RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy424
         (98 letters)



>d2biba1 b.109.1.1 (A:309-541) Teichoic acid phosphorylcholine
          esterase Pce (LytD), C-terminal domain {Streptococcus
          pneumoniae [TaxId: 1313]}
          Length = 233

 Score = 22.7 bits (47), Expect = 9.7
 Identities = 6/17 (35%), Positives = 7/17 (41%)

Query: 52 SGGMWRYYTDDSPGIKV 68
          + G W Y   DS G   
Sbjct: 10 AYGNWWYQAPDSTGEYA 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.392 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,229
Number of extensions: 13586
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 3
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)