypothetical protein; P 89.9 0.11 3.6E-06 35.1 1.3 31 9-40 51-84 (150)
15 1p9k_A ORF, hypothetical prote 89.2 0.037 1.3E-06 32.1 -1.2 29 3-33 43-71 (79)
16 1ksk_A Ribosomal small subunit 86.2 0.33 1.1E-05 32.7 1.8 29 3-33 25-53 (234)
17 3hp7_A Hemolysin, putative; st 85.5 0.21 7.3E-06 35.6 0.7 36 3-40 29-67 (291)
18 1vio_A Ribosomal small subunit 85.3 0.38 1.3E-05 32.7 1.8 29 3-33 24-52 (243)
19 3dh3_A Ribosomal large subunit 70.3 1.7 5.9E-05 30.9 1.5 28 3-33 28-55 (290)
20 1v9f_A Ribosomal large subunit 70.2 0.9 3.1E-05 32.1 0.0 30 2-33 38-67 (325)
21 2q5w_D Molybdopterin convertin 62.4 12 0.0004 20.6 3.7 30 7-41 48-77 (77)
22 1fm0_D Molybdopterin convertin 56.1 17 0.00058 20.0 3.7 29 7-40 52-80 (81)
23 3u5c_J 40S ribosomal protein S 55.1 4.4 0.00015 28.0 1.3 26 39-64 168-193 (197)
24 3po0_A Small archaeal modifier 49.7 23 0.00077 20.0 3.6 29 7-40 60-88 (89)
25 1rws_A Hypothetical protein PF 48.0 14 0.00048 20.8 2.5 28 8-40 49-76 (77)
26 1tyg_B YJBS; alpha beta barrel 46.5 14 0.00047 22.1 2.3 27 8-34 55-82 (87)
27 3gmg_A Uncharacterized protein 40.6 11 0.00038 25.4 1.4 32 7-38 68-104 (170)
28 1vjk_A Molybdopterin convertin 38.2 15 0.00053 21.4 1.6 29 7-40 69-97 (98)
29 2o8m_C Protease; NS3, NS4A, vi 34.6 12 0.00042 18.5 0.7 17 3-19 6-22 (26)
30 2cu3_A Unknown function protei 32.2 44 0.0015 17.9 2.8 27 8-34 32-59 (64)
31 2g1e_A Hypothetical protein TA 30.7 27 0.00094 19.4 1.8 31 7-41 57-90 (90)
32 1tq5_A Protein YHHW; bicupin, 30.7 62 0.0021 22.2 3.9 33 2-35 186-218 (242)
33 2zai_A Oligosaccharyl transfer 30.3 17 0.0006 28.5 1.2 30 2-32 352-381 (497)
34 4egx_A Kinesin-like protein KI 28.6 18 0.00062 24.0 0.9 41 7-50 141-181 (184)
35 4ejq_A Kinesin-like protein KI 27.9 22 0.00074 22.7 1.1 38 8-48 112-149 (154)
36 1f0z_A THis protein; ubiquitin 26.7 22 0.00077 19.2 0.9 27 8-34 34-61 (66)
37 2vec_A YHAK, pirin-like protei 23.9 65 0.0022 22.4 3.1 33 2-35 207-244 (256)
38 2qjl_A URM1, ubiquitin-related 21.0 72 0.0024 18.5 2.5 31 7-41 66-99 (99)
39 2l52_A Methanosarcina acetivor 20.4 41 0.0014 19.7 1.3 30 7-40 66-98 (99)
No 1
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.84 E-value=8.5e-23 Score=143.59 Aligned_cols=66 Identities=61% Similarity=0.876 Sum_probs=60.2
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEeecCCCCCCCCcchhhhhhhhhhhccCCCCCCcccC
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAASSAAAPAEEDEE 67 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~~pgRvkrk~~k~~~~~~~~~~~~~~~ 67 (67)
.|.||||.|||++|++|||+|+.++|.+|+|+.+|||++++|||+|||+++++++++++++|||||
T Consensus 130 lI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~~~spyv~~~~gr~~rk~~~~~~~~~~~~~~~~~~ 195 (195)
T 3iz6_C 130 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDEE 195 (195)
T ss_dssp HHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSSSCCCCCCCCCCHHHHHHHHTTTSSSSCCCCCCCC
T ss_pred HHHcCCEEECCEEeCCCCcCcCCCCEEEEEecCCCCCCCCCchhHHHHHHhhccCCCCCccccccC
Confidence 488999999999999999999999999999999999999999999999999987776666666654
No 2
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=99.81 E-value=1.6e-21 Score=137.22 Aligned_cols=54 Identities=57% Similarity=0.827 Sum_probs=51.6
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEeecCCCCCCCCcchhhhhhhhhhh
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKAA 55 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~~pgRvkrk~~k~~~ 55 (67)
.|.||||.|||++|+.|||+|+.++|++|.|..+|||.+++|||+|||++|+++
T Consensus 128 LI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~spyvs~~~gr~~rk~~~~~~ 181 (197)
T 3u5c_J 128 LITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKA 181 (197)
T ss_dssp HHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSSSSSSSSCCCHHHHHHHHHHH
T ss_pred HHHcCCEEECCEEeCCCccccCCCCccEEEEcCCCCCcCCCchhHHHHHHHhhc
Confidence 488999999999999999999999999999999999999999999999999864
No 3
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=99.55 E-value=1e-15 Score=105.78 Aligned_cols=53 Identities=53% Similarity=0.782 Sum_probs=49.7
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEeecCCCCCCCCcchhhhhhhhhh
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKNLRKA 54 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~~pgRvkrk~~k~~ 54 (67)
.|.||||.|||++|+.|||+|..+.++.|.|...|||.+++|||+||||++++
