RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4241
(305 letters)
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 77.4 bits (190), Expect = 7e-19
Identities = 20/79 (25%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 90 DDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIE 149
D C++C+ +V + + +N+T++++ F+ C+ +P + E C ++VD + ++
Sbjct: 1 DVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEE-CQEVVDTYGSSILS 59
Query: 150 VLSSQMNPDVVCSVAGLCN 168
+L +++P++VCS+ LC+
Sbjct: 60 ILLEEVSPELVCSMLHLCS 78
Score = 28.4 bits (63), Expect = 0.24
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 211 KVLSSQMNPDVVCSVAGLCN 230
+L +++P++VCS+ LC+
Sbjct: 59 SILLEEVSPELVCSMLHLCS 78
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 74.3 bits (182), Expect = 8e-18
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 91 DVCKICKNMVGQARDQLQSNETQQD-LKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIE 149
DVC+ C MV + +++N T L + C+ + + + C + ++ I+
Sbjct: 2 DVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLG-PGMADICKNYISQYSEIAIQ 60
Query: 150 VLSSQMNPDVVCSVAGLCN 168
++ M P +C++ G C+
Sbjct: 61 MM-MHMQPKEICALVGFCD 78
Score = 26.5 bits (58), Expect = 1.2
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 215 SQMNPDVVCSVAGLCN 230
M P +C++ G C+
Sbjct: 63 MHMQPKEICALVGFCD 78
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId:
9823]}
Length = 78
Score = 72.0 bits (176), Expect = 7e-17
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 91 DVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEV 150
C+ C+ ++ + D + + + C+ + + +R C K++ F+ +
Sbjct: 2 YFCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI--LRGLCKKIMRSFLRRISWD 59
Query: 151 LSSQMNPDVVCSVAGLC 167
+ + P +C +C
Sbjct: 60 ILTGKKPQAICVDIKIC 76
Score = 26.5 bits (58), Expect = 1.1
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 211 KVLSSQMNPDVVCSVAGLC 229
+ + P +C +C
Sbjct: 58 WDILTGKKPQAICVDIKIC 76
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId:
5759]}
Length = 77
Score = 70.0 bits (171), Expect = 3e-16
Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 89 GDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELI 148
G+ +C +C ++ + L + + +K CN I C K++D + +LI
Sbjct: 1 GEILCNLCTGLINTL-ENLLTTKGADKVKDYISSLCNKAS-GFIATLCTKVLDFGIDKLI 58
Query: 149 EVLSSQMNPDVVCSVAGLC 167
+++ +++ + +C+ C
Sbjct: 59 QLIEDKVDANAICAKIHAC 77
Score = 26.1 bits (57), Expect = 1.6
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 211 KVLSSQMNPDVVCSVAGLC 229
+++ +++ + +C+ C
Sbjct: 59 QLIEDKVDANAICAKIHAC 77
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 64.5 bits (157), Expect = 3e-14
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 93 CKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVPVKVIREGCDKLVDEFVPELIEVLS 152
+ C +V + ++ TQ+ + C + R+ C + + +I+ L
Sbjct: 4 YRTCLTIVQKL-KKMVDKPTQRSVSNAATRVCRTGRSR-WRDVCRNFMRRYQSRVIQGLV 61
Query: 153 SQMNPDVVCS 162
+ +C
Sbjct: 62 AGETAQQICE 71
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum
vulgare) [TaxId: 4513]}
Length = 104
Score = 43.5 bits (102), Expect = 2e-06
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 131 VIREGCDKLVDEFVPELIEVLSSQMNPDVVCSVAGLCNNAAIDRL 175
V+ + C +V ++ +++++L ++ P +CS GLC +
Sbjct: 1 VVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGV 45
Score = 41.6 bits (97), Expect = 9e-06
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 84 KVKEDGDDVCKICKNMVGQARDQLQSNETQQDLKAVFEGSCNLVP 128
D +C C+ V ++QL N+TQ + CN +P
Sbjct: 60 SNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLP 104
Score = 29.7 bits (66), Expect = 0.14
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 211 KVLSSQMNPDVVCSVAGLCNNAAIDRLLLTAAPAPKTSTPTKDDNSD---CKNCASFADL 267
+L ++ P +CS GLC + + C C
Sbjct: 19 DLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVW 78
Query: 268 VTKKFNAASKQD 279
+ + QD
Sbjct: 79 MQNQLAQNKTQD 90
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 27.0 bits (59), Expect = 2.8
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 52 CARGQSFWCEDLASAASCGATGHCIQAVWSHMKVKEDGD-DVCKICKNMVGQARDQLQ 108
R + + AS H + + + + I N V Q ++ L+
Sbjct: 174 YQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILR 231
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 7.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 128 PVKVIREGCDKLVDEFVPELIEVLSSQMNPDVVCSVAGLC 167
P+ +I +L PE +++LS+ P VV ++ GL
Sbjct: 4 PMCLIENTNGRL--MANPEALKILSAITQPMVVVAIVGLY 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.391
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,094,304
Number of extensions: 48620
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 14
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)