BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4242
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZMU0|RT07_CHICK 28S ribosomal protein S7, mitochondrial OS=Gallus gallus GN=MRPS7
PE=2 SV=2
Length = 233
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
MMK GNK LAR + T+++IKR Q+EKY++A D+E+E + +PYVI +A++N +PI+
Sbjct: 89 MMKDGNKVLARSLMAQTLENIKRKQLEKYHRA-PDDEKERVECNPYVIFHQALKNCQPII 147
Query: 61 KLRSIKRAAVTYQM 74
L +I R TYQ+
Sbjct: 148 GLSNITRGGKTYQV 161
>sp|Q6DDY9|RT07_XENLA 28S ribosomal protein S7, mitochondrial OS=Xenopus laevis GN=mrps7
PE=2 SV=1
Length = 233
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
MMK GNK L+R + T++ IKR Q+EKY KA +EER SI +PY I +A+ N +PI+
Sbjct: 89 MMKGGNKNLSRSIMNQTLEQIKRTQLEKYYKA-PEEERASIECNPYTIFHQALHNCQPII 147
Query: 61 KLRSIKRAAVTYQM 74
L SI R +YQ+
Sbjct: 148 GLTSILRGGKSYQV 161
>sp|Q498Z6|RT07_DANRE 28S ribosomal protein S7, mitochondrial OS=Danio rerio GN=mrps7
PE=2 SV=1
Length = 228
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
MM GNK LAR + T+++IKR Q+EKY+K+ + +RE I +PY I +A+EN KP++
Sbjct: 84 MMYDGNKVLARGIMTQTLETIKRKQVEKYHKSPA-AKREEIECNPYAIFHQAMENCKPVI 142
Query: 61 KLRSIKRAAVTYQM 74
L SI++ YQ+
Sbjct: 143 GLASIQKGGKFYQV 156
>sp|Q3T040|RT07_BOVIN 28S ribosomal protein S7, mitochondrial OS=Bos taurus GN=MRPS7 PE=1
SV=1
Length = 242
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
MMK GNK LAR + T++++KR Q EKY+ A S EE+ ++ +PY I +A++N +P++
Sbjct: 98 MMKGGNKILARSLMTQTLEAVKRKQFEKYH-AASAEEQATVERNPYTIFHQALKNCEPVI 156
Query: 61 KLRSIKRAAVTYQM 74
L I + YQ+
Sbjct: 157 GLVPILKGGHFYQV 170
>sp|Q80X85|RT07_MOUSE 28S ribosomal protein S7, mitochondrial OS=Mus musculus GN=Mrps7
PE=2 SV=1
Length = 242
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
MMK GNK LAR + T++++KR Q EKY +A S EE+ +I +PY I +A++N +P++
Sbjct: 98 MMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYRIFHEALKNCEPVI 156
Query: 61 KLRSIKRAAVTYQM 74
L I + YQ+
Sbjct: 157 GLVPILKGGHFYQV 170
>sp|Q9VKX4|RT07_DROME 28S ribosomal protein S7, mitochondrial OS=Drosophila melanogaster
GN=mRpS7 PE=2 SV=1
Length = 218
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 3 KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 62
KKGN LAR + T++ IKR Q E N A E+ +I +P ++ +A+EN +P+L++
Sbjct: 78 KKGNSALARTLLSKTLELIKRTQTEHMNLAKG--EKTTINTNPETLLKQAVENCRPLLQV 135
Query: 63 RSIKRAAVTYQM 74
+IKR VTYQ+
Sbjct: 136 TAIKRGGVTYQV 147
>sp|Q5I0K8|RT07_RAT 28S ribosomal protein S7, mitochondrial OS=Rattus norvegicus
GN=Mrps7 PE=2 SV=2
Length = 242
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
MMK GNK LAR + T++++KR Q EKY +A S EE+ +I +PY I +A+ N +P++
Sbjct: 98 MMKGGNKVLARSLMAQTLEAVKRKQFEKY-RAASAEEQATIERNPYKIFHEALRNCEPVI 156
Query: 61 KLRSIKRAAVTYQM 74
L I + YQ+
Sbjct: 157 GLVPILKGGHFYQV 170
>sp|Q60R52|RT07_CAEBR 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis briggsae
GN=CBG21526 PE=3 SV=2
Length = 222
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 3 KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 62
K G KE +R+ ++ IKR Q + + KA +DEE++SI LDP+VI K I+N P++KL
Sbjct: 80 KDGEKETSRKNVLSALEIIKRRQYKAWTKA-NDEEKKSIELDPFVIARKGIKNCHPLMKL 138
Query: 63 RSIKRAAVTYQM 74
+ + R TYQ+
Sbjct: 139 QGVTRGGTTYQV 150
>sp|Q95Q11|RT07_CAEEL 28S ribosomal protein S7, mitochondrial OS=Caenorhabditis elegans
GN=Y57G11C.34 PE=3 SV=2
Length = 222