T Consensus 128 LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~~~s~~~~~~~~r~~~~~~~~~ 180 (181)
T 2xzm_D 128 LIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFASTSPLGGGREGRTKRKNAKKS 180 (181)
T ss_dssp HTTTTCCEETTEECCCSCCBCCSTTSSCEECTTSTTTTTCCSHHHHHHHHHC-
T ss_pred HHHCCEEEECCEEECCCCcCCCCCCceEEEEeCCCccCCCCCchhhhhhhccC
Confidence 37899999999999999999999999999999999999999999999998865
No 4
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.12 E-value=4.4e-12 Score=87.89 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=46.6
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEeecCCCCCCCC-cchhhhhhhh
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGG-AGRVKRKNLR 52 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~~-pgRvkrk~~k 52 (67)
.|.||||.|||++|+.|||+|..++|+.|.|..+|||.++. |+|.-.-++|
T Consensus 124 LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~s~i~~~~~~~~~~~~~~~ 175 (180)
T 3j20_D 124 LIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAK 175 (180)
T ss_dssp HHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSCSSSSSSCCHHHHHHHHCC
T ss_pred HHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCCCcccCCCCCcchhHHHHh
Confidence 47899999999999999999999999999999999999988 9998776544
No 5
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.7e-11 Score=70.90 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=37.9
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEeecCCCCCCCC
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGG 42 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~~ 42 (67)
.|.||||.|||++|+.|||+|..++++.|.|...||+....
T Consensus 29 lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~~~~~~~~~ 69 (71)
T 2cqj_A 29 FVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKISGPS 69 (71)
T ss_dssp HHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSCCCC
T ss_pred HHHCCcEEECCEEECCCCCCCCCCCCcEEEEECCceecccc
Confidence 47899999999999999999999999999999999998653
No 6
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.55 E-value=1.8e-05 Score=55.25 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=27.4
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEeecCC
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNS 36 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~S 36 (67)
.|.||||.|||++|++|||.|..+ +.|.+...+
T Consensus 110 LI~~G~V~VNG~~V~~pS~~V~~g--D~I~V~~~~ 142 (201)
T 3bbn_D 110 LVNHRHILVNGRIVDIPSYRCKPQ--DTIMARDEQ 142 (201)
T ss_dssp HHHTTCEEETTEECCCTTCBCCTT--EEEEECSST
T ss_pred HHhCCcEEeCCEEEeecceecCCC--CEEEEcccc
Confidence 378999999999999999999764 578776543
No 7
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.10 E-value=0.00012 Score=48.68 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=27.2
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEeecCC
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNS 36 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~S 36 (67)
|.||||.|||++|+.|+|.|.. .+.|.+...|
T Consensus 73 I~~G~V~VNG~~v~~ps~~V~~--gD~I~V~~~~ 104 (159)
T 1c05_A 73 VTHGHILVDGSRVNIPSYRVKP--GQTIAVREKS 104 (159)
T ss_dssp HHTTCEEETTEECCCSSCBCCT--TCEEEECGGG
T ss_pred HHCCCEEECCEEeCcCCcEeCC--CCEEEEeCce
Confidence 7899999999999999999876 4578887654
No 8
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.09 E-value=0.00012 Score=50.76 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=27.5
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEeecCC
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLNS 36 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~S 36 (67)
|.||||.|||++|+.|||.|.. .+.|.+...|
T Consensus 121 I~~G~V~VNG~~v~~ps~~V~~--gD~I~V~~~~ 152 (209)
T 2vqe_D 121 VRHGHITVNGRRVDLPSYRVRP--GDEIAVAEKS 152 (209)
T ss_dssp HHTTCEEETTEECCCTTCBCCT--TCEEEECGGG
T ss_pred HHCCCEEECCEEeCcCCcCcCC--CCEEEEcCcc
Confidence 7899999999999999999875 5678887664
No 9
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=96.92 E-value=5.9e-05 Score=52.87 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=25.8
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEeecC
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLN 35 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~ 35 (67)
|.||||.|||++|+.|||.|..+ +.|.+...
