RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4241
(305 letters)
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein,
galactosylcera lauryldimethylamine-N-oxide, lipid,
detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB:
2dob_A*
Length = 83
Score = 88.9 bits (220), Expect = 1e-22
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 89 GDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELI 148
G C ICK++V A D L+ N T++++ E +C+ +P + C ++VD ++P ++
Sbjct: 2 GSLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVIL 61
Query: 149 EVLSSQMN-PDVVCSVAGLCNN 169
+++ +M+ P VCS LC +
Sbjct: 62 DIIKGEMSRPGEVCSALNLCES 83
Score = 26.8 bits (59), Expect = 2.5
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 211 KVLSSQMN-PDVVCSVAGLCNN 231
++ +M+ P VCS LC +
Sbjct: 62 DIIKGEMSRPGEVCSALNLCES 83
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid binding protein, acid ceramidase,farber disease,
lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C
2rb3_A 2r1q_A 2r0r_A
Length = 80
Score = 74.6 bits (183), Expect = 2e-17
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 90 DDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIE 149
C++CK +VG L+ N T+Q++ A E C+ +P ++ CD+ V E+ P LIE
Sbjct: 2 GGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQ-CDQFVAEYEPVLIE 60
Query: 150 VLSSQMNPDVVCSVAGLCN 168
+L M+P VC G C
Sbjct: 61 ILVEVMDPSFVCLKIGACP 79
Score = 28.0 bits (62), Expect = 1.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 211 KVLSSQMNPDVVCSVAGLCN 230
++L M+P VC G C
Sbjct: 60 EILVEVMDPSFVCLKIGACP 79
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative
splicing, disease mutation, gaucher disease,
glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens}
SCOP: a.64.1.1 PDB: 2z9a_A
Length = 91
Score = 74.7 bits (183), Expect = 3e-17
Identities = 20/86 (23%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 GDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELI 148
D C++C+ +V + + +N+T++++ F+ C+ +P + E C ++VD + ++
Sbjct: 4 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEE-CQEVVDTYGSSIL 62
Query: 149 EVLSSQMNPDVVCSVAGLCNNAAIDR 174
+L +++P++VCS+ LC+
Sbjct: 63 SILLEEVSPELVCSMLHLCSGTRHHH 88
Score = 27.7 bits (61), Expect = 1.8
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 211 KVLSSQMNPDVVCSVAGLCNNAAIDR 236
+L +++P++VCS+ LC+
Sbjct: 63 SILLEEVSPELVCSMLHLCSGTRHHH 88
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid-binding prote binding protein; 2.40A {Homo
sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Length = 83
Score = 73.5 bits (180), Expect = 5e-17
Identities = 22/82 (26%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 88 DGDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPEL 147
D D C++C+ +V + + +N+T++++ F+ C+ +P K + E C ++VD + +
Sbjct: 2 DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP-KSLSEECQEVVDTYGSSI 60
Query: 148 IEVLSSQMNPDVVCSVAGLCNN 169
+ +L +++P++VCS+ LC+
Sbjct: 61 LSILLEEVSPELVCSMLHLCSG 82
Score = 26.9 bits (59), Expect = 2.4
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 211 KVLSSQMNPDVVCSVAGLCNN 231
+L +++P++VCS+ LC+
Sbjct: 62 SILLEEVSPELVCSMLHLCSG 82
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic
peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Length = 78
Score = 68.0 bits (166), Expect = 5e-15
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
C+ C+ ++ + D + + + C+ + + +R C K++ F+ + +
Sbjct: 4 CESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI--LRGLCKKIMRSFLRRISWDIL 61
Query: 153 SQMNPDVVCSVAGLC 167
+ P +C +C
Sbjct: 62 TGKKPQAICVDIKIC 76
Score = 25.3 bits (55), Expect = 9.8
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 192 RRLKKKKKRCLLTEETVTPKV---LSSQMNPDVVCSVAGLC 229
+LK + C + ++ + + P +C +C
Sbjct: 36 DKLKILRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKIC 76
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator
protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Length = 81
Score = 52.3 bits (125), Expect = 3e-09
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 89 GDDVCKICKNMVGQARDQLQSNET-QQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPEL 147
DVC+ C MV + +++N T Q L + C+ + + C + ++
Sbjct: 2 DGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI-CKNYISQYSEIA 60
Query: 148 IEVLSSQMNPDVVCSVAGLC 167
I+++ M P +C++ G C
Sbjct: 61 IQMM-MHMQPKEICALVGFC 79
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like
fold, antimicrobial protein; NMR {Caenorhabditis
elegans} PDB: 2jsa_A
Length = 99
Score = 45.6 bits (107), Expect = 9e-07
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 81 SHMKVKEDGDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCN--LVPVKVIREGCDK 138
S ++ + C++C+ +V + + +K F+ C + CD
Sbjct: 12 SGIEGRGRSALSCQMCELVVKKYEGSADKDAN--VIKKDFDAECKKLFHTIPFGTRECDH 69
Query: 139 LVDEFVPELIEVLSSQMNPDVVCSVAGLC 167
V+ V +I L P VC+ C
Sbjct: 70 YVNSKVDPIIHELEGGTAPKDVCTKLNEC 98
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Length = 108
Score = 42.0 bits (98), Expect = 2e-05
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 131 VIREGCDKLVDEFVPELIEVLSSQMNPDVVCSVAGLC 167
++ C +V ++ + ++L S + PD VCS AGLC
Sbjct: 6 IVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLC 42
