BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4241
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BQP|A Chain A, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQP|B Chain B, Crystal Structure Of Human Saposin D (Orthorhombic)
pdb|3BQQ|C Chain C, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|A Chain A, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|B Chain B, Crystal Structure Of Human Saposin D (Triclinic)
pdb|3BQQ|D Chain D, Crystal Structure Of Human Saposin D (Triclinic)
Length = 80
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
C++CK +VG L+ N T+Q++ A E C+ +P ++ CD+ V E+ P LIE+L
Sbjct: 5 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ-CDQFVAEYEPVLIEILV 63
Query: 153 SQMNPDVVCSVAGLC 167
M+P VC G C
Sbjct: 64 EVMDPSFVCLKIGAC 78
>pdb|2RB3|A Chain A, Crystal Structure Of Human Saposin D
pdb|2RB3|B Chain B, Crystal Structure Of Human Saposin D
pdb|2RB3|C Chain C, Crystal Structure Of Human Saposin D
pdb|2RB3|D Chain D, Crystal Structure Of Human Saposin D
Length = 85
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
C++CK +VG L+ N T+Q++ A E C+ +P ++ CD+ V E+ P LIE+L
Sbjct: 4 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ-CDQFVAEYEPVLIEILV 62
Query: 153 SQMNPDVVCSVAGLC 167
M+P VC G C
Sbjct: 63 EVMDPSFVCLKIGAC 77
>pdb|2R0R|A Chain A, Crystal Structure Of Human Saposin D Variant Sapd K9e
pdb|2R0R|B Chain B, Crystal Structure Of Human Saposin D Variant Sapd K9e
Length = 85
Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
C++C+ +VG L+ N T+Q++ A E C+ +P ++ CD+ V E+ P LIE+L
Sbjct: 4 CEVCEKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ-CDQFVAEYEPVLIEILV 62
Query: 153 SQMNPDVVCSVAGLC 167
M+P VC G C
Sbjct: 63 EVMDPSFVCLKIGAC 77
>pdb|2R1Q|A Chain A, Crystal Structure Of Iodinated Human Saposin D In Space
Group C2221
Length = 85
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
C++CK +VG L+ N T+Q++ A E C+ +P ++ CD+ V E P LIE+L
Sbjct: 4 CEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLP-DPYQKQCDQFVAEXEPVLIEILV 62
Query: 153 SQMNPDVVCSVAGLC 167
M+P VC G C
Sbjct: 63 EVMDPSFVCLKIGAC 77
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
C ICK++V A D L+ N T++++ E +C+ +P + C ++VD ++P +++++
Sbjct: 6 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIK 65
Query: 153 SQMN-PDVVCSVAGLCNN 169
+M+ P VCS LC +
Sbjct: 66 GEMSRPGEVCSALNLCES 83
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
C ICK++V A D L+ N T++++ E +C+ +P C ++VD ++P +++++
Sbjct: 6 CDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKPNXSASCKEIVDSYLPVILDIIK 65
Query: 153 SQMN-PDVVCSVAGLCNN 169
+ + P VCS LC +
Sbjct: 66 GEXSRPGEVCSALNLCES 83
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 88 DGDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPEL 147
D D C++C+ +V + + +N+T++++ F+ C+ +P K + E C ++VD + +
Sbjct: 2 DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP-KSLSEECQEVVDTYGSSI 60
Query: 148 IEVLSSQMNPDVVCSVAGLCNNA 170
+ +L +++P++VCS+ LC+
Sbjct: 61 LSILLEEVSPELVCSMLHLCSGT 83
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 89 GDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELI 148
D C++C+ +V + + +N+T++++ F+ C+ +P K + E C ++VD + ++
Sbjct: 4 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP-KSLSEECQEVVDTYGSSIL 62
Query: 149 EVLSSQMNPDVVCSVAGLCNNA 170
+L +++P++VCS+ LC+
Sbjct: 63 SILLEEVSPELVCSMLHLCSGT 84
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 89 GDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELI 148
D C++C+ +V + + +N+T++++ F+ C+ +P K + E C ++VD + ++
Sbjct: 3 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP-KSLSEECQEVVDTYGSSIL 61
Query: 149 EVLSSQMNPDVVCSVAGLCNN 169
+L +++P++VCS+ LC+
Sbjct: 62 SILLEEVSPELVCSMLHLCSR 82
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 89 GDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELI 148
D C++C+ +V + + +N+T++++ F+ C+ +P K + E C ++VD + ++
Sbjct: 1 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP-KSLSEECQEVVDTYGSSIL 59
Query: 149 EVLSSQMNPDVVCSVAGLCNNAA 171
+L +++P++VCS+ LC+
Sbjct: 60 SILLEEVSPELVCSMLHLCSGLV 82
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 131 VIREGCDKLVDEFVPELIEVLSSQMNPDVVCSVAGLCN 168
V+ + C +V ++ +++++L ++ P +CS GLC
Sbjct: 284 VVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCT 321
>pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|B Chain B, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|C Chain C, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|D Chain D, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|E Chain E, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
pdb|1YO6|F Chain F, Crystal Structure Of The Putative Carbonyl Reductase
Sniffer Of Caenorhabditis Elegans
Length = 250
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 94 KICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLSS 153
K ++++ ARD E +LK++ + +++P+ V CDK +D FV ++ E++ S
Sbjct: 27 KNIRHIIATARDV----EKATELKSIKDSRVHVLPLTVT---CDKSLDTFVSKVGEIVGS 79
Query: 154 QMNPDVVCSVAGLCNNAAI 172
++ L NNA +
Sbjct: 80 D-------GLSLLINNAGV 91
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 136 CDKLVDEFVPELIEVLSSQMNPDVVCSVAGLC 167
C +V ++ + ++L S + PD VCS AGLC
Sbjct: 11 CKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLC 42
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 26/115 (22%)
Query: 51 ECARGQSFWCEDLASAASCGATGHCIQAVWSHMKVKEDGDDVCKICKNMVGQARDQLQSN 110
ECA G+SFW D + S +T Q A D
Sbjct: 142 ECATGESFW--DFLNKDSESSTLSMFQD----------------------AMASDSRMFK 177
Query: 111 ETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLSSQMNPDVVCSVAG 165
Q+ K VFEG +LV V G KL+ E P L + Q P VV ++ G
Sbjct: 178 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ--PQVVGNLTG 230
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 26/115 (22%)
Query: 51 ECARGQSFWCEDLASAASCGATGHCIQAVWSHMKVKEDGDDVCKICKNMVGQARDQLQSN 110
ECA G+SFW D + S +T Q A D
Sbjct: 145 ECATGESFW--DFLNKDSESSTLSMFQD----------------------AMASDSRMFK 180
Query: 111 ETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLSSQMNPDVVCSVAG 165
Q+ K VFEG +LV V G KL+ E P L + Q P VV ++ G
Sbjct: 181 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ--PQVVGNLTG 233
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 26/115 (22%)
Query: 51 ECARGQSFWCEDLASAASCGATGHCIQAVWSHMKVKEDGDDVCKICKNMVGQARDQLQSN 110
ECA G+SFW D + S +T Q A D
Sbjct: 146 ECATGESFW--DFLNKDSESSTLSMFQD----------------------AMASDSRMFK 181
Query: 111 ETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLSSQMNPDVVCSVAG 165
Q+ K VFEG +LV V G KL+ E P L + Q P VV ++ G
Sbjct: 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ--PQVVGNLTG 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,334,197
Number of Sequences: 62578
Number of extensions: 303874
Number of successful extensions: 661
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 29
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)