T Consensus 117 I~~G~V~VNG~~V~~ps~~Vk~G--D~I~V~~~ 147 (205)
T 3r8n_D 117 VSHKAIMVNGRVVNIASYQVSPN--DVVSIREK 147 (205)
T ss_dssp HHTTCCBSSSSBCCCTTCBCCTT--BCCBCCSS
T ss_pred HHCCCEEECCEEEccCCcCcCCC--CEEEecCc
Confidence 78999999999999999999876 55666543
No 10
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=92.51 E-value=0.03 Score=36.01 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=20.2
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCC
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQ 27 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE 27 (67)
|-+|+|.|||+++ .|++.|....+
T Consensus 31 i~~G~V~VNG~~v-k~s~~V~~GD~ 54 (133)
T 1dm9_A 31 IEGGKVHYNGQRS-KPSKIVELNAT 54 (133)
T ss_dssp HHTTCEEETTEEC-CTTCBCCTTCE
T ss_pred HHCCcEEECCEEc-CCCCEeCCCCE
Confidence 5689999999998 79999877644
No 11
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.36 E-value=0.033 Score=40.09 Aligned_cols=22 Identities=18% Similarity=-0.068 Sum_probs=19.8
Q ss_pred eeeeeEEECCEEeccCCeeEEc
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRL 24 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~ 24 (67)
+.||||.|||++++.|+|-|..
T Consensus 66 v~~~~I~VdGKvr~d~~ypvG~ 87 (243)
T 3j20_E 66 LNEGKFLVDGRVRKDYKFPVGI 87 (243)
T ss_dssp HHHCSCEETTEECCCSSCEECT
T ss_pred HHCCcEEECCEEeccccCCccc
Confidence 5699999999999999998765
No 12
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=91.79 E-value=0.046 Score=38.66 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.9
Q ss_pred eeeeeEEECCEEeccCCeeEEcC
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLD 25 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~d 25 (67)
+.||||.|||++++.|+|-|..-
T Consensus 31 v~~~~I~VDGKvr~d~~ypvG~m 53 (213)
T 3kbg_A 31 LANGLVKVDGKTVREKKFAVGFM 53 (213)
T ss_dssp HHTTCEEETTEECCCTTCEECTT
T ss_pred HHCCCEEECCEEecccCCCccce
Confidence 56999999999999999976653
No 13
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=90.68 E-value=0.034 Score=32.78 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=22.7
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEeec
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSL 34 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~ 34 (67)
|-+|.|.|||+.+ .|+|.|... +.|.+..