Score = 39.7 bits (92), Expect = 1e-04
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 81 SHMKVKEDGDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVP 128
+C C+ V ++QL+ T++ + C +P
Sbjct: 61 ETEGSSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108
Score = 29.3 bits (65), Expect = 0.65
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 211 KVLSSQMNPDVVCSVAGLCNNAAIDRLLLTAAPAPKTSTPTKD--DNSDCKNC 261
+L S + PD VCS AGLC + + T + C C
Sbjct: 24 DLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEGSSVGEAPLCTAC 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 78/234 (33%)
Query: 99 MVGQ-----ARDQLQSNETQQDLK-AVF---EGSCNLVPVKVIREGCDKLVDEFVPELIE 149
++G A D S + Q + +F +CN E V E+++
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--------------SPETVLEMLQ 203
Query: 150 VLSSQMNPDVVCSVAGLCN-----NAAIDRLLLTAAGDHRDLHSFPTRRL--KKKKKRCL 202
L Q++P+ N ++ L RRL K + CL
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL----------------RRLLKSKPYENCL 247
Query: 203 LTEETVTPKVLSSQMNPDVVCSVAGLCNNAAIDRLLLT--------AAPAPKTSTPTKDD 254
L VL + N + C ++LLT A T+ + D
Sbjct: 248 L--------VLLNVQNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 255 NSDC----KNCASFADLVTKKFNAASKQDVTNDPFG----SEVLSQAP--WSGW 298
+S + + + + ++ +T +P +E + W W
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 40/152 (26%)
Query: 5 RVRKKKTDNGSLQNSPLPEIP--EPHPDSTAS--PLSSPLNSARLSPSSPEC-----ARG 55
+RK K +G Q+ IP E + P++SP +S L P+S
Sbjct: 392 TLRKAKAPSGLDQS----RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 56 QSFWCEDLASAASCGATGHCIQAVWSHMKVKEDGDDVCKICKNMVGQARDQLQSN----E 111
SF +D+ I V+ DG D+ + ++ + D + E
Sbjct: 448 VSFNAKDIQ-----------I-PVYD----TFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 112 TQQDLKA----VFE--GSCNLVP-VKVIREGC 136
T KA F G+ L ++G
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR
{Entamoeba histolytica} SCOP: a.64.1.4
Length = 77
Score = 36.2 bits (83), Expect = 0.001
Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 89 GDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELI 148
G+ +C +C ++ + L + + +K CN I C K++D + +LI
Sbjct: 1 GEILCNLCTGLINTL-ENLLTTKGADKVKDYISSLCNKAS-GFIATLCTKVLDFGIDKLI 58
Query: 149 EVLSSQMNPDVVCSVAGLC 167
+++ +++ + +C+ C
Sbjct: 59 QLIEDKVDANAICAKIHAC 77
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein;
HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Length = 74
Score = 32.4 bits (73), Expect = 0.024
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
+ C +V Q ++ TQ+ + C + R+ C + + +I+ L
Sbjct: 4 YRTCLTIV-QKLKKMVDKPTQRSVSNAATRVCRTGRSR-WRDVCRNFMRRYQSRVIQGLV 61
Query: 153 SQMNPDVVC 161
+ +C
Sbjct: 62 AGETAQQIC 70
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding
protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Length = 87
Score = 29.8 bits (66), Expect = 0.25
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 86 KEDGDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCN--LVPVKVIREGCDKLVDEF 143
VC+ICK V + ++ L+ F C + + + C L
Sbjct: 6 NNSNVIVCEICKMAVKLIVPEA--DKDLDQLEKEFIQGCMTLIGWLPYAEKECKALAKIE 63
Query: 144 VPELIEVLSSQMNPDVVCSVAGLC 167
+ + +L + P+ +C+ C
Sbjct: 64 MGAIKTLLENGSAPEEICTTLHAC 87
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 29.4 bits (65), Expect = 1.7
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 75 CIQAVWSHMKVKEDGDDVCKICKNMVGQARDQLQSNETQQDLK-AVFEGSCNLVPVKVIR 133
+ A ++ K D +I ++ QS ++ LV +V+
Sbjct: 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLV--EVLG 640
Query: 134 EGCDKLVDEFVPELIEVLSSQMNPDVVCSVAGL 166
K ++ F P L L + V + GL
Sbjct: 641 GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGL 673
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 3.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 259 KNCASFADLVTKKFNAASKQDV 280
K A + L+ FN SKQDV
Sbjct: 525 KYGAKGSTLIVVPFNQGSKQDV 546
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 26.8 bits (60), Expect = 7.8
Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 16/83 (19%)
Query: 98 NMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKV-IREGCDKLVDEFVPELIEVLSSQMN 156
N+ R + DL + G V V R CD L V E +
Sbjct: 36 NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGI------ 89
Query: 157 PDVVCSVAGLCNNAAI--DRLLL 177
DV +C NA + D L
Sbjct: 90 -DV------VCANAGVFPDAPLA 105
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 26.8 bits (60), Expect = 9.0
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 119 VFEGSCN---------LVPVKVIREGCDKLVDEFVPELIEVLSSQMNPDVVC 161
VF C LV VK +++ +F E E+L++ + +V
Sbjct: 31 VFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQRE-AELLTNLQHEHIVK 81
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 26.9 bits (60), Expect = 9.1
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 116 LKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLSSQMNPDVV 160
+ + + +V VK ++ ++ + +F E IE+L S + ++V
Sbjct: 31 YDPLQDNTGEVVAVKKLQHSTEEHLRDFERE-IEILKSLQHDNIV 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.391
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,450,671
Number of extensions: 251335
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 33
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)