RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4238
         (67 letters)



>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain
          {Thermus thermophilus HB8 [TaxId: 300852]}
          Length = 63

 Score = 21.5 bits (46), Expect = 7.5
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 18 PSFVVRLDSQKH--IDFSLNSPFGGGGAGRVKRKNLR 52
          P   V++D      +++       GG     K KNL 
Sbjct: 9  PGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLE 45


>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 21.7 bits (46), Expect = 9.6
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 39 GGGGAGRVKRKNLRKAASSAAAPAEEDEE 67
          G GG  R + KN  ++        E+ +E
Sbjct: 5  GKGGKNRRRGKNENESEKRELVFKEDGQE 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,064
Number of extensions: 8931
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)