T Consensus 23 i~~G~V~VNg~~~-~~~~~v~~g--d~I~v~~ 51 (92)
T 2k6p_A 23 CNVGAVWLNGSCA-KASKEVKAG--DTISLHY 51 (92)
T ss_dssp HHHTCCEETTEEC-CTTCBCCTT--CEEEECC
T ss_pred HHCCcEEECCEEc-CCCCCcCCC--CEEEEEe
Confidence 5689999999998 699998755 4566653
No 14
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=89.92 E-value=0.11 Score=35.08 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=21.8
Q ss_pred EECCEEeccCCeeEEcCCC--Cc-eEeecCCCCCC
Q psy4238 9 RVRKQVVNIPSFVVRLDSQ--KH-IDFSLNSPFGG 40 (67)
Q Consensus 9 aV~gq~V~~PsylVr~deE--~~-Idf~~~SPl~~ 40 (67)
++||+.|.+|+|+|.++.. .. -+|.. .|+.+
T Consensus 51 ~LdGk~VripGfvvPLe~~~~~~vteFlL-VPy~G 84 (150)
T 4hsp_A 51 ALDGIEAKLPGYIVPLEISEAGLVTEFLL-VPYYG 84 (150)
T ss_dssp GGTTEEEEEEEEEEEEEECTTSEEEEEEE-ESSTT
T ss_pred hhCCCEEEeccEEEEeccCCCCcEEEEEE-eCCCC
Confidence 3689999999999999954 33 55543 34443
No 15
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=89.24 E-value=0.037 Score=32.11 Aligned_cols=29 Identities=14% Similarity=0.089 Sum_probs=22.7
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEee
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFS 33 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~ 33 (67)
|-.|.|.|||++++.|++.|..+ +.|.+.
T Consensus 43 I~~G~V~VNG~~v~~~~~~v~~g--d~I~v~ 71 (79)
T 1p9k_A 43 IAEGQVKVDGAVETRKRCKIVAG--QTVSFA 71 (79)
T ss_dssp HHHHHHEETTBCCCCSSCCCCSS--EEEEET
T ss_pred HHCCEEEECCEEecCCCCCCCCC--CEEEEC
Confidence 55799999999999999988633 456553
No 16
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=86.15 E-value=0.33 Score=32.69 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=23.3
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEee
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFS 33 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~ 33 (67)
|-.|.|.|||++|+.|++.|... +.|.+.
T Consensus 25 i~~G~V~VNG~~v~~~~~~v~~g--D~I~v~ 53 (234)
T 1ksk_A 25 IRGNRVTVDGEIVRNAAFKLLPE--HDVAYD 53 (234)
T ss_dssp HHTTCEEETTEECCCTTCEECTT--CCEEET
T ss_pred HHcCeEEECCEEeCCCCCCCCCC--CEEEEe
Confidence 55799999999999899998755 466664
No 17
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=85.47 E-value=0.21 Score=35.64 Aligned_cols=36 Identities=3% Similarity=-0.086 Sum_probs=28.0
Q ss_pred eeeeeEEECC-E-EeccCCeeEEcCCCCceEeecC-CCCCC
Q psy4238 3 IVWEIGRVRK-Q-VVNIPSFVVRLDSQKHIDFSLN-SPFGG 40 (67)
Q Consensus 3 IvHGHIaV~g-q-~V~~PsylVr~deE~~Idf~~~-SPl~~ 40 (67)
|-.|+|.||| + +|+.|++.|..+ +.|.+... .||-.
T Consensus 29 I~~G~V~Vng~~~~v~kp~~~V~~~--d~I~v~g~~~~yvs 67 (291)
T 3hp7_A 29 VMAGLVVNVINGERYDKPGEKIDDG--TELKLKGEKLRYVS 67 (291)
T ss_dssp HHTTCEEETTTCCBCCCTTCEEETT--CCEEETTCCCCSSS
T ss_pred HHCCeEEECCeEEEEccCCCCCCCC--CEEEEccccccccc
Confidence 6789999999 8 899999999876 56777644 35554
No 18
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=85.32 E-value=0.38 Score=32.69 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=23.1
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEee
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFS 33 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~ 33 (67)
|-.|.|.|||++|+.|++.|.... .|.+.
T Consensus 24 I~~G~V~VNG~~v~~~~~~v~~gD--~I~v~ 52 (243)
T 1vio_A 24 IRQSAVKINGEIVKSGSVQISQED--EIYFE 52 (243)
T ss_dssp HHTTCEEETTEECCCTTCEECTTS--CEEET
T ss_pred HHcCcEEECCEEeCCCCCCcCCCC--EEEEe
Confidence 457899999999988999887654 66664
No 19
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=70.29 E-value=1.7 Score=30.91 Aligned_cols=28 Identities=7% Similarity=-0.152 Sum_probs=22.1
Q ss_pred eeeeeEEECCEEeccCCeeEEcCCCCceEee
Q psy4238 3 IVWEIGRVRKQVVNIPSFVVRLDSQKHIDFS 33 (67)
Q Consensus 3 IvHGHIaV~gq~V~~PsylVr~deE~~Idf~ 33 (67)
|-.|.|.|||++| .|++.|.. .+.|.+.