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 3 KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKL 62
K G KE +R+ ++ IKR Q + + KA S+EE++SI LDP+++ K I+N P++KL
Sbjct: 80 KDGEKETSRKNVLSALEIIKRRQYKAWAKA-SEEEKKSIELDPFLVAKKGIKNCHPLMKL 138
Query: 63 RSIKRAAVTYQM 74
+ + R TYQ+
Sbjct: 139 QGVTRGGTTYQV 150
>sp|Q9Y2R9|RT07_HUMAN 28S ribosomal protein S7, mitochondrial OS=Homo sapiens GN=MRPS7
PE=1 SV=2
Length = 242
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
MM GNK LAR + T++++KR Q EKY+ A S EE+ +I +PY I +A++N +P++
Sbjct: 98 MMIGGNKVLARSLMIQTLEAVKRKQFEKYH-AASAEEQATIERNPYTIFHQALKNCEPMI 156
Query: 61 KLRSIKRAAVTYQM 74
L I + YQ+
Sbjct: 157 GLVPILKGGRFYQV 170
>sp|Q47LI9|RS7_THEFY 30S ribosomal protein S7 OS=Thermobifida fusca (strain YX)
GN=rpsG PE=3 SV=1
Length = 156
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 38 RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
RE DP VI+ +AI+N KP L++RS + TYQ+
Sbjct: 51 REKTGQDPLVILKRAIDNVKPTLEVRSRRVGGATYQV 87
>sp|A0PM40|RS7_MYCUA 30S ribosomal protein S7 OS=Mycobacterium ulcerans (strain Agy99)
GN=rpsG PE=3 SV=1
Length = 156
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R++ DP + + +A++N KP+L++RS + TYQ+
Sbjct: 48 EQARDNTGTDPVITLKRALDNVKPVLEVRSRRVGGATYQV 87
>sp|P41193|RS7_MYCSM 30S ribosomal protein S7 OS=Mycobacterium smegmatis GN=rpsG PE=3
SV=2
Length = 156
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|A0QS97|RS7_MYCS2 30S ribosomal protein S7 OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=rpsG PE=1 SV=1
Length = 156
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|Q0SFF2|RS7_RHOSR 30S ribosomal protein S7 OS=Rhodococcus sp. (strain RHA1) GN=rpsG
PE=3 SV=1
Length = 156
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|C0ZVT5|RS7_RHOE4 30S ribosomal protein S7 OS=Rhodococcus erythropolis (strain PR4
/ NBRC 100887) GN=rpsG PE=3 SV=1
Length = 156
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|Q06J33|RR7_BIGNA 30S ribosomal protein S7, chloroplastic OS=Bigelowiella natans
GN=rps7 PE=3 SV=1
Length = 159
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+MKKGNK LAR++ ++K I+ + + DP I+++A+ N P +
Sbjct: 30 IMKKGNKALARKIIYRSLKDIELVTKQ----------------DPIKIVEQAVSNVTPFV 73
Query: 61 KLRSIKRAAVTYQM 74
++RS + T Q+
Sbjct: 74 EIRSRRLGGSTTQI 87
>sp|C4LL65|RS7_CORK4 30S ribosomal protein S7 OS=Corynebacterium kroppenstedtii
(strain DSM 44385 / CCUG 35717) GN=rpsG PE=3 SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 38 RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
RE DP + + KA++N KP L++RS + TYQ+
Sbjct: 51 REKTGTDPVLTLKKALDNVKPTLEVRSRRVGGATYQV 87
>sp|A1T4L4|RS7_MYCVP 30S ribosomal protein S7 OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=rpsG PE=3 SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQAREKTGTDPVVTLKRAMDNVKPSLEVRSRRVGGATYQV 87
>sp|A4T1R4|RS7_MYCGI 30S ribosomal protein S7 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=rpsG PE=3 SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQAREKTGTDPVVTLKRAMDNVKPSLEVRSRRVGGATYQV 87
>sp|C1AYS5|RS7_RHOOB 30S ribosomal protein S7 OS=Rhodococcus opacus (strain B4)
GN=rpsG PE=3 SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 38 RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 51 REKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|Q4JT38|RS7_CORJK 30S ribosomal protein S7 OS=Corynebacterium jeikeium (strain
