Query psy424
Match_columns 98
No_of_seqs 130 out of 188
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 20:24:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axth1 f.23.33.1 (H:2-65) Pho 46.9 2.4 0.00018 25.5 0.5 34 59-92 17-50 (64)
2 d1rh5c_ f.23.29.1 (C:) Sec-bet 44.1 3.8 0.00028 21.4 0.9 25 64-88 4-28 (32)
3 d1ojta2 c.3.1.5 (A:276-400) Di 25.2 6.5 0.00047 24.3 -0.2 33 61-94 17-49 (125)
4 d1x99a_ b.97.1.2 (A:) Lectin x 24.3 20 0.0015 24.2 2.2 18 49-66 50-67 (145)
5 d1wxaa1 d.15.1.5 (A:8-110) Afa 20.5 17 0.0012 21.7 1.1 11 52-62 1-11 (103)
6 d2zjrb1 b.43.3.2 (B:1-205) Rib 16.1 35 0.0026 23.3 2.1 18 53-74 9-26 (205)
7 d1y2ta_ b.97.1.2 (A:) TF antig 15.9 30 0.0022 23.2 1.6 16 49-64 46-61 (142)
8 d2j01e1 b.43.3.2 (E:1-205) Rib 13.5 46 0.0033 22.3 2.1 21 52-76 8-28 (205)
9 d1v54d_ f.23.1.1 (D:) Mitochon 11.2 51 0.0037 21.7 1.7 23 71-93 76-98 (144)
10 d1ppjd2 f.23.11.1 (D:196-241) 11.1 60 0.0044 17.5 1.7 7 88-94 30-36 (46)
No 1
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=46.87 E-value=2.4 Score=25.52 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=29.2
Q ss_pred eecCCCceeEcceeeehhhHHHHHHHHHHHHhhh
Q psy424 59 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGK 92 (98)
Q Consensus 59 Ytdds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK 92 (98)
|..-+||+--.|+.-.+|.|.+++.+++|.|+..
T Consensus 17 yGKVaPGWGTTplMgv~m~Lf~vfl~iiLeiYNs 50 (64)
T d2axth1 17 YGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNS 50 (64)
T ss_dssp SSCCCSTTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcccCCcCccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788888999999999999999999999854
No 2
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=44.06 E-value=3.8 Score=21.37 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.7
Q ss_pred CceeEcceeeehhhHHHHHHHHHHH
Q psy424 64 PGIKVGPVPVLVMSLLFIASVFMLH 88 (98)
Q Consensus 64 ~Glkv~P~~VLv~Sl~FI~~V~lLH 88 (98)
.-++|.|.+|+-..+.|+.+..+|.
T Consensus 4 skirvkpehvigvtvafviieailt 28 (32)
T d1rh5c_ 4 SKIRVKPEHVIGVTVAFVIIEAILT 28 (32)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeccceEEEEEEehhhHHHHHh
Confidence 4589999999999999988776653
No 3
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=25.18 E-value=6.5 Score=24.33 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=26.9
Q ss_pred cCCCceeEcceeeehhhHHHHHHHHHHHHhhhcc
Q psy424 61 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 94 (98)
Q Consensus 61 dds~Glkv~P~~VLv~Sl~FI~~V~lLHI~gK~~ 94 (98)
||.--++--|..|+|+--+||++.+. +++.++.