T Consensus 28 I~~G~V~VNG~~v-~~~~~V~~--gD~I~v~ 55 (290)
T 3dh3_A 28 IEQGNVFLNGKRA-TIGDQVKP--GDVVKVN 55 (290)
T ss_dssp HHTTCEEETTEEC-CTTCEECT--TCCEEET
T ss_pred HHCCCEEECCEEc-cCCcCcCC--CCEEEec
Confidence 5579999999999 69998765 3666665
No 20
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=70.24 E-value=0.9 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=0.0
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEee
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFS 33 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~ 33 (67)
.|-.|.|.|||++|..|++.|..+. .|.+.
T Consensus 38 lI~~G~V~VNG~~v~~~~~~v~~gD--~I~v~ 67 (325)
T 1v9f_A 38 WILDQRVLVNGKVCDKPKEKVLGGE--QVAIN 67 (325)
T ss_dssp --------------------------------
T ss_pred HHHCCCEEECCEEccCCCCEeCCCC--EEEEe
Confidence 3678999999999888999987654 45443
No 21
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=62.41 E-value=12 Score=20.56 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEECCEEeccCCeeEEcCCCCceEeecCCCCCCC
Q psy4238 7 IGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 41 (67)
Q Consensus 7 HIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~ 41 (67)
-|+|||+.|+ ++. .+.+.+.|+|.+ |++++
T Consensus 48 ~v~vNg~~v~-~~~--~L~~gD~V~i~p--pv~GG 77 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSD--FIQPNDTVALIP--PVSGG 77 (77)
T ss_dssp EEEETTEEEC-TTS--EECTTCEEEEEC--SCCCC
T ss_pred EEEECCEECC-CCC--CcCCCCEEEEEC--CCCCC
Confidence 4899999997 453 566677788875 55553
No 22
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=56.12 E-value=17 Score=20.02 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=20.2
Q ss_pred eEEECCEEeccCCeeEEcCCCCceEeecCCCCCC
Q psy4238 7 IGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGG 40 (67)
Q Consensus 7 HIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~ 40 (67)
-|+|||+.|. +.. .+.+.+.|.|.+ |+++
T Consensus 52 ~v~vN~~~v~-~~~--~l~~gD~V~i~P--pv~G 80 (81)
T 1fm0_D 52 LAAVNQTLVS-FDH--PLTDGDEVAFFP--PVTG 80 (81)
T ss_dssp EEEETTEECC-TTC--BCCTTCEEEEEC--CCCC
T ss_pred EEEECCEECC-CCC--CCCCCCEEEEeC--CCCC
Confidence 4899999986 554 355667788865 5554
No 23
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=55.06 E-value=4.4 Score=28.05 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=11.8
Q ss_pred CCCCcchhhhhhhhhhhccCCCCCCc
Q psy4238 39 GGGGAGRVKRKNLRKAASSAAAPAEE 64 (67)
Q Consensus 39 ~~~~pgRvkrk~~k~~~~~~~~~~~~ 64 (67)
.-++-.|++-|++..+.+++++++||
T Consensus 168 ~~gr~~rk~~~~~~~~~~~~~~~~~~ 193 (197)
T 3u5c_J 168 RPGRVARRNAARKAEASGEAADEADE 193 (197)
T ss_dssp CCCHHHHHHHHHHHHHTCC-------
T ss_pred CchhHHHHHHHhhcccCCCCCccccc
Confidence 45676677666665556655544443
No 24
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=49.69 E-value=23 Score=20.01 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=20.7
Q ss_pred eEEECCEEeccCCeeEEcCCCCceEeecCCCCCC
Q psy4238 7 IGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGG 40 (67)
Q Consensus 7 HIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~ 40 (67)