K411) GN=rpsG PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP + + KA++N KP L++RS + TYQ+
Sbjct: 48 EQCREKTGTDPILTLKKALDNVKPALEVRSRRVGGATYQV 87
>sp|B5YDT9|RS7_DICT6 30S ribosomal protein S7 OS=Dictyoglomus thermophilum (strain
ATCC 35947 / DSM 3960 / H-6-12) GN=rpsG PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 38 RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
RE DP V+++KA++N P+L++R + TYQ+
Sbjct: 51 REKTKQDPLVVLEKAVQNVTPLLEVRPRRVGGATYQV 87
>sp|B5Y991|RS7_COPPD 30S ribosomal protein S7 OS=Coprothermobacter proteolyticus
(strain ATCC 35245 / DSM 5265 / BT) GN=rpsG PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
DP ++ KAIENTKP+++ RS + YQ+
Sbjct: 57 DPIAVLTKAIENTKPLVETRSRRIGGAVYQI 87
>sp|B1VES9|RS7_CORU7 30S ribosomal protein S7 OS=Corynebacterium urealyticum (strain
ATCC 43042 / DSM 7109) GN=rpsG PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ RE DP + + KA++N KP L++RS + TYQ+
Sbjct: 48 EQCREKTGTDPVLTLKKALDNVKPALEVRSRRVGGATYQV 87
>sp|O21240|RT07_RECAM Ribosomal protein S7, mitochondrial OS=Reclinomonas americana
GN=RPS7 PE=3 SV=1
Length = 159
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 36 EERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
E R+ +DP ++ + AI NT P+++++SI+ A YQ+
Sbjct: 51 EIRKETSVDPIIVFNDAIRNTTPVVQVKSIRIAGSNYQV 89
>sp|Q1BDD5|RS7_MYCSS 30S ribosomal protein S7 OS=Mycobacterium sp. (strain MCS)
GN=rpsG PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|A1UBK9|RS7_MYCSK 30S ribosomal protein S7 OS=Mycobacterium sp. (strain KMS)
GN=rpsG PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|A3PV94|RS7_MYCSJ 30S ribosomal protein S7 OS=Mycobacterium sp. (strain JLS)
GN=rpsG PE=3 SV=1
Length = 156
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|Q73SD3|RS7_MYCPA 30S ribosomal protein S7 OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
+ RE DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 ENAREKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|A0QL37|RS7_MYCA1 30S ribosomal protein S7 OS=Mycobacterium avium (strain 104)
GN=rpsG PE=3 SV=1
Length = 156
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
+ RE DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 ENAREKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|Q6NJD7|RS7_CORDI 30S ribosomal protein S7 OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=rpsG PE=3
SV=1
Length = 155
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
D+ +E +DP + ++KA+ N KP L++RS + TYQ+
Sbjct: 47 DKCKEKTGIDPVLTLEKALGNIKPDLEVRSRRVGGATYQV 86
>sp|B1MGH9|RS7_MYCA9 30S ribosomal protein S7 OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP V + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVVTLKRAMDNVKPALEVRSRRVGGATYQV 87
>sp|A4FPM9|RS7_SACEN 30S ribosomal protein S7 OS=Saccharopolyspora erythraea (strain
NRRL 23338) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 22 KRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
KR E+ A + R+ DP V + +A++N KP L++RS + TYQ+
Sbjct: 35 KRSLAERIVYAALEGCRDKTGTDPVVTLKRALDNVKPTLEVRSRRVGGATYQV 87
>sp|B2GIL0|RS7_KOCRD 30S ribosomal protein S7 OS=Kocuria rhizophila (strain ATCC 9341
/ DSM 348 / NBRC 103217 / DC2201) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
DP + KA+EN KP L++RS + TYQ+
Sbjct: 57 DPVATLKKALENVKPALEVRSRRVGGATYQV 87
>sp|A8M533|RS7_SALAI 30S ribosomal protein S7 OS=Salinispora arenicola (strain