T Consensus 17 ~~~l~l~~~p~~vvIiGgG~IG~E~A-~~~~~~G 49 (125)
T d1ojta2 17 SGALALKEVPGKLLIIGGGIIGLEMG-TVYSTLG 49 (125)
T ss_dssp HHHTTCCCCCSEEEEESCSHHHHHHH-HHHHHHT
T ss_pred HHhhCccccCCeEEEECCCHHHHHHH-HHhhcCC
Confidence 55556777799999999999999997 7776653
No 4
>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId: 5386]}
Probab=24.25 E-value=20 Score=24.21 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=12.8
Q ss_pred CCCCccceeeeecCCCce
Q psy424 49 GAGSGGMWRYYTDDSPGI 66 (98)
Q Consensus 49 g~ss~gmlrfYtdds~Gl 66 (98)
|.+++|||||=++.-.-|
T Consensus 50 gSGTSGmLRF~~~~Ge~F 67 (145)
T d1x99a_ 50 GSGTSGMLRFMSTKGERI 67 (145)
T ss_dssp STTCEEEEEEEETTCCEE
T ss_pred CCCCceeEEEEcCCCCEE
Confidence 346889999988664433
No 5
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.47 E-value=17 Score=21.71 Aligned_cols=11 Identities=55% Similarity=0.960 Sum_probs=9.0
Q ss_pred CccceeeeecC
Q psy424 52 SGGMWRYYTDD 62 (98)
Q Consensus 52 s~gmlrfYtdd 62 (98)
++|++|+|.++
T Consensus 1 ~gG~lkVy~~~ 11 (103)
T d1wxaa1 1 SGGTLRIYADS 11 (103)
T ss_dssp CCCEEEECCTT
T ss_pred CCcEEEEEcCc
Confidence 46899999865
No 6
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]}
Probab=16.09 E-value=35 Score=23.35 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=12.5
Q ss_pred ccceeeeecCCCceeEcceeee
Q psy424 53 GGMWRYYTDDSPGIKVGPVPVL 74 (98)
Q Consensus 53 ~gmlrfYtdds~Glkv~P~~VL 74 (98)
-||.++|+|| +.-|++||
T Consensus 9 iGMT~i~~~g----~~vpVTVl 26 (205)
T d2zjrb1 9 IGMTQIWKND----RAIPVTVV 26 (205)
T ss_dssp EEEEEEEETT----EEEEEEEE
T ss_pred ccceeEEeCC----CEEEEEEE
Confidence 4799999865 33466666
No 7
>d1y2ta_ b.97.1.2 (A:) TF antigen-binding lectin {Common mushroom (Agaricus bisporus) [TaxId: 5341]}
Probab=15.91 E-value=30 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=12.0
Q ss_pred CCCCccceeeeecCCC
Q psy424 49 GAGSGGMWRYYTDDSP 64 (98)
Q Consensus 49 g~ss~gmlrfYtdds~ 64 (98)
|.+++|||||=+.+..
T Consensus 46 gSGTSGmLRF~~~~g~ 61 (142)
T d1y2ta_ 46 GSGTSGSLRFVSSDTD 61 (142)
T ss_dssp SSSCEEEEEEEETTTT
T ss_pred cCCCceeEEEEeCCCC
Confidence 3468899999877653
No 8
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus thermophilus [TaxId: 274]}
Probab=13.50 E-value=46 Score=22.25 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=13.8
Q ss_pred CccceeeeecCCCceeEcceeeehh
Q psy424 52 SGGMWRYYTDDSPGIKVGPVPVLVM 76 (98)
Q Consensus 52 s~gmlrfYtdds~Glkv~P~~VLv~ 76 (98)
.-||.++|+|+ +.-|++||=+
T Consensus 8 KiGMT~i~~~g----~~vpVTVlev 28 (205)
T d2j01e1 8 KVGMTRIFRDD----RAVPVTVILA 28 (205)
T ss_dssp EEEEEEEEETT----EEEEEEEEEE
T ss_pred ecCCeeEEeCC----CEEEEEEEEe
Confidence 45899999864 2337777644
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.19 E-value=51 Score=21.72 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=18.0
Q ss_pred eeeehhhHHHHHHHHHHHHhhhc
Q psy424 71 VPVLVMSLLFIASVFMLHIWGKY 93 (98)
Q Consensus 71 ~~VLv~Sl~FI~~V~lLHI~gK~ 93 (98)
..|+...++||++-+++++|-+.
T Consensus 76 K~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888664
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.06 E-value=60 Score=17.50 Aligned_cols=7 Identities=29% Similarity=0.805 Sum_probs=5.0
Q ss_pred HHhhhcc
Q psy424 88 HIWGKYT 94 (98)
Q Consensus 88 HI~gK~~ 94 (98)
|+|+.+.
T Consensus 30 ~~Ws~lK 36 (46)
T d1ppjd2 30 HKWSVLK 36 (46)
T ss_dssp HHHHHHH
T ss_pred Hhhhhcc
Confidence 8887664
Done!