Query psy424
Match_columns 98
No_of_seqs 130 out of 188
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 20:23:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3457|consensus 100.0 4.4E-33 9.5E-38 190.9 6.2 70 28-97 13-87 (88)
2 PF03911 Sec61_beta: Sec61beta 99.8 8.9E-20 1.9E-24 109.3 0.7 41 51-91 1-41 (41)
3 PRK01253 preprotein translocas 99.6 7.3E-17 1.6E-21 102.0 3.1 44 49-92 10-53 (54)
4 COG4023 SBH1 Preprotein transl 98.5 7.3E-08 1.6E-12 62.1 2.6 40 52-91 15-55 (57)
5 PF06692 MNSV_P7B: Melon necro 78.8 0.86 1.9E-05 29.8 0.6 27 60-86 6-32 (61)
6 PF00737 PsbH: Photosystem II 62.0 2.3 5.1E-05 27.0 -0.2 32 60-91 16-47 (52)
7 CHL00066 psbH photosystem II p 60.1 5.3 0.00011 27.0 1.2 33 59-91 30-62 (73)
8 PLN00055 photosystem II reacti 58.9 5.8 0.00013 26.8 1.3 33 59-91 30-62 (73)
9 PRK02624 psbH photosystem II r 58.2 5.8 0.00012 26.2 1.1 33 59-91 18-50 (64)
10 PF06387 Calcyon: D1 dopamine 43.8 14 0.00031 28.8 1.4 33 56-90 72-104 (186)
11 COG4736 CcoQ Cbb3-type cytochr 39.4 18 0.0004 23.3 1.3 19 72-92 14-32 (60)
12 PRK07353 F0F1 ATP synthase sub 36.6 23 0.00051 24.3 1.5 19 72-90 7-25 (140)
13 PF10679 DUF2491: Protein of u 36.1 28 0.00061 27.2 2.1 19 50-68 61-79 (212)
14 PF11185 DUF2971: Protein of u 33.9 15 0.00033 22.1 0.2 15 55-69 1-15 (90)
15 PRK13460 F0F1 ATP synthase sub 32.2 23 0.00051 25.6 1.0 22 69-90 15-36 (173)
16 PF07406 NICE-3: NICE-3 protei 31.2 46 0.001 25.4 2.5 21 71-92 12-32 (186)
17 COG1687 AzlD Predicted branche 31.1 53 0.0011 23.6 2.6 38 54-93 49-86 (106)
18 PF12606 RELT: Tumour necrosis 28.1 62 0.0014 20.1 2.3 19 72-90 3-21 (50)
19 PF07856 Orai-1: Mediator of C 27.9 18 0.00038 27.4 -0.3 43 54-97 129-171 (175)
20 PRK13453 F0F1 ATP synthase sub 26.3 32 0.00069 25.1 0.8 23 68-90 16-38 (173)
21 PRK14472 F0F1 ATP synthase sub 26.0 32 0.00069 24.9 0.8 22 69-90 17-38 (175)
22 KOG2678|consensus 26.0 46 0.001 27.0 1.7 21 73-93 223-243 (244)
23 PF05393 Hum_adeno_E3A: Human 25.8 50 0.0011 23.3 1.7 30 57-89 24-53 (94)
24 PF10669 Phage_Gp23: Protein g 25.1 61 0.0013 23.5 2.1 19 74-92 17-35 (121)
25 PRK07352 F0F1 ATP synthase sub 23.1 29 0.00063 25.1 0.1 35 56-90 5-39 (174)
26 PF04834 Adeno_E3_14_5: Early 22.7 39 0.00084 23.9 0.7 37 57-94 12-48 (97)
27 PF15048 OSTbeta: Organic solu 22.0 87 0.0019 23.0 2.4 14 56-69 25-38 (125)
28 PF12911 OppC_N: N-terminal TM 21.1 1E+02 0.0023 17.9 2.3 19 75-93 19-37 (56)
29 PRK13892 conjugal transfer pro 21.0 25 0.00054 26.2 -0.6 38 54-92 75-113 (134)
30 KOG1935|consensus 20.2 49 0.0011 31.8 1.0 27 64-90 966-993 (1143)
31 PF05663 DUF809: Protein of un 20.1 1E+02 0.0022 22.6 2.4 20 72-91 21-40 (138)
No 1
>KOG3457|consensus
Probab=99.98 E-value=4.4e-33 Score=190.89 Aligned_cols=70 Identities=56% Similarity=0.928 Sum_probs=62.2
Q ss_pred CCcccccccCC--C---CCccccCCCCCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhhccccC
Q psy424 28 TGSTVRQRKPT--T---TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSS 97 (98)
Q Consensus 28 ~~~~~r~R~~~--~---~~s~r~~~~g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~~~~~ 97 (98)
..+++|||+.. . +.++|+++.++++++||||||||++||||+|++||||||+||++||+||||+||++..
