Query psy4242
Match_columns 74
No_of_seqs 118 out of 849
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 20:27:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rss_A Ribosomal protein S7; R 99.9 5.5E-25 1.9E-29 148.8 6.2 58 1-74 25-82 (151)
2 1hus_A Ribosomal protein S7; R 99.9 6.6E-25 2.2E-29 149.0 5.6 58 1-74 29-86 (155)
3 3r8n_G 30S ribosomal protein S 99.9 4.6E-25 1.6E-29 149.2 3.7 58 1-74 29-86 (151)
4 3gty_S TF, 30S ribosomal prote 99.9 5.1E-25 1.7E-29 148.7 3.7 58 1-74 23-80 (149)
5 3bbn_G Ribosomal protein S7; s 99.9 7.5E-25 2.6E-29 148.8 3.2 58 1-74 30-87 (155)
6 3i1m_G 30S ribosomal protein S 99.9 1.6E-24 5.6E-29 150.1 4.8 58 1-74 30-87 (179)
7 2xzm_G Ribosomal protein S7 co 99.9 1.3E-22 4.5E-27 142.5 6.6 58 1-74 71-132 (200)
8 2zkq_g 40S ribosomal protein S 99.7 9.6E-23 3.3E-27 143.6 0.0 58 1-74 76-137 (204)
9 1iqv_A Ribosomal protein S7; R 99.8 1.3E-21 4.5E-26 139.0 5.4 55 4-74 97-151 (218)
10 3u5c_F RP14, S2, YS8, 40S ribo 99.8 3.4E-20 1.2E-24 132.2 5.1 55 4-74 104-158 (225)
11 4h7y_A Dual specificity protei 58.2 6.3 0.00022 26.5 2.4 35 3-58 106-140 (161)
12 3iyg_G T-complex protein 1 sub 29.4 91 0.0031 23.5 5.0 23 3-25 417-439 (515)
13 3iyg_A T-complex protein 1 sub 27.6 1E+02 0.0036 23.2 5.0 37 4-52 425-461 (529)
14 2z34_C Protein HIR1; histone c 27.0 11 0.00036 18.7 -0.4 10 1-10 11-20 (29)
15 3iyg_B T-complex protein 1 sub 25.7 1.2E+02 0.004 22.9 5.0 22 4-25 416-437 (513)
16 3iyg_D T-complex protein 1 sub 25.5 1.1E+02 0.0038 23.0 4.9 36 4-51 423-458 (518)
17 3ko1_A Chaperonin; 9-fold symm 25.2 1.3E+02 0.0045 22.9 5.3 37 4-52 437-473 (553)
18 3p9d_B T-complex protein 1 sub 24.8 1.2E+02 0.0041 22.9 4.9 22 4-25 423-444 (527)
19 3ruv_A Chaperonin, CPN; double 24.2 1.2E+02 0.004 23.1 4.8 22 4-25 423-444 (543)
20 3iyg_E T-complex protein 1 sub 23.9 1.3E+02 0.0045 22.5 5.0 37 4-52 419-455 (515)
21 3iyg_Q T-complex protein 1 sub 23.9 1.3E+02 0.0045 22.5 5.0 37 4-52 415-451 (512)
22 3p9d_A T-complex protein 1 sub 22.9 1.3E+02 0.0045 22.9 4.9 37 4-52 441-477 (559)
23 3iyg_H T-complex protein 1 sub 21.8 1.5E+02 0.005 22.4 4.9 22 4-25 419-440 (515)
24 1a6d_B Thermosome (beta subuni 21.5 1.4E+02 0.0048 22.6 4.7 22 4-25 428-449 (543)
25 3aq1_B Thermosome subunit; gro 21.2 1.2E+02 0.0041 22.7 4.3 22 4-25 381-402 (500)
26 3p9d_E T-complex protein 1 sub 21.1 1.5E+02 0.005 22.7 4.8 22 4-25 462-483 (562)
27 2uy1_A Cleavage stimulation fa 20.6 15 0.00053 26.9 -0.7 21 3-23 6-27 (493)
No 1
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=99.91 E-value=5.5e-25 Score=148.81 Aligned_cols=58 Identities=31% Similarity=0.533 Sum_probs=56.5
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
+|++|||++|++|||+||++|+.++ +.||++||++||+||+|++||+++|+||+||||
T Consensus 25 lM~~GKKs~A~~Iv~~a~~~i~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqv 82 (151)
T 1rss_A 25 IMRDGKKNLAARIFYDACKIIQEKT----------------GQEPLKVFKQAVENVKPRMEVRSRRVGGANYQV 82 (151)
T ss_dssp HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEE
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeecCCEEEEE
Confidence 5999999999999999999999988 899999999999999999999999999999997
No 2
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=99.91 E-value=6.6e-25 Score=148.98 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=56.6
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
||++|||++|++|||+||++|+.++ +.||++||++||+||+|++||+++|+||+||||
