RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4241
(305 letters)
>gnl|CDD|214797 smart00741, SapB, Saposin (B) Domains. Present in multiple copies
in prosaposin and in pulmonary surfactant-associated
protein B. In plant aspartic proteinases, a saposin
domain is circularly permuted. This causes the
prediction algorithm to predict two such domains, where
only one is truly present.
Length = 76
Score = 74.8 bits (184), Expect = 2e-17
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 91 DVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEV 150
+C++C+ +V Q + L+ N+T++++K E C +P + + C + VD++ PE+I++
Sbjct: 1 LLCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQ-CKEFVDQYGPEIIDL 59
Query: 151 LSSQMNPDVVCSVAGLC 167
L ++P VC GLC
Sbjct: 60 LEQGLDPKDVCQKLGLC 76
>gnl|CDD|202150 pfam02199, SapA, Saposin A-type domain.
Length = 34
Score = 54.2 bits (131), Expect = 3e-10
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 49 SPECARGQSFWCEDLASAASCGATGHCIQAVWS 81
+ EC G S+WC++L +A C A HC Q VW+
Sbjct: 2 TDECTWGPSYWCQNLETAKQCNAVEHCQQTVWN 34
>gnl|CDD|128465 smart00162, SAPA, Saposin/surfactant protein-B A-type DOMAIN.
Present as four and three degenerate copies,
respectively, in prosaposin and surfactant protein B.
Single copies in acid sphingomyelinase, NK-lysin
amoebapores and granulysin. Putative phospholipid
membrane binding domains.
Length = 34
Score = 49.8 bits (119), Expect = 1e-08
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 51 ECARGQSFWCEDLASAASCGATGHCIQAVWS 81
C G S WC++L +A+ C A HC+Q VWS
Sbjct: 4 RCTWGPSVWCQNLETASQCNAVKHCLQRVWS 34
>gnl|CDD|112314 pfam03489, SapB_2, Saposin-like type B, region 2.
Length = 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 133 REGCDKLVDEFVPELIEVLSSQMNPDVVCSVAGLC 167
+ C + VD++ P +I++L S ++P VCS GLC
Sbjct: 1 SDQCKQFVDQYGPLIIDLLVSGLDPKEVCSQLGLC 35
Score = 28.7 bits (65), Expect = 0.32
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 213 LSSQMNPDVVCSVAGLC 229
L S ++P VCS GLC
Sbjct: 19 LVSGLDPKEVCSQLGLC 35
>gnl|CDD|191220 pfam05184, SapB_1, Saposin-like type B, region 1.
Length = 39
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 90 DDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVP 128
D+C +C+ +V + L+ N+T++++ E C+L+P
Sbjct: 1 GDLCDLCEFLVKEVEKLLKDNKTEEEIIEALEKVCDLLP 39
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 32.9 bits (75), Expect = 0.19
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 10 KTDNGSLQNSPLPEIPEPHPDSTASPLSSPL-NSARLSPSSPECARGQSFWCEDL 63
K D +++NS P +P D S P NS R S SS + F +DL
Sbjct: 268 KIDWNNIRNSLPPFVPTLKSDDDTSNFDEPEKNSTRRSQSSTTQLKPNGFSGKDL 322
>gnl|CDD|215582 PLN03111, PLN03111, DNA-directed RNA polymerase II subunit family
protein; Provisional.
Length = 206
Score = 30.3 bits (69), Expect = 0.86
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 107 LQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLSSQMNP 157
+S+ +++ + F V VK I+ +++ DE V I VL S++ P
Sbjct: 60 KRSDPSKK-ILVFFPEE-EKVGVKTIKTYAERMKDENVSRAILVLQSKLTP 108
>gnl|CDD|151804 pfam11363, DUF3164, Protein of unknown function (DUF3164). This
family of proteins has no known function.
Length = 195
Score = 29.9 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 125 NLVPVKVIREGCDKLVDEFVPELI---EVLSSQM 155
NLVP +I+ DKL DE V E++ + LS Q+
Sbjct: 8 NLVPESLIKP-IDKLRDELVREIVAKAKALSKQL 40
>gnl|CDD|234430 TIGR03986, TIGR03986, CRISPR-associated protein. Members of this
protein family, part of the larger RAMP family, are
found exclusively in species with CRISPR systems, in
local contexts containing other RAMP (Repeat-Associated
Mystery Proteins).
Length = 562
Score = 30.1 bits (68), Expect = 1.6
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 27/146 (18%)
Query: 86 KEDGDDVCKICKNMVGQARD----QLQSNETQ-QDLKAVFEGSCN-------LVPVKVIR 133
KE +D + + Q RD L + + K VF + + R
Sbjct: 251 KELIEDYQEDESRQLLQRRDNGSSDLLKEYRKLPEGKPVFYVELDKGGKVTSFGHSPIYR 310
Query: 134 EGCDKLVDEFVPELIEVLSSQMNPDVVCSVAGLCNNAAIDRLLLTAAGDHRDLHS---FP 190
++ + + +PE +E + D ++ G AG+ + L F
Sbjct: 311 LAYERSIGDLLPEHLEPTKDEELLDPAEAIFGWVK---------GEAGNTQALAGRVSFS 361
Query: 191 TRRLKKKKKRCLLTEETVTPKVLSSQ 216
L K E VT +L S
Sbjct: 362 DAVLVKPGPEFD---EEVTLAILGSP 384
>gnl|CDD|178937 PRK00227, glnD, PII uridylyl-transferase; Provisional.
Length = 693
Score = 29.3 bits (66), Expect = 2.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 21 LPEIPEPHPDSTASP----LSSPLNSARL 45
PE+PEP P S A LSSP+NS R+
Sbjct: 319 CPELPEPWPASAAGDFFRLLSSPVNSRRV 347
>gnl|CDD|204272 pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) is a widespread family of prokaryotic direct
repeats with spacers of unique sequence between
consecutive repeats. This protein family, typified by
YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas)
family strictly associated with the Ypest subtype of
CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas
Subtype Ypest protein 4.
Length = 182
Score = 27.2 bits (61), Expect = 7.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 188 SFPTRRLKKKKKRCLLTEETVTPKVLSSQMN 218
S P R ++ KR LTEE ++ S
Sbjct: 102 SSPARLRRRLMKRAGLTEEEARARIPKSLEK 132
>gnl|CDD|214533 smart00137, MAM, Domain in meprin, A5, receptor protein tyrosine
phosphatase mu (and others). Likely to have an adhesive
function. Mutations in the meprin MAM domain affect
noncovalent associations within meprin oligomers. In
receptor tyrosine phosphatase mu-like molecules the MAM
domain is important for homophilic cell-cell
interactions.
Length = 161
Score = 26.9 bits (60), Expect = 9.4
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 71 ATGHCIQAVWSHM----------KVKEDGDDVCKICKNMVGQARDQ-----LQSNETQQD 115
+ HC+ W +M V+E+ + + G Q + + Q
Sbjct: 74 RSTHCLT-FWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSSWPQP 132
Query: 116 LKAVFEGSCN 125
+ VFEG+
Sbjct: 133 FQVVFEGTRG 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.391
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,703,698
Number of extensions: 1312681
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 21
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)