BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy424
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RB31|SC61B_PONAB Protein transport protein Sec61 subunit beta OS=Pongo abelii
GN=SEC61B PE=3 SV=3
Length = 96
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 3/95 (3%)
Query: 3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTD 61
P P S T+VGS RSP R GSTVRQRK + + RT AG+GGMWR+YT+
Sbjct: 4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61
Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>sp|P60468|SC61B_HUMAN Protein transport protein Sec61 subunit beta OS=Homo sapiens
GN=SEC61B PE=1 SV=2
Length = 96
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 3/95 (3%)
Query: 3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTD 61
P P S T+VGS RSP R GSTVRQRK + + RT AG+GGMWR+YT+
Sbjct: 4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61
Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>sp|P60467|SC61B_CANFA Protein transport protein Sec61 subunit beta OS=Canis familiaris
GN=SEC61B PE=1 SV=2
Length = 96
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 3/95 (3%)
Query: 3 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTD 61
P P S T+VGS RSP R GSTVRQRK + + RT AG+GGMWR+YT+
Sbjct: 4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61
Query: 62 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 subunit beta OS=Mus musculus
GN=Sec61b PE=1 SV=3
Length = 96
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 7 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 65
S T+VGS RSP R GSTVRQRK + + RT AG+GGMWR+YT+DSPG
Sbjct: 7 SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 66 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
+KVGPVPVLVMSLLFIA+VFMLHIWGKYTRS
Sbjct: 66 LKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96
>sp|Q54YR4|SC61B_DICDI Protein transport protein Sec61 subunit beta OS=Dictyostelium
discoideum GN=sec61b PE=3 SV=1
Length = 61
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 8/63 (12%)
Query: 34 QRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY 93
QR P T G M ++Y++D+ G+KVGP VL MSL+FIA V +LHI GKY
Sbjct: 7 QRAPATV--------NKGGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKY 58
Query: 94 TRS 96
TRS
Sbjct: 59 TRS 61
>sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1
Length = 91
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 21 GGPGGRPTGSTVRQRKPTTT----TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVM 76
GGP + QR+ T+ RS G S M + YTD+S G+KV PV V+V+
Sbjct: 9 GGPAAQMKRRNNAQRQEAKASQRPTSTRSVGAGGSSSTMLKLYTDESQGLKVDPVVVMVL 68
Query: 77 SLLFIASVFMLHIWGKYT 94
SL FI SV LHI K +
Sbjct: 69 SLGFIFSVVALHILAKVS 86
>sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sbh1 PE=3 SV=1
Length = 102
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 7 SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGG---------MWR 57
SST ++ A PGG S +R+R SN AG+ + +
Sbjct: 2 SSTKASGSVKNSAASAPGG--PKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLK 59
Query: 58 YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR 95
YTD++ G KV PV V+V+S+ FIASVF+LHI + +
Sbjct: 60 LYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARILK 97
>sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta OS=Arabidopsis
thaliana GN=At2g45070 PE=3 SV=1
Length = 82
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Query: 11 VGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGP 70
VGSG +P+ G +++R+RKPT+ +G +G M ++YTDD+PG+K+ P
Sbjct: 2 VGSG--APQRGSAAAT---ASMRRRKPTSGAGGGGA-SGGAAGSMLQFYTDDAPGLKISP 55
Query: 71 VPVLVMSLLFIASVFMLHIWGK 92
VL+MS+ FIA V +LH+ GK
Sbjct: 56 NVVLIMSIGFIAFVAVLHVMGK 77
>sp|P52871|SC6B2_YEAST Protein transport protein SBH2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1
Length = 88
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 23 PGG------RPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLV 75
PGG R ++++++ T T+ R G S + + YTD++ G +V + VL
Sbjct: 7 PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLF 66
Query: 76 MSLLFIASVFMLHIWGKYTR 95
+S+ FI SV LH+ K+T
Sbjct: 67 LSVGFIFSVIALHLLTKFTH 86
>sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1
Length = 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 23 PGGRPT-----GSTVRQRKPTTTTAARSNRTGAG--SGGMWRYYTDDSPGIKVGPVPVLV 75
PGG+ T + +++ K T A + G G S + + YTD++ G++V P+ VL
