Query psy424
Match_columns 98
No_of_seqs 130 out of 188
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:24:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_C SEC61BETA, protein tran 100.0 5.2E-36 1.8E-40 207.1 1.0 94 2-96 1-96 (96)
2 2ww9_C Protein transport prote 99.9 6E-27 2.1E-31 159.4 -0.2 55 40-94 31-85 (87)
3 1rh5_C Secbeta; protein transl 99.6 6.3E-17 2.2E-21 101.1 1.2 42 49-90 9-50 (53)
4 3arc_H Photosystem II reaction 58.3 2.1 7.2E-05 27.4 0.0 34 59-92 17-50 (65)
5 1lgh_A LH II, B800/850, light 22.3 26 0.00088 21.6 0.6 24 67-90 12-36 (56)
6 2ftc_C L3MT, MRP-L3, mitochond 14.5 88 0.003 23.5 2.1 23 52-74 8-35 (211)
7 3r8s_D 50S ribosomal protein L 13.9 87 0.003 23.5 2.0 23 52-74 8-35 (209)
8 1jb0_I Photosystem 1 reaction 13.8 58 0.002 18.6 0.8 19 70-89 16-34 (38)
9 2ofc_A Sclerotium rolfsii lect 13.2 1.1E+02 0.0037 21.9 2.2 14 49-62 47-60 (142)
10 3qds_A Boletus edulis lectin; 12.1 1.3E+02 0.0043 21.7 2.3 14 49-62 48-61 (143)
No 1
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=5.2e-36 Score=207.06 Aligned_cols=94 Identities=68% Similarity=1.127 Sum_probs=35.0
Q ss_pred CCCC-CCCCccCCCCCCCCCCCCCCCCCCcccccccCCC-CCccccCCCCCCCccceeeeecCCCceeEcceeeehhhHH
Q psy424 2 TPAP-ASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTT-TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLL 79 (98)
Q Consensus 2 mp~~-~sst~vg~~~~sp~~~~~~~~~~~~~~r~R~~~~-~~s~r~~~~g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~ 79 (98)
||++ +|+|+|++++++|.+.+++ +++++++||||.++ .++.+.++.+++++|||||||||++||||+|++||+|+|+
T Consensus 1 m~~~~~s~t~vg~~~~~p~~~a~~-~~~g~~~r~Rr~~~~~~~~~~~~~~~SsaGllRfY~dds~GlKV~P~~VLv~sl~ 79 (96)
T 2wwb_C 1 MPGPTPSGTNVGSSGRSPSKAVAA-RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLL 79 (96)
T ss_dssp -------------------------------------------------------------CCSCCCCCSSCSHHHHHHH
T ss_pred CCCcccCccccccCCCCCCccccc-ccCCcceEecccCCCccCCCCCCCCCCCcceeeeeecCCCceEECCEEehhhHHH
Confidence 7876 7999999999999887765 33566799999765 4456667888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccc
Q psy424 80 FIASVFMLHIWGKYTRS 96 (98)
Q Consensus 80 FI~~V~lLHI~gK~~~~ 96 (98)
||++||+||||+||+|.
T Consensus 80 Fi~~Vi~Lhi~~K~~r~ 96 (96)
T 2wwb_C 80 FIASVFMLHIWGKYTRS 96 (96)
T ss_dssp HHHHHHHHSCSSSCCCC
T ss_pred HHHHHHHHHHhhhhccC
Confidence 99999999999999874
No 2
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=99.92 E-value=6e-27 Score=159.43 Aligned_cols=55 Identities=36% Similarity=0.603 Sum_probs=21.0
Q ss_pred CCccccCCCCCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHhhhcc
Q psy424 40 TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 94 (98)
Q Consensus 40 ~~s~r~~~~g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~~ 94 (98)
+.++++++.+++++||||||+||++||||+|++||+|+|+||++||+||||+||+
T Consensus 31 ~~s~~~~~~ggss~gllrfYtdds~GlKV~P~~VLv~sl~FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 31 PTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT 85 (87)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHC-------
T ss_pred CCCCCCCCCCCCchhHHHHhhcCCCceEEcCeeehhhHHHHHHHHHHHHHhhhhc
Confidence 4456677888899999999999999999999999999999999999999999997
No 3
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=99.62 E-value=6.3e-17 Score=101.13 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=29.2
Q ss_pred CCCCccceeeeecCCCceeEcceeeehhhHHHHHHHHHHHHh
Q psy424 49 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW 90 (98)
Q Consensus 49 g~ss~gmlrfYtdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~ 90 (98)
..+++||+|||+||++|+||+|++||+++++||++|++||+.