T Consensus 29 lM~~GKKs~A~~Iv~~a~~~I~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqV 86 (155)
T 1hus_A 29 IMIDGKKSKAQKILYTAFDIIRERT----------------GKDPMEVFEQALKNVMPVLEVRARRVGGANYQV 86 (155)
T ss_dssp HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCHHHHHHHHHHHHCCSEEEECCEETTEECCE
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeecCCEEEEE
Confidence 6999999999999999999999988 899999999999999999999999999999997
No 3
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=99.90 E-value=4.6e-25 Score=149.21 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=56.5
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
||++|||++|++|||+||++|+.++ +.||++||++||+||+|++||+++|+||+||||
T Consensus 29 lM~~GKK~~A~~Iv~~a~~~I~~kt----------------~~nPl~vl~~Ai~Nv~P~~evks~rvGG~tyqv 86 (151)
T 3r8n_G 29 LMVDGKKSTAESIVYSALETLAQRS----------------GKSELEAFEVALENVRPTVEVKSRRVGGSTYQV 86 (151)
T ss_dssp HCCTTCHHHHHHHHHHHHHHHHTTT----------------CSCSHHHHHHHHHHHCCSEEECCCCCSSCCCCC
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHh----------------CCCHHHHHHHHHHhcCCCeEEEEEeeCCEEEEE
Confidence 5999999999999999999999887 899999999999999999999999999999997
No 4
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=99.90 E-value=5.1e-25 Score=148.65 Aligned_cols=58 Identities=29% Similarity=0.499 Sum_probs=56.3
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
||++|||++|++|||+||++|+.++ +.||++||++||+||+|++||+++|+||++|||
T Consensus 23 lM~~GKK~~A~~Iv~~a~~~I~~kt----------------~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqv 80 (149)
T 3gty_S 23 VMWDGKKTIAQKIVYGAFDIIREKT----------------KKDPLEVFRQAVENVKPVLEVRPRRVGGATYQV 80 (149)
T ss_dssp HCBTTBTTTHHHHHHHHHHHHHHTT----------------SSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEE
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHc----------------CCcHHHHHHHHHHhCCCCeEEEEEeeCCEEEEE
Confidence 5999999999999999999999887 899999999999999999999999999999997
No 5
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.90 E-value=7.5e-25 Score=148.77 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=56.3
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
+|++|||++|++|||+||++|+.++ +.||++||++||+||+|++||+++|+||+||||
T Consensus 30 lM~~GKKs~A~~Iv~~a~~~i~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqV 87 (155)
T 3bbn_G 30 ILKHGKKSLAYQILYRAVKKIQQKT----------------ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQV 87 (155)
T ss_dssp SCCTTCHHHHHHHHSHHHHTTTTTC----------------SSCTTHHHHHHGGGTCCSEEECCEEETTEEECC
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHc----------------CCChHHHHHHHHHhCCCCeEEEEeccCCeEEEE
Confidence 7999999999999999999999877 899999999999999999999999999999997
No 6
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=99.90 E-value=1.6e-24 Score=150.09 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=56.6
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
||++|||++|++|||+||++|++++ +.||++||++||+||+|++||+++|+||+||||
T Consensus 30 lM~~GKKs~A~~Iv~~A~~~I~~kt----------------~~nPl~vl~~AI~Nv~P~veVks~rvGG~tyqV 87 (179)
T 3i1m_G 30 LMVDGKKSTAESIVYSALETLAQRS----------------GKSELEAFEVALENVRPTVEVKSRRVGGSTYQV 87 (179)
T ss_dssp HCCTTCHHHHHHHHHHHHHHHHHHH----------------CSCSHHHHHHHHHHHCCSEEEECCCCSSSCCCE
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHh----------------CCCHHHHHHHHHHhCCCCeEEEEEeeCCEEEEE
Confidence 5999999999999999999999998 899999999999999999999999999999997
No 7