T Consensus 13 ~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~PvvVLvmSvgFIasV~~LHi~gK~~~~~ 87 (88)
T KOG3457|consen 13 ATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVDPVVVLVMSVGFIASVFALHIWGKLTRSK 87 (88)
T ss_pred hHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeCCeeehhhhHHHHHHHHHHHHHHHHhhcc
Confidence 46668899866 2 4567777778899999999999999999999999999999999999999999999865
No 2
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=99.76 E-value=8.9e-20 Score=109.33 Aligned_cols=41 Identities=51% Similarity=1.014 Sum_probs=25.4
Q ss_pred CCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhh
Q psy424 51 GSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91 (98)
Q Consensus 51 ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~g 91 (98)
|++||+|||+||++|+|++|++||+++++||++|++||||+
T Consensus 1 Ssagl~r~y~ed~~giki~P~~Vl~~si~fi~~V~~Lhi~~ 41 (41)
T PF03911_consen 1 SSAGLLRYYEEDAPGIKIDPKTVLIISIAFIAIVILLHIFA 41 (41)
T ss_dssp ------------S-SS-BSCCHHHHHHHHHHHHHHHHT-SS
T ss_pred CCCcceeeeeccCCcceeCCeehHHHHHHHHHHHHHHhhhC
Confidence 57899999999999999999999999999999999999985
No 3
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=99.65 E-value=7.3e-17 Score=102.00 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=41.1
Q ss_pred CCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhh
Q psy424 49 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGK 92 (98)
Q Consensus 49 g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK 92 (98)
.-+++||+||||||++|+||+|.+||+++++||++|++||++..
T Consensus 10 ~~ssAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L~~~~~ 53 (54)
T PRK01253 10 LMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALFP 53 (54)
T ss_pred CcccchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHHHhhcC
Confidence 45789999999999999999999999999999999999999853
No 4
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=98.51 E-value=7.3e-08 Score=62.09 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=37.0
Q ss_pred CccceeeeecCCCc-eeEcceeeehhhHHHHHHHHHHHHhh
Q psy424 52 SGGMWRYYTDDSPG-IKVGPVPVLVMSLLFIASVFMLHIWG 91 (98)
Q Consensus 52 s~gmlrfYtdds~G-lkv~P~~VLv~Sl~FI~~V~lLHI~g 91 (98)
+.|++|||+||..+ +|+||..|+.+++.|++.|++-||+.
