RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4242
(74 letters)
>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. This family
contains ribosomal protein S7 from prokaryotes and S5
from eukaryotes.
Length = 149
Score = 39.5 bits (93), Expect = 2e-05
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+MK G K LA ++ ++ I+ EK K +P ++ +AIEN KP +
Sbjct: 30 LMKDGKKSLAEKIVYDALEIIE----EKTGK------------NPLEVLVQAIENVKPRV 73
Query: 61 KLRSIKRAAVTYQ 73
+++S + TYQ
Sbjct: 74 EVKSRRVGGATYQ 86
>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated.
Length = 156
Score = 32.0 bits (74), Expect = 0.009
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+M G K +A ++ Y ++ I+ EK K DP + +KA+EN KP++
Sbjct: 30 LMLDGKKSVAEKIV-Y--GALDIIE-EKTGK------------DPLEVFEKALENVKPVV 73
Query: 61 KLRSIKRAAVTYQ 73
+++S + TYQ
Sbjct: 74 EVKSRRVGGATYQ 86
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 31.0 bits (71), Expect = 0.021
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+M+ G K LA ++ I+ +K + +P + +KAIEN KP
Sbjct: 29 IMRDGKKSLAEKIVYGAFDIIE----KKTGQ------------NPLQVFEKAIENVKPRE 72
Query: 61 KLRSIKRAAVTYQ 73
+++S + TYQ
Sbjct: 73 EVKSRRVGGATYQ 85
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar
branch of the ribosomal protein S7 family (includes
prokaroytic S7 and eukaryotic S5). The eukaryotic and
archaeal branch is described by model TIGR01028
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 31.1 bits (71), Expect = 0.024
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+MK G K LA + + I +K + DP + ++A+EN KP++
Sbjct: 28 VMKDGKKSLAESIVYKAFERIA----KKTGE------------DPLEVFEQALENVKPLV 71
Query: 61 KLRSIKRAAVTYQ 73
+++S + TYQ
Sbjct: 72 EVKSRRVGGATYQ 84
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7.
Length = 155
Score = 29.5 bits (67), Expect = 0.087
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
++K G K LA + +K I+ +K K +P ++ +AI N P +
Sbjct: 30 ILKSGKKSLAYRIVYRALKKIQ----QKTEK------------NPLSVLRQAIRNVTPDV 73
Query: 61 KLRSIKRAAVTYQ 73
++++ + TYQ
Sbjct: 74 EVKARRVGGSTYQ 86
>gnl|CDD|130148 TIGR01076, sortase_fam, LPXTG-site transpeptidase (sortase) family
protein. This family includes Staphylococcus aureus
sortase, a transpeptidase that attaches surface proteins
by the Thr of an LPXTG motif to the cell wall. It also
includes a protein required for correct assembly of an
LPXTG-containing fimbrial protein, a set of homologous
proteins from Streptococcus pneumoniae, in which LPXTG
proteins are common. However, related proteins are found
in Bacillus subtilis and Methanobacterium
thermoautotrophicum, in which LPXTG-mediated cell wall
attachment is not known [Cell envelope, Other, Protein
fate, Protein and peptide secretion and trafficking].
Length = 136
Score = 26.3 bits (58), Expect = 1.2
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 2 MKKGNK---ELAREVFEYTVKSIKRIQIEKYNKATSDEERESIIL---DPYVI 48
+KKG+ + EV Y V S K ++ ++ + L PY+I
Sbjct: 64 LKKGDMLYLHVGNEVLTYQVTSTKIVEPTDTEVLLIQHGKDYLTLITCTPYMI 116
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf.
Putative zinc fingers with GTPase activating proteins
(GAPs) towards the small GTPase, Arf. The GAP of ARD1
stimulates GTPase hydrolysis for ARD1 but not ARFs.
Length = 117
Score = 26.0 bits (58), Expect = 1.5
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYV 47
MK G + A E +E + ++ E+RES I YV
Sbjct: 68 FMKAGGNKRANEFWEA-----NLPPPKPPPSSSDREKRESFIRAKYV 109
>gnl|CDD|236936 PRK11608, pspF, phage shock protein operon transcriptional
activator; Provisional.
Length = 326
Score = 25.8 bits (57), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 29 YNKATSDEERESIILDPY 46
Y TS+ ++II+DP+
Sbjct: 238 YRHGTSEYPLDNIIIDPF 255
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.337
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,724,023
Number of extensions: 295245
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 25
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)