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=99.87 E-value=1.3e-22 Score=142.54 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=56.3
Q ss_pred CCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~----GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
||++ |||++|++|||+||++|+.++ +.||++||++||+||+|++||+++|+||++|||
T Consensus 71 lM~~g~n~GKKs~A~~Iv~~A~~~I~~kt----------------~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqV 132 (200)
T 2xzm_G 71 LMFHGRNAGKKALCIKVVKNAFEIIHLVT----------------GRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQ 132 (200)
T ss_dssp HSCSTTTCCCHHHHHHHHHHHHHHHHHHH----------------CSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEE
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeccCCEEEEE
Confidence 5899 999999999999999999998 899999999999999999999999999999997
No 8
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=99.75 E-value=9.6e-23 Score=143.60 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=56.3
Q ss_pred CCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 1 MMKK----GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 1 iMk~----GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
||++ |||++|++|||+||++|+.++ +.||++||++||+||+|++||+++|+||++|||
T Consensus 76 lM~~g~n~GKKs~A~~Ivy~A~~~I~~kt----------------~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqV 137 (204)
T 2zkq_g 76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLT----------------GENPLQVLVNAIINSGPREDSTRIGRAGTVRRQ 137 (204)
Confidence 6999 999999999999999999887 889999999999999999999999999999997
No 9
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=99.84 E-value=1.3e-21 Score=139.00 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
+|||++|++|||+||++|++++ +.||++||++||+||+|.++|+++|+||++|||
T Consensus 97 ~GKK~~A~~Iv~~Af~iI~~~t----------------~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~yqv 151 (218)
T 1iqv_A 97 NSKKVRAYEVVKEAFKIIEKRT----------------GKNPIQVLVWAIENAAPREDTTSVMFGGIRYHV 151 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH----------------SSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHhCCCceEEEEeccCCEEEEE
Confidence 9999999999999999999998 899999999999999999999999999999997
No 10
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=99.80 E-value=3.4e-20 Score=132.19 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=51.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCCceeEEEEeeCcccccC
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P~vev~~~r~GG~tYqV 74 (74)
+|||++|++|||+||++|+.++ +.||++||++||+||+|+++++++..||++|||
T Consensus 104 ~GKKs~A~~Ivy~AfeiI~~kT----------------~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqV 158 (225)
T 3u5c_F 104 NGKKLKAVRIIKHTLDIINVLT----------------DQNPIQVVVDAITNTGPREDTTRVGGGGAARRQ 158 (225)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTT----------------CSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCE
T ss_pred CCcHHHHHHHHHHHHHHHHHhc----------------CCCceeHHHHHHHhCCCCeeEEEeccCCEEEEE
Confidence 4999999999999999999987 899999999999999999997777777999997
No 11
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=58.16 E-value=6.3 Score=26.50 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=27.4
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHHHHcCCC
Q psy4242 3 KKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKP 58 (74)
Q Consensus 3 k~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~Ai~N~~P 58 (74)
+.|+-..|++|+-.|+. . .-.|.++|..||.|...