T Consensus 15 ~AGLi~f~eEee~~~ikidP~~vV~~~~av~~lvi~A~~f~ 55 (57)
T COG4023 15 AAGLIRFFEEEEIKGIKIDPRLVVYAGIAVAILVIAAHIFA 55 (57)
T ss_pred ccceeeeecccccCCcccCchhhHHHHHHHHHHHHHHHHhc
Confidence 56899999988876 99999999999999999999999985
No 5
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=78.77 E-value=0.86 Score=29.75 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=22.9
Q ss_pred ecCCCceeEcceeeehhhHHHHHHHHH
Q psy424 60 TDDSPGIKVGPVPVLVMSLLFIASVFM 86 (98)
Q Consensus 60 tdds~Glkv~P~~VLv~Sl~FI~~V~l 86 (98)
-|++||=-..|+.||++++.|+.+-++
T Consensus 6 c~~~p~d~~~~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 6 CDSAPGDYSGPLLILIISFVFFLITSL 32 (61)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHhhh
Confidence 378899999999999999999876654
No 6
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=62.02 E-value=2.3 Score=27.05 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=26.8
Q ss_pred ecCCCceeEcceeeehhhHHHHHHHHHHHHhh
Q psy424 60 TDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91 (98)
Q Consensus 60 tdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~g 91 (98)
..-+||+--.|+...+|.+.|++.+++|.|++
T Consensus 16 GkVaPGWGTtplM~~~m~lf~vfl~iiL~IyN 47 (52)
T PF00737_consen 16 GKVAPGWGTTPLMGVFMALFAVFLLIILEIYN 47 (52)
T ss_dssp T--BSTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34467888899999999999999999999985
No 7
>CHL00066 psbH photosystem II protein H
Probab=60.12 E-value=5.3 Score=27.00 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=29.2
Q ss_pred eecCCCceeEcceeeehhhHHHHHHHHHHHHhh
Q psy424 59 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91 (98)
Q Consensus 59 Ytdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~g 91 (98)
|..-+||+--.|+.-.+|.|.+++.+++|.|+.
T Consensus 30 yGkvapgWGTtp~Mgv~m~lf~vfl~iiLeiyN 62 (73)
T CHL00066 30 YGKVAPGWGTTPLMGVAMALFAVFLSIILEIYN 62 (73)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 555678999999999999999999999999985
No 8
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=58.90 E-value=5.8 Score=26.80 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=29.3
Q ss_pred eecCCCceeEcceeeehhhHHHHHHHHHHHHhh
Q psy424 59 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91 (98)
Q Consensus 59 Ytdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~g 91 (98)
|..-+||+--.|+.-.+|.|.+++.+++|.|+.
T Consensus 30 yGkvapgWGTtp~Mg~~m~lf~vfl~iileiyN 62 (73)
T PLN00055 30 YGKVAPGWGTTPLMGVAMALFAVFLSIILEIYN 62 (73)
T ss_pred cCcccCCccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 555678999999999999999999999999985
No 9
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=58.17 E-value=5.8 Score=26.24 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=29.1
Q ss_pred eecCCCceeEcceeeehhhHHHHHHHHHHHHhh
Q psy424 59 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 91 (98)
Q Consensus 59 Ytdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~g 91 (98)
|..-+||+--.|+.-.+|.|.+++.+++|.|+.
T Consensus 18 yGKVaPGWGTTplMgv~m~Lf~vFl~iiLeIYN 50 (64)
T PRK02624 18 YGKVVPGWGTTPVMAVFMVLFLVFLLIILQIYN 50 (64)
T ss_pred cCcccCCccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 455678999999999999999999999999985
No 10
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=43.76 E-value=14 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=23.7
Q ss_pred eeeeecCCCceeEcceeeehhhHHHHHHHHHHHHh
Q psy424 56 WRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 56 lrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~ 90 (98)
..||++++..+|+ ...++++++|++||++|-++
T Consensus 72 ~~~~~~v~~rlk~--t~lI~~alAfl~Cv~~Lv~Y 104 (186)
T PF06387_consen 72 ISFTEEVSERLKV--TRLIAFALAFLGCVVFLVMY 104 (186)
T ss_pred eccCcccccccch--hHHHHHHHHHHHHHHHHHhh
Confidence 3566777665555 45677899999999888654
No 11
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.44 E-value=18 Score=23.31 Aligned_cols=19 Identities=21% Similarity=0.572 Sum_probs=13.5
Q ss_pred eeehhhHHHHHHHHHHHHhhh
Q psy424 72 PVLVMSLLFIASVFMLHIWGK 92 (98)
Q Consensus 72 ~VLv~Sl~FI~~V~lLHI~gK 92 (98)
.+++|+++||++|+ |++.+
T Consensus 14 ~t~~~~l~fiavi~--~ayr~ 32 (60)
T COG4736 14 GTIAFTLFFIAVIY--FAYRP 32 (60)
T ss_pred HHHHHHHHHHHHHH--HHhcc
Confidence 46788999998875 44443
No 12
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=36.58 E-value=23 Score=24.33 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=13.9
Q ss_pred eeehhhHHHHHHHHHHHHh
Q psy424 72 PVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 72 ~VLv~Sl~FI~~V~lLHI~ 90 (98)
.++++.+-|+..+|+|+.|
T Consensus 7 t~~~~~i~flil~~ll~~~ 25 (140)
T PRK07353 7 TLPLMAVQFVLLTFILNAL 25 (140)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566667888888888665
No 13
>PF10679 DUF2491: Protein of unknown function (DUF2491); InterPro: IPR019621 This entry represents a family of bacterial uncharacterised proteins.