CNS-205) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 38 RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 51 REKSGTDPVVTLKRAMDNVKPTLEVRSRRVGGATYQV 87
>sp|A4XBQ0|RS7_SALTO 30S ribosomal protein S7 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 38 RESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
RE DP V + +A++N KP L++RS + TYQ+
Sbjct: 51 REKSGTDPVVTLKRAMDNVKPTLEVRSRRVGGATYQV 87
>sp|B0SSI1|RS7_LEPBP 30S ribosomal protein S7 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=rpsG PE=3 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
DP+ + +A+EN KP ++++S + VTYQ+
Sbjct: 58 DPFAVFQEALENAKPQVEVKSRRVGGVTYQV 88
>sp|B0SAF8|RS7_LEPBA 30S ribosomal protein S7 OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=rpsG PE=3 SV=1
Length = 157
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
DP+ + +A+EN KP ++++S + VTYQ+
Sbjct: 58 DPFAVFQEALENAKPQVEVKSRRVGGVTYQV 88
>sp|P41194|RS7_MYCTU 30S ribosomal protein S7 OS=Mycobacterium tuberculosis GN=rpsG
PE=3 SV=3
Length = 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|A5U069|RS7_MYCTA 30S ribosomal protein S7 OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|C1AL16|RS7_MYCBT 30S ribosomal protein S7 OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|A1KGG3|RS7_MYCBP 30S ribosomal protein S7 OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|Q53539|RS7_MYCBO 30S ribosomal protein S7 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpsG PE=3 SV=2
Length = 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|B2HSL1|RS7_MYCMM 30S ribosomal protein S7 OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=rpsG PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
++ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|Q0RRS5|RS7_FRAAA 30S ribosomal protein S7 OS=Frankia alni (strain ACN14a) GN=rpsG
PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
DP V + +A++N KP L++RS + TYQ+
Sbjct: 57 DPVVTLKRALDNVKPTLEVRSRRVGGATYQV 87
>sp|Q2JFI0|RS7_FRASC 30S ribosomal protein S7 OS=Frankia sp. (strain CcI3) GN=rpsG
PE=3 SV=1
Length = 156
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
DP V + +A++N KP L++RS + TYQ+
Sbjct: 57 DPVVTLKRALDNVKPTLEVRSRRVGGATYQV 87
>sp|A8LC60|RS7_FRASN 30S ribosomal protein S7 OS=Frankia sp. (strain EAN1pec) GN=rpsG
PE=3 SV=1
Length = 156
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
DP V + +A++N KP L++RS + TYQ+
Sbjct: 57 DPVVTLKRALDNVKPTLEVRSRRVGGATYQV 87
>sp|P30764|RS7_MYCLE 30S ribosomal protein S7 OS=Mycobacterium leprae (strain TN)
GN=rpsG PE=3 SV=2
Length = 156
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
+ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EHARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
>sp|B8ZSC3|RS7_MYCLB 30S ribosomal protein S7 OS=Mycobacterium leprae (strain Br4923)
GN=rpsG PE=3 SV=1
Length = 156
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 35 DEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
+ R+ DP + + +A++N KP L++RS + TYQ+
Sbjct: 48 EHARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQV 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,527,130
Number of Sequences: 539616
Number of extensions: 709099
Number of successful extensions: 3322
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3114
Number of HSP's gapped (non-prelim): 236
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)