T Consensus 106 Rqgnl~kARkILg~AiG-----~----------------~~k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 106 SQGNVKKSKQLLQKAVE-----R----------------GAVPLEMLEIALRNLNL 140 (161)
T ss_dssp HTTCHHHHHHHHHHHHH-----T----------------TCBCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHhc-----c----------------CCCcHHHHHHHHHhhhc
Confidence 46777888888888877 1 55689999999999753
No 12
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=29.35 E-value=91 Score=23.47 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.8
Q ss_pred CcChHHHHHHHHHHHHHHHHHHH
Q psy4242 3 KKGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 3 k~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
..|+..+|-++|.+||+.|=+.-
T Consensus 417 ~~g~eq~~i~~~a~Ale~ip~~L 439 (515)
T 3iyg_G 417 MTGVEQWPYRAVAQALEVIPRTL 439 (515)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999998654
No 13
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=27.57 E-value=1e+02 Score=23.24 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=29.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 52 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~A 52 (74)
.|+-.+|-++|.+||+.|-+.-. .++ +.||..++.+-
T Consensus 425 ~g~eq~~i~~fa~ALe~ip~~La---~Na---------G~d~~~~v~~l 461 (529)
T 3iyg_A 425 GSREQLAIAEFARSLLVIPNTLA---VNA---------AQDSTDLVAKL 461 (529)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH---HHc---------CCCHHHHHHHH
Confidence 68899999999999999987652 122 88998887553
No 14
>2z34_C Protein HIR1; histone chaperone, nucleosome disassmebly/assembly, chromatin regulation, chromatin regulator, coiled coil, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=26.98 E-value=11 Score=18.74 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=6.6
Q ss_pred CCCcChHHHH
Q psy4242 1 MMKKGNKELA 10 (74)
Q Consensus 1 iMk~GkK~~A 10 (74)
++++|||-+|
T Consensus 11 itK~GKKRVa 20 (29)
T 2z34_C 11 ITKEGKKRVA 20 (29)
T ss_dssp ECTTSCEEEC
T ss_pred EeeCCceeec
Confidence 3688887543
No 15
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=25.68 E-value=1.2e+02 Score=22.88 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
.|+..++-++|.+||+.|-+.-
T Consensus 416 ~g~~q~~i~~~a~ALe~ip~~L 437 (513)
T 3iyg_B 416 PGKEAVAMESYAKALRMLPTII 437 (513)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999997654
No 16
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=25.54 E-value=1.1e+02 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=26.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDK 51 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~ 51 (74)
.|+-.++-++|.+||+.|-+.-. .++ +.||..++.+
T Consensus 423 ~g~~q~~i~~~a~ALe~ip~~La---~Na---------G~d~~~~v~~ 458 (518)
T 3iyg_D 423 SGMESYCIRAFADAMEVIPSTLA---ENA---------GLNPISTVTE 458 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH---Hhc---------CCCHHHHHHH
Confidence 68889999999999999986542 122 6677766654
No 17
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=25.21 E-value=1.3e+02 Score=22.90 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=27.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 52 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~A 52 (74)
.|+-.++-++|.+||+.|-+.-. .++ +.||..++.+-
T Consensus 437 ~g~eq~~i~~~a~ALe~ip~~La---~Na---------G~d~~~~v~~l 473 (553)
T 3ko1_A 437 GGKEQLAVEAYANALESLVSILI---ENA---------GFDPIDLLMKL 473 (553)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH---HHH---------TSCHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHhHHHHHH---Hhc---------CCCHHHHHHHH
Confidence 58889999999999999986542 122 66777766543
No 18
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=24.78 E-value=1.2e+02 Score=22.86 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
+|+-.++-++|.+||+.|-+.-
T Consensus 423 ~g~eq~~i~~~a~ALe~ip~~L 444 (527)
T 3p9d_B 423 DGKKSLAVEAFARALRQLPTIL 444 (527)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999997654
No 19
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=24.21 E-value=1.2e+02 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
.|+-.++-++|.+||+.|-+.-