Probab=36.07 E-value=28 Score=27.21 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.4
Q ss_pred CCCccceeeeecCCCceeE
Q psy424 50 AGSGGMWRYYTDDSPGIKV 68 (98)
Q Consensus 50 ~ss~gmlrfYtdds~Glkv 68 (98)
+.+.-+.|||+||..=|.|
T Consensus 61 g~g~~l~RfYtddd~~lQv 79 (212)
T PF10679_consen 61 GQGSTLHRFYTDDDGFLQV 79 (212)
T ss_pred CCCcEEEEEEeCCCcEEEE
Confidence 4567899999999765544
No 14
>PF11185 DUF2971: Protein of unknown function (DUF2971); InterPro: IPR021352 This bacterial family of proteins has no known function.
Probab=33.92 E-value=15 Score=22.12 Aligned_cols=15 Identities=47% Similarity=1.156 Sum_probs=10.0
Q ss_pred ceeeeecCCCceeEc
Q psy424 55 MWRYYTDDSPGIKVG 69 (98)
Q Consensus 55 mlrfYtdds~Glkv~ 69 (98)
||+.|.|+..|+-|.
T Consensus 1 mW~~Y~~~~~Gv~i~ 15 (90)
T PF11185_consen 1 MWRHYADNHKGVCIG 15 (90)
T ss_pred ChHHhCCCCceEEEE
Confidence 677777777766543
No 15
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=32.16 E-value=23 Score=25.64 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=15.6
Q ss_pred cceeeehhhHHHHHHHHHHHHh
Q psy424 69 GPVPVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 69 ~P~~VLv~Sl~FI~~V~lLHI~ 90 (98)
+|..+++..+.|+.++++|..|
T Consensus 15 ~~~~~~~~~i~Flil~~iL~~~ 36 (173)
T PRK13460 15 NPGLVVWTLVTFLVVVLVLKKF 36 (173)
T ss_pred cHhHHHHHHHHHHHHHHHHHHH
Confidence 4545666778888888888654
No 16
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=31.17 E-value=46 Score=25.39 Aligned_cols=21 Identities=29% Similarity=0.361 Sum_probs=15.5
Q ss_pred eeeehhhHHHHHHHHHHHHhhh
Q psy424 71 VPVLVMSLLFIASVFMLHIWGK 92 (98)
Q Consensus 71 ~~VLv~Sl~FI~~V~lLHI~gK 92 (98)
.+||||+++.+++|++ =||.|
T Consensus 12 ~vvlv~a~g~l~~vll-fIfaK 32 (186)
T PF07406_consen 12 NVVLVIAYGSLVFVLL-FIFAK 32 (186)
T ss_pred eeehhhHHHHHHHHHH-HHHHH
Confidence 5789999998888664 45554
No 17
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=31.12 E-value=53 Score=23.57 Aligned_cols=38 Identities=34% Similarity=0.486 Sum_probs=22.3
Q ss_pred cceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhhc
Q psy424 54 GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY 93 (98)
Q Consensus 54 gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~ 93 (98)
+|+-.|+-.+.-+-..|. =+=.+.=.++|.+||.|.|-
T Consensus 49 ~~Lviyclk~v~~~~~~~--Gipei~a~~~V~~Lh~wkkn 86 (106)
T COG1687 49 GMLVIYCLKDVAILLGPH--GIPEILAAAIVAALHLWKKN 86 (106)
T ss_pred HHHHHHHHccceeccCCC--CHHHHHHHHHHHHHHHHhcc
Confidence 445555544433333343 33345556789999999873
No 18
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.09 E-value=62 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=11.4
Q ss_pred eeehhhHHHHHHHHHHHHh
Q psy424 72 PVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 72 ~VLv~Sl~FI~~V~lLHI~ 90 (98)
.++++++.|+..|+.+=|+
T Consensus 3 ~~~iV~i~iv~~lLg~~I~ 21 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSIC 21 (50)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 3566677776666655444
No 19
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=27.85 E-value=18 Score=27.37 Aligned_cols=43 Identities=21% Similarity=0.560 Sum_probs=23.2
Q ss_pred cceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhhccccC
Q psy424 54 GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSS 97 (98)
Q Consensus 54 gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~~~~~ 97 (98)
+..|||+.+.+.--+-- .++.+...+|..++..|+|+++.+.+
T Consensus 129 ~WIKF~~~~~~~aa~~~-t~i~~~~~li~~~~~~~~wr~l~~~~ 171 (175)
T PF07856_consen 129 GWIKFWDSPSPAAAIAI-TAILVPVLLIFVVFIQHFWRSLVSHK 171 (175)