.|+|||+.|. +.+ .+.+-+.|.|.| |+++
T Consensus 60 ~v~VN~~~v~-~~~--~l~~gDeV~i~P--pv~G 88 (89)
T 3po0_A 60 NVLRNGEAAA-LGE--ATAAGDELALFP--PVSG 88 (89)
T ss_dssp EEEETTEECC-TTS--BCCTTCEEEEEC--CCSC
T ss_pred EEEECCEECC-CCc--ccCCCCEEEEEC--CCCC
Confidence 6899999987 454 356677888876 4544
No 25
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=47.95 E-value=14 Score=20.84 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEECCEEeccCCeeEEcCCCCceEeecCCCCCC
Q psy4238 8 GRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGG 40 (67)
Q Consensus 8 IaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~ 40 (67)
|+|||+.|. ++ ..+.+-+.|+|.+ |+++
T Consensus 49 VavNg~~v~-~~--~~L~dGD~V~i~p--pv~G 76 (77)
T 1rws_A 49 AKVNGKVVL-ED--DEVKDGDFVEVIP--VVSG 76 (77)
T ss_dssp EEETTEEEC-SS--SCCCSSCCCBCSC--CCCC
T ss_pred EEECCEECC-CC--CCcCCCCEEEEEc--cccc
Confidence 789999987 45 3566677777764 4444
No 26
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=46.55 E-value=14 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=14.7
Q ss_pred EEECCEEeccCCee-EEcCCCCceEeec
Q psy4238 8 GRVRKQVVNIPSFV-VRLDSQKHIDFSL 34 (67)
Q Consensus 8 IaV~gq~V~~Psyl-Vr~deE~~Idf~~ 34 (67)
|+|||+.|....|- ..+.+.+.|+|.+
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 56666666543332 3455556666654
No 27
>3gmg_A Uncharacterized protein RV1825/MT1873; structural genomics, unknown function, cell membrane, membrane, transmembrane, PSI-2; 1.50A {Mycobacterium tuberculosis}
Probab=40.61 E-value=11 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=20.7
Q ss_pred eEEECC----EEeccCCeeEEcCCCCceEeec-CCCC
Q psy4238 7 IGRVRK----QVVNIPSFVVRLDSQKHIDFSL-NSPF 38 (67)
Q Consensus 7 HIaV~g----q~V~~PsylVr~deE~~Idf~~-~SPl 38 (67)
-|+||| |||..-|++.-...-=.|+..+ .+||
T Consensus 68 AIsIng~~~~~Ri~~~S~Ir~~g~~i~vdg~~~~~Py 104 (170)
T 3gmg_A 68 AIQINDAHRSVRVGVDTWVVGVPGSLTVDTKVLSPPY 104 (170)
T ss_dssp EEEEECSSCEEECCTTCCEEEETTEEEETTEEECSSE
T ss_pred EEEECCCCcceEEecceEEEecCCEEEECCEEecCCE
Confidence 488888 8888888887665544444432 3444
No 28
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=38.18 E-value=15 Score=21.41 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=18.9
Q ss_pred eEEECCEEeccCCeeEEcCCCCceEeecCCCCCC
Q psy4238 7 IGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGG 40 (67)
Q Consensus 7 HIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~ 40 (67)
-|+|||+.|. +.+. +.+-+.|.|.+ |+++
T Consensus 69 ~v~VNg~~v~-~~~~--L~dGDeV~i~p--pv~G 97 (98)
T 1vjk_A 69 NIAVNGRYVS-WDEE--LKDGDVVGVFP--PVSG 97 (98)
T ss_dssp EEEETTBCCC-TTCB--CCTTCEEEEES--CC--
T ss_pred EEEECCEECC-CCCC--CCCCCEEEEEC--CCCC
Confidence 4899999987 5543 55666788865 5554
No 29
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=34.57 E-value=12 Score=18.54 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=14.4
Q ss_pred eeeeeEEECCEEeccCC
Q psy4238 3 IVWEIGRVRKQVVNIPS 19 (67)
Q Consensus 3 IvHGHIaV~gq~V~~Ps 19 (67)
.+=|+|.++|+.+-+|.