T Consensus 423 ~g~eq~~i~~~a~ALe~ip~~L 444 (543)
T 3ruv_A 423 SGREQLAVRAFADALEVIPRTL 444 (543)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999987654
No 20
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=23.90 E-value=1.3e+02 Score=22.54 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=26.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 52 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~A 52 (74)
+|+..++-++|.+||+.|-+.-. .++ +.||..++.+-
T Consensus 419 ~g~~q~~i~~~a~ALe~ip~~La---~Na---------G~d~~~~v~~l 455 (515)
T 3iyg_E 419 PTLEQYAMRAFADALEVIPMALA---ENS---------GMNPIQTMTEV 455 (515)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH---HhC---------CCCHHHHHHHH
Confidence 68889999999999999976542 122 66777666543
No 21
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=23.90 E-value=1.3e+02 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=27.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 52 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~A 52 (74)
.|+-.++-++|.+||+.|-+.-. .++ +.||..++.+-
T Consensus 415 ~g~eq~~i~~~a~ALe~ip~~La---~Na---------G~d~~~~v~~l 451 (512)
T 3iyg_Q 415 PGLEQYAIKKFAEAFEAIPRALA---ENS---------GVKANEVISKL 451 (512)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH---Hhc---------CCCHHHHHHHH
Confidence 68889999999999999976542 122 66777776543
No 22
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=22.91 E-value=1.3e+02 Score=22.92 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=29.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHhhhcCCHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKA 52 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~~~k~~~~~~~~~~~~i~~nP~~i~~~A 52 (74)
.|+..++-++|.+||+.|-+.-. .+| +.||..++.+-
T Consensus 441 ~g~eq~~i~~~a~ALe~ip~~La---~Na---------G~d~~~vv~~l 477 (559)
T 3p9d_A 441 GSREQLAIAEFAAALLIIPKTLA---VNA---------AKDSSELVAKL 477 (559)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHH---HTS---------SSCCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH---HHC---------CCCHHHHHHHH
Confidence 68899999999999999987652 223 88999887654
No 23
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=21.85 E-value=1.5e+02 Score=22.38 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
.|+..+|-++|.+||+.|-+.-
T Consensus 419 ~g~eq~~i~~~a~ALe~ip~~L 440 (515)
T 3iyg_H 419 PGKQQLLIGAYAKALEIIPRQL 440 (515)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999997654
No 24
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=21.48 E-value=1.4e+02 Score=22.62 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
.|+..++-++|.+||+.|-+.-
T Consensus 428 ~g~~q~~i~~~a~ALe~ip~~L 449 (543)
T 1a6d_B 428 GGRQQLAIEKFADAIEEIPRAL 449 (543)
T ss_dssp CSSHHHHHHHHHHHHTHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999998764
No 25
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=21.25 E-value=1.2e+02 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
.|+..++-++|.+||+.|-+.-
T Consensus 381 ~g~~q~~i~~~a~ALe~ip~~L 402 (500)
T 3aq1_B 381 KGREQLAVSKFAEALEVIPVAL 402 (500)
T ss_dssp CSHHHHHHHHHHHHTTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999988765
No 26
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=21.08 E-value=1.5e+02 Score=22.67 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHH
Q psy4242 4 KGNKELAREVFEYTVKSIKRIQ 25 (74)
Q Consensus 4 ~GkK~~A~~Iv~~al~~Ik~~~ 25 (74)
.|+..++-++|.+||+.|-+.-
T Consensus 462 ~g~eq~~i~~~a~ALe~ip~~L 483 (562)
T 3p9d_E 462 RGIDQYAFRGFAQALDTIPMTL 483 (562)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999997654
No 27
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=20.60 E-value=15 Score=26.95 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=10.7
Q ss_pred CcCh-HHHHHHHHHHHHHHHHH
Q psy4242 3 KKGN-KELAREVFEYTVKSIKR 23 (74)
Q Consensus 3 k~Gk-K~~A~~Iv~~al~~Ik~ 23 (74)
+.|+ -..||.+...+++..-.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~ 27 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS 27 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT
T ss_pred HcCcchHHHHHHHHHHHHHCCC
Confidence 3453 55677777777766654
Done!