T ss_pred HheeehhccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45688887333222111 12222333444458889999987643
No 20
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=26.30 E-value=32 Score=25.07 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=17.4
Q ss_pred EcceeeehhhHHHHHHHHHHHHh
Q psy424 68 VGPVPVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 68 v~P~~VLv~Sl~FI~~V~lLHI~ 90 (98)
+++..+++..+.|+..+++|+.|
T Consensus 16 ~~~~t~~~~iInFliL~~lL~~~ 38 (173)
T PRK13453 16 VEWGTVIVTVLTFIVLLALLKKF 38 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888765
No 21
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=26.01 E-value=32 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=15.3
Q ss_pred cceeeehhhHHHHHHHHHHHHh
Q psy424 69 GPVPVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 69 ~P~~VLv~Sl~FI~~V~lLHI~ 90 (98)
+|..+++..+.|+.++++|+-|
T Consensus 17 ~~~~~~~~~i~Flil~~lL~~~ 38 (175)
T PRK14472 17 NPGLIFWTAVTFVIVLLILKKI 38 (175)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667778888888888654
No 22
>KOG2678|consensus
Probab=25.96 E-value=46 Score=26.96 Aligned_cols=21 Identities=19% Similarity=0.616 Sum_probs=15.5
Q ss_pred eehhhHHHHHHHHHHHHhhhc
Q psy424 73 VLVMSLLFIASVFMLHIWGKY 93 (98)
Q Consensus 73 VLv~Sl~FI~~V~lLHI~gK~ 93 (98)
.+++.++||.-|+++.|+-|+
T Consensus 223 iI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 223 IIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 455667777788888888775
No 23
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.78 E-value=50 Score=23.30 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=21.3
Q ss_pred eeeecCCCceeEcceeeehhhHHHHHHHHHHHH
Q psy424 57 RYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHI 89 (98)
Q Consensus 57 rfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI 89 (98)
.-|..+-++|-|. -+++.++||..|++--+
T Consensus 24 ~~~~n~~~~Lgm~---~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 24 SMFVNNWPNLGMW---FLVICGIFILLVILWFV 53 (94)
T ss_pred EeecCCCCccchh---HHHHHHHHHHHHHHHHH
Confidence 3466677788875 77888888888776544
No 24
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.14 E-value=61 Score=23.52 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=12.6
Q ss_pred ehhhHHHHHHHHHHHHhhh
Q psy424 74 LVMSLLFIASVFMLHIWGK 92 (98)
Q Consensus 74 Lv~Sl~FI~~V~lLHI~gK 92 (98)
++.+..||+..++|-|++|
T Consensus 17 ~~FA~L~i~~FiILLIi~~ 35 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITK 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677777777766654
No 25
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=23.08 E-value=29 Score=25.10 Aligned_cols=35 Identities=9% Similarity=-0.001 Sum_probs=22.5
Q ss_pred eeeeecCCCceeEcceeeehhhHHHHHHHHHHHHh
Q psy424 56 WRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 56 lrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~ 90 (98)
+-|-+|...+|-+++...+...+-|+.++++|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~iinflIl~~lL~~f 39 (174)
T PRK07352 5 LLLATEAEGGFGLNLNLLETNLINLAIVIGLLYYF 39 (174)
T ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 33445566667677665666667777777777554
No 26
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=22.70 E-value=39 Score=23.87 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.2
Q ss_pred eeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhhcc
Q psy424 57 RYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 94 (98)
Q Consensus 57 rfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~~ 94 (98)
.-|++++. +-..=+.++.+.++|+..++.|-|+.+|.