T Consensus 6 vIvGri~l~gkp~v~Pd 22 (26)
T 2o8m_C 6 VIVGRIVLSGKPAIIPK 22 (26)
T ss_dssp EEEEEEECSCCCEECCC
T ss_pred EEEEEEEECCceEEcCC
Confidence 35699999999999886
No 30
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=32.25 E-value=44 Score=17.94 Aligned_cols=27 Identities=4% Similarity=-0.109 Sum_probs=16.7
Q ss_pred EEECCEEeccCCee-EEcCCCCceEeec
Q psy4238 8 GRVRKQVVNIPSFV-VRLDSQKHIDFSL 34 (67)
Q Consensus 8 IaV~gq~V~~Psyl-Vr~deE~~Idf~~ 34 (67)
|+|||+.|..-.|. ..+.+-+.|+|.+
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEEEe
Confidence 78888887743221 2356667777765
No 31
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=30.71 E-value=27 Score=19.43 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=20.0
Q ss_pred eEEECCEEecc---CCeeEEcCCCCceEeecCCCCCCC
Q psy4238 7 IGRVRKQVVNI---PSFVVRLDSQKHIDFSLNSPFGGG 41 (67)
Q Consensus 7 HIaV~gq~V~~---PsylVr~deE~~Idf~~~SPl~~~ 41 (67)
-|+|||+.|+. +... +.+.+.|.|.+ |++|+
T Consensus 57 ~v~vN~~~v~~~~~~~~~--l~~gD~V~i~p--pv~GG 90 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTE--IKDDDKIDLFP--PVAGG 90 (90)
T ss_dssp EEEESSSBGGGTCSSSCB--CCTTCEEEEEC--CTTCC
T ss_pred EEEECCEEccccCCCCcC--CCCCCEEEEeC--CCCCC
Confidence 38999998863 4443 45666688764 55553
No 32
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=30.65 E-value=62 Score=22.16 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=26.4
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEeecC
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDFSLN 35 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf~~~ 35 (67)
.++.|-+.|+|+.+. ++-++..+.+..|.+...
T Consensus 186 ~v~~G~v~v~g~~l~-~gd~~~~~~~~~l~l~a~ 218 (242)
T 1tq5_A 186 QVVKGNVTINGVKAS-TSDGLAIWDEQAISIHAD 218 (242)
T ss_dssp EEEESEEEETTEEEE-TTCEEEEESCSCEEEEES
T ss_pred EEccCcEEECCEEeC-CCCEEEECCCCeEEEEeC
Confidence 467899999999877 777888887877877643
No 33
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=30.31 E-value=17 Score=28.46 Aligned_cols=30 Identities=17% Similarity=0.461 Sum_probs=24.9
Q ss_pred ceeeeeEEECCEEeccCCeeEEcCCCCceEe
Q psy4238 2 GIVWEIGRVRKQVVNIPSFVVRLDSQKHIDF 32 (67)
Q Consensus 2 ~IvHGHIaV~gq~V~~PsylVr~deE~~Idf 32 (67)
|+.-|-..|||..+| |+|+++-.+...++.
T Consensus 352 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 381 (497)
T 2zai_A 352 GVLLDAPKVNGEIRS-PTNILREGESGEIEL 381 (497)
T ss_dssp CEECSCCEETTEECC-TTBCSCTTCEEEEEE
T ss_pred eeecCCcccCCEecC-CceecCCCCcCcEEE
Confidence 567788899999988 999998887777664
No 34
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=28.65 E-value=18 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=27.3
Q ss_pred eEEECCEEeccCCeeEEcCCCCceEeecCCCCCCCCcchhhhhh
Q psy4238 7 IGRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKRKN 50 (67)
Q Consensus 7 HIaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~~pgRvkrk~ 50 (67)
.+.|||++|+-| +.+-.-+.|-|-.+.-|--..|...++.+
T Consensus 141 ~t~VNG~~I~~~---~~L~~GDrI~lG~~h~Frfn~P~ea~~~r 181 (184)
T 4egx_A 141 DTYVNGKKVTEP---SILRSGNRIIMGKSHVFRFNHPEQARQER 181 (184)
T ss_dssp CEEETTEECCSC---EECCTTCEEEETTTEEEEEECHHHHHHC-