T Consensus 9 ~~ssaGLvryy~ee~~giKi~P~~Vl~~si~~i~~V~~L~~~ 50 (53)
T 1rh5_C 9 LATSAGLIRYMDETFSKIRVKPEHVIGVTVAFVIIEAILTYG 50 (53)
T ss_dssp ------------CCCCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccchhhhhccCCccccCCeehhhhHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999984
No 4
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=58.26 E-value=2.1 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=28.8
Q ss_pred eecCCCceeEcceeeehhhHHHHHHHHHHHHhhh
Q psy424 59 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGK 92 (98)
Q Consensus 59 Ytdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK 92 (98)
|..-+||+--.|+...+|+|.+++.+++|.|+..
T Consensus 17 yGKvaPGWGTtplMgv~m~Lf~vFl~iiLeIYNs 50 (65)
T 3arc_H 17 YGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNS 50 (65)
T ss_dssp TTCCBSTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcccCCccChhHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445788888999999999999999999999853
No 5
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=22.28 E-value=26 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=17.2
Q ss_pred eEcceeeehhhHHHHHHHHH-HHHh
Q psy424 67 KVGPVPVLVMSLLFIASVFM-LHIW 90 (98)
Q Consensus 67 kv~P~~VLv~Sl~FI~~V~l-LHI~ 90 (98)
-++|...|+.-++|.+..-+ .|++
T Consensus 12 vvdP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 12 VINPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCceeHHHHHHHHHHHHHHHHHH
Confidence 46788888888888776544 4764
No 6
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=14.54 E-value=88 Score=23.49 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=15.1
Q ss_pred CccceeeeecCCC-----ceeEcceeee
Q psy424 52 SGGMWRYYTDDSP-----GIKVGPVPVL 74 (98)
Q Consensus 52 s~gmlrfYtdds~-----Glkv~P~~VL 74 (98)
.-||.++|+||-. =|+++|..|+
T Consensus 8 KiGMt~if~~~G~~ipvTVl~~~~~~V~ 35 (211)
T 2ftc_C 8 KLGMMPLWTKDGQKHVVTLLQVQDCHVL 35 (211)
T ss_pred EcceEEEECCCCcEEEEEEEEEcCCEEE
Confidence 4589999998743 2455555554
No 7
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=13.86 E-value=87 Score=23.52 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=15.6
Q ss_pred CccceeeeecCCCc-----eeEcceeee
Q psy424 52 SGGMWRYYTDDSPG-----IKVGPVPVL 74 (98)
Q Consensus 52 s~gmlrfYtdds~G-----lkv~P~~VL 74 (98)
.-||.++|+||-.- |+++|..|+
T Consensus 8 KiGMt~if~~~G~~ipvTVl~~~~~~V~ 35 (209)
T 3r8s_D 8 KVGMTRIFTEDGVSIPVTVIEVEANRVT 35 (209)
T ss_dssp EEEEEEEECTTCCEEEEEEEECCCEEEE
T ss_pred EeceeEEECCCCcEEEEEEEEecCCEEE
Confidence 34799999987442 566666654
No 8
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=13.78 E-value=58 Score=18.60 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=11.2
Q ss_pred ceeeehhhHHHHHHHHHHHH
Q psy424 70 PVPVLVMSLLFIASVFMLHI 89 (98)
Q Consensus 70 P~~VLv~Sl~FI~~V~lLHI 89 (98)
|++-|++-.++|++.| +||
T Consensus 16 PlVglvfPai~Mallf-~yI 34 (38)
T 1jb0_I 16 PVVCWLMPTVVMGLLF-LYI 34 (38)
T ss_dssp HHHHTHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHHHHHHH-Hhh
Confidence 5555666666666655 454
No 9
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
Probab=13.19 E-value=1.1e+02 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=10.9
Q ss_pred CCCCccceeeeecC
Q psy424 49 GAGSGGMWRYYTDD 62 (98)
Q Consensus 49 g~ss~gmlrfYtdd 62 (98)
|.+++|||||-++.
T Consensus 47 gSGTSG~LRf~~~~ 60 (142)
T 2ofc_A 47 GSGTSGTLRFHADN 60 (142)
T ss_dssp SSSCEEEEEEEETT
T ss_pred CCCcceeEEEecCC
Confidence 34688999998774
No 10
>3qds_A Boletus edulis lectin; mushroom, T-antigen, carbohydrate, S binding, sugar binding protein; 1.15A {Boletus edulis} SCOP: b.97.1.2 PDB: 3qdt_A* 3qdu_A* 3qdv_A* 3qdw_A* 3qdx_A* 3qdy_A* 1x99_A* 1xi0_A
Probab=12.12 E-value=1.3e+02 Score=21.67 Aligned_cols=14 Identities=36% Similarity=0.952 Sum_probs=10.8
Q ss_pred CCCCccceeeeecC
Q psy424 49 GAGSGGMWRYYTDD 62 (98)
Q Consensus 49 g~ss~gmlrfYtdd 62 (98)
+.+++|||||-+|.
T Consensus 48 gSGTSG~LRf~~~~ 61 (143)
T 3qds_A 48 GSGTSGVLRFMSDK 61 (143)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCcceEEEEEcCC
Confidence 34688999997774
Done!