Sbjct: 6 PGGQRTLQKRRNAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDPLVVLF 65
Query: 76 MSLLFIASVFMLHIWGKYT 94
+++ F+ SV LH+ K +
Sbjct: 66 LAVAFVFSVVALHVVAKVS 84
>sp|P52870|SC6B1_YEAST Protein transport protein SBH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SBH1 PE=1 SV=1
Length = 82
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 23 PGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIA 82
PGG+ T +Q A+ + + + + Y+D++ G++V P+ VL +++ FI
Sbjct: 7 PGGQRTLQKRKQGSSQKVAASAPKKNTNSNNSILKIYSDEATGLRVDPLVVLFLAVGFIF 66
Query: 83 SVFMLHIWGK 92
SV LH+ K
Sbjct: 67 SVVALHVISK 76
>sp|Q5JDK7|SECG_PYRKO Preprotein translocase subunit SecG OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=secG PE=3
SV=1
Length = 56
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 53 GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91
G+ R++ +D+ +KV P V+ ++LL IA F+LH++G
Sbjct: 13 AGLMRFFDEDTRAVKVSPKGVIALTLLLIAFEFILHMFG 51
>sp|B6YW71|SECG_THEON Preprotein translocase subunit SecG OS=Thermococcus onnurineus
(strain NA1) GN=secG PE=3 SV=1
Length = 56
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 53 GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91
G+ R++ +D+ +K+ P V+ ++L+ +A +LH +G
Sbjct: 13 AGLMRFFDEDTKAVKISPRGVIALTLILVALEILLHAFG 51
>sp|C5A4H9|SECG_THEGJ Preprotein translocase subunit SecG OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=secG PE=3 SV=1
Length = 56
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 53 GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91
G+ R++ +D+ IKV P V+ + L+ IA LH++G
Sbjct: 13 AGLMRFFDEDTRAIKVSPKGVIAIVLVLIAFEVFLHLFG 51
>sp|Q975W7|SECG_SULTO Preprotein translocase subunit SecG OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=secG PE=3 SV=1
Length = 58
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 50 AGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW 90
A G+ RYY +++ IK+ P ++++S++ +A V + I
Sbjct: 14 ASMAGLIRYYEEENEKIKISPKLLIIISIIMVAGVIVASIL 54
>sp|Q8TZH7|SECG_PYRFU Preprotein translocase subunit SecG OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=secG
PE=3 SV=1
Length = 56
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 53 GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91
G+ R++ +D+ +KV P L + L+FI +L I G
Sbjct: 13 AGLMRFFDEDTKAVKVTPKGALAIVLVFILIEVLLQIIG 51
>sp|Q2NHI7|SECG_METST Preprotein translocase subunit SecG OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=secG PE=3 SV=1
Length = 56
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 42 AARSNRTGAGSG-GMWRYYTDDSPGIKVGPVPV----LVMSLLFIASVF 85
A + +T SG G+ RY+ DD+ G+K+ P V ++++L+ IA F
Sbjct: 2 ARKDKKTLPASGAGIVRYFNDDTAGVKLSPKQVVIGTIIVALICIALRF 50
>sp|P60464|SECG_SULAC Preprotein translocase subunit SecG OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0729 PE=3 SV=2
Length = 59
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 44 RSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFM 86
+ + A G+ RYY + +K+ P V+V S++ IA V +
Sbjct: 8 KEDVPIASMAGLVRYYESEKEKVKISPKVVVVASIVLIAGVII 50
>sp|P60461|SECG_METTH Preprotein translocase subunit SecG OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=secG PE=3 SV=1
Length = 52
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 42 AARSNRTGAGSG-GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91
A + +T SG G+ RY+ +++ G K+ P V+VMS++ +L G
Sbjct: 2 AKKDKKTLPPSGAGLVRYFEEETKGPKLTPEQVVVMSIILAVFCLVLRFSG 52
>sp|Q2KN96|CYTSA_XENTR Cytospin-A OS=Xenopus tropicalis GN=specc1l PE=2 SV=1
Length = 1101
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 5 PASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSP 64
P SS S AG GG P ++V+ +K +TT+ S +G G R S
Sbjct: 41 PGSSLSKAKSNDDLLAGMAGGLPASNSVKVKKNSTTSYPNSGTAMSGQEGRTRSSAGSSS 100
Query: 65 GIK 67
K
Sbjct: 101 NTK 103
>sp|Q60JJ0|SAS4_CAEBR Spindle assembly abnormal protein 4 OS=Caenorhabditis briggsae
GN=sas-4 PE=3 SV=2
Length = 761
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 19 KAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSP 64
+ G TGS R P+ ++ A S +TG+ G + DD P
Sbjct: 471 RKAAASGIATGSAASSRLPSVSSLASSMKTGSTGKGRTVSFADDEP 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,439,525
Number of Sequences: 539616
Number of extensions: 1802756
Number of successful extensions: 6849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 6500
Number of HSP's gapped (non-prelim): 396
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)