T ss_pred eEEEcCEEcccc---EEcCCCCEEEECCCCEEEECChHHHHHhh
Confidence 488999999877 56777777777666555443466555433
No 35
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=27.94 E-value=22 Score=22.71 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=24.9
Q ss_pred EEECCEEeccCCeeEEcCCCCceEeecCCCCCCCCcchhhh
Q psy4238 8 GRVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGAGRVKR 48 (67)
Q Consensus 8 IaV~gq~V~~PsylVr~deE~~Idf~~~SPl~~~~pgRvkr 48 (67)
..|||++|+.| +.+-.-+.|.|-.+.-|--..|...++
T Consensus 112 t~VNG~~i~~~---~~L~~GD~I~~G~~~~Frf~~P~~a~~ 149 (154)
T 4ejq_A 112 TYVNGKKVTEP---SILRSGNRIIMGKSHVFRFNHPEQARQ 149 (154)
T ss_dssp EEETTEECCSC---EECCTTCEEEETTTEEEEEECHHHHHH
T ss_pred eEECCEEcCCc---eECCCCCEEEECCcEEEEEcChHHhhh
Confidence 67999999865 467777788776554444333655544
No 36
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=26.67 E-value=22 Score=19.24 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=14.0
Q ss_pred EEECCEEeccCCee-EEcCCCCceEeec
Q psy4238 8 GRVRKQVVNIPSFV-VRLDSQKHIDFSL 34 (67)
Q Consensus 8 IaV~gq~V~~Psyl-Vr~deE~~Idf~~ 34 (67)
|+|||+.|..-.|. ..+.+-+.|+|.+
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 66777776532221 2345555666554
No 37
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=23.86 E-value=65 Score=22.35 Aligned_cols=33 Identities=3% Similarity=-0.097 Sum_probs=26.5
Q ss_pred ceeeeeEEECC-----EEeccCCeeEEcCCCCceEeecC
Q psy4238 2 GIVWEIGRVRK-----QVVNIPSFVVRLDSQKHIDFSLN 35 (67)
Q Consensus 2 ~IvHGHIaV~g-----q~V~~PsylVr~deE~~Idf~~~ 35 (67)
.++.|-+.|+| +.+. ++-++.+..+..|.+...
T Consensus 207 ~v~~G~v~v~g~~~~~~~l~-~gd~~~l~~~~~l~l~a~ 244 (256)
T 2vec_A 207 QSIHGKFHALTHHEEKAALT-CGDGAFIRDEANITLVAD 244 (256)
T ss_dssp EEEESCEEEEETTEEEEEEC-TTCEEEEESCSEEEEEES
T ss_pred EEEECEEEECCccccceEEC-CCCEEEECCCCeEEEEeC
Confidence 46789999998 7776 888888888888887654
No 38
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=20.99 E-value=72 Score=18.49 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=19.5
Q ss_pred eEEECCEEec---cCCeeEEcCCCCceEeecCCCCCCC
Q psy4238 7 IGRVRKQVVN---IPSFVVRLDSQKHIDFSLNSPFGGG 41 (67)
Q Consensus 7 HIaV~gq~V~---~PsylVr~deE~~Idf~~~SPl~~~ 41 (67)
-|+||++-+. -+.+. +.+-+.|.|.| |++|+
T Consensus 66 ~v~VN~~~~~~~~~~d~~--L~dgDeVa~~P--pv~GG 99 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYI--LEDGDIISFTS--TLHGG 99 (99)
T ss_dssp EEEETTEEGGGGTGGGCB--CCTTCEEEEEE--CTTCC
T ss_pred EEEECCEEccccCCCCcC--cCCCCEEEEEC--CCCCC
Confidence 3889998765 34543 44555688865 66653
No 39
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=20.42 E-value=41 Score=19.71 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=19.0
Q ss_pred eEEECCEEec---cCCeeEEcCCCCceEeecCCCCCC
Q psy4238 7 IGRVRKQVVN---IPSFVVRLDSQKHIDFSLNSPFGG 40 (67)
Q Consensus 7 HIaV~gq~V~---~PsylVr~deE~~Idf~~~SPl~~ 40 (67)
-|+|||+.|. -+.+. +.+.+.|.|.+ |+++
T Consensus 66 ~v~VNg~~v~~~~~~~~~--L~~gD~V~i~p--pv~G 98 (99)
T 2l52_A 66 NILINGNNIRHLEGLETL--LKDSDEIGILP--PVSG 98 (99)
T ss_dssp EEEETTSCGGGTTSTTSC--CCTTEEEEEEC--CCSC
T ss_pred EEEECCEEccccCCCCCC--CCCCCEEEEEC--CCCC
Confidence 4799999884 24443 45556677764 5554
Done!