T Consensus 12 ~CY~~~~d-~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~ 48 (97)
T PF04834_consen 12 DCYDKKSD-MPNYWLYAIGIVLVFCSTFFSLAIYPCFD 48 (97)
T ss_pred hhcccCCC-CCHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 34554433 55555667777888888899998888875
No 27
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=22.00 E-value=87 Score=23.03 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=9.5
Q ss_pred eeeeecCCCceeEc
Q psy424 56 WRYYTDDSPGIKVG 69 (98)
Q Consensus 56 lrfYtdds~Glkv~ 69 (98)
|-|=+||+..++..
T Consensus 25 W~fR~ED~tpWNys 38 (125)
T PF15048_consen 25 WFFRVEDATPWNYS 38 (125)
T ss_pred HheecCCCCCcchH
Confidence 34556888877764
No 28
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.15 E-value=1e+02 Score=17.89 Aligned_cols=19 Identities=21% Similarity=0.604 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHhhhc
Q psy424 75 VMSLLFIASVFMLHIWGKY 93 (98)
Q Consensus 75 v~Sl~FI~~V~lLHI~gK~ 93 (98)
+++++++++++++=|++.+
T Consensus 19 ~~gl~il~~~vl~ai~~p~ 37 (56)
T PF12911_consen 19 VIGLIILLILVLLAIFAPF 37 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666544
No 29
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=20.99 E-value=25 Score=26.16 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=30.2
Q ss_pred cceeeeecCCCce-eEcceeeehhhHHHHHHHHHHHHhhh
Q psy424 54 GMWRYYTDDSPGI-KVGPVPVLVMSLLFIASVFMLHIWGK 92 (98)
Q Consensus 54 gmlrfYtdds~Gl-kv~P~~VLv~Sl~FI~~V~lLHI~gK 92 (98)
.+|- |.||..|+ |=-=++||++++.|-+.-|++-++++
T Consensus 75 ~~La-FGge~~gf~R~li~vVl~lsi~~~A~n~~~~ffg~ 113 (134)
T PRK13892 75 GILI-FGGELNGFFRTLIFIVLVMALLVGAQNMMSTFFGR 113 (134)
T ss_pred hHhh-cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444 47777877 77778999999999999999888753
No 30
>KOG1935|consensus
Probab=20.17 E-value=49 Score=31.76 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=23.3
Q ss_pred CceeEccee-eehhhHHHHHHHHHHHHh
Q psy424 64 PGIKVGPVP-VLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 64 ~Glkv~P~~-VLv~Sl~FI~~V~lLHI~ 90 (98)
-|||++|+. |+++.++||...|.+|+.
T Consensus 966 ~GIKlS~i~aViLi~sVGigveFtvhv~ 993 (1143)
T KOG1935|consen 966 LGIKLSAIPAVILIASVGIGVEFTVHVA 993 (1143)
T ss_pred hceeeccchhHHHHHHhhhchhhhHHHH
Confidence 489999986 567789999999999985
No 31
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=20.09 E-value=1e+02 Score=22.57 Aligned_cols=20 Identities=40% Similarity=0.746 Sum_probs=15.6
Q ss_pred eeehhhHHHHHHHHHHHHhh
Q psy424 72 PVLVMSLLFIASVFMLHIWG 91 (98)
Q Consensus 72 ~VLv~Sl~FI~~V~lLHI~g 91 (98)
-|-++|+...+..++-|||=
T Consensus 21 kvsvisffllayllmahiwl 40 (138)
T PF05663_consen 21 KVSVISFFLLAYLLMAHIWL 40 (138)
T ss_pred eeehHHHHHHHHHHHHHHHH
Confidence 35677888